Query 028963
Match_columns 201
No_of_seqs 182 out of 1068
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02621 nicotinamidase 100.0 1.5E-47 3.2E-52 299.4 20.2 196 1-200 1-196 (197)
2 PRK11440 putative hydrolase; P 100.0 3.4E-43 7.3E-48 273.0 20.0 177 18-198 3-188 (188)
3 cd01013 isochorismatase Isocho 100.0 1.2E-42 2.6E-47 272.7 17.3 174 16-192 22-203 (203)
4 PRK11609 nicotinamidase/pyrazi 100.0 8.4E-42 1.8E-46 269.8 20.3 173 22-197 1-210 (212)
5 TIGR03614 RutB pyrimidine util 100.0 6.5E-42 1.4E-46 272.7 19.7 181 18-200 10-221 (226)
6 PF00857 Isochorismatase: Isoc 100.0 1.5E-42 3.3E-47 265.6 14.5 167 24-193 1-174 (174)
7 cd01015 CSHase N-carbamoylsarc 100.0 8.3E-42 1.8E-46 263.2 18.4 170 25-196 1-179 (179)
8 cd01012 YcaC_related YcaC rela 100.0 6.2E-40 1.4E-44 247.7 15.5 154 25-200 1-157 (157)
9 cd01011 nicotinamidase Nicotin 100.0 1.3E-39 2.9E-44 254.3 17.1 161 24-189 2-196 (196)
10 PTZ00331 alpha/beta hydrolase; 100.0 4.4E-39 9.5E-44 254.0 19.2 174 18-196 7-211 (212)
11 COG1335 PncA Amidases related 100.0 1.7E-38 3.6E-43 249.6 17.8 177 19-199 1-203 (205)
12 cd00431 cysteine_hydrolases Cy 100.0 3.3E-38 7.2E-43 238.8 17.1 154 25-182 1-161 (161)
13 PLN02743 nicotinamidase 100.0 2.6E-37 5.5E-42 246.9 18.3 167 18-191 22-236 (239)
14 cd01014 nicotinamidase_related 100.0 3.8E-37 8.2E-42 232.1 13.2 140 25-178 1-146 (155)
15 COG1535 EntB Isochorismate hyd 100.0 9.1E-37 2E-41 226.6 11.8 181 17-200 24-212 (218)
16 KOG4003 Pyrazinamidase/nicotin 100.0 1.4E-28 3.1E-33 182.7 6.7 167 24-193 2-214 (223)
17 KOG4044 Mitochondrial associat 99.9 3.2E-25 7E-30 162.9 12.3 159 18-200 10-172 (201)
18 PF02739 5_3_exonuc_N: 5'-3' e 84.4 2 4.4E-05 32.6 4.6 44 120-163 89-132 (169)
19 TIGR00288 conserved hypothetic 77.1 18 0.0004 27.2 7.4 115 22-163 22-136 (160)
20 PRK12390 1-aminocyclopropane-1 77.0 12 0.00026 31.5 7.2 67 125-191 61-129 (337)
21 COG2179 Predicted hydrolase of 74.0 12 0.00027 28.4 5.7 113 26-170 30-145 (175)
22 KOG1250 Threonine/serine dehyd 71.7 20 0.00044 31.1 7.1 102 88-198 202-310 (457)
23 PRK10444 UMP phosphatase; Prov 70.4 37 0.0008 27.3 8.3 42 26-68 3-44 (248)
24 TIGR01274 ACC_deam 1-aminocycl 68.1 24 0.00052 29.7 7.0 66 126-191 61-128 (337)
25 TIGR03586 PseI pseudaminic aci 64.8 36 0.00078 28.8 7.3 113 43-185 76-192 (327)
26 PF00070 Pyr_redox: Pyridine n 64.2 35 0.00076 21.8 6.4 58 133-192 1-61 (80)
27 cd00763 Bacterial_PFK Phosphof 64.0 63 0.0014 27.2 8.6 104 42-163 15-122 (317)
28 TIGR02317 prpB methylisocitrat 63.9 84 0.0018 26.0 12.1 98 25-142 74-186 (285)
29 cd00008 53EXOc 5'-3' exonuclea 63.6 15 0.00033 29.4 4.7 44 120-163 88-131 (240)
30 smart00475 53EXOc 5'-3' exonuc 63.5 16 0.00036 29.7 4.9 44 120-163 87-130 (259)
31 TIGR00288 conserved hypothetic 62.1 57 0.0012 24.6 7.2 81 103-189 52-133 (160)
32 PF05872 DUF853: Bacterial pro 61.7 4.9 0.00011 35.5 1.6 116 12-140 243-363 (502)
33 PRK09482 flap endonuclease-lik 60.7 16 0.00035 29.8 4.4 44 120-163 87-130 (256)
34 PF05991 NYN_YacP: YacP-like N 60.5 44 0.00096 25.1 6.5 52 139-199 77-128 (166)
35 PF00009 GTP_EFTU: Elongation 60.2 18 0.00038 27.4 4.4 40 19-65 91-130 (188)
36 PF03853 YjeF_N: YjeF-related 59.9 37 0.00081 25.5 6.1 64 129-192 24-88 (169)
37 COG0678 AHP1 Peroxiredoxin [Po 59.6 50 0.0011 24.8 6.3 67 104-171 36-112 (165)
38 PF06833 MdcE: Malonate decarb 57.8 27 0.00058 28.1 5.0 48 20-67 62-115 (234)
39 PHA02567 rnh RnaseH; Provision 57.2 25 0.00054 29.4 4.9 42 122-163 112-153 (304)
40 PRK14976 5'-3' exonuclease; Pr 56.8 23 0.00049 29.2 4.7 44 120-163 93-136 (281)
41 PRK05443 polyphosphate kinase; 56.6 1E+02 0.0022 29.0 9.3 82 105-189 339-426 (691)
42 PF08659 KR: KR domain; Inter 56.0 82 0.0018 23.7 7.5 64 120-185 14-79 (181)
43 COG0303 MoeA Molybdopterin bio 56.0 76 0.0017 27.7 8.0 80 91-180 185-266 (404)
44 cd06449 ACCD Aminocyclopropane 55.6 44 0.00095 27.6 6.3 43 126-168 47-89 (307)
45 TIGR03705 poly_P_kin polyphosp 55.5 69 0.0015 30.0 8.0 82 105-189 330-417 (672)
46 PHA00439 exonuclease 55.2 29 0.00062 28.8 5.0 43 121-163 101-144 (286)
47 PF09419 PGP_phosphatase: Mito 55.1 91 0.002 23.7 7.6 121 20-166 37-167 (168)
48 PF10281 Ish1: Putative stress 55.0 6.8 0.00015 21.8 1.0 19 114-132 1-19 (38)
49 PRK05973 replicative DNA helic 54.3 28 0.0006 28.0 4.7 47 23-69 147-195 (237)
50 cd03174 DRE_TIM_metallolyase D 53.9 1.1E+02 0.0024 24.3 11.6 129 43-192 18-166 (265)
51 TIGR01452 PGP_euk phosphoglyco 53.9 1.2E+02 0.0026 24.6 8.8 40 26-66 4-43 (279)
52 COG0052 RpsB Ribosomal protein 53.0 37 0.00079 27.6 5.1 36 24-71 158-193 (252)
53 TIGR00732 dprA DNA protecting 52.6 74 0.0016 25.2 6.9 65 131-198 156-220 (220)
54 KOG1371 UDP-glucose 4-epimeras 52.5 41 0.00089 28.5 5.5 42 131-173 2-43 (343)
55 TIGR03569 NeuB_NnaB N-acetylne 51.6 55 0.0012 27.7 6.3 113 43-185 75-193 (329)
56 PRK10736 hypothetical protein; 51.4 1.6E+02 0.0035 25.4 10.5 67 121-190 128-195 (374)
57 PRK03910 D-cysteine desulfhydr 51.0 42 0.00092 28.1 5.6 42 127-168 60-101 (331)
58 PRK14045 1-aminocyclopropane-1 49.9 40 0.00087 28.3 5.3 40 126-165 65-104 (329)
59 PRK13512 coenzyme A disulfide 49.6 1.4E+02 0.0029 26.1 8.7 69 121-191 138-209 (438)
60 TIGR02482 PFKA_ATP 6-phosphofr 49.3 1.4E+02 0.003 24.9 8.3 103 43-163 15-122 (301)
61 PRK10098 putative dehydrogenas 48.6 39 0.00084 28.9 4.9 45 22-68 76-120 (350)
62 PTZ00445 p36-lilke protein; Pr 48.2 62 0.0013 25.7 5.6 48 21-68 40-102 (219)
63 PRK09564 coenzyme A disulfide 47.7 1.4E+02 0.003 25.8 8.5 68 122-191 140-211 (444)
64 TIGR02483 PFK_mixed phosphofru 47.2 1.3E+02 0.0029 25.3 7.9 105 42-163 14-124 (324)
65 PRK13397 3-deoxy-7-phosphohept 47.0 1.4E+02 0.0031 24.2 7.7 20 45-64 67-86 (250)
66 COG0855 Ppk Polyphosphate kina 46.1 1.1E+02 0.0023 28.5 7.4 83 104-189 342-430 (696)
67 TIGR03849 arch_ComA phosphosul 45.8 1.2E+02 0.0026 24.5 7.0 78 108-186 26-114 (237)
68 PRK03202 6-phosphofructokinase 45.8 1.6E+02 0.0036 24.7 8.2 103 43-163 17-123 (320)
69 COG0761 lytB 4-Hydroxy-3-methy 45.3 1.8E+02 0.0039 24.2 10.4 69 91-165 54-123 (294)
70 PF12242 Eno-Rase_NADH_b: NAD( 45.2 52 0.0011 21.6 4.0 34 129-162 37-70 (78)
71 PRK14071 6-phosphofructokinase 45.2 1.1E+02 0.0024 26.2 7.2 40 121-163 98-138 (360)
72 PRK11320 prpB 2-methylisocitra 45.0 1.8E+02 0.0039 24.2 11.8 96 26-141 80-190 (292)
73 CHL00067 rps2 ribosomal protei 44.2 62 0.0013 25.8 5.3 38 22-71 161-198 (230)
74 TIGR02463 MPGP_rel mannosyl-3- 43.8 41 0.00089 26.0 4.2 41 26-66 1-41 (221)
75 COG2515 Acd 1-aminocyclopropan 43.5 45 0.00097 28.0 4.4 40 128-167 61-100 (323)
76 PF13481 AAA_25: AAA domain; P 43.3 42 0.00092 25.2 4.1 46 23-68 141-190 (193)
77 TIGR00593 pola DNA polymerase 43.1 41 0.0009 32.5 4.7 44 120-163 87-130 (887)
78 PF08643 DUF1776: Fungal famil 42.9 36 0.00078 28.4 3.8 33 131-163 3-35 (299)
79 TIGR01275 ACC_deam_rel pyridox 42.4 51 0.0011 27.2 4.7 41 126-166 51-91 (311)
80 cd08182 HEPD Hydroxyethylphosp 42.3 2E+02 0.0043 24.4 8.4 28 155-182 47-74 (367)
81 PF06230 DUF1009: Protein of u 42.2 11 0.00025 29.7 0.8 72 121-198 3-79 (214)
82 PRK03669 mannosyl-3-phosphogly 42.1 68 0.0015 25.8 5.4 43 22-64 5-47 (271)
83 PRK13260 2,3-diketo-L-gulonate 42.0 54 0.0012 27.8 4.8 45 22-68 72-116 (332)
84 COG4108 PrfC Peptide chain rel 41.9 42 0.0009 29.8 4.1 37 22-65 105-141 (528)
85 PRK12311 rpsB 30S ribosomal pr 41.9 62 0.0013 27.4 5.1 37 23-71 153-189 (326)
86 TIGR01012 Sa_S2_E_A ribosomal 41.8 61 0.0013 25.3 4.7 36 24-71 110-145 (196)
87 PRK10976 putative hydrolase; P 41.7 48 0.001 26.5 4.4 39 26-64 4-42 (266)
88 PRK10513 sugar phosphate phosp 41.5 58 0.0013 26.0 4.8 40 25-64 4-43 (270)
89 cd00363 PFK Phosphofructokinas 41.4 2.2E+02 0.0048 24.1 9.0 104 42-163 15-128 (338)
90 COG1066 Sms Predicted ATP-depe 41.2 58 0.0013 28.6 4.9 49 21-69 166-222 (456)
91 PRK06381 threonine synthase; V 41.2 1.9E+02 0.0042 23.9 8.1 59 125-191 57-115 (319)
92 PRK12702 mannosyl-3-phosphogly 40.9 53 0.0011 27.5 4.5 40 26-65 3-42 (302)
93 PRK10530 pyridoxal phosphate ( 40.7 47 0.001 26.5 4.2 40 25-64 4-43 (272)
94 PRK15126 thiamin pyrimidine py 40.6 50 0.0011 26.5 4.3 39 26-64 4-42 (272)
95 TIGR03175 AllD ureidoglycolate 40.5 58 0.0013 27.8 4.8 45 22-68 72-116 (349)
96 PF02679 ComA: (2R)-phospho-3- 39.9 74 0.0016 25.8 5.1 66 124-190 61-131 (244)
97 cd01393 recA_like RecA is a b 39.9 63 0.0014 25.0 4.7 49 21-69 112-171 (226)
98 PRK08329 threonine synthase; V 39.8 1.9E+02 0.004 24.5 7.8 60 124-191 97-156 (347)
99 cd08189 Fe-ADH5 Iron-containin 39.7 2E+02 0.0044 24.5 8.1 18 122-139 46-63 (374)
100 TIGR02461 osmo_MPG_phos mannos 39.7 44 0.00095 26.4 3.8 38 26-64 1-38 (225)
101 PRK09361 radB DNA repair and r 39.4 43 0.00092 26.1 3.7 48 22-69 106-164 (225)
102 PF13727 CoA_binding_3: CoA-bi 39.0 57 0.0012 23.8 4.1 43 120-162 131-174 (175)
103 COG0561 Cof Predicted hydrolas 38.9 68 0.0015 25.5 4.9 43 24-66 3-45 (264)
104 PRK02102 ornithine carbamoyltr 38.5 2.5E+02 0.0053 23.8 8.8 104 91-197 111-221 (331)
105 cd07943 DRE_TIM_HOA 4-hydroxy- 38.2 1.7E+02 0.0038 23.5 7.2 68 125-192 93-161 (263)
106 TIGR01552 phd_fam prevent-host 37.1 73 0.0016 18.5 3.6 27 40-67 5-31 (52)
107 PTZ00170 D-ribulose-5-phosphat 37.1 2.1E+02 0.0045 22.6 8.4 106 44-167 19-125 (228)
108 PHA03003 palmytilated EEV memb 37.0 89 0.0019 26.7 5.5 40 145-190 65-104 (369)
109 cd00984 DnaB_C DnaB helicase C 36.8 82 0.0018 24.6 5.0 46 23-68 123-174 (242)
110 PF04312 DUF460: Protein of un 36.8 48 0.001 24.3 3.2 50 22-71 41-90 (138)
111 COG0468 RecA RecA/RadA recombi 36.7 75 0.0016 26.3 4.7 49 23-71 141-200 (279)
112 PRK03515 ornithine carbamoyltr 36.7 2.2E+02 0.0048 24.2 7.7 107 90-199 109-224 (336)
113 PRK07097 gluconate 5-dehydroge 36.6 1.7E+02 0.0037 23.1 6.9 30 132-162 11-40 (265)
114 cd01563 Thr-synth_1 Threonine 36.5 2.1E+02 0.0046 23.7 7.6 58 126-191 65-122 (324)
115 PRK01158 phosphoglycolate phos 36.5 86 0.0019 24.2 5.0 40 25-64 4-43 (230)
116 PRK00192 mannosyl-3-phosphogly 36.5 69 0.0015 25.8 4.5 42 24-65 4-45 (273)
117 TIGR00185 rRNA_methyl_2 rRNA m 36.2 1.8E+02 0.0038 21.5 7.0 67 133-199 3-71 (153)
118 PTZ00174 phosphomannomutase; P 35.9 80 0.0017 25.1 4.8 41 24-64 5-45 (247)
119 cd05014 SIS_Kpsf KpsF-like pro 35.8 65 0.0014 22.4 3.9 27 42-68 59-85 (128)
120 PRK05854 short chain dehydroge 35.8 1.6E+02 0.0034 24.3 6.7 30 132-162 15-44 (313)
121 PRK12935 acetoacetyl-CoA reduc 35.6 2.1E+02 0.0045 22.1 7.3 29 132-161 7-35 (247)
122 PTZ00256 glutathione peroxidas 35.6 1.2E+02 0.0027 22.8 5.6 41 23-64 41-81 (183)
123 cd05015 SIS_PGI_1 Phosphogluco 35.6 1.2E+02 0.0027 22.3 5.5 42 121-162 9-55 (158)
124 COG5016 Pyruvate/oxaloacetate 35.6 1.6E+02 0.0035 25.9 6.6 67 121-191 160-230 (472)
125 PF00465 Fe-ADH: Iron-containi 35.5 1.3E+02 0.0028 25.5 6.2 65 120-185 12-78 (366)
126 COG2089 SpsE Sialic acid synth 35.4 2.7E+02 0.0059 23.7 7.8 68 118-185 135-205 (347)
127 PRK05654 acetyl-CoA carboxylas 35.3 1E+02 0.0023 25.6 5.4 34 33-66 130-165 (292)
128 cd08187 BDH Butanol dehydrogen 35.2 2.1E+02 0.0045 24.5 7.5 41 121-161 48-91 (382)
129 PRK10358 putative rRNA methyla 35.1 1.3E+02 0.0029 22.3 5.5 43 133-175 3-45 (157)
130 cd01120 RecA-like_NTPases RecA 35.0 59 0.0013 23.1 3.6 48 22-69 84-139 (165)
131 PRK04020 rps2P 30S ribosomal p 34.9 90 0.002 24.5 4.7 36 24-71 116-151 (204)
132 PRK13810 orotate phosphoribosy 34.8 2.1E+02 0.0046 22.0 7.3 36 153-190 119-154 (187)
133 COG0300 DltE Short-chain dehyd 34.7 2.3E+02 0.005 23.2 7.3 50 130-185 5-54 (265)
134 COG3494 Uncharacterized protei 34.7 36 0.00077 27.8 2.5 78 120-199 58-137 (279)
135 PRK12289 GTPase RsgA; Reviewed 34.7 2.2E+02 0.0048 24.3 7.4 103 22-154 90-193 (352)
136 TIGR01487 SPP-like sucrose-pho 34.6 80 0.0017 24.3 4.5 40 26-65 3-42 (215)
137 KOG1208 Dehydrogenases with di 34.5 1.5E+02 0.0034 24.8 6.4 46 132-183 36-81 (314)
138 PRK15025 ureidoglycolate dehyd 34.5 84 0.0018 26.9 4.8 44 23-68 73-116 (349)
139 cd00640 Trp-synth-beta_II Tryp 34.3 2.1E+02 0.0046 22.4 7.0 52 133-191 51-102 (244)
140 PRK15454 ethanol dehydrogenase 34.2 2.7E+02 0.0058 24.1 8.0 42 121-162 68-112 (395)
141 PF13477 Glyco_trans_4_2: Glyc 34.0 76 0.0016 22.1 4.0 31 134-164 2-32 (139)
142 PRK07523 gluconate 5-dehydroge 34.0 2.3E+02 0.0049 22.1 7.4 30 132-162 11-40 (255)
143 cd08188 Fe-ADH4 Iron-containin 33.9 2.8E+02 0.006 23.7 8.0 19 122-140 48-66 (377)
144 PRK13394 3-hydroxybutyrate deh 33.9 2.3E+02 0.0049 22.1 7.1 30 132-162 8-37 (262)
145 PLN03006 carbonate dehydratase 33.8 1.7E+02 0.0037 24.5 6.4 61 88-148 119-188 (301)
146 PRK07200 aspartate/ornithine c 33.8 3.2E+02 0.007 23.8 9.4 67 133-199 189-261 (395)
147 COG1832 Predicted CoA-binding 33.7 1E+02 0.0022 22.7 4.5 46 119-166 6-53 (140)
148 PF02481 DNA_processg_A: DNA r 33.7 1.1E+02 0.0024 23.9 5.2 68 121-191 65-133 (212)
149 cd07939 DRE_TIM_NifV Streptomy 33.6 2.5E+02 0.0054 22.5 7.9 22 43-64 19-40 (259)
150 PRK08862 short chain dehydroge 33.2 2.3E+02 0.005 22.0 7.0 30 132-162 6-35 (227)
151 cd08190 HOT Hydroxyacid-oxoaci 33.2 2.9E+02 0.0062 24.0 8.1 40 122-161 43-85 (414)
152 cd06167 LabA_like LabA_like pr 33.0 1.4E+02 0.0031 21.3 5.4 44 120-165 89-132 (149)
153 TIGR00515 accD acetyl-CoA carb 33.0 1.2E+02 0.0027 25.0 5.5 34 33-66 129-164 (285)
154 PLN02887 hydrolase family prot 33.0 90 0.0019 28.7 5.0 41 24-64 308-348 (580)
155 COG0241 HisB Histidinol phosph 32.8 1.5E+02 0.0033 22.8 5.6 37 151-187 42-86 (181)
156 CHL00174 accD acetyl-CoA carbo 32.8 1.2E+02 0.0026 25.4 5.3 28 39-66 150-177 (296)
157 PRK12562 ornithine carbamoyltr 32.7 2.9E+02 0.0064 23.4 7.8 106 90-198 109-223 (334)
158 PF00106 adh_short: short chai 32.7 1.9E+02 0.004 20.7 6.6 60 121-182 15-75 (167)
159 PF13090 PP_kinase_C: Polyphos 32.7 60 0.0013 27.7 3.6 82 105-189 9-96 (352)
160 TIGR01486 HAD-SF-IIB-MPGP mann 32.4 69 0.0015 25.5 3.9 39 26-64 1-39 (256)
161 PLN00105 malate/L-lactate dehy 32.2 1E+02 0.0022 26.1 5.0 45 22-68 61-106 (330)
162 PRK01713 ornithine carbamoyltr 32.2 2.8E+02 0.0062 23.4 7.7 105 91-198 111-223 (334)
163 cd08192 Fe-ADH7 Iron-containin 32.2 3.2E+02 0.0068 23.2 8.1 19 122-140 44-62 (370)
164 PRK06372 translation initiatio 32.1 1.1E+02 0.0024 24.9 4.9 60 104-168 86-146 (253)
165 PRK08703 short chain dehydroge 32.0 2.1E+02 0.0046 22.0 6.6 16 116-131 16-31 (239)
166 cd01394 radB RadB. The archaea 32.0 75 0.0016 24.5 3.9 45 24-68 104-159 (218)
167 PF00490 ALAD: Delta-aminolevu 32.0 49 0.0011 27.9 2.9 46 123-168 63-122 (324)
168 TIGR02638 lactal_redase lactal 31.9 3E+02 0.0066 23.5 8.0 20 121-140 48-67 (379)
169 TIGR01485 SPP_plant-cyano sucr 31.8 98 0.0021 24.5 4.7 40 25-64 2-44 (249)
170 PRK07109 short chain dehydroge 31.8 2.4E+02 0.0052 23.5 7.2 15 117-131 19-33 (334)
171 PRK08589 short chain dehydroge 31.7 2.3E+02 0.0049 22.5 6.9 29 133-162 8-36 (272)
172 PRK05299 rpsB 30S ribosomal pr 31.6 1.3E+02 0.0028 24.5 5.3 37 23-71 158-194 (258)
173 KOG2862 Alanine-glyoxylate ami 31.5 57 0.0012 27.7 3.2 85 85-170 98-185 (385)
174 PRK04284 ornithine carbamoyltr 31.5 3.2E+02 0.007 23.1 7.8 105 90-197 109-221 (332)
175 COG1087 GalE UDP-glucose 4-epi 31.4 65 0.0014 27.1 3.5 37 133-170 2-38 (329)
176 PF07075 DUF1343: Protein of u 31.4 91 0.002 26.8 4.6 42 23-65 78-119 (365)
177 PLN02618 tryptophan synthase, 31.3 2.6E+02 0.0057 24.4 7.5 61 127-191 115-175 (410)
178 COG3349 Uncharacterized conser 31.3 74 0.0016 28.5 4.1 32 133-166 2-33 (485)
179 PRK06124 gluconate 5-dehydroge 30.7 2.4E+02 0.0052 21.9 6.8 27 113-140 18-44 (256)
180 cd08551 Fe-ADH iron-containing 30.5 3.4E+02 0.0073 23.0 8.5 28 155-182 50-77 (370)
181 PF01408 GFO_IDH_MocA: Oxidore 30.5 1.8E+02 0.0038 19.7 7.4 64 120-187 52-115 (120)
182 PF02481 DNA_processg_A: DNA r 30.4 1.2E+02 0.0025 23.9 4.8 56 132-191 157-212 (212)
183 TIGR01415 trpB_rel pyridoxal-p 30.3 2E+02 0.0044 25.2 6.6 65 124-192 110-174 (419)
184 PRK14567 triosephosphate isome 30.3 1.9E+02 0.0041 23.5 6.0 55 110-164 65-126 (253)
185 TIGR03385 CoA_CoA_reduc CoA-di 30.2 3.2E+02 0.0068 23.5 7.9 68 122-191 128-199 (427)
186 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.1 86 0.0019 21.6 3.7 26 43-68 59-84 (126)
187 TIGR01011 rpsB_bact ribosomal 30.1 1.5E+02 0.0033 23.5 5.4 37 23-71 156-192 (225)
188 COG0258 Exo 5'-3' exonuclease 30.0 70 0.0015 26.6 3.6 45 120-164 99-143 (310)
189 PF02639 DUF188: Uncharacteriz 30.0 1.7E+02 0.0037 21.1 5.2 78 49-139 2-79 (130)
190 PRK12429 3-hydroxybutyrate deh 29.9 2.6E+02 0.0057 21.6 6.9 17 115-131 13-29 (258)
191 cd01121 Sms Sms (bacterial rad 29.9 1.1E+02 0.0024 26.4 4.8 47 22-68 157-211 (372)
192 PRK06139 short chain dehydroge 29.8 2.5E+02 0.0053 23.5 6.9 13 119-131 20-32 (330)
193 PRK07063 short chain dehydroge 29.8 2.7E+02 0.0059 21.7 7.2 30 132-162 8-37 (260)
194 PRK09860 putative alcohol dehy 29.7 3.6E+02 0.0077 23.2 8.0 41 121-161 50-93 (383)
195 cd00885 cinA Competence-damage 29.6 2.5E+02 0.0053 21.1 7.5 62 120-181 22-83 (170)
196 PF13344 Hydrolase_6: Haloacid 29.6 77 0.0017 21.5 3.2 85 27-140 1-89 (101)
197 PRK07035 short chain dehydroge 29.4 2.7E+02 0.0058 21.6 7.1 27 113-140 15-41 (252)
198 TIGR00732 dprA DNA protecting 29.2 2.9E+02 0.0062 21.8 7.9 67 121-190 65-132 (220)
199 PF03447 NAD_binding_3: Homose 29.2 1.9E+02 0.0041 19.8 5.7 65 120-187 49-113 (117)
200 PF00588 SpoU_methylase: SpoU 29.2 2.1E+02 0.0047 20.3 6.0 44 133-176 3-48 (142)
201 cd06327 PBP1_SBP_like_1 Peripl 29.1 3.2E+02 0.0069 22.3 8.8 43 120-162 124-169 (334)
202 PF00185 OTCace: Aspartate/orn 29.0 2.3E+02 0.0051 20.9 6.0 68 132-199 3-72 (158)
203 PRK12815 carB carbamoyl phosph 29.0 94 0.002 30.7 4.8 37 130-166 554-599 (1068)
204 PF03102 NeuB: NeuB family; I 28.9 49 0.0011 26.7 2.4 115 43-186 55-172 (241)
205 KOG0029 Amine oxidase [Seconda 28.8 88 0.0019 28.1 4.2 39 129-169 13-53 (501)
206 PRK09620 hypothetical protein; 28.7 1.3E+02 0.0027 24.0 4.7 92 108-199 21-140 (229)
207 PRK10624 L-1,2-propanediol oxi 28.6 3.7E+02 0.0081 22.9 8.1 21 122-142 50-70 (382)
208 cd05710 SIS_1 A subgroup of th 28.4 1E+02 0.0023 21.4 3.9 27 42-68 59-85 (120)
209 PF03796 DnaB_C: DnaB-like hel 28.3 1.6E+02 0.0034 23.5 5.4 48 22-69 129-182 (259)
210 TIGR03316 ygeW probable carbam 28.1 3.9E+02 0.0084 22.9 8.2 65 133-198 172-243 (357)
211 cd00382 beta_CA Carbonic anhyd 28.1 1.1E+02 0.0025 21.5 4.0 44 103-146 24-73 (119)
212 PRK07814 short chain dehydroge 28.0 3E+02 0.0065 21.6 7.0 24 115-139 19-42 (263)
213 TIGR00099 Cof-subfamily Cof su 28.0 97 0.0021 24.5 4.1 39 26-64 1-39 (256)
214 cd03012 TlpA_like_DipZ_like Tl 27.9 99 0.0021 21.5 3.7 39 26-64 25-63 (126)
215 PRK12743 oxidoreductase; Provi 27.6 3E+02 0.0065 21.5 6.9 29 133-162 4-32 (256)
216 COG2870 RfaE ADP-heptose synth 27.6 90 0.002 27.4 3.8 41 23-63 113-177 (467)
217 cd04165 GTPBP1_like GTPBP1-lik 27.5 2E+02 0.0042 22.7 5.7 38 21-65 109-146 (224)
218 PRK07831 short chain dehydroge 27.3 2.6E+02 0.0057 21.8 6.5 18 119-137 31-48 (262)
219 PF08423 Rad51: Rad51; InterP 27.3 1.1E+02 0.0024 24.7 4.3 49 22-70 132-191 (256)
220 PRK10736 hypothetical protein; 27.3 2.7E+02 0.0059 24.1 6.8 65 132-199 220-284 (374)
221 PRK08594 enoyl-(acyl carrier p 27.3 2.8E+02 0.0061 21.8 6.7 31 132-162 8-39 (257)
222 PRK04148 hypothetical protein; 27.2 1.8E+02 0.0039 21.2 4.9 10 133-142 19-28 (134)
223 KOG0210 P-type ATPase [Inorgan 27.2 66 0.0014 30.4 3.1 70 123-194 667-738 (1051)
224 KOG1014 17 beta-hydroxysteroid 27.1 1.3E+02 0.0028 25.3 4.6 52 124-182 43-94 (312)
225 PRK01438 murD UDP-N-acetylmura 27.1 2.2E+02 0.0049 25.0 6.5 14 149-162 32-45 (480)
226 PRK06181 short chain dehydroge 26.8 3.1E+02 0.0067 21.4 7.2 19 118-137 13-31 (263)
227 PRK13803 bifunctional phosphor 26.8 1.9E+02 0.004 26.8 6.0 61 127-191 314-374 (610)
228 cd06448 L-Ser-dehyd Serine deh 26.8 2.6E+02 0.0056 23.2 6.5 51 131-189 51-101 (316)
229 PRK05755 DNA polymerase I; Pro 26.7 1.3E+02 0.0028 29.1 5.2 44 120-163 89-132 (880)
230 PTZ00056 glutathione peroxidas 26.7 1.5E+02 0.0031 22.9 4.7 39 26-64 41-79 (199)
231 PLN03050 pyridoxine (pyridoxam 26.7 3.2E+02 0.007 22.0 6.8 54 132-187 62-116 (246)
232 cd08176 LPO Lactadehyde:propan 26.6 4E+02 0.0087 22.7 7.9 18 122-139 48-65 (377)
233 COG0533 QRI7 Metal-dependent p 26.6 3.1E+02 0.0067 23.5 6.8 60 124-183 255-317 (342)
234 TIGR01681 HAD-SF-IIIC HAD-supe 26.6 2E+02 0.0043 20.3 5.1 41 26-66 2-54 (128)
235 PRK07453 protochlorophyllide o 26.5 2.8E+02 0.0061 22.7 6.7 29 133-162 8-36 (322)
236 PRK12744 short chain dehydroge 26.5 3.1E+02 0.0068 21.3 6.9 29 133-162 10-38 (257)
237 PRK05867 short chain dehydroge 26.5 3.1E+02 0.0067 21.3 7.4 13 119-131 22-34 (253)
238 TIGR01917 gly_red_sel_B glycin 26.4 1E+02 0.0022 27.1 4.0 46 120-166 326-374 (431)
239 TIGR00329 gcp_kae1 metallohydr 26.4 1.2E+02 0.0025 25.2 4.3 39 126-164 254-294 (305)
240 PRK13396 3-deoxy-7-phosphohept 26.2 3.6E+02 0.0077 23.2 7.2 73 104-176 207-289 (352)
241 PRK09186 flagellin modificatio 26.0 3.1E+02 0.0068 21.2 7.1 22 116-138 14-35 (256)
242 PF13478 XdhC_C: XdhC Rossmann 25.9 95 0.0021 22.5 3.3 32 134-167 1-32 (136)
243 COG2074 2-phosphoglycerate kin 25.8 95 0.0021 25.6 3.5 55 3-64 139-193 (299)
244 COG1058 CinA Predicted nucleot 25.8 3.2E+02 0.0069 22.3 6.6 75 120-198 24-100 (255)
245 PRK06924 short chain dehydroge 25.6 1.4E+02 0.003 23.2 4.5 23 116-139 11-33 (251)
246 cd05005 SIS_PHI Hexulose-6-pho 25.6 1.2E+02 0.0025 22.8 3.9 28 42-69 87-114 (179)
247 PRK08643 acetoin reductase; Va 25.6 3.2E+02 0.007 21.2 7.0 21 117-138 13-33 (256)
248 PRK07533 enoyl-(acyl carrier p 25.2 1.4E+02 0.003 23.7 4.5 30 132-161 11-41 (258)
249 PRK06079 enoyl-(acyl carrier p 25.2 1.4E+02 0.003 23.6 4.4 31 132-162 8-39 (252)
250 PRK05976 dihydrolipoamide dehy 25.2 4.5E+02 0.0097 23.0 8.0 60 131-192 180-242 (472)
251 PF06971 Put_DNA-bind_N: Putat 25.1 82 0.0018 18.7 2.3 25 175-199 15-39 (50)
252 PF00861 Ribosomal_L18p: Ribos 25.1 1.9E+02 0.004 20.5 4.6 40 120-159 78-119 (119)
253 PF08534 Redoxin: Redoxin; In 25.1 1.3E+02 0.0027 21.4 3.9 42 26-67 30-72 (146)
254 TIGR02964 xanthine_xdhC xanthi 25.1 1.3E+02 0.0029 24.1 4.3 34 130-165 99-132 (246)
255 PF05222 AlaDh_PNT_N: Alanine 24.9 2.1E+02 0.0046 20.7 5.0 43 147-196 18-63 (136)
256 cd08181 PPD-like 1,3-propanedi 24.9 4.3E+02 0.0092 22.4 8.0 41 121-161 45-88 (357)
257 PRK04346 tryptophan synthase s 24.8 3.7E+02 0.0081 23.4 7.3 60 127-190 102-161 (397)
258 PRK06505 enoyl-(acyl carrier p 24.8 1.4E+02 0.003 24.0 4.4 31 132-162 8-39 (271)
259 PRK05876 short chain dehydroge 24.7 3.2E+02 0.007 21.8 6.6 27 113-140 13-39 (275)
260 cd06359 PBP1_Nba_like Type I p 24.7 3.9E+02 0.0084 21.8 8.6 28 119-146 122-149 (333)
261 cd01828 sialate_O-acetylestera 24.7 2.5E+02 0.0054 20.3 5.5 27 39-65 67-95 (169)
262 KOG1712 Adenine phosphoribosyl 24.7 78 0.0017 24.1 2.6 43 150-194 116-158 (183)
263 PF00291 PALP: Pyridoxal-phosp 24.6 2.5E+02 0.0055 22.6 6.0 56 126-189 51-106 (306)
264 PLN03209 translocon at the inn 24.5 3.9E+02 0.0085 24.6 7.5 32 130-162 79-110 (576)
265 TIGR01918 various_sel_PB selen 24.5 1.1E+02 0.0025 26.8 4.0 44 120-164 326-372 (431)
266 TIGR01361 DAHP_synth_Bsub phos 24.4 3.9E+02 0.0084 21.7 8.3 119 43-169 75-207 (260)
267 smart00870 Asparaginase Aspara 24.3 2.6E+02 0.0057 23.4 6.1 51 119-169 224-277 (323)
268 COG1412 Uncharacterized protei 24.3 92 0.002 22.8 2.9 22 45-66 105-126 (136)
269 PRK12939 short chain dehydroge 24.3 3.3E+02 0.0072 20.9 7.0 22 116-138 17-38 (250)
270 PRK08277 D-mannonate oxidoredu 24.0 3.6E+02 0.0079 21.3 7.1 22 117-139 21-42 (278)
271 PRK15492 triosephosphate isome 23.9 3.2E+02 0.0069 22.3 6.3 55 111-165 75-136 (260)
272 PRK08265 short chain dehydroge 23.9 2.9E+02 0.0062 21.7 6.1 29 133-162 8-36 (261)
273 PRK03094 hypothetical protein; 23.9 76 0.0016 21.0 2.2 28 129-162 34-61 (80)
274 cd01884 EF_Tu EF-Tu subfamily. 23.9 1.7E+02 0.0037 22.4 4.6 35 18-59 85-119 (195)
275 PRK13600 putative ribosomal pr 23.9 1E+02 0.0023 20.5 2.9 21 45-65 43-63 (84)
276 PRK14031 glutamate dehydrogena 23.8 2.7E+02 0.0058 24.7 6.2 45 122-168 215-263 (444)
277 PRK00779 ornithine carbamoyltr 23.8 4.3E+02 0.0093 22.0 8.2 100 92-198 109-215 (304)
278 PRK03670 competence damage-ind 23.7 3.7E+02 0.008 21.7 6.7 53 120-172 23-76 (252)
279 PRK11823 DNA repair protein Ra 23.7 1.6E+02 0.0035 26.0 4.9 47 22-68 155-209 (446)
280 cd01427 HAD_like Haloacid deha 23.7 88 0.0019 21.1 2.8 40 27-66 2-49 (139)
281 PTZ00254 40S ribosomal protein 23.6 1.7E+02 0.0037 23.8 4.6 34 25-70 121-154 (249)
282 PRK07231 fabG 3-ketoacyl-(acyl 23.5 3E+02 0.0065 21.1 6.1 27 114-141 13-39 (251)
283 PRK01710 murD UDP-N-acetylmura 23.4 2.3E+02 0.0049 24.9 5.8 30 131-162 14-43 (458)
284 COG0647 NagD Predicted sugar p 23.4 1.2E+02 0.0027 24.8 3.8 43 25-68 9-51 (269)
285 cd04448 DEP_PIKfyve DEP (Dishe 23.4 1.7E+02 0.0037 19.1 3.9 47 111-164 23-69 (81)
286 TIGR00658 orni_carb_tr ornithi 23.3 4.4E+02 0.0095 21.9 8.7 101 93-197 106-213 (304)
287 PRK06300 enoyl-(acyl carrier p 23.2 1.5E+02 0.0032 24.6 4.3 32 131-162 8-40 (299)
288 COG3598 RepA RecA-family ATPas 23.1 1.3E+02 0.0028 25.8 3.9 49 21-69 192-244 (402)
289 PF00318 Ribosomal_S2: Ribosom 23.1 1.9E+02 0.0042 22.5 4.8 36 23-70 144-179 (211)
290 TIGR02415 23BDH acetoin reduct 23.0 3.6E+02 0.0077 20.8 7.2 19 119-138 13-31 (254)
291 PRK04301 radA DNA repair and r 23.0 1.5E+02 0.0032 24.6 4.4 48 22-69 197-255 (317)
292 PRK07890 short chain dehydroge 23.0 3.6E+02 0.0078 20.8 6.6 21 117-138 16-36 (258)
293 PLN02399 phospholipid hydroper 23.0 1.6E+02 0.0035 23.6 4.4 39 26-64 101-139 (236)
294 TIGR01484 HAD-SF-IIB HAD-super 23.0 1.3E+02 0.0028 22.7 3.8 39 26-64 1-40 (204)
295 PRK12595 bifunctional 3-deoxy- 23.0 4.9E+02 0.011 22.3 7.9 17 125-141 247-265 (360)
296 PRK07102 short chain dehydroge 23.0 1.7E+02 0.0037 22.6 4.6 16 147-162 16-31 (243)
297 PRK07591 threonine synthase; V 22.9 4.9E+02 0.011 22.7 7.8 59 125-191 131-189 (421)
298 PF01740 STAS: STAS domain; I 22.9 1.9E+02 0.004 19.6 4.3 41 24-66 48-89 (117)
299 cd02964 TryX_like_family Trypa 22.9 1.9E+02 0.004 20.3 4.4 40 26-65 19-60 (132)
300 TIGR02478 6PF1K_euk 6-phosphof 22.8 1.8E+02 0.0039 27.6 5.2 87 44-143 17-107 (745)
301 PF12404 DUF3663: Peptidase ; 22.8 82 0.0018 20.7 2.2 17 123-139 44-60 (77)
302 PRK07454 short chain dehydroge 22.8 3.6E+02 0.0077 20.7 7.1 29 133-162 8-36 (241)
303 TIGR03127 RuMP_HxlB 6-phospho 22.8 1.4E+02 0.003 22.3 3.9 28 42-69 84-111 (179)
304 PRK06997 enoyl-(acyl carrier p 22.8 1.6E+02 0.0035 23.3 4.4 31 132-162 7-38 (260)
305 TIGR02884 spore_pdaA delta-lac 22.6 3.8E+02 0.0082 21.0 7.2 75 119-195 141-224 (224)
306 PF13580 SIS_2: SIS domain; PD 22.6 1.2E+02 0.0026 21.7 3.4 21 43-63 116-136 (138)
307 cd00884 beta_CA_cladeB Carboni 22.6 3.3E+02 0.0072 21.0 5.9 47 103-149 47-104 (190)
308 PRK07985 oxidoreductase; Provi 22.5 4.2E+02 0.0091 21.4 7.2 30 132-162 50-79 (294)
309 TIGR00789 flhB_rel flhB C-term 22.5 95 0.0021 20.5 2.5 20 44-63 27-46 (82)
310 PRK07666 fabG 3-ketoacyl-(acyl 22.5 3.6E+02 0.0078 20.6 7.3 26 114-140 15-40 (239)
311 COG0078 ArgF Ornithine carbamo 22.5 4.7E+02 0.01 22.0 8.6 69 130-199 152-220 (310)
312 smart00775 LNS2 LNS2 domain. T 22.5 1.4E+02 0.0031 22.0 3.8 25 41-65 27-51 (157)
313 cd01885 EF2 EF2 (for archaea a 22.4 1.8E+02 0.0038 23.0 4.5 40 19-65 94-133 (222)
314 PRK11858 aksA trans-homoaconit 22.4 5E+02 0.011 22.3 8.0 22 43-64 25-46 (378)
315 COG0665 DadA Glycine/D-amino a 22.4 1.5E+02 0.0032 24.8 4.4 33 132-166 5-37 (387)
316 PRK12859 3-ketoacyl-(acyl-carr 22.4 3.8E+02 0.0083 20.9 7.6 30 132-161 7-37 (256)
317 cd01124 KaiC KaiC is a circadi 22.3 1.8E+02 0.004 21.4 4.5 46 23-68 95-141 (187)
318 PRK08309 short chain dehydroge 22.3 1.8E+02 0.0039 22.0 4.4 28 133-162 2-29 (177)
319 PRK06935 2-deoxy-D-gluconate 3 22.3 1.6E+02 0.0035 23.1 4.3 30 132-162 16-45 (258)
320 PRK02255 putrescine carbamoylt 22.2 4.9E+02 0.011 22.1 8.0 102 93-198 109-220 (338)
321 TIGR02798 ligK_PcmE 4-carboxy- 22.2 2.1E+02 0.0046 22.7 4.9 55 103-163 74-131 (222)
322 cd00883 beta_CA_cladeA Carboni 22.1 2.7E+02 0.0058 21.2 5.3 48 103-150 46-99 (182)
323 TIGR00520 asnASE_II L-asparagi 22.1 3.3E+02 0.0071 23.2 6.3 50 119-168 251-303 (349)
324 cd02922 FCB2_FMN Flavocytochro 22.0 3.6E+02 0.0078 23.0 6.5 40 123-166 205-244 (344)
325 TIGR03600 phage_DnaB phage rep 22.0 2E+02 0.0044 24.9 5.2 47 23-69 305-356 (421)
326 TIGR03722 arch_KAE1 universal 21.9 1.6E+02 0.0035 24.6 4.4 38 127-164 239-278 (322)
327 PRK10886 DnaA initiator-associ 21.9 1.4E+02 0.0031 23.1 3.8 25 42-66 121-145 (196)
328 PLN02412 probable glutathione 21.8 2.2E+02 0.0047 21.1 4.7 40 26-65 31-70 (167)
329 PF00710 Asparaginase: Asparag 21.8 4.5E+02 0.0098 21.9 7.0 48 120-168 215-265 (313)
330 PRK12829 short chain dehydroge 21.8 2.6E+02 0.0057 21.7 5.5 22 116-138 21-42 (264)
331 TIGR01482 SPP-subfamily Sucros 21.8 1.3E+02 0.0028 23.1 3.6 38 27-64 1-38 (225)
332 PRK07476 eutB threonine dehydr 21.7 4.3E+02 0.0093 21.9 6.9 59 126-191 61-119 (322)
333 PLN02780 ketoreductase/ oxidor 21.7 3.4E+02 0.0074 22.4 6.3 27 114-141 61-87 (320)
334 TIGR03217 4OH_2_O_val_ald 4-hy 21.7 4.9E+02 0.011 21.9 11.3 65 126-190 96-161 (333)
335 PLN02494 adenosylhomocysteinas 21.7 2.8E+02 0.0061 24.9 5.9 42 120-163 239-284 (477)
336 cd08193 HVD 5-hydroxyvalerate 21.6 5.1E+02 0.011 22.0 8.4 18 122-139 46-63 (376)
337 cd01078 NAD_bind_H4MPT_DH NADP 21.6 3.6E+02 0.0078 20.3 8.4 40 123-163 16-59 (194)
338 TIGR02873 spore_ylxY probable 21.5 4.5E+02 0.0097 21.4 7.4 76 118-196 187-268 (268)
339 cd06547 GH85_ENGase Endo-beta- 21.4 61 0.0013 27.5 1.7 20 47-66 49-68 (339)
340 TIGR01832 kduD 2-deoxy-D-gluco 21.4 1.9E+02 0.0041 22.4 4.5 13 119-131 18-30 (248)
341 PRK12319 acetyl-CoA carboxylas 21.4 1.4E+02 0.003 24.3 3.8 29 40-68 81-109 (256)
342 cd04795 SIS SIS domain. SIS (S 21.4 1.5E+02 0.0032 18.7 3.4 22 43-64 60-81 (87)
343 cd01122 GP4d_helicase GP4d_hel 21.4 1.6E+02 0.0035 23.5 4.2 46 23-68 140-192 (271)
344 COG2055 Malate/L-lactate dehyd 21.4 2.5E+02 0.0054 24.1 5.3 45 22-68 75-119 (349)
345 PRK04147 N-acetylneuraminate l 21.3 4E+02 0.0087 21.8 6.6 26 121-146 28-54 (293)
346 PRK08206 diaminopropionate amm 21.2 3.8E+02 0.0083 23.2 6.7 49 136-190 119-167 (399)
347 TIGR02238 recomb_DMC1 meiotic 21.1 1.6E+02 0.0035 24.6 4.2 51 20-70 188-249 (313)
348 cd04824 eu_ALAD_PBGS_cysteine_ 21.1 2.1E+02 0.0045 24.2 4.7 46 123-168 57-117 (320)
349 TIGR01377 soxA_mon sarcosine o 21.1 1.5E+02 0.0032 24.8 4.1 30 134-165 3-32 (380)
350 PRK06949 short chain dehydroge 21.0 4E+02 0.0086 20.6 7.2 24 115-139 18-41 (258)
351 PRK05866 short chain dehydroge 21.0 4.5E+02 0.0098 21.2 7.0 24 115-139 49-72 (293)
352 cd05313 NAD_bind_2_Glu_DH NAD( 21.0 4.6E+02 0.01 21.3 8.8 45 122-168 25-73 (254)
353 PRK07774 short chain dehydroge 20.9 3.9E+02 0.0085 20.5 7.1 16 116-131 16-31 (250)
354 KOG0259 Tyrosine aminotransfer 20.9 1.9E+02 0.0042 25.3 4.5 47 16-64 193-239 (447)
355 PRK06077 fabG 3-ketoacyl-(acyl 20.9 3.9E+02 0.0085 20.5 7.1 29 132-161 7-35 (252)
356 TIGR00513 accA acetyl-CoA carb 20.9 2.8E+02 0.0061 23.4 5.5 29 40-68 134-162 (316)
357 PRK08217 fabG 3-ketoacyl-(acyl 20.8 3.9E+02 0.0085 20.4 6.9 22 116-138 15-36 (253)
358 PRK05500 bifunctional orotidin 20.7 4.9E+02 0.011 23.3 7.3 64 121-188 335-423 (477)
359 cd05006 SIS_GmhA Phosphoheptos 20.7 1.6E+02 0.0035 21.9 3.9 27 42-68 113-139 (177)
360 PRK07818 dihydrolipoamide dehy 20.7 5.7E+02 0.012 22.3 8.3 61 130-192 171-234 (466)
361 cd01075 NAD_bind_Leu_Phe_Val_D 20.7 4E+02 0.0087 20.5 6.3 28 132-161 29-56 (200)
362 cd02970 PRX_like2 Peroxiredoxi 20.6 2.3E+02 0.0051 19.8 4.6 42 25-66 25-66 (149)
363 PF13506 Glyco_transf_21: Glyc 20.6 3.7E+02 0.0081 20.1 6.2 61 130-190 2-65 (175)
364 PF08134 cIII: cIII protein fa 20.5 1.2E+02 0.0026 17.1 2.2 22 35-56 15-36 (44)
365 PRK14072 6-phosphofructokinase 20.5 5E+02 0.011 22.7 7.2 90 42-143 18-116 (416)
366 PRK13028 tryptophan synthase s 20.5 5.1E+02 0.011 22.6 7.2 61 127-191 106-166 (402)
367 PF08821 CGGC: CGGC domain; I 20.4 3.1E+02 0.0067 19.1 5.2 56 133-189 37-103 (107)
368 PRK05693 short chain dehydroge 20.4 2E+02 0.0044 22.7 4.6 13 119-131 14-26 (274)
369 PRK10864 putative methyltransf 20.4 5.5E+02 0.012 22.0 8.2 53 120-172 185-239 (346)
370 PF02615 Ldh_2: Malate/L-lacta 20.3 1.2E+02 0.0025 25.8 3.2 44 23-68 73-116 (335)
371 cd00764 Eukaryotic_PFK Phospho 20.3 1.9E+02 0.0042 27.5 4.9 84 42-143 18-110 (762)
372 PRK08017 oxidoreductase; Provi 20.3 2.1E+02 0.0045 22.2 4.6 25 114-139 10-34 (256)
373 TIGR00416 sms DNA repair prote 20.2 2.2E+02 0.0047 25.3 5.0 47 22-68 169-223 (454)
374 PRK10349 carboxylesterase BioH 20.2 4.1E+02 0.009 20.5 6.5 65 119-183 185-254 (256)
375 PRK04965 NADH:flavorubredoxin 20.2 5.3E+02 0.011 21.7 7.9 60 130-191 140-203 (377)
376 TIGR00441 gmhA phosphoheptose 20.1 1.8E+02 0.0038 21.3 3.9 26 42-67 91-116 (154)
377 PRK15138 aldehyde reductase; P 20.1 3.9E+02 0.0085 23.0 6.5 32 130-161 56-90 (387)
378 PRK07775 short chain dehydroge 20.0 4.5E+02 0.0097 20.8 7.3 24 113-137 17-40 (274)
No 1
>PLN02621 nicotinamidase
Probab=100.00 E-value=1.5e-47 Score=299.38 Aligned_cols=196 Identities=74% Similarity=1.208 Sum_probs=179.6
Q ss_pred CCCcccchhhhhhhhccCCCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCcccccccc
Q 028963 1 MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWW 80 (201)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~ 80 (201)
||+||-..| ...+..++++++|||+|||||+|.+....+++++++|++.||..|+||||+++.+.++.+++.+..||
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~aLlvID~Q~~f~~~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~~~~~~~~ 77 (197)
T PLN02621 1 MAASSYKKY---ETRKRDPDPKQAALLVIDMQNYFSSMAEPILPALLTTIDLCRRASIPVFFTRHSHKSPSDYGMLGEWW 77 (197)
T ss_pred CCcchhhhh---ccccCCCCCCCEEEEEEeChhhhhhhHHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcchhhhhhhhc
Confidence 666655555 57777889999999999999999877778999999999999999999999999997666566678889
Q ss_pred CCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEE
Q 028963 81 NGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVF 160 (201)
Q Consensus 81 ~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~ 160 (201)
+.+.|..|++|++++++|++. .+++.+|.|++||+|.+|+|.++|+++|+++|||+|++|++||++|+++|+++||+|+
T Consensus 78 ~~~~~~~gs~g~~i~~~L~~~-~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~ 156 (197)
T PLN02621 78 DGDLILDGTTEAELMPEIGRV-TGPDEVVEKSTYSAFYNTRLEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVF 156 (197)
T ss_pred CCccccCCCCccccchhccCC-CCCCEEEECCCcCCCCCCcHHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCCEEE
Confidence 988899999999999999883 4678999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhcC
Q 028963 161 FSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFG 200 (201)
Q Consensus 161 vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~~ 200 (201)
|++|||++.+++.|+.+|..|...|++|+++++++.+|-+
T Consensus 157 v~~Da~as~~~~~h~~al~~~~~~~~~v~~~~~~~~~~~~ 196 (197)
T PLN02621 157 FSTDATATANEELHEATLKNLAYGFAYLVDCDRLEAGLLK 196 (197)
T ss_pred EeccccCCCCHHHHHHHHHHHHhhceEeecHHHHHHHHhc
Confidence 9999999999999999999999999999999999988754
No 2
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=3.4e-43 Score=272.95 Aligned_cols=177 Identities=22% Similarity=0.319 Sum_probs=153.8
Q ss_pred CCCCCCeEEEEEeccCccCCC------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCC-c--cccccccCCCccccC
Q 028963 18 NPNPKSSVLLVIDMQNHFSSI------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPAD-Y--GMLGEWWNGDLVYDG 88 (201)
Q Consensus 18 ~~~~~~~aLlviD~Q~~f~~~------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~-~--~~~~~~~~~~~~~~g 88 (201)
.++++++|||||||||+|++. .+.+++++++|+++||+.|+||||+++.+.+... . .......+.+ +..+
T Consensus 3 ~l~~~~~ALlvID~Qn~f~~~~~~~~~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (188)
T PRK11440 3 ELNAKTTALVVIDLQEGILPFAGGPHTADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEALKQPVDAPSPAK-VLPE 81 (188)
T ss_pred CCCCCCEEEEEEecccccccCCCCcchHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhccCccccccccc-ccCC
Confidence 467889999999999999852 3578999999999999999999999987653211 0 0011112233 5666
Q ss_pred CCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 89 ~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
++ ++++|+|.| .++|.+|.|++||+|++|+|+.+|+++|+++|+|+|+.|++||.+|+++|+++||+|+|++|||++
T Consensus 82 ~~-~~~~~~l~~--~~~d~vi~K~~~saF~~T~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~as 158 (188)
T PRK11440 82 NW-WQHPAALGK--TDSDIEVTKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSA 158 (188)
T ss_pred cc-cccCcccCC--CCCCEEEecCCcCCCCCCCHHHHHHHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhcC
Confidence 66 799999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 169 SDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 169 ~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
.+++.|+.+|+.+...++.|++++|+++.|
T Consensus 159 ~~~~~h~~al~~~~~~~a~v~~~~~~~~~l 188 (188)
T PRK11440 159 ASAEQHQNSMNHIFPRIARVRSVEEILNAL 188 (188)
T ss_pred CCHHHHHHHHHHHHhheeEEeeHHHHHhhC
Confidence 999999999999988999999999999865
No 3
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=1.2e-42 Score=272.74 Aligned_cols=174 Identities=31% Similarity=0.498 Sum_probs=152.5
Q ss_pred ccCCCCCCeEEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCCC-CCccccccccCCCcccc
Q 028963 16 KRNPNPKSSVLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKSP-ADYGMLGEWWNGDLVYD 87 (201)
Q Consensus 16 ~~~~~~~~~aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (201)
...++++++|||||||||+|+.. .+.+++++++|+++||+.|+||||+++.+... .........|+.+ +..
T Consensus 22 ~~~l~~~~tALlvID~Q~~f~~~~~~~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~~~~~~~-~~~ 100 (203)
T cd01013 22 DWQIDPKRAVLLVHDMQRYFLDFYDESAEPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLNDFWGPG-LTA 100 (203)
T ss_pred CCCCCCCcEEEEEEeChhhhhCccccccchHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHHHHhhcc-CCC
Confidence 44478899999999999999853 24689999999999999999999999765421 1111122356555 566
Q ss_pred CCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCC
Q 028963 88 GTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATA 167 (201)
Q Consensus 88 g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~ 167 (201)
|++|++++++|.+ .+++.+|+|++||+|++|+|+++|+++|+++|+|+|+.|++||++||++|+++||+|+|++|||+
T Consensus 101 ~~~~~~~~~~l~~--~~~d~vi~K~~~saF~~T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~a 178 (203)
T cd01013 101 SPEETKIVTELAP--QPDDTVLTKWRYSAFKRSPLLERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIA 178 (203)
T ss_pred CCCccccccccCC--CCCCEEEeCCCcCCcCCCCHHHHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccC
Confidence 8899999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 168 TSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 168 ~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
+.+++.|+.+|..|...+++|++++
T Consensus 179 s~~~~~h~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 179 DFSLEEHRMALKYAATRCAMVVSTD 203 (203)
T ss_pred CCCHHHHHHHHHHHHhheeEeeecC
Confidence 9999999999999999999999874
No 4
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=8.4e-42 Score=269.78 Aligned_cols=173 Identities=25% Similarity=0.435 Sum_probs=153.2
Q ss_pred CCeEEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCC-cc---------------cccc
Q 028963 22 KSSVLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPAD-YG---------------MLGE 78 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~-~~---------------~~~~ 78 (201)
+++|||||||||+|++. .+.+++++++|+++||+.|+||||++++|++... +. ....
T Consensus 1 m~~ALlvID~Qndf~~~g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T PRK11609 1 MKRALLLVDLQNDFCAGGALAVPEGDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGELDGLPQT 80 (212)
T ss_pred CCcEEEEEeCCccCCCCCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCccccccCCcccc
Confidence 47899999999999852 3568999999999999999999999988764321 00 0113
Q ss_pred ccCCCccccCCCCccccccccCCCCCCCEEEECC------CCCCCC------CCchHHHHHhCCCcEEEEeeccCchhHH
Q 028963 79 WWNGDLVYDGTADAELLPEIKGLVAGADEVIEKN------TYSAFG------NTRLQERLVGMGVEEVIVCGVMTNLCCE 146 (201)
Q Consensus 79 ~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~------~~saf~------~t~L~~~L~~~gi~~lvi~G~~T~~CV~ 146 (201)
+||.| |.+|++|++++|+|.+ .+++.+|.|+ +||+|+ +|+|+.+|+++||++|+|+|++|++||+
T Consensus 81 ~~~~~-~~~gt~g~el~~~l~~--~~~d~vi~K~~~~~~~~~SaF~~~~~~~~T~L~~~L~~~gi~~lii~G~~T~~CV~ 157 (212)
T PRK11609 81 WWPDH-CVQNSEGAALHPLLNQ--KAIDAVFHKGENPLIDSYSAFFDNGHRQKTALDDWLREHGITELIVMGLATDYCVK 157 (212)
T ss_pred cCccc-ccCCCCcCccChhhcc--cCCCEEEECCCCCCCcccccccCCCCCCCccHHHHHHHcCCCEEEEEEeccCHHHH
Confidence 68877 9999999999999999 8889999996 799998 6999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCCCC--HHHHHHHHHHHhhcceEEeeHHHHHHh
Q 028963 147 TTARDAFVRGFRVFFSTDATATSD--LELHEATLKNLAYGFAYLFDCERLEAG 197 (201)
Q Consensus 147 ~Ta~~a~~~G~~v~vv~Da~~~~~--~~~h~~al~~l~~~~~~v~~~~e~~~~ 197 (201)
+||++|.++||+|+|++|||++.+ ++.|+.+++.|...++.|+++++++..
T Consensus 158 ~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~~~~~~~ 210 (212)
T PRK11609 158 FTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTLADWEET 210 (212)
T ss_pred HHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEHHHHHhh
Confidence 999999999999999999999984 888999999999999999999998764
No 5
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=6.5e-42 Score=272.73 Aligned_cols=181 Identities=28% Similarity=0.423 Sum_probs=156.8
Q ss_pred CCCCCCeEEEEEeccCccCCC-------------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCC-------C--ccc
Q 028963 18 NPNPKSSVLLVIDMQNHFSSI-------------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPA-------D--YGM 75 (201)
Q Consensus 18 ~~~~~~~aLlviD~Q~~f~~~-------------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~-------~--~~~ 75 (201)
.++++++|||||||||+|+.+ ...++++++++++.||+.|+||||+++.+.+.. . +..
T Consensus 10 ~~~~~~tALlvID~Qn~f~~~~~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T TIGR03614 10 TLDPEQTALIVVDMQNAYATPGGYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEAGGPGSPNWHK 89 (226)
T ss_pred ccCCCCEEEEEEechhhhhCCCcccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhhccCCCcccccc
Confidence 377889999999999999853 245899999999999999999999998765320 0 100
Q ss_pred ccc--------ccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHH
Q 028963 76 LGE--------WWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCET 147 (201)
Q Consensus 76 ~~~--------~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~ 147 (201)
... -+....+..|++|++++++|.+ .++|.+|.|++||+|++|+|+.+|+++||++|||+|+.|++||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~p--~~~d~vi~K~~~saF~~T~L~~~Lr~~gI~~lvi~Gv~T~~CV~s 167 (226)
T TIGR03614 90 SNALKTMRKRPELQGKLLAKGTWDYELVDELQP--QPGDIVLPKPRYSGFFNTPLDSMLRARGIRNLVFTGIATNVCVES 167 (226)
T ss_pred cccccccccCcccccceeecCCCCcccCcccCC--CCCCEEEeCCCcCCCCCCCHHHHHHHCCCCEEEEeccCccHhHHH
Confidence 000 0112347889999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEecCCCCCCCH-HHHHHHHHHHhhcceEEeeHHHHHHhhcC
Q 028963 148 TARDAFVRGFRVFFSTDATATSDL-ELHEATLKNLAYGFAYLFDCERLEAGLFG 200 (201)
Q Consensus 148 Ta~~a~~~G~~v~vv~Da~~~~~~-~~h~~al~~l~~~~~~v~~~~e~~~~l~~ 200 (201)
|+++|+++||+|+|++|||++.++ +.|+.++..|...++.|++++++++.|..
T Consensus 168 Tar~A~~~Gy~v~vv~Da~a~~~~~~~h~~~l~~l~~~~~~v~~~~~~~~~l~~ 221 (226)
T TIGR03614 168 TLRDGFHLEYFGVVLEDATHQAGPDFMQKAALYNIETFFGWVSDVADFCGTFSQ 221 (226)
T ss_pred HHHHHHHCCCEEEEechhccCCCchHHHHHHHHHHHhHheeeecHHHHHHHHhh
Confidence 999999999999999999999875 68999999999999999999999998864
No 6
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=1.5e-42 Score=265.65 Aligned_cols=167 Identities=42% Similarity=0.576 Sum_probs=148.7
Q ss_pred eEEEEEeccCccCC------CchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCC-ccccccccCCCccccCCCCccccc
Q 028963 24 SVLLVIDMQNHFSS------IAKPILDNTLATVQLCRRASIPVFFTRHCHKSPAD-YGMLGEWWNGDLVYDGTADAELLP 96 (201)
Q Consensus 24 ~aLlviD~Q~~f~~------~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~~~~~ 96 (201)
||||||||||+|.. ..+.++++++++++++|+.|+||||+++.+..+.. .......|+.+ |..|++++++++
T Consensus 1 TaLlvID~Q~~f~~~~~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~l~~ 79 (174)
T PF00857_consen 1 TALLVIDMQNDFINGSLAPPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPH-CIPGSPGAELVP 79 (174)
T ss_dssp EEEEEES-BHHHHTSTTTSTTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSC-SBTTSGGGSBHG
T ss_pred CEEEEEeChhhhhcCCccccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeeccccccccccccccccc-ccCCCCccceee
Confidence 79999999999992 24678999999999999999999999999883322 22233344555 999999999999
Q ss_pred cccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHH
Q 028963 97 EIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEA 176 (201)
Q Consensus 97 ~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~ 176 (201)
++.+ .+++.+|.|+++|+|.+|+|.++|+++|+++|+|+|+.|++||++|+++|+++||+|+|++|||++.+++.|+.
T Consensus 80 ~l~~--~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~ 157 (174)
T PF00857_consen 80 ELAP--QPGDPVIEKNRYSAFFGTDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEA 157 (174)
T ss_dssp GGHC--HTTSEEEEESSSSTTTTSSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHH
T ss_pred Eeec--ccccceEEeecccccccccccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHH
Confidence 9999 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEeeHHH
Q 028963 177 TLKNLAYGFAYLFDCER 193 (201)
Q Consensus 177 al~~l~~~~~~v~~~~e 193 (201)
+++.|+..|++|++++|
T Consensus 158 ~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 158 ALEELRKRGAEVITSAE 174 (174)
T ss_dssp HHHHHHHHTSEEE-HHH
T ss_pred HHHHHHhCCCEEEeCCC
Confidence 99999999999999986
No 7
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=8.3e-42 Score=263.19 Aligned_cols=170 Identities=26% Similarity=0.337 Sum_probs=150.2
Q ss_pred EEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCC-CccccccccCC-CccccCCCCcccc
Q 028963 25 VLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPA-DYGMLGEWWNG-DLVYDGTADAELL 95 (201)
Q Consensus 25 aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~g~~~~ 95 (201)
|||||||||+|+.+ ...++++++++++.||+.|+||||+++.+.+.. ..+.+...+|. ..+..|++|++++
T Consensus 1 ALlvID~Q~~f~~~~~~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~ 80 (179)
T cd01015 1 ALLVIDLVEGYTQPGSYLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPAMSDLVEGSPLAAIC 80 (179)
T ss_pred CEEEEEeecceeCCCCccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccccccccCCCCccccc
Confidence 69999999999853 356899999999999999999999998875331 11111112222 2367899999999
Q ss_pred ccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHH
Q 028963 96 PEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHE 175 (201)
Q Consensus 96 ~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~ 175 (201)
++|.+ .+++.++.|++||+|++|+|+.+|+++||++|+|+|+.|++||++|+++|+++||+|+|++|||++.+++.|+
T Consensus 81 ~~l~~--~~~~~v~~K~~~saF~~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~~~~~~h~ 158 (179)
T cd01015 81 DELAP--QEDEMVLVKKYASAFFGTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGDRAPAPHE 158 (179)
T ss_pred cccCC--CCCCEEEecCccCCccCCcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccCCCHHHHH
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEeeHHHHHH
Q 028963 176 ATLKNLAYGFAYLFDCERLEA 196 (201)
Q Consensus 176 ~al~~l~~~~~~v~~~~e~~~ 196 (201)
.++..|...++.|++++|+++
T Consensus 159 ~al~~l~~~~~~v~~t~~~~~ 179 (179)
T cd01015 159 ANLFDIDNKYGDVVSTDDALA 179 (179)
T ss_pred HHHHHHHhhceeeccHHHHhC
Confidence 999999999999999999863
No 8
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=100.00 E-value=6.2e-40 Score=247.74 Aligned_cols=154 Identities=25% Similarity=0.412 Sum_probs=140.7
Q ss_pred EEEEEeccCccCCC---chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCC
Q 028963 25 VLLVIDMQNHFSSI---AKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGL 101 (201)
Q Consensus 25 aLlviD~Q~~f~~~---~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~ 101 (201)
|||||||||+|... ...+++++++++++||+.|+||||+++... +..+++|+|.+.
T Consensus 1 aLlvID~Q~~f~~~~~~~~~~~~~i~~l~~~ar~~g~pVi~~~~~~~---------------------~~g~~~~~l~~~ 59 (157)
T cd01012 1 ALLLVDVQEKLAPAIKSFDELINNTVKLAKAAKLLDVPVILTEQYPK---------------------GLGPTVPELREV 59 (157)
T ss_pred CEEEEeCcHHHHHhhcCHHHHHHHHHHHHHHHHhcCCCEEEEeeCCC---------------------CCCCchHHHHhh
Confidence 69999999999853 467899999999999999999999976421 112688999873
Q ss_pred CCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 028963 102 VAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNL 181 (201)
Q Consensus 102 ~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l 181 (201)
.+++.+|.|++||+|.+|+|.++|+++|+++|+|+|+.|++||++|+++|+++||+|++++|||++.+++.|+.+|..|
T Consensus 60 -~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~ 138 (157)
T cd01012 60 -FPDAPVIEKTSFSCWEDEAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARM 138 (157)
T ss_pred -CCCCCceecccccCcCCHHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceEEeeHHHHHHhhcC
Q 028963 182 AYGFAYLFDCERLEAGLFG 200 (201)
Q Consensus 182 ~~~~~~v~~~~e~~~~l~~ 200 (201)
+..++.|+++++++.+|.+
T Consensus 139 ~~~~~~v~~~~~~~~~l~~ 157 (157)
T cd01012 139 RQAGAVLTTSESVLFELQR 157 (157)
T ss_pred HHCCCEEeeHHHHHHHHcC
Confidence 9999999999999999864
No 9
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=1.3e-39 Score=254.26 Aligned_cols=161 Identities=30% Similarity=0.389 Sum_probs=143.5
Q ss_pred eEEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCC-cc--------------ccccccC
Q 028963 24 SVLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPAD-YG--------------MLGEWWN 81 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~-~~--------------~~~~~~~ 81 (201)
+|||||||||+|+.+ .+.++++|++++++|| |.||||+++.|.+... +. .....||
T Consensus 2 tALlvID~Qndf~~~g~l~~~~~~~~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (196)
T cd01011 2 DALLVVDVQNDFCPGGALAVPGGDAIVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPPGPQVLWP 79 (196)
T ss_pred ceEEEEcCCCCCCCCCcccCCCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCCCCcCcCC
Confidence 699999999999862 3568999999999999 9999999998864321 11 1133688
Q ss_pred CCccccCCCCccccccccCCCCCCCEEEECC------CCCCCCC------CchHHHHHhCCCcEEEEeeccCchhHHHHH
Q 028963 82 GDLVYDGTADAELLPEIKGLVAGADEVIEKN------TYSAFGN------TRLQERLVGMGVEEVIVCGVMTNLCCETTA 149 (201)
Q Consensus 82 ~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~------~~saf~~------t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta 149 (201)
.| |.+|++|++++|+|.+ .+++.++.|+ +||+|++ |+|.++|+++||++|+|+|+.|++||++|+
T Consensus 80 ~~-~~~gs~g~~i~~~l~~--~~~d~vi~K~~~~~~~~~saF~~~~~~~~t~L~~~L~~~~i~~lii~G~~t~~CV~~T~ 156 (196)
T cd01011 80 DH-CVQGTPGAELHPGLPV--PDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRERGIDRVDVVGLATDYCVKATA 156 (196)
T ss_pred Cc-cCCCCCCCccCccccc--CCCCEEEECCCCCCCceeeeeecCCccCchhHHHHHHHCCCCEEEEEEecccHHHHHHH
Confidence 77 9999999999999999 8899999994 6899998 999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEe
Q 028963 150 RDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLF 189 (201)
Q Consensus 150 ~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~ 189 (201)
++|+++||+|+|++|||++.+++.|+.+|+.|+..|+.++
T Consensus 157 ~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 157 LDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 9999999999999999999999999999999999888764
No 10
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=4.4e-39 Score=253.98 Aligned_cols=174 Identities=27% Similarity=0.359 Sum_probs=152.3
Q ss_pred CCCCCCeEEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCC-Cc------------cccc
Q 028963 18 NPNPKSSVLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPA-DY------------GMLG 77 (201)
Q Consensus 18 ~~~~~~~aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~-~~------------~~~~ 77 (201)
.+++.++|||||||||+|+.+ ...++++++++++++ .+.+|+|++++|+... .+ +...
T Consensus 7 ~~~~~~~ALlVIDmQndF~~~g~l~~~~~~~iv~~i~~l~~~~--~~~~Vi~~~d~h~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T PTZ00331 7 TVSSTNDALIIVDVQNDFCKGGSLAVPDAEEVIPVINQVRQSH--HFDLVVATQDWHPPNHISFASNHGKPKILPDGTTQ 84 (212)
T ss_pred ccCCCCCEEEEEcCCCCCCCCCccCCCCHHHHHHHHHHHHHhc--CCCEEEEecCcCCCCCcChhhcCCCCCcccCCCcc
Confidence 456788999999999999853 356899999999853 3557999988875421 11 1112
Q ss_pred cccCCCccccCCCCccccccccCCCCCCCEEEECC------CCCCC-----CCCchHHHHHhCCCcEEEEeeccCchhHH
Q 028963 78 EWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKN------TYSAF-----GNTRLQERLVGMGVEEVIVCGVMTNLCCE 146 (201)
Q Consensus 78 ~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~------~~saf-----~~t~L~~~L~~~gi~~lvi~G~~T~~CV~ 146 (201)
..||.| |..|++|++++|+|.+ .+++.++.|+ +||+| .+|+|.++|+++|+++|+|+|++|++||+
T Consensus 85 ~~~~~h-~~~gs~g~~i~~~L~~--~~~~~vi~K~~~~~~~~~saF~~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV~ 161 (212)
T PTZ00331 85 GLWPPH-CVQGTKGAQLHKDLVV--ERIDIIIRKGTNRDVDSYSAFDNDKGSKTGLAQILKAHGVRRVFICGLAFDFCVL 161 (212)
T ss_pred CCCccc-ccCCCCcccCChhhcc--CCCcEEEECCCCCCCceecCccCCCCCCchHHHHHHHCCCCEEEEEEeccCHHHH
Confidence 378877 9999999999999999 8899999998 69999 99999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHH
Q 028963 147 TTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEA 196 (201)
Q Consensus 147 ~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~ 196 (201)
+|+++|.++||+|+|++|||++.+++.|+.+|+.|+..|+.|+++++++.
T Consensus 162 ~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~~~~~~~ 211 (212)
T PTZ00331 162 FTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLTSSDLVA 211 (212)
T ss_pred HHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEeHHHhhh
Confidence 99999999999999999999999999999999999999999999999874
No 11
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-38 Score=249.55 Aligned_cols=177 Identities=36% Similarity=0.483 Sum_probs=153.1
Q ss_pred CCCCCeEEEEEeccCccCCCc----------hhHHHHHHHHHHHHHHCCCcEEEEecccCCCCC-------ccccccccC
Q 028963 19 PNPKSSVLLVIDMQNHFSSIA----------KPILDNTLATVQLCRRASIPVFFTRHCHKSPAD-------YGMLGEWWN 81 (201)
Q Consensus 19 ~~~~~~aLlviD~Q~~f~~~~----------~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~-------~~~~~~~~~ 81 (201)
++++++|||+|||||+|+++. ..+++++++++++||+.|.||||+++.|.++.. ...... ||
T Consensus 1 ~~~~~~ALivID~Q~~f~~~~~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (205)
T COG1335 1 LDPAKTALIVVDMQNDFMPGGGSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFP-WP 79 (205)
T ss_pred CCccceEEEEEeeeccccCCCCcccccCCchhhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCC-Cc
Confidence 367899999999999999752 149999999999999999999999999986421 111112 88
Q ss_pred CCccccCCCCccccccccCCCCCC------CEEEECC-CCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHh
Q 028963 82 GDLVYDGTADAELLPEIKGLVAGA------DEVIEKN-TYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFV 154 (201)
Q Consensus 82 ~~~~~~g~~g~~~~~~l~~~~~~~------~~vv~K~-~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~ 154 (201)
.| |.+|++|++++++|.+ ... +.++.|. +||+|++|+|..+|+++||++|+++|+.|++||++|+++|.+
T Consensus 80 ~h-~~~g~~g~~~~~~l~~--~~~~~~~~~~~~~~k~~~~saF~~T~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~ 156 (205)
T COG1335 80 RH-DVKGTPGAELLGELPP--AVDDAQLVPEDVIFKKHGYSAFAGTDLDDILRNLGIDTVVVCGIATDICVLATARDAFD 156 (205)
T ss_pred ch-hcCCCcchhhcccccc--ccccccccceeeeccccccCcccCCCHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHH
Confidence 88 9999999999999998 555 7888888 999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCCC-HHHHHHHHHHHhh-cceEEeeHHHHHHhhc
Q 028963 155 RGFRVFFSTDATATSD-LELHEATLKNLAY-GFAYLFDCERLEAGLF 199 (201)
Q Consensus 155 ~G~~v~vv~Da~~~~~-~~~h~~al~~l~~-~~~~v~~~~e~~~~l~ 199 (201)
+||+|++++|||++.+ +..|..++..+.. ..+.++++++++..+.
T Consensus 157 ~gy~v~v~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (205)
T COG1335 157 LGYQVTLVEDATAGSSLDRSGEAAARLEKHHIFGAVLDTEEALALWA 203 (205)
T ss_pred CCCeEEEehhhcccCCCChHHHHHHHHHHhhhhcceeehHHHHhhhc
Confidence 9999999999999998 6667777777777 3788888888776654
No 12
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=3.3e-38 Score=238.82 Aligned_cols=154 Identities=43% Similarity=0.593 Sum_probs=138.7
Q ss_pred EEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCcccccc
Q 028963 25 VLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPE 97 (201)
Q Consensus 25 aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 97 (201)
|||+||||++|..+ ...+++++++++++||+.|.||||+++.+.+....... ..|+.+ |..|+++++++++
T Consensus 1 aLliID~Q~~f~~~~~~~~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~-~~~~~~-~~~~s~~~~~~~~ 78 (161)
T cd00431 1 ALLVVDMQNDFVPGGGLLLPGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAE-LLWPPH-CVKGTEGAELVPE 78 (161)
T ss_pred CEEEEECcccCcCCCCCcCccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCccccc-ccCccc-ccCCCchhhcchh
Confidence 69999999999864 25789999999999999999999999988754221111 146666 9999999999999
Q ss_pred ccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHH
Q 028963 98 IKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEAT 177 (201)
Q Consensus 98 l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~a 177 (201)
|.+ .+++.+|.|+++|+|.+|+|.++|+++|+++|+|+|++|++||++|+++|+++||+|+|++|||++.+++.|+.+
T Consensus 79 l~~--~~~~~~i~K~~~saf~~t~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~Da~~s~~~~~~~~a 156 (161)
T cd00431 79 LAP--LPDDLVIEKTRYSAFYGTDLDELLRERGIDTLVVCGIATDICVLATARDALDLGYRVIVVEDACATRDEEDHEAA 156 (161)
T ss_pred hCC--CCCCEEEecCCcCCccCCCHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEEehhhcccCChHHHHHH
Confidence 988 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 028963 178 LKNLA 182 (201)
Q Consensus 178 l~~l~ 182 (201)
+++|.
T Consensus 157 l~~~~ 161 (161)
T cd00431 157 LERLA 161 (161)
T ss_pred HHHcC
Confidence 98763
No 13
>PLN02743 nicotinamidase
Probab=100.00 E-value=2.6e-37 Score=246.86 Aligned_cols=167 Identities=18% Similarity=0.231 Sum_probs=144.0
Q ss_pred CCCCCCeEEEEEeccCccCCC-------------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCc
Q 028963 18 NPNPKSSVLLVIDMQNHFSSI-------------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDL 84 (201)
Q Consensus 18 ~~~~~~~aLlviD~Q~~f~~~-------------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
.+.++++|||||||||+|+.+ ...+++++++|+++||++|+||||+++.|.++.. ...|+.|
T Consensus 22 ~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~----~~~~~~h- 96 (239)
T PLN02743 22 LNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAFLDSHHPDKP----EHPYPPH- 96 (239)
T ss_pred ccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCccCCCcc----ccCCCCc-
Confidence 456788999999999999842 1347889999999999999999999988864321 1237776
Q ss_pred cccCCCCccccccccCCCCCCCE---EEECCCCCCCCCC------c-hHHHHHhCCCcEEEEeeccCchhHH---HHHHH
Q 028963 85 VYDGTADAELLPEIKGLVAGADE---VIEKNTYSAFGNT------R-LQERLVGMGVEEVIVCGVMTNLCCE---TTARD 151 (201)
Q Consensus 85 ~~~g~~g~~~~~~l~~~~~~~~~---vv~K~~~saf~~t------~-L~~~L~~~gi~~lvi~G~~T~~CV~---~Ta~~ 151 (201)
|..|++|++++++|.| .+++. ++.|++||+|++| + |.++|+++||++|+|+|++|++||+ +|+++
T Consensus 97 ~v~Gt~g~ei~~~L~p--~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTard 174 (239)
T PLN02743 97 CIVGTGEENLVPALQW--LENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALS 174 (239)
T ss_pred cCCCCcccccchhhCC--CCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHHH
Confidence 9999999999999998 66665 4679999999986 3 7999999999999999999999998 99999
Q ss_pred HHhCCC-----eEEEecCCCCCCCHH-----------------HHHHHHHHHhhcceEEeeH
Q 028963 152 AFVRGF-----RVFFSTDATATSDLE-----------------LHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 152 a~~~G~-----~v~vv~Da~~~~~~~-----------------~h~~al~~l~~~~~~v~~~ 191 (201)
|+++|| +|+|++|||++++.+ .|+.++..|..+|++|++.
T Consensus 175 A~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 236 (239)
T PLN02743 175 ARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSK 236 (239)
T ss_pred HHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeee
Confidence 999999 999999999998744 4677899999999999875
No 14
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=100.00 E-value=3.8e-37 Score=232.06 Aligned_cols=140 Identities=37% Similarity=0.553 Sum_probs=127.4
Q ss_pred EEEEEeccCccCCC------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccc
Q 028963 25 VLLVIDMQNHFSSI------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEI 98 (201)
Q Consensus 25 aLlviD~Q~~f~~~------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l 98 (201)
|||+|||||+|+.+ ...++++++++++++|++|+||||+++.+.++.. +..|++|++++|+|
T Consensus 1 aLlviD~Q~~f~~~~~~~~~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~~------------~~~gt~g~~l~~~l 68 (155)
T cd01014 1 ALLVIDVQNGYFDGGLPPLNNEAALENIAALIAAARAAGIPVIHVRHIDDEGGS------------FAPGSEGWEIHPEL 68 (155)
T ss_pred CEEEEeCchhhhCCCCCcCCHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCCCC------------CCCCCCccccchhh
Confidence 69999999999964 4578999999999999999999999987654321 46799999999999
Q ss_pred cCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHH
Q 028963 99 KGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATL 178 (201)
Q Consensus 99 ~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al 178 (201)
.+ .+++.+|.|+++|+|.+|+|.++|+++|+++|+|+|++|++||++||++|+++||+|+|++|||++.+...|+..+
T Consensus 69 ~~--~~~d~v~~K~~~saf~~t~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~s~~~~~~~~~~ 146 (155)
T cd01014 69 AP--LEGETVIEKTVPNAFYGTDLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACATFDLPDHGGVL 146 (155)
T ss_pred cC--CCCCEEEeCCCCCCcCCCCHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEecccccCCCcccCCcee
Confidence 98 7889999999999999999999999999999999999999999999999999999999999999999887776544
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.1e-37 Score=226.64 Aligned_cols=181 Identities=32% Similarity=0.472 Sum_probs=165.3
Q ss_pred cCCCCCCeEEEEEeccCccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEeccc-CCCCCccccccccCCCccccC
Q 028963 17 RNPNPKSSVLLVIDMQNHFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCH-KSPADYGMLGEWWNGDLVYDG 88 (201)
Q Consensus 17 ~~~~~~~~aLlviD~Q~~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~g 88 (201)
-.++|++.+|||.||||.|++. -+.++.||.+|-.+|.++|+||++|.+-+ .+|.+...+..||+++ +..+
T Consensus 24 w~~~p~RavLLIhDMQ~YFv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~draLL~d~WGpg-l~~~ 102 (218)
T COG1535 24 WRFEPKRAVLLIHDMQNYFVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQPGEQSPEDRALLKDFWGPG-LTAS 102 (218)
T ss_pred cccCcccceeeeehhHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHhcCCC-CCCC
Confidence 3578899999999999999864 35689999999999999999999998876 3444556678899888 6667
Q ss_pred CCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 89 ~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.+...++.+|.| ..+|.++.|.+||+|+.++|.+.||+.|++++||+|+.+++|++.||.+||-+++++++|.|+.++
T Consensus 103 p~~~~vv~~l~P--~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGVyaHigcl~TA~dAFm~diqpfmV~DAlaD 180 (218)
T COG1535 103 PEQQKVVDELAP--GADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGVYAHIGCLTTATDAFMRDIQPFMVADALAD 180 (218)
T ss_pred hhhhhhHHhcCC--CCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeehhhhhhhhhhHHHHHHhcCcceeehhhhhh
Confidence 778889999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcceEEeeHHHHHHhhcC
Q 028963 169 SDLELHEATLKNLAYGFAYLFDCERLEAGLFG 200 (201)
Q Consensus 169 ~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~~ 200 (201)
++.+.|..+|+.+..+-+.|+++++++.++..
T Consensus 181 fs~~~H~msLky~A~r~a~vv~Teell~~~~~ 212 (218)
T COG1535 181 FSEEEHRMSLKYVAGRCARVVMTEELLCALAS 212 (218)
T ss_pred ccHHHHHHHHHHHhcceeEEeeHHHHhhcccc
Confidence 99999999999999999999999999988753
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.95 E-value=1.4e-28 Score=182.72 Aligned_cols=167 Identities=23% Similarity=0.261 Sum_probs=135.1
Q ss_pred eEEEEEeccCccCCC---------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCC--------C--------------
Q 028963 24 SVLLVIDMQNHFSSI---------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPA--------D-------------- 72 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~---------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~--------~-------------- 72 (201)
.+||||||||||+++ ....+..++.++..+.-.--.||+|.++|+... +
T Consensus 2 ~~l~vvd~qndfi~~~~~~~s~~E~~~~i~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t~~~~~~ 81 (223)
T KOG4003|consen 2 KTLIVVDMQNDFISPLGSLTSVPEGEELINPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYTYHSPRP 81 (223)
T ss_pred ceEEEEeccccccccccccccCCCchhhhccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCcccCCCc
Confidence 589999999999975 223455555555554444456999999987521 0
Q ss_pred cc---ccccccCCCccccCCCCccccccccCCCCCCCEEEECC------CCCCCC------CCchHHHHHhCCCcEEEEe
Q 028963 73 YG---MLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKN------TYSAFG------NTRLQERLVGMGVEEVIVC 137 (201)
Q Consensus 73 ~~---~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~------~~saf~------~t~L~~~L~~~gi~~lvi~ 137 (201)
++ ...-|||.| |++.+||.++++++-. .....+|.|. .||+|+ .|+|..+|++.||+.|+|+
T Consensus 82 ~d~V~~~~vl~p~H-Cv~ntwG~d~~~~~~~--~~~~~~I~KG~D~~~eSYSaF~D~~GR~kt~L~~~L~k~~Id~V~IA 158 (223)
T KOG4003|consen 82 GDDVTQEGILWPVH-CVKNTWGVDQIMDQVV--TKHIKIIDKGFDTDRESYSAFHDIWGRHKTDLNKYLEKHHIDEVYIA 158 (223)
T ss_pred CCchheeeecchhh-hhccCCCCCcchhhhh--hhheeecccCcchhHHHHHHHhhhcccchhhHHHHHHHcCCCeEEEe
Confidence 00 123478888 9999999999999988 7888899987 699996 5899999999999999999
Q ss_pred eccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHH
Q 028963 138 GVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCER 193 (201)
Q Consensus 138 G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e 193 (201)
|+++|+||..||++|.+.||..+|+..|+.+.+.+.|+.+.+.++..+.++++-.+
T Consensus 159 GvA~DICVk~TaL~A~~~~y~t~vI~E~~~Gsst~si~~~~~~F~k~k~e~IS~~~ 214 (223)
T KOG4003|consen 159 GVALDICVKATALSAAELGYKTTVILEYTRGSSTPSISDDPEVFNKVKEELISHNI 214 (223)
T ss_pred ehhhHHHHHHHHhhHHHhCcceeeehhhhccCCCcccccCHHHHHHhhHHHhhccc
Confidence 99999999999999999999999999999999888888887777777666666544
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.93 E-value=3.2e-25 Score=162.90 Aligned_cols=159 Identities=25% Similarity=0.379 Sum_probs=136.2
Q ss_pred CCCCCCeEEEEEeccCccCCC---chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccc
Q 028963 18 NPNPKSSVLLVIDMQNHFSSI---AKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAEL 94 (201)
Q Consensus 18 ~~~~~~~aLlviD~Q~~f~~~---~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~ 94 (201)
.+.|.+++++++|||+.|-+. ...++.+..+|++++|..++|+|.|.+++.. .+ ..
T Consensus 10 rl~P~~t~fflCDmQEKFrpai~yf~~iIs~~~rLl~aaril~vP~ivTEqYP~g---LG------------------~T 68 (201)
T KOG4044|consen 10 RLNPSSTVFFLCDMQEKFRPAIPYFPSIISVTTRLLAAARILQVPVIVTEQYPEG---LG------------------KT 68 (201)
T ss_pred ecCCCceEEEEechHhhhcccchhhHHHHHHHHHHHHhhhhhCCcEEeecccccc---cc------------------cc
Confidence 378999999999999999875 5679999999999999999999999988552 11 24
Q ss_pred cccccCCCCCCCEEEECCCCCCCCCCchHHHHHh-CCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHH
Q 028963 95 LPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVG-MGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLEL 173 (201)
Q Consensus 95 ~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~-~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~ 173 (201)
+++|.. ..-..++.|+.||.+-. +...-+.+ .|.++++++|+.|+.||++|++++.++|.+|++|.|||+|++...
T Consensus 69 V~eLd~--~g~~~~~~KT~FSM~~p-~v~~s~~~i~~~k~VvL~GiEthvCv~qTa~dLl~rgl~VhvVaDacSSRs~~D 145 (201)
T KOG4044|consen 69 VPELDI--EGLKLNLSKTKFSMVLP-PVEDSLKDIFGGKTVVLFGIETHVCVLQTALDLLERGLNVHVVADACSSRSNQD 145 (201)
T ss_pred chhhch--hhhcccccccceeeeCc-hHHHHHHhccCCCeEEEEecchheehHHHHHHHHhCCceEEEEeehhccccchh
Confidence 666755 44455699999999964 44455554 688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEEeeHHHHHHhhcC
Q 028963 174 HEATLKNLAYGFAYLFDCERLEAGLFG 200 (201)
Q Consensus 174 h~~al~~l~~~~~~v~~~~e~~~~l~~ 200 (201)
...|+++|++.|+.+.|++.++-.|-+
T Consensus 146 R~~Al~r~rq~G~~lstsEsvI~~Lvg 172 (201)
T KOG4044|consen 146 RDLALERMRQAGANLSTSESVILNLVG 172 (201)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHhc
Confidence 999999999999999999999877643
No 18
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=84.44 E-value=2 Score=32.57 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=38.7
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
..+.++|.+.|+..+..-|.+.|-++.+-+..+.+.|++|++++
T Consensus 89 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 132 (169)
T PF02739_consen 89 PYIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFEVIIVS 132 (169)
T ss_dssp HHHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCEEEEE-
T ss_pred HHHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCEEEEEc
Confidence 35678888999999999999999999999999999999999885
No 19
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=77.12 E-value=18 Score=27.22 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=62.4
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGL 101 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~ 101 (201)
.+..-|.||.||-+.. .+--++..+++.+...|..++--.-. . ||... .+.+.|..
T Consensus 22 ~~riAvfID~~Nv~~~---~~~~d~~~i~~~ls~~G~i~~~R~Y~-~----------a~a~~---------~l~~~l~~- 77 (160)
T TIGR00288 22 EKKIGLLVDGPNMLRK---EFNIDLDEIREILSEYGDIKIGKVLL-N----------QYASD---------KLIEAVVN- 77 (160)
T ss_pred CCcEEEEEeCCccChh---hhccCHHHHHHHHHhcCCeEEEEEEe-c----------hhccH---------HHHHHHHH-
Confidence 4457788999998632 11123566777777777533321111 0 01000 12233333
Q ss_pred CCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 102 VAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 102 ~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
..-++++.|...+.=---+.-+.+.+..++.++|+--.+|++-+... +.++|-+|+++.
T Consensus 78 -~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~--lre~G~~V~v~g 136 (160)
T TIGR00288 78 -QGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINK--AKENGKETIVIG 136 (160)
T ss_pred -CCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHH--HHHCCCEEEEEe
Confidence 34444455542111101123344545678999999888888887544 456699999987
No 20
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=77.00 E-value=12 Score=31.46 Aligned_cols=67 Identities=9% Similarity=-0.037 Sum_probs=44.8
Q ss_pred HHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCC--CHHHHHHHHHHHhhcceEEeeH
Q 028963 125 RLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATS--DLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 125 ~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~--~~~~h~~al~~l~~~~~~v~~~ 191 (201)
..+++|+++|+-+|-.+..=..++|..+..+|++++++.+.-.+. .+.....-+..++..|++|+-.
T Consensus 61 ~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v 129 (337)
T PRK12390 61 DALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLV 129 (337)
T ss_pred HHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEe
Confidence 344789999998887777777888999999999999986543221 1222222344556677776554
No 21
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=74.01 E-value=12 Score=28.44 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=72.0
Q ss_pred EEEEeccCccCCC-chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCC
Q 028963 26 LLVIDMQNHFSSI-AKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAG 104 (201)
Q Consensus 26 LlviD~Q~~f~~~-~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~ 104 (201)
=|++|+-|-.++- .....+.+.+.++..++.|+.++.+....+.. ..+ +.+.|.
T Consensus 30 gvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-----V~~---------------~~~~l~----- 84 (175)
T COG2179 30 GVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESR-----VAR---------------AAEKLG----- 84 (175)
T ss_pred EEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-----HHh---------------hhhhcC-----
Confidence 4778999988764 34567888899999999999887776432210 000 011111
Q ss_pred CCEEEECCCCCCCCCCchHHHHHhCCC--cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCC
Q 028963 105 ADEVIEKNTYSAFGNTRLQERLVGMGV--EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSD 170 (201)
Q Consensus 105 ~~~vv~K~~~saf~~t~L~~~L~~~gi--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~ 170 (201)
-+++..-..+ | .-.+...|++.++ ++++++|-. ..+=++++..+|++++.|+-...+-.
T Consensus 85 v~fi~~A~KP--~-~~~fr~Al~~m~l~~~~vvmVGDq----L~TDVlggnr~G~~tIlV~Pl~~~d~ 145 (175)
T COG2179 85 VPFIYRAKKP--F-GRAFRRALKEMNLPPEEVVMVGDQ----LFTDVLGGNRAGMRTILVEPLVAPDG 145 (175)
T ss_pred CceeecccCc--c-HHHHHHHHHHcCCChhHEEEEcch----hhhhhhcccccCcEEEEEEEeccccc
Confidence 1111111111 2 3477888888765 689999964 22337889999999999987776643
No 22
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=71.65 E-value=20 Score=31.13 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec----
Q 028963 88 GTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST---- 163 (201)
Q Consensus 88 g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~---- 163 (201)
||-|-||...++. +++.+++.-.+-+.. ......|++.+. ++=|.|+.|+.|-..+ .+..+|-.|+...
T Consensus 202 gTig~EIl~ql~~--~~~AI~vpVGGGGLi--aGIat~vk~~~p-~vkIIGVEt~~a~~f~--~sl~~g~~V~lp~i~s~ 274 (457)
T KOG1250|consen 202 GTIGLEILEQLKE--PDGAIVVPVGGGGLI--AGIATGVKRVGP-HVKIIGVETEGAHSFN--ASLKAGKPVTLPKITSL 274 (457)
T ss_pred chHHHHHHHhhcC--CCCeEEEecCCchhH--HHHHHHHHHhCC-CCceEEEeecCcHHHH--HHHhcCCeeecccccch
Confidence 8888899988887 666666665554433 367788888887 8899999999996544 4678888776543
Q ss_pred -CCCCCCCHHHHHHHHHHHhhc--ceEEeeHHHHHHhh
Q 028963 164 -DATATSDLELHEATLKNLAYG--FAYLFDCERLEAGL 198 (201)
Q Consensus 164 -Da~~~~~~~~h~~al~~l~~~--~~~v~~~~e~~~~l 198 (201)
|..+. +..-+.+++.++.. ...+++.+|+..+.
T Consensus 275 AdglaV--~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI 310 (457)
T KOG1250|consen 275 ADGLAV--KTVGENTFELAQKLVDRVVVVEDDEIAAAI 310 (457)
T ss_pred hccccc--chhhHHHHHHHHhcCceEEEeccHHHHHHH
Confidence 33333 34455566665533 45677777776654
No 23
>PRK10444 UMP phosphatase; Provisional
Probab=70.43 E-value=37 Score=27.30 Aligned_cols=42 Identities=5% Similarity=0.077 Sum_probs=32.7
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
++++|+.--+.... ..++...+.++..++.|.|++++.....
T Consensus 3 ~v~~DlDGtL~~~~-~~~p~a~~~l~~L~~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 3 NVICDIDGVLMHDN-VAVPGAAEFLHRILDKGLPLVLLTNYPS 44 (248)
T ss_pred EEEEeCCCceEeCC-eeCccHHHHHHHHHHCCCeEEEEeCCCC
Confidence 67888888777644 5677778888889999999999875543
No 24
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=68.09 E-value=24 Score=29.72 Aligned_cols=66 Identities=9% Similarity=-0.092 Sum_probs=43.5
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCH--HHHHHHHHHHhhcceEEeeH
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDL--ELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~--~~h~~al~~l~~~~~~v~~~ 191 (201)
.+++|+++|+-+|-++..=..++|..+..+|++++++.+-..+... .....-+..|+..|++|+..
T Consensus 61 a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v 128 (337)
T TIGR01274 61 AQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD 128 (337)
T ss_pred HHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence 4468998888877666666677888899999998888765433211 11233444566677776544
No 25
>TIGR03586 PseI pseudaminic acid synthase.
Probab=64.79 E-value=36 Score=28.78 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCch
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRL 122 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L 122 (201)
.+-..+|.+.+++.|++++-+...... .++..++.. -+.|-.-.-..+.+|
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stpfd~~s----------------------vd~l~~~~v-------~~~KI~S~~~~n~~L 126 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSPFDETA----------------------VDFLESLDV-------PAYKIASFEITDLPL 126 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEccCCHHH----------------------HHHHHHcCC-------CEEEECCccccCHHH
Confidence 345567888999999998888654321 012222211 122222222346677
Q ss_pred HHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCC-eEEEecCCCCCCC---HHHHHHHHHHHhhcc
Q 028963 123 QERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGF-RVFFSTDATATSD---LELHEATLKNLAYGF 185 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~-~v~vv~Da~~~~~---~~~h~~al~~l~~~~ 185 (201)
.+.+.+.|..-++=.|++|-.=|...+.-..+.|- ++++.. |++++. .+..-.++..|+..+
T Consensus 127 L~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Llh-C~s~YP~~~~~~nL~~i~~lk~~f 192 (327)
T TIGR03586 127 IRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLK-CTSSYPAPLEDANLRTIPDLAERF 192 (327)
T ss_pred HHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEe-cCCCCCCCcccCCHHHHHHHHHHh
Confidence 77777788887887888776666666666666776 455555 776653 233344455555443
No 26
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=64.21 E-value=35 Score=21.79 Aligned_cols=58 Identities=14% Similarity=-0.124 Sum_probs=41.8
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEecCC--CC-CCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA--TA-TSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da--~~-~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
+++|.|--.-.|-.+..+ .++|.+|+++.-. .. ..+++..+...+.++..+.++....
T Consensus 1 ~vvViGgG~ig~E~A~~l--~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL--AELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp EEEEESSSHHHHHHHHHH--HHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred CEEEECcCHHHHHHHHHH--HHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 467777777777666666 4567777776543 33 4578889999999999998887654
No 27
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=64.00 E-value=63 Score=27.18 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCC-
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNT- 120 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t- 120 (201)
+=..|..+++.+..+|..|+.+++.+..--. .. ... -.++.+..+.. .++ ..+--.++..|.+.
T Consensus 15 mNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~---------~~-~~~--l~~~~v~~~~~--~gG-t~LgtsR~~~~~~~~ 79 (317)
T cd00763 15 MNAAIRGVVRSAIAEGLEVYGIRDGYAGLIA---------GD-IVP--LDRYSVSDIIN--RGG-TFLGSARFPEFKDEE 79 (317)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHhcC---------CC-eEe--CCHHHhhhHHh--CCC-eeeccCCCCccCCHH
Confidence 3345567788888889999988876542100 00 000 00011122222 222 24444555556432
Q ss_pred ---chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 121 ---RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 121 ---~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
...+.|++++|+.|++.|-... ..+|....+.|+.|+.+.
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGGdgs---~~~a~~L~e~~i~vigiP 122 (317)
T cd00763 80 GQAKAIEQLKKHGIDALVVIGGDGS---YMGAMRLTEHGFPCVGLP 122 (317)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchH---HHHHHHHHHcCCCEEEec
Confidence 3456788999999999998654 556667777788887554
No 28
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=63.90 E-value=84 Score=26.04 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=57.0
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCcccc------ccc
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELL------PEI 98 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~------~~l 98 (201)
.=|++|...+|-+ ..++.+.++...+.|+--|++.+.-.+. . |-- ..|.+++ ..|
T Consensus 74 iPviaD~d~GyG~-----~~~v~~tv~~~~~aG~agi~IEDq~~pK-~------------cgh-~~g~~lv~~ee~~~kI 134 (285)
T TIGR02317 74 LPLLVDADTGFGE-----AFNVARTVREMEDAGAAAVHIEDQVLPK-R------------CGH-LPGKELVSREEMVDKI 134 (285)
T ss_pred CCEEEECCCCCCC-----HHHHHHHHHHHHHcCCeEEEEecCCCcc-c------------cCC-CCCccccCHHHHHHHH
Confidence 3488999999965 5566667777778899889998753211 1 100 0112222 111
Q ss_pred cCC---CCCCCEEEECCCCCCCCCCchHHHHH------hCCCcEEEEeeccCc
Q 028963 99 KGL---VAGADEVIEKNTYSAFGNTRLQERLV------GMGVEEVIVCGVMTN 142 (201)
Q Consensus 99 ~~~---~~~~~~vv~K~~~saf~~t~L~~~L~------~~gi~~lvi~G~~T~ 142 (201)
+.. ....+.+|. -+-++|....+++.++ +.|.+-|++-|..+.
T Consensus 135 ~Aa~~a~~~~d~~Ii-ARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~~ 186 (285)
T TIGR02317 135 AAAVDAKRDEDFVII-ARTDARAVEGLDAAIERAKAYVEAGADMIFPEALTSL 186 (285)
T ss_pred HHHHHhccCCCEEEE-EEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCCCH
Confidence 110 012244444 4556666667777665 368899999887643
No 29
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=63.61 E-value=15 Score=29.44 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=38.7
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
..+.+.|+..|+..+..-|.++|-.+.+-|..+...|++++|++
T Consensus 88 ~~~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S 131 (240)
T cd00008 88 PLIKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVS 131 (240)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46778888899999999999999998888888888999998887
No 30
>smart00475 53EXOc 5'-3' exonuclease.
Probab=63.51 E-value=16 Score=29.68 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=39.0
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+.+.+.|+..|+..+..-|++.|-.+.+-|..+...|+.+++++
T Consensus 87 ~~~~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~g~~~~IvS 130 (259)
T smart00475 87 PLIKELLDALGIPVLEVEGYEADDVIATLAKKAEAEGYEVRIVS 130 (259)
T ss_pred HHHHHHHHHCCCCEEeeCCcCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 56778889999999999999999988888888888899999887
No 31
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=62.11 E-value=57 Score=24.61 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=53.0
Q ss_pred CCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHH-hCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 028963 103 AGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAF-VRGFRVFFSTDATATSDLELHEATLKNL 181 (201)
Q Consensus 103 ~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~-~~G~~v~vv~Da~~~~~~~~h~~al~~l 181 (201)
..+..++.+-..++|....|.++|+..|.+-++.-| ++|....-=|.+.. ...++++++--.=+ .....+..+
T Consensus 52 ~~G~i~~~R~Y~~a~a~~~l~~~l~~~Gf~pv~~kG-~~Dv~laIDame~~~~~~iD~~vLvSgD~-----DF~~Lv~~l 125 (160)
T TIGR00288 52 EYGDIKIGKVLLNQYASDKLIEAVVNQGFEPIIVAG-DVDVRMAVEAMELIYNPNIDAVALVTRDA-----DFLPVINKA 125 (160)
T ss_pred hcCCeEEEEEEechhccHHHHHHHHHCCceEEEecC-cccHHHHHHHHHHhccCCCCEEEEEeccH-----hHHHHHHHH
Confidence 356777776666778778899999999999888888 78877654444443 33466666543222 244455566
Q ss_pred hhcceEEe
Q 028963 182 AYGFAYLF 189 (201)
Q Consensus 182 ~~~~~~v~ 189 (201)
++.|.+|+
T Consensus 126 re~G~~V~ 133 (160)
T TIGR00288 126 KENGKETI 133 (160)
T ss_pred HHCCCEEE
Confidence 66666543
No 32
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=61.70 E-value=4.9 Score=35.49 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=70.8
Q ss_pred hhhhccCCCCCCeEEEE-EeccCc-cCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCC
Q 028963 12 YEIRKRNPNPKSSVLLV-IDMQNH-FSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGT 89 (201)
Q Consensus 12 ~~~~~~~~~~~~~aLlv-iD~Q~~-f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (201)
|.......+++|+=|+. +|=-.= |-+....++++|.++++.-|..|+-|+|+.+.+.+-.+ -+-+.
T Consensus 243 fe~LPEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~------------~VL~Q 310 (502)
T PF05872_consen 243 FEQLPEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPD------------DVLGQ 310 (502)
T ss_pred HHhCccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCH------------HHHHh
Confidence 44455566677666644 665443 33346678999999999999999999999987653221 22334
Q ss_pred CCccccccccCCCCCCCEEEECCCCCCCCC---CchHHHHHhCCCcEEEEeecc
Q 028963 90 ADAELLPEIKGLVAGADEVIEKNTYSAFGN---TRLQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 90 ~g~~~~~~l~~~~~~~~~vv~K~~~saf~~---t~L~~~L~~~gi~~lvi~G~~ 140 (201)
-|..+-..|+.+ .|.|.--.|.....|.. -++.+.|.+.|+-+-+|+-+.
T Consensus 311 LGnrIQHaLRAf-TP~DqKavk~aa~tfr~np~~d~~~~it~Lg~GEAlVs~Ld 363 (502)
T PF05872_consen 311 LGNRIQHALRAF-TPKDQKAVKAAAETFRPNPAFDTEEVITELGTGEALVSVLD 363 (502)
T ss_pred hhhHHHHHHhcC-CHhHHHHHHHHHHhCCCCccccHHHHHhhcCcchhhheecC
Confidence 444555555554 44443333333333321 267778888887776665544
No 33
>PRK09482 flap endonuclease-like protein; Provisional
Probab=60.73 E-value=16 Score=29.76 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=39.7
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+.+.+.|.+.|+..+..-|+++|-.+.+-|..+.+.|++|++++
T Consensus 87 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~I~S 130 (256)
T PRK09482 87 PAIRAAFEELGIDSWHADGNEADDLIATLAVKVAQAGHQATIVS 130 (256)
T ss_pred HHHHHHHHhCCCCEeccCCcCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45678888999999999999999999998998999999999887
No 34
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=60.47 E-value=44 Score=25.14 Aligned_cols=52 Identities=21% Similarity=0.048 Sum_probs=33.0
Q ss_pred ccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 139 VMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 139 ~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
-.+|..+..-+......+.+|+||++ |......+ ...|+..++++++...+.
T Consensus 77 ~tAD~~Ie~~v~~~~~~~~~v~VVTS-----D~~iq~~~----~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 77 ETADDYIERLVRELKNRPRQVTVVTS-----DREIQRAA----RGRGAKRISSEEFLRELK 128 (166)
T ss_pred CCHHHHHHHHHHHhccCCCeEEEEeC-----CHHHHHHH----hhCCCEEEcHHHHHHHHH
Confidence 35555566666666666778888753 33333333 347888888888877653
No 35
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=60.23 E-value=18 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 19 PNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 19 ~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
+...+.|++|||...+. .....+.+..++..++|+|.+-.
T Consensus 91 ~~~~D~ailvVda~~g~-------~~~~~~~l~~~~~~~~p~ivvlN 130 (188)
T PF00009_consen 91 LRQADIAILVVDANDGI-------QPQTEEHLKILRELGIPIIVVLN 130 (188)
T ss_dssp HTTSSEEEEEEETTTBS-------THHHHHHHHHHHHTT-SEEEEEE
T ss_pred ecccccceeeeeccccc-------ccccccccccccccccceEEeee
Confidence 45668899999999873 45667788888999999777754
No 36
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=59.88 E-value=37 Score=25.49 Aligned_cols=64 Identities=20% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCCcEEEEeeccCchhH-HHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 129 MGVEEVIVCGVMTNLCC-ETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 129 ~gi~~lvi~G~~T~~CV-~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
.+.+-+++||---+... +..||.+..+||+|.|+.=.-.....+.++..++.++..+..++...
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 45677889998766554 47788899999999993332233445678888888888888887643
No 37
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=59.61 E-value=50 Score=24.79 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCCEEEECCCCCCCCCC----------chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCH
Q 028963 104 GADEVIEKNTYSAFGNT----------RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDL 171 (201)
Q Consensus 104 ~~~~vv~K~~~saf~~t----------~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~ 171 (201)
++-.++--.-+.||..| ++...++++|++.|+.+-+.--.--.+=+++- ..+=+|.++.|.-+.+++
T Consensus 36 ~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~-g~~~~I~fi~Dg~geFTk 112 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQ-GGEGNIKFIPDGNGEFTK 112 (165)
T ss_pred CCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhc-CCCccEEEecCCCchhhh
Confidence 45555555667777632 46677889999999999887544332222221 222289999999988764
No 38
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=57.82 E-value=27 Score=28.08 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCCCeEEEEEeccCc-cCCC-----chhHHHHHHHHHHHHHHCCCcEEEEeccc
Q 028963 20 NPKSSVLLVIDMQNH-FSSI-----AKPILDNTLATVQLCRRASIPVFFTRHCH 67 (201)
Q Consensus 20 ~~~~~aLlviD~Q~~-f~~~-----~~~~i~~i~~l~~~ar~~g~~vi~~~~~~ 67 (201)
.++++.|++||.|.. |-.. -...+....+-+..||..|.|||-.....
T Consensus 62 ~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~ 115 (234)
T PF06833_consen 62 GPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGK 115 (234)
T ss_pred CCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 567889999999954 3322 23457888888999999999999887654
No 39
>PHA02567 rnh RnaseH; Provisional
Probab=57.16 E-value=25 Score=29.42 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=37.0
Q ss_pred hHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 122 LQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+.+.+...|+..+.+-|+.+|-++.+-|..+...|++|++++
T Consensus 112 i~el~~~~gi~~l~~~g~EADDvIgTLA~k~~~~g~~VvIvS 153 (304)
T PHA02567 112 VDEIKENMPYKVMKIDKAEADDIIAVLTKKFSAEGRPVLIVS 153 (304)
T ss_pred HHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 455566679999999999999999999999999999999987
No 40
>PRK14976 5'-3' exonuclease; Provisional
Probab=56.79 E-value=23 Score=29.23 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=38.8
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+.+.++|+..|+..+..-|..+|-.+.+-+..+...|+.|++++
T Consensus 93 ~~i~~~l~~~gi~~~~~~g~EADDviatla~~~~~~g~~v~IvS 136 (281)
T PRK14976 93 PLLKKILKLAGIKWEEQPGYEADDLIGSLAKKLSKQNITVLIYS 136 (281)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45667888999999999999999888888888999999998887
No 41
>PRK05443 polyphosphate kinase; Provisional
Probab=56.62 E-value=1e+02 Score=28.98 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCEEEECCCCCCCCCCchHHHHHhCCCc------EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHH
Q 028963 105 ADEVIEKNTYSAFGNTRLQERLVGMGVE------EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATL 178 (201)
Q Consensus 105 ~~~vv~K~~~saf~~t~L~~~L~~~gi~------~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al 178 (201)
.|..+. +-|..| ..+.++|++...| ++.+-=++.+-=+..+-.+|.++|-+|+|+.+.-+.++.+.-..-.
T Consensus 339 ~DiLLh-~PY~SF--~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~ 415 (691)
T PRK05443 339 KDILLH-HPYESF--DPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWA 415 (691)
T ss_pred CCEEEE-CCccCc--hHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHH
Confidence 344444 456667 4566788876553 3334444556788899999999999999999999988887777777
Q ss_pred HHHhhcceEEe
Q 028963 179 KNLAYGFAYLF 189 (201)
Q Consensus 179 ~~l~~~~~~v~ 189 (201)
+.|...|++|+
T Consensus 416 ~~L~~aGv~V~ 426 (691)
T PRK05443 416 RRLEEAGVHVV 426 (691)
T ss_pred HHHHHcCCEEE
Confidence 88888999884
No 42
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=55.97 E-value=82 Score=23.67 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=46.7
Q ss_pred CchHHHHHhCCCcEEEEeecc--CchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcc
Q 028963 120 TRLQERLVGMGVEEVIVCGVM--TNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGF 185 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~--T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~ 185 (201)
..|.++|..++..+|+++|=. ...............|-+|.++.=- -.+++.-+.+++.+...+
T Consensus 14 ~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D--v~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 14 QSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD--VTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp HHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE----TTSHHHHHHHHHTSHTTS
T ss_pred HHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC--ccCHHHHHHHHHHHHhcc
Confidence 467889999999999999998 4567777888888889998887522 235667777777776554
No 43
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=55.96 E-value=76 Score=27.70 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=58.3
Q ss_pred CccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCc--hhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 91 DAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTN--LCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 91 g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~--~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
|.|+++.=.+ .+...+++.++ .-|..+|++.|. +++..|+..| .-+..+...|.+. +++++.+-+++-
T Consensus 185 GdELv~~~~~--l~~gqI~dsN~------~~l~a~l~~~G~-e~~~~giv~Dd~~~l~~~i~~a~~~-~DviItsGG~Sv 254 (404)
T COG0303 185 GDELVEPGQP--LEPGQIYDSNS------YMLAALLERAGG-EVVDLGIVPDDPEALREAIEKALSE-ADVIITSGGVSV 254 (404)
T ss_pred CccccCCCCC--CCCCeEEecCH------HHHHHHHHHcCC-ceeeccccCCCHHHHHHHHHHhhhc-CCEEEEeCCccC
Confidence 3455443344 34455666554 367889999998 7888888888 6677777777777 999999999988
Q ss_pred CCHHHHHHHHHH
Q 028963 169 SDLELHEATLKN 180 (201)
Q Consensus 169 ~~~~~h~~al~~ 180 (201)
-+.+....+++.
T Consensus 255 G~~D~v~~~l~~ 266 (404)
T COG0303 255 GDADYVKAALER 266 (404)
T ss_pred cchHhHHHHHHh
Confidence 887777777773
No 44
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=55.58 E-value=44 Score=27.64 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.+++|.++|+-+|-++..-..+.|..+..+|++++++.+...+
T Consensus 47 a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~ 89 (307)
T cd06449 47 ALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVP 89 (307)
T ss_pred HHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3357788888776555555667777888888888887776544
No 45
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=55.50 E-value=69 Score=29.98 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=59.4
Q ss_pred CCEEEECCCCCCCCCCchHHHHHhCCCc------EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHH
Q 028963 105 ADEVIEKNTYSAFGNTRLQERLVGMGVE------EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATL 178 (201)
Q Consensus 105 ~~~vv~K~~~saf~~t~L~~~L~~~gi~------~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al 178 (201)
.|..+. +-|..| ..+.+.|++...+ ++.+-=++.+-=|.....+|.++|-+|+|+-|.-+.++.+....-.
T Consensus 330 ~DiLLh-~PY~Sf--~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa 406 (672)
T TIGR03705 330 KDILLH-HPYESF--DPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWA 406 (672)
T ss_pred cCEEEE-CCccCH--HHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHH
Confidence 444444 345556 3566778876553 3333344456778899999999999999999999999987776666
Q ss_pred HHHhhcceEEe
Q 028963 179 KNLAYGFAYLF 189 (201)
Q Consensus 179 ~~l~~~~~~v~ 189 (201)
+.|+..|++|+
T Consensus 407 ~~le~aG~~vi 417 (672)
T TIGR03705 407 RRLEEAGVHVV 417 (672)
T ss_pred HHHHHcCCEEE
Confidence 78888898875
No 46
>PHA00439 exonuclease
Probab=55.18 E-value=29 Score=28.81 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=37.2
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCC-eEEEec
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGF-RVFFST 163 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~-~v~vv~ 163 (201)
-+.+.+...|+..+..-|+..|-++.+-+..+...|+ +|++++
T Consensus 101 ~i~el~~~~gi~~i~~~G~EADDvIgtla~~~~~~g~~~vvIvS 144 (286)
T PHA00439 101 FLEELMAREEWKSILEPGLEGDDVMGIIGTNPSLFGFKKAVLVS 144 (286)
T ss_pred HHHHHHHhCCCCEEeeCCccHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4566777789999999999999999888888888999 888886
No 47
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=55.10 E-value=91 Score=23.66 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=68.2
Q ss_pred CCCCeEEEEEeccCccCCC-chhHHHHHHHHHHHHHHCCCc--EEEEecc-cCCCCCccccccccCCCccccCCCCcccc
Q 028963 20 NPKSSVLLVIDMQNHFSSI-AKPILDNTLATVQLCRRASIP--VFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELL 95 (201)
Q Consensus 20 ~~~~~aLlviD~Q~~f~~~-~~~~i~~i~~l~~~ar~~g~~--vi~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~g~~~~ 95 (201)
.....-.||+|.-|-+..+ ...+-+.+...++.+++.+.. |+.+-.. ...+ + ++.+-.
T Consensus 37 k~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~-d-----------------~~~~~a 98 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD-D-----------------PDGERA 98 (168)
T ss_pred hhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc-C-----------------ccHHHH
Confidence 3445568999999999866 445667777888888877664 4444322 1111 0 000111
Q ss_pred ccccCCCCCCCEEEEC--CCCCCCCCCchHHHHHhC----CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 96 PEIKGLVAGADEVIEK--NTYSAFGNTRLQERLVGM----GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 96 ~~l~~~~~~~~~vv~K--~~~saf~~t~L~~~L~~~----gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
..+.. .-+-.++.. ..+.++ .++..+++.+ ..++++++|-. ..+=+..|...|...+.++|.+
T Consensus 99 ~~~~~--~lgIpvl~h~~kKP~~~--~~i~~~~~~~~~~~~p~eiavIGDr----l~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 99 EALEK--ALGIPVLRHRAKKPGCF--REILKYFKCQKVVTSPSEIAVIGDR----LFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred HHHHH--hhCCcEEEeCCCCCccH--HHHHHHHhhccCCCCchhEEEEcch----HHHHHHHhhccCceEEEEecCc
Confidence 22222 112223321 122332 3666777655 47899999954 1222677888897777777764
No 48
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=54.96 E-value=6.8 Score=21.75 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=15.5
Q ss_pred CCCCCCCchHHHHHhCCCc
Q 028963 114 YSAFGNTRLQERLVGMGVE 132 (201)
Q Consensus 114 ~saf~~t~L~~~L~~~gi~ 132 (201)
|+.+...+|..+|.+.||.
T Consensus 1 fdtWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCCCHHHHHHHHHHcCCC
Confidence 5667778999999998874
No 49
>PRK05973 replicative DNA helicase; Provisional
Probab=54.33 E-value=28 Score=28.00 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=34.2
Q ss_pred CeEEEEEeccCccCCC--chhHHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 23 SSVLLVIDMQNHFSSI--AKPILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~--~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
+.-+||||.-+.+... ...+...+..|...+++.|+|||.+.+.++.
T Consensus 147 ~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 147 RGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred CCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 3459999998766422 2234445566888899999999999887664
No 50
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.90 E-value=1.1e+02 Score=24.27 Aligned_cols=129 Identities=19% Similarity=0.098 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCC-CCEE--EECCCCCCCCC
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAG-ADEV--IEKNTYSAFGN 119 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~-~~~v--v~K~~~saf~~ 119 (201)
.+...++++...+.|+++|-+......+.. | + -...++++..+.. .. +..+ +.++.
T Consensus 18 ~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--------p---~--~~~~~~~i~~l~~--~~~~~~~~~l~~~~------ 76 (265)
T cd03174 18 TEDKLEIAEALDEAGVDSIEVGSGASPKAV--------P---Q--MEDDWEVLRAIRK--LVPNVKLQALVRNR------ 76 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCcCcccc--------c---c--CCCHHHHHHHHHh--ccCCcEEEEEccCc------
Confidence 455566667777789888777644322110 0 0 1123344445544 22 1111 12111
Q ss_pred CchHHHHHhCCCcEEEEeeccCc---------------hhHHHHHHHHHhCCCeEEEecCCCCC--CCHHHHHHHHHHHh
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTN---------------LCCETTARDAFVRGFRVFFSTDATAT--SDLELHEATLKNLA 182 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~---------------~CV~~Ta~~a~~~G~~v~vv~Da~~~--~~~~~h~~al~~l~ 182 (201)
....+.+.+.|++.|-+..-..+ --+..++..+.+.|+++.+..-.... .+++.-...++.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE 156 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 34456666778888777765552 33556666778888888887744443 67777777777777
Q ss_pred hcceEEeeHH
Q 028963 183 YGFAYLFDCE 192 (201)
Q Consensus 183 ~~~~~v~~~~ 192 (201)
..++..+...
T Consensus 157 ~~g~~~i~l~ 166 (265)
T cd03174 157 EAGADEISLK 166 (265)
T ss_pred HcCCCEEEec
Confidence 7766655443
No 51
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=53.90 E-value=1.2e+02 Score=24.62 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=30.9
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
++++|+..-+..... .++.+.++++..++.|.+++++...
T Consensus 4 ~~~~D~DGtl~~~~~-~~~ga~e~l~~L~~~g~~~~~~Tnn 43 (279)
T TIGR01452 4 GFIFDCDGVLWLGER-VVPGAPELLDRLARAGKAALFVTNN 43 (279)
T ss_pred EEEEeCCCceEcCCe-eCcCHHHHHHHHHHCCCeEEEEeCC
Confidence 678899998876433 4556778888889999998888643
No 52
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.95 E-value=37 Score=27.55 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=28.0
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
-+|+|+|.-.+ ...+..|+..|+|||...+.+.+|.
T Consensus 158 d~l~ViDp~~e------------~iAv~EA~klgIPVvAlvDTn~dpd 193 (252)
T COG0052 158 DVLFVIDPRKE------------KIAVKEANKLGIPVVALVDTNCDPD 193 (252)
T ss_pred CEEEEeCCcHh------------HHHHHHHHHcCCCEEEEecCCCCCc
Confidence 48999997664 2356678999999999998877653
No 53
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=52.57 E-value=74 Score=25.15 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=44.8
Q ss_pred CcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 131 VEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 131 i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
-+-+|+++-.....-+.|+..|.+.|-.|+++.-...+. ..+-....+++.-..+.+.+|++..|
T Consensus 156 s~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~---~~~G~~~Li~~GA~~i~~~~d~~~~~ 220 (220)
T TIGR00732 156 SRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSP---ESDGCHKLIEQGAALITSAKDILETL 220 (220)
T ss_pred cCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCc---cchHHHHHHHCCCEEECCHHHHHHhC
Confidence 367788887777788999999999999999997655442 22223333444444577778877654
No 54
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=52.47 E-value=41 Score=28.49 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=35.0
Q ss_pred CcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHH
Q 028963 131 VEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLEL 173 (201)
Q Consensus 131 i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~ 173 (201)
..+|.|+|-+ -+|=.+|++.+..+||.|.++-+.+-+..+..
T Consensus 2 ~~~VLVtGga-GyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl 43 (343)
T KOG1371|consen 2 GKHVLVTGGA-GYIGSHTVLALLKRGYGVVIVDNLNNSYLESL 43 (343)
T ss_pred CcEEEEecCC-cceehHHHHHHHhCCCcEEEEecccccchhHH
Confidence 4577888864 67889999999999999999999998885443
No 55
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=51.64 E-value=55 Score=27.71 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCch
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRL 122 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L 122 (201)
.+....|.+.+++.|++++-+.+.... .++..++.. -+.|-.-.-..+.+|
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~s----------------------vd~l~~~~v-------~~~KIaS~~~~n~pL 125 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLES----------------------ADFLEDLGV-------PRFKIPSGEITNAPL 125 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHHH----------------------HHHHHhcCC-------CEEEECcccccCHHH
Confidence 467788999999999998888654321 011111100 122222222345677
Q ss_pred HHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCe---EEEecCCCCCCC---HHHHHHHHHHHhhcc
Q 028963 123 QERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFR---VFFSTDATATSD---LELHEATLKNLAYGF 185 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~---v~vv~Da~~~~~---~~~h~~al~~l~~~~ 185 (201)
.+.+.+.|..-|+=+|++|-.=+...+.-..+.|-+ ++++. |++.+. .+..-.++..|+..+
T Consensus 126 L~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llh-C~s~YP~~~~~~nL~~I~~Lk~~f 193 (329)
T TIGR03569 126 LKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLH-CTTEYPAPFEDVNLNAMDTLKEAF 193 (329)
T ss_pred HHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEE-ECCCCCCCcccCCHHHHHHHHHHh
Confidence 777777777777777887766676666666666764 44433 666543 223334445554433
No 56
>PRK10736 hypothetical protein; Provisional
Probab=51.35 E-value=1.6e+02 Score=25.43 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=42.9
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVR-GFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~-G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
.|...|.+.| -+|+.|++-.+- ...-+.+.+. |..+.|+.......-+..|..-.+.+...++-++|
T Consensus 128 ~l~~~la~~g--~~IVSGlA~GiD-~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liS 195 (374)
T PRK10736 128 LFCEELAKNG--LTITSGLARGID-GVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVS 195 (374)
T ss_pred HHHHHHHHCC--CEEECcchhhHH-HHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEE
Confidence 4556666666 488899775322 2223345565 67777888777766677777777777554555665
No 57
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=51.01 E-value=42 Score=28.10 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=29.9
Q ss_pred HhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 127 VGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 127 ~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.++|.++|+-+|-++..--.+.|..+..+|++++++.+...+
T Consensus 60 ~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~ 101 (331)
T PRK03910 60 LAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVP 101 (331)
T ss_pred HHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCC
Confidence 357888888666544445556677777889998888777655
No 58
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=49.89 E-value=40 Score=28.26 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=32.9
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
..++|.++|+.+|-++..=..+.|..|..+|++++++...
T Consensus 65 a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~ 104 (329)
T PRK14045 65 ALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRG 104 (329)
T ss_pred HHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 3457889988778888888888899999999998888774
No 59
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=49.65 E-value=1.4e+02 Score=26.06 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=44.9
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC---CCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA---TATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da---~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
.+.+++.+...++++|.|-- ...+ ..|..+..+|.+|+++.-. ....+++..+...+.++..+..+...
T Consensus 138 ~l~~~l~~~~~~~vvViGgG-~ig~-E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~ 209 (438)
T PRK13512 138 AIDQFIKANQVDKALVVGAG-YISL-EVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 209 (438)
T ss_pred HHHHHHhhcCCCEEEEECCC-HHHH-HHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEEC
Confidence 34455555556899999843 2333 2355567789999998743 23346777777788888887776543
No 60
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=49.34 E-value=1.4e+02 Score=24.94 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCC--
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNT-- 120 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t-- 120 (201)
=..|..+++.+...|..|+-+++.+..--. .. ... -.++.+..+.. .++- .+-..++..|.+.
T Consensus 15 Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~---------~~-~~~--l~~~~v~~~~~--~gGt-~LgtsR~~~~~~~~~ 79 (301)
T TIGR02482 15 NAAIRAVVRTAIYHGFEVYGIRRGYKGLIN---------GE-IKP--LESKNVSGIIH--RGGT-ILGTARCPEFKTEEG 79 (301)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHHhcC---------CC-eEe--CCHHHHhhHHh--CCCc-eeccCCCCccCCHHH
Confidence 344556777888888888888776542100 00 000 00112222333 3343 3444455555432
Q ss_pred --chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHh-CCCeEEEec
Q 028963 121 --RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFV-RGFRVFFST 163 (201)
Q Consensus 121 --~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~-~G~~v~vv~ 163 (201)
...+.|++++++.|++.|-... ..+|....+ .|..|+.+.
T Consensus 80 ~~~~~~~l~~~~Id~Li~IGGdgs---~~~a~~L~e~~~i~vigiP 122 (301)
T TIGR02482 80 RQKAVENLKKLGIEGLVVIGGDGS---YTGAQKLYEEGGIPVIGLP 122 (301)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchH---HHHHHHHHHhhCCCEEeec
Confidence 2456788999999999998754 455555555 677777653
No 61
>PRK10098 putative dehydrogenase; Provisional
Probab=48.58 E-value=39 Score=28.88 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
...++++||-||+|-. -.....+..+++.||++|+-++.+++.+.
T Consensus 76 ~~~a~~~vDg~~g~G~--~a~~~Am~~aie~Ar~~Gi~~v~vrnS~H 120 (350)
T PRK10098 76 DAGAVLTLDGDRGFGQ--VVAHEAMALGIERARQHGICAVALRNSHH 120 (350)
T ss_pred cCCcEEEEECCCCccH--HHHHHHHHHHHHHHHHhCEEEEEEecCCC
Confidence 4679999999999843 23456778899999999999999987655
No 62
>PTZ00445 p36-lilke protein; Provisional
Probab=48.22 E-value=62 Score=25.71 Aligned_cols=48 Identities=6% Similarity=0.023 Sum_probs=35.2
Q ss_pred CCCeEEEEEeccCccCC--------Cc-------hhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 21 PKSSVLLVIDMQNHFSS--------IA-------KPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 21 ~~~~aLlviD~Q~~f~~--------~~-------~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
....=+|++|+-|-.+. +. ..+.+....++.+.++.|++|+.+.+...
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 34456888898886553 21 11567788999999999999999987644
No 63
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=47.66 E-value=1.4e+02 Score=25.79 Aligned_cols=68 Identities=16% Similarity=0.041 Sum_probs=44.3
Q ss_pred hHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC----CCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 122 LQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT----ATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~----~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
+.+.|.+...++++|+|--.- =...|..+...|.+|+++...- ...+++..+...+.++..+.++...
T Consensus 140 l~~~l~~~~~~~vvVvGgG~~--g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~ 211 (444)
T PRK09564 140 LKELLKDEEIKNIVIIGAGFI--GLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLN 211 (444)
T ss_pred HHHHHhhcCCCEEEEECCCHH--HHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcC
Confidence 444454445678999885432 2334556677899999885432 1356777788888888887776643
No 64
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=47.21 E-value=1.3e+02 Score=25.33 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHH-HCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCC-
Q 028963 42 ILDNTLATVQLCR-RASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGN- 119 (201)
Q Consensus 42 ~i~~i~~l~~~ar-~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~- 119 (201)
+=..|..+++.+. ..|..|+-+++.+..--. ...... ..++-+..+.. .++. .+-..++..|..
T Consensus 14 mN~~i~~~v~~a~~~~g~~v~g~~~G~~GL~~---------~~~~~l--~~~~~v~~~~~--~GGt-~LgtsR~~~~~~~ 79 (324)
T TIGR02483 14 LNAVIRGVVRRAIAEYGWEVIGIRDGWRGLLE---------GDTVPL--LDLEDVRGILP--RGGT-ILGSSRTNPFKYE 79 (324)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEccCHHHhCC---------CCeEec--CCHHHHHHHHh--CCCc-cccCCCCCccccC
Confidence 3345566777777 448888888765542100 000000 01122233333 3443 455556666642
Q ss_pred ----CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 ----TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 ----t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
....+.|++.+|+.|++.|-.... .+|....+.|.+|+.+.
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~---~~a~~L~~~gi~vigiP 124 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTL---GIARRLADKGLPVVGVP 124 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHH---HHHHHHHhcCCCEEeec
Confidence 245667888999999999987663 56666667888887765
No 65
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.98 E-value=1.4e+02 Score=24.19 Aligned_cols=20 Identities=5% Similarity=0.026 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCCcEEEEe
Q 028963 45 NTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 45 ~i~~l~~~ar~~g~~vi~~~ 64 (201)
.+..|.+.+++.|+|++...
T Consensus 67 gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 67 GIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred HHHHHHHHHHHcCCCEEEee
Confidence 44444555555555555443
No 66
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=46.09 E-value=1.1e+02 Score=28.51 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=60.4
Q ss_pred CCCEEEECCCCCCCCCCchHHHHHhCCCc------EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHH
Q 028963 104 GADEVIEKNTYSAFGNTRLQERLVGMGVE------EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEAT 177 (201)
Q Consensus 104 ~~~~vv~K~~~saf~~t~L~~~L~~~gi~------~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~a 177 (201)
+.|..+. +-|.+|. ...++|+..-.| +.-|-=+..|-=+-....+|.+.|-+|+|+...-+-+|+++--.=
T Consensus 342 e~DiLlh-HPYeSF~--~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~W 418 (696)
T COG0855 342 EGDILLH-HPYESFE--PVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHW 418 (696)
T ss_pred hcCeEEE-CchhhhH--HHHHHHHHhhcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHH
Confidence 3454444 5677784 477788765433 223344556666788889999999999999999999998876666
Q ss_pred HHHHhhcceEEe
Q 028963 178 LKNLAYGFAYLF 189 (201)
Q Consensus 178 l~~l~~~~~~v~ 189 (201)
-+.|...|++|+
T Consensus 419 Ak~LE~AGvhVv 430 (696)
T COG0855 419 AKRLERAGVHVV 430 (696)
T ss_pred HHHHHhCCcEEE
Confidence 677788888876
No 67
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=45.84 E-value=1.2e+02 Score=24.45 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred EEECCCCCCCCCCc---hHHHHH---hCCCcEEEEeeccCchhHHHHHHH-----HHhCCCeEEEecCCCCCCCHHHHHH
Q 028963 108 VIEKNTYSAFGNTR---LQERLV---GMGVEEVIVCGVMTNLCCETTARD-----AFVRGFRVFFSTDATATSDLELHEA 176 (201)
Q Consensus 108 vv~K~~~saf~~t~---L~~~L~---~~gi~~lvi~G~~T~~CV~~Ta~~-----a~~~G~~v~vv~Da~~~~~~~~h~~ 176 (201)
-+-|-.++.+.=.+ |.+.+. ++|| .+...|-..+.|+.+...+ +.+.||+++=++|.+-+.+.+....
T Consensus 26 D~lKfg~Gt~~l~~~~~l~eki~la~~~~V-~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~r 104 (237)
T TIGR03849 26 TFVKFGWGTSALIDRDIVKEKIEMYKDYGI-KVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCN 104 (237)
T ss_pred eeEEecCceEeeccHHHHHHHHHHHHHcCC-eEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHH
Confidence 35565444443222 555444 4565 3555577888999887776 5688999999999999999888888
Q ss_pred HHHHHhhcce
Q 028963 177 TLKNLAYGFA 186 (201)
Q Consensus 177 al~~l~~~~~ 186 (201)
.++.+...+-
T Consensus 105 lI~~~~~~g~ 114 (237)
T TIGR03849 105 LIERAKDNGF 114 (237)
T ss_pred HHHHHHhCCC
Confidence 8887775543
No 68
>PRK03202 6-phosphofructokinase; Provisional
Probab=45.80 E-value=1.6e+02 Score=24.73 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCC---
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGN--- 119 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~--- 119 (201)
=..+..+++.++.+|..|+-+++....--. ...... .++-+..+.. .++. .+--.++..|..
T Consensus 17 Na~i~~~~~~~~~~g~~v~g~~~G~~GL~~---------~~~~~l---~~~~v~~~~~--~gGs-~LgtsR~~~~~~~~~ 81 (320)
T PRK03202 17 NAAIRAVVRTAISEGLEVYGIYDGYAGLLE---------GDIVKL---DLKSVSDIIN--RGGT-ILGSARFPEFKDEEG 81 (320)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecChhhhcC---------CCEEEC---CHHHHhhHHh--CCCc-ccccCCCCCcCCHHH
Confidence 344567888888889988888876542110 000000 0112222333 3332 344445555542
Q ss_pred -CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 -TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 -t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
....+.|++++++.+++.|-... ..++..+.+.|.+|+.+.
T Consensus 82 ~~~~~~~l~~~~Id~Li~IGGd~s---~~~a~~L~e~~i~vigiP 123 (320)
T PRK03202 82 RAKAIENLKKLGIDALVVIGGDGS---YMGAKRLTEHGIPVIGLP 123 (320)
T ss_pred HHHHHHHHHHcCCCEEEEeCChHH---HHHHHHHHhcCCcEEEec
Confidence 24566688899999999998643 455666667788887765
No 69
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=45.25 E-value=1.8e+02 Score=24.22 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=42.7
Q ss_pred CccccccccCCCCCCCEEE-ECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 91 DAELLPEIKGLVAGADEVI-EKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 91 g~~~~~~l~~~~~~~~~vv-~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
|.-+++++... ++++.+| .-++. +....+.++++|.+-+- +=.--=-=|...+......||+++++-+.
T Consensus 54 g~~fve~l~e~-p~~~~VIfsAHGV----s~~v~~~a~~r~l~v~D-ATCPlVtKvh~~v~~~~~~G~~iIliG~~ 123 (294)
T COG0761 54 GAIFVEELDEV-PDGATVIFSAHGV----SPAVREEAKERGLKVID-ATCPLVTKVHKEVERYAREGYEIILIGHK 123 (294)
T ss_pred CCEeccccccC-CCCCEEEEECCCC----CHHHHHHHHHCCCEEEe-cCCCcchHHHHHHHHHHhCCCEEEEEccC
Confidence 34556666664 3445443 44443 35788899999977332 11111123557788888999999999874
No 70
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=45.23 E-value=52 Score=21.63 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=25.6
Q ss_pred CCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 129 MGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 129 ~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
.|.++++|.|.+|.+...+..-.||..|-+++=|
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV 70 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV 70 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence 6789999999999999999999999877766543
No 71
>PRK14071 6-phosphofructokinase; Provisional
Probab=45.21 E-value=1.1e+02 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=30.2
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhC-CCeEEEec
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVR-GFRVFFST 163 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~-G~~v~vv~ 163 (201)
...+.|++++|+.+++.|-.... .++..+.+. |.+|+-+.
T Consensus 98 ~~~~~l~~~~Id~Li~IGGdgS~---~~a~~L~~~~~i~vIgiP 138 (360)
T PRK14071 98 EIIDGYHSLGLDALIGIGGDGSL---AILRRLAQQGGINLVGIP 138 (360)
T ss_pred HHHHHHHHcCCCEEEEECChhHH---HHHHHHHHhcCCcEEEec
Confidence 35677889999999999988664 466666554 88877764
No 72
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=44.96 E-value=1.8e+02 Score=24.17 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=56.5
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCcccc------cccc
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELL------PEIK 99 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~------~~l~ 99 (201)
=|++|...+|-+ ..++.+.++...+.|+-=|++.+...+. . |-. ..+.+++ ..++
T Consensus 80 PviaD~d~GyG~-----~~~v~r~V~~~~~aGaagi~IEDq~~pK-~------------cg~-~~~~~lv~~ee~~~kI~ 140 (292)
T PRK11320 80 PLLVDIDTGFGG-----AFNIARTVKSMIKAGAAAVHIEDQVGAK-R------------CGH-RPNKEIVSQEEMVDRIK 140 (292)
T ss_pred CEEEECCCCCCC-----HHHHHHHHHHHHHcCCeEEEEecCCCcc-c------------cCC-CCCCcccCHHHHHHHHH
Confidence 489999999974 4566677777778899888887753211 1 100 0111221 1111
Q ss_pred CC---CCCCCEEEECCCCCCCCCCchHHHHH------hCCCcEEEEeeccC
Q 028963 100 GL---VAGADEVIEKNTYSAFGNTRLQERLV------GMGVEEVIVCGVMT 141 (201)
Q Consensus 100 ~~---~~~~~~vv~K~~~saf~~t~L~~~L~------~~gi~~lvi~G~~T 141 (201)
.. ....+.+|. -+-++|...++++.++ +.|.+-|++-|..+
T Consensus 141 Aa~~a~~~~d~~Ii-ARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~ 190 (292)
T PRK11320 141 AAVDARTDPDFVIM-ARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMTE 190 (292)
T ss_pred HHHHhccCCCeEEE-EecCcccccCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 10 022344444 3556665567777765 36899999988765
No 73
>CHL00067 rps2 ribosomal protein S2
Probab=44.19 E-value=62 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=30.2
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
...+++|+|.+++. .++.+|+..|+|||...+.+.+|.
T Consensus 161 ~P~~iiv~d~~~~~------------~ai~Ea~~l~IPvIaivDTn~~p~ 198 (230)
T CHL00067 161 LPDIVIIIDQQEEY------------TALRECRKLGIPTISILDTNCDPD 198 (230)
T ss_pred CCCEEEEeCCcccH------------HHHHHHHHcCCCEEEEEeCCCCcc
Confidence 34589999998853 567788999999999999877653
No 74
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=43.79 E-value=41 Score=25.99 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=31.1
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
||++||=.-++......++...+.++++++.|++++.+.-.
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR 41 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSK 41 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57888888888654445555678888899999998888643
No 75
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=43.49 E-value=45 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=35.0
Q ss_pred hCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCC
Q 028963 128 GMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATA 167 (201)
Q Consensus 128 ~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~ 167 (201)
..|.+++|=+|-.-+.-+.+||.-|..+|++.+++-+--.
T Consensus 61 ~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~ 100 (323)
T COG2515 61 RKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE 100 (323)
T ss_pred hcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc
Confidence 3799999999999999999999999999999777665544
No 76
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=43.26 E-value=42 Score=25.17 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=26.4
Q ss_pred CeEEEEEeccCccCCCc----hhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 23 SSVLLVIDMQNHFSSIA----KPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~----~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
+.-+||||--..+.... .....-++.+.+.++..|+.|+.+.|...
T Consensus 141 ~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 141 GPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHTNK 190 (193)
T ss_dssp --SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred CCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 46799999888887642 22344555666677888999999987654
No 77
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.12 E-value=41 Score=32.47 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=40.0
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+.+.++|+..|+..+..-|+..|-.+.+-|..+...|++|+|++
T Consensus 87 ~~i~~~l~~~gi~~i~~~g~EADDiIatla~~~~~~g~~v~IvS 130 (887)
T TIGR00593 87 PLIKELLDALGIPILEVEGYEADDVIATLAKQAEKEGYEVRIIS 130 (887)
T ss_pred HHHHHHHHHCCCcEEeeCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46778899999999999999999999998999999999999887
No 78
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=42.92 E-value=36 Score=28.42 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=29.5
Q ss_pred CcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 131 VEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 131 i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
.+-|+|+|-.++-=+.+-|.|+-.|||-|+|..
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~ 35 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTV 35 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEe
Confidence 356888999999999999999999999999864
No 79
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=42.36 E-value=51 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
.+++|.++|+-+|-++..=-.+.|..+..+|++++++.+..
T Consensus 51 a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~ 91 (311)
T TIGR01275 51 ALSKGADTVITVGAIQSNHARATALAAKKLGLDAVLVLREK 91 (311)
T ss_pred HHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCC
Confidence 34678888888876555555677777888999988888874
No 80
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=42.25 E-value=2e+02 Score=24.40 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=13.0
Q ss_pred CCCeEEEecCCCCCCCHHHHHHHHHHHh
Q 028963 155 RGFRVFFSTDATATSDLELHEATLKNLA 182 (201)
Q Consensus 155 ~G~~v~vv~Da~~~~~~~~h~~al~~l~ 182 (201)
.|+.+.+..+.....+.+.-+.+.+.++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~v~~~~~~~~ 74 (367)
T cd08182 47 LGTLVVVFDDVQPNPDLEDLAAGIRLLR 74 (367)
T ss_pred cCCeEEEEcCcCCCcCHHHHHHHHHHHH
Confidence 4455554444444444444444444444
No 81
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=42.19 E-value=11 Score=29.74 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=46.3
Q ss_pred chHHHHHhCCCcEEEEeeccCchhH-----HHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHH
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCC-----ETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLE 195 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV-----~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~ 195 (201)
.+..+|++.|+++++++|--.---. ..++...+- .++. ....-|+..-....+.++..|.+|+...+++
T Consensus 3 ~~i~~lk~~gv~~vvmaG~v~rp~~~~~~~D~~~~~~l~-----~~~~-~l~~gDd~lL~av~~~le~~G~~vv~~~~~~ 76 (214)
T PF06230_consen 3 KIIKFLKREGVTRVVMAGKVKRPIFSDLRPDWRALKLLP-----RLLK-ALDRGDDALLRAVIDELEKEGFKVVGAHEYL 76 (214)
T ss_pred HHHHHHHHcCCCEEEEeecccCccccccCCCHHHHHHHH-----HHHH-HHhcCCHHHHHHHHHHHHHCCCEEEcHHHhh
Confidence 3567899999999999997622111 111111111 0000 1133466677888889999999999999998
Q ss_pred Hhh
Q 028963 196 AGL 198 (201)
Q Consensus 196 ~~l 198 (201)
.+|
T Consensus 77 p~L 79 (214)
T PF06230_consen 77 PDL 79 (214)
T ss_pred HHh
Confidence 776
No 82
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=42.10 E-value=68 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
...-||++||=.-++.....+.+...+.+..++++|++++.+.
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaT 47 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCS 47 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEc
Confidence 3456999999998887644455677788899999999988875
No 83
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=42.05 E-value=54 Score=27.79 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
...+.+++|-||+|-. -.....+...++.||++|+-+|.++..+.
T Consensus 72 ~~~a~a~~Dg~~g~G~--~~~~~am~~aiekAr~~Gi~~v~vrns~H 116 (332)
T PRK13260 72 SLGAIEQWDAQRAIGN--LTAKKMMDRAIELARDHGIGLVALRNANH 116 (332)
T ss_pred cCCcEEEEECCCCchH--HHHHHHHHHHHHHHHHhCEEEEEEcCCCc
Confidence 4678999999998842 23456778899999999999999987664
No 84
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=41.94 E-value=42 Score=29.80 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=30.7
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
-++|+.|||.-++ +-+...+|.+-||-+|+||+..-.
T Consensus 105 vDsAvMVIDaAKG-------iE~qT~KLfeVcrlR~iPI~TFiN 141 (528)
T COG4108 105 VDSAVMVIDAAKG-------IEPQTLKLFEVCRLRDIPIFTFIN 141 (528)
T ss_pred hheeeEEEecccC-------ccHHHHHHHHHHhhcCCceEEEee
Confidence 4578889888665 577899999999999999987754
No 85
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=41.89 E-value=62 Score=27.41 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=29.7
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
..+++|+|.+++ ...+..|+..|+|||...+.+-+|.
T Consensus 153 Pd~viv~d~~~e------------~~AI~EA~kl~IPvIaivDTn~dp~ 189 (326)
T PRK12311 153 PDLLFVIDTNKE------------DIAIQEAQRLGIPVAAIVDTNCDPD 189 (326)
T ss_pred CCEEEEeCCccc------------hHHHHHHHHcCCCEEEEeeCCCCcc
Confidence 348999998875 3567788999999999998877653
No 86
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.80 E-value=61 Score=25.30 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=28.3
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
.+|+|+|.+.+. ..+..|+..|+|||-..+..-+|.
T Consensus 110 dlliv~dp~~~~------------~Av~EA~~l~IP~Iai~DTn~dp~ 145 (196)
T TIGR01012 110 EVVVVTDPRADH------------QALKEASEVGIPIVALCDTDNPLR 145 (196)
T ss_pred CEEEEECCcccc------------HHHHHHHHcCCCEEEEeeCCCCCc
Confidence 378888888764 456678899999999998876653
No 87
>PRK10976 putative hydrolase; Provisional
Probab=41.73 E-value=48 Score=26.45 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=33.2
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
|+++||=.-+++....+-+...+.++.+++.|++++.+.
T Consensus 4 li~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaT 42 (266)
T PRK10976 4 VVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFAT 42 (266)
T ss_pred EEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 899999999987666677778888999999999888875
No 88
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=41.51 E-value=58 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=33.7
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
-||++|+=.-+++....+-+...+.++.+++.|+.++.+.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaT 43 (270)
T PRK10513 4 KLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTT 43 (270)
T ss_pred EEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEec
Confidence 4899999999987655677788888999999999888875
No 89
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=41.44 E-value=2.2e+02 Score=24.12 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCC-
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNT- 120 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t- 120 (201)
+=..|..+++.++..|..|+-..+....--. .. +..= .++.+..+.. .++- .+-..++..|.+.
T Consensus 15 ~N~~i~~~v~~~~~~g~~v~G~~~G~~GL~~---------~~-~~~l--~~~~v~~~~~--~gGs-~LgtsR~~~~~~~~ 79 (338)
T cd00363 15 MNAAIRGVVRSAIAEGLEVYGIYEGYAGLVE---------GD-IKEL--DWESVSDIIN--RGGT-IIGSARCKEFRTEE 79 (338)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecChHHhCC---------CC-eEeC--CHHHhcchhh--CCCe-ecccCCCCccCCHH
Confidence 3345566888888888888888766542100 00 0000 0011222222 3333 4444455555432
Q ss_pred ---chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhC------CCeEEEec
Q 028963 121 ---RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVR------GFRVFFST 163 (201)
Q Consensus 121 ---~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~------G~~v~vv~ 163 (201)
...+.|++.+++.|++.|-.-.. .+|....+. |.+|+.+.
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd~s~---~~a~~L~e~~~~~~~~i~vigiP 128 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGSY---TGADLLTEEWPSKYQGFNVIGLP 128 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHHH---HHHHHHHHHHHhcCCCccEEEee
Confidence 26678889999999999977443 333333332 56666554
No 90
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.19 E-value=58 Score=28.64 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=37.9
Q ss_pred CCCeEEEEEeccC-ccCCC-------chhHHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 21 PKSSVLLVIDMQN-HFSSI-------AKPILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 21 ~~~~aLlviD~Q~-~f~~~-------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
..+..|+|||-.+ -|.+. -.++.+-.+.|.+.|+..|++++.+.|...+
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKe 222 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKE 222 (456)
T ss_pred hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEccc
Confidence 3567899999555 45432 2457888899999999999999999887665
No 91
>PRK06381 threonine synthase; Validated
Probab=41.15 E-value=1.9e+02 Score=23.88 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=31.6
Q ss_pred HHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 125 RLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 125 ~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
.++++|.++|+. +-+-|.+ .+.|..+...|++++++.+...+ ...++.|+..|++|+..
T Consensus 57 ~a~~~g~~~lv~-aSsGN~g-~alA~~aa~~G~~~~ivvp~~~~------~~~~~~l~~~GA~V~~~ 115 (319)
T PRK06381 57 RAMRLGYSGITV-GTCGNYG-ASIAYFARLYGLKAVIFIPRSYS------NSRVKEMEKYGAEIIYV 115 (319)
T ss_pred HHHHcCCCEEEE-eCCcHHH-HHHHHHHHHcCCcEEEEECCCCC------HHHHHHHHHcCCEEEEc
Confidence 344566666543 3333333 34555666777777776665432 12334556666666544
No 92
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.92 E-value=53 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=32.8
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
||+.||=.-+++......+.....+++.+++|+|||.+.-
T Consensus 3 LIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTG 42 (302)
T PRK12702 3 LVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSL 42 (302)
T ss_pred EEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 7889999888876555666778888899999999999863
No 93
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=40.72 E-value=47 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=33.7
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
-||+.|+=.-++.....+.+...+.++.+++.|+.++.+.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaT 43 (272)
T PRK10530 4 RVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVT 43 (272)
T ss_pred cEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEc
Confidence 3899999999987666677788889999999999888775
No 94
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=40.57 E-value=50 Score=26.53 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=33.0
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
|++.|+=.-++.....+-+...+.++.+++.|+.++.+.
T Consensus 4 li~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaT 42 (272)
T PRK15126 4 LAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFAT 42 (272)
T ss_pred EEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEEC
Confidence 899999999887666677778888899999999888875
No 95
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=40.49 E-value=58 Score=27.83 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=35.9
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
...+.+++|-+++|-. -.....+...++.||+.|+-++.+++.+.
T Consensus 72 e~~a~a~vDg~~g~G~--~a~~~Am~~aiekAr~~Gi~~v~v~ns~H 116 (349)
T TIGR03175 72 TGPCTAIFHGDNGAGQ--VAAKMAMEHAIEIAKKSGVAVVGISRMSH 116 (349)
T ss_pred ecCcEEEEECCCCchH--HHHHHHHHHHHHHHHHhCEEEEEecCCCc
Confidence 4568999999998843 23456778899999999999999987665
No 96
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.94 E-value=74 Score=25.77 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=43.7
Q ss_pred HHHHhCCCcEEEEeeccCchhHHHHHH-----HHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 124 ERLVGMGVEEVIVCGVMTNLCCETTAR-----DAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 124 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~-----~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
+..++.|| .++..|...++|+.+... .+.+.||+.+=++|.+-+.+.+.....++..+..|-.|++
T Consensus 61 ~l~~~~gV-~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 61 DLAHSHGV-YVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHCTT--EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHcCC-eEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 34455666 577888888888875555 4558999999999999999999888889998887656654
No 97
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=39.89 E-value=63 Score=24.97 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=34.1
Q ss_pred CCCeEEEEEeccCccCCC---ch-------h-HHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 21 PKSSVLLVIDMQNHFSSI---AK-------P-ILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 21 ~~~~aLlviD~Q~~f~~~---~~-------~-~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
..+..|||||-...+... .. . +..-+..|...+++++++||.+.+....
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~ 171 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAK 171 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeee
Confidence 446789999998877532 11 2 2333455777789999999999887553
No 98
>PRK08329 threonine synthase; Validated
Probab=39.80 E-value=1.9e+02 Score=24.50 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 124 ERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 124 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
..+++.|.++|+.+. +-|. -.+.|.-+...|++++|+...-.+ ..-+..++..|++|+..
T Consensus 97 ~~a~~~g~~~vv~aS-sGN~-g~alA~~aa~~G~~~~v~vp~~~~------~~k~~~~~~~GA~v~~v 156 (347)
T PRK08329 97 AKLKEEGINEVVIDS-SGNA-ALSLALYSLSEGIKVHVFVSYNAS------KEKISLLSRLGAELHFV 156 (347)
T ss_pred HHHHHcCCCEEEEEC-CCcH-HHHHHHHHHHcCCcEEEEECCCCh------HHHHHHHHHcCCEEEEE
Confidence 345668899988876 4444 445566667899998888654322 23445556667777644
No 99
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=39.71 E-value=2e+02 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=8.4
Q ss_pred hHHHHHhCCCcEEEEeec
Q 028963 122 LQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~ 139 (201)
+.+.|++.|++..++.|+
T Consensus 46 v~~~L~~~g~~~~~~~~v 63 (374)
T cd08189 46 VLEALEGAGIEYAVYDGV 63 (374)
T ss_pred HHHHHHhcCCeEEEeCCC
Confidence 344444555544444444
No 100
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=39.69 E-value=44 Score=26.35 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=29.6
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
|++.|+-.-+... ....+...+.++.+++.|++++.+.
T Consensus 1 li~~DlDGTLl~~-~~~~~~~~~ai~~l~~~G~~~vi~T 38 (225)
T TIGR02461 1 VIFTDLDGTLLPP-GYEPGPAREALEELKDLGFPIVFVS 38 (225)
T ss_pred CEEEeCCCCCcCC-CCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5778888887763 3456667888889999999999884
No 101
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=39.41 E-value=43 Score=26.09 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=33.0
Q ss_pred CCeEEEEEeccCccCCC-----c------hhHHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 22 KSSVLLVIDMQNHFSSI-----A------KPILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~-----~------~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
.+.-|||||-...+... . ..+...+..|.+.+++++++|+.+.+....
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~ 164 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSD 164 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceec
Confidence 45679999998765421 1 122333455778889999999999887653
No 102
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=39.05 E-value=57 Score=23.77 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=28.1
Q ss_pred CchHHHHHhCCCcEEEEeeccC-chhHHHHHHHHHhCCCeEEEe
Q 028963 120 TRLQERLVGMGVEEVIVCGVMT-NLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T-~~CV~~Ta~~a~~~G~~v~vv 162 (201)
.++.+++++.++++|+|+==.. ...+..=...+.+.|-+|.++
T Consensus 131 ~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 131 DDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 5899999999999999995554 455555555666778888776
No 103
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=38.94 E-value=68 Score=25.55 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=36.5
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
.=||++||=.-++.....+-+.....++.+++.|++++.+.-.
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR 45 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGR 45 (264)
T ss_pred eeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3489999999999876678889999999999999998888643
No 104
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=38.48 E-value=2.5e+02 Score=23.83 Aligned_cols=104 Identities=14% Similarity=0.002 Sum_probs=56.2
Q ss_pred CccccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC---CcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 91 DAELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG---VEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 91 g~~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g---i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
....+.++.. ..+-+||.-.. +..+.| ++--+.+..| -.+|.++|--.+.-+.+-+..+...|.+|.++.
T Consensus 111 ~~~~~~~~a~--~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~ 187 (331)
T PRK02102 111 KQEIVEELAK--YSGVPVWNGLT-DEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICA 187 (331)
T ss_pred chHHHHHHHH--hCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEC
Confidence 3345566665 44556666533 334433 2222222223 368888887644434444666667899999988
Q ss_pred CCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHh
Q 028963 164 DATATSDLELHEATLKNLAYGFAYLFDCERLEAG 197 (201)
Q Consensus 164 Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~ 197 (201)
--.-...++..+.+-+..+..++.+.-++++-++
T Consensus 188 P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea 221 (331)
T PRK02102 188 PKELWPEEELVALAREIAKETGAKITITEDPEEA 221 (331)
T ss_pred CcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHH
Confidence 6555555555544444444455555444444333
No 105
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.16 E-value=1.7e+02 Score=23.49 Aligned_cols=68 Identities=18% Similarity=-0.030 Sum_probs=40.1
Q ss_pred HHHhCCCcEEEEeeccCch-hHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 125 RLVGMGVEEVIVCGVMTNL-CCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 125 ~L~~~gi~~lvi~G~~T~~-CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
...+.|++.+-|+--.++. -+...+..+.++|+.|.+---.+...+++.-....+.+...++..+...
T Consensus 93 ~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 161 (263)
T cd07943 93 MAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT 161 (263)
T ss_pred HHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3345677776665444332 4556677777788877665533444566666666666666666555433
No 106
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=37.11 E-value=73 Score=18.49 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHCCCcEEEEeccc
Q 028963 40 KPILDNTLATVQLCRRASIPVFFTRHCH 67 (201)
Q Consensus 40 ~~~i~~i~~l~~~ar~~g~~vi~~~~~~ 67 (201)
..+..+...+++.+...+ ||+.+++..
T Consensus 5 te~r~~~~~~l~~v~~~~-pv~It~~g~ 31 (52)
T TIGR01552 5 SEAKNKLGELLKRVRDGE-PVTITKRGR 31 (52)
T ss_pred HHHHHHHHHHHHHHHCCC-CEEEEECCc
Confidence 346678889999998777 999998764
No 107
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=37.09 E-value=2.1e+02 Score=22.63 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccC-CCCccccccccCCCCCCCEEEECCCCCCCCCCch
Q 028963 44 DNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDG-TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRL 122 (201)
Q Consensus 44 ~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L 122 (201)
.++.+-++..++.|+..+|.--.. ++ +.++ +.|.+++.+++. ...+..++-+-. .-.....
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~DimD--------------g~-fvpn~~~G~~~v~~lr~--~~~~~~lDvHLm-~~~p~~~ 80 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVDVMD--------------GH-FVPNLSFGPPVVKSLRK--HLPNTFLDCHLM-VSNPEKW 80 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccc--------------Cc-cCCCcCcCHHHHHHHHh--cCCCCCEEEEEC-CCCHHHH
Confidence 567788888899999999984321 11 3444 566777888876 321222332221 1111234
Q ss_pred HHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCC
Q 028963 123 QERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATA 167 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~ 167 (201)
.+.+.+.|++.+.+=+-++..-+..+...+.++|..+-+.-....
T Consensus 81 i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t 125 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT 125 (228)
T ss_pred HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC
Confidence 466677899999988887665466777777888988777665443
No 108
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=37.02 E-value=89 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 145 CETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 145 V~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
+...-.++.++|-+|.++.|+.++ ...++.|+..|+++..
T Consensus 65 i~~aL~~aa~rGV~Vril~D~~~~------~~~~~~L~~~Gv~v~~ 104 (369)
T PHA03003 65 ILDKLKEAAESGVKVTILVDEQSG------DKDEEELQSSNINYIK 104 (369)
T ss_pred HHHHHHHhccCCCeEEEEecCCCC------CccHHHHHHcCCEEEE
Confidence 556666777899999999998753 3334667777777654
No 109
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=36.83 E-value=82 Score=24.62 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=32.1
Q ss_pred CeEEEEEeccCccCCCc------hhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 23 SSVLLVIDMQNHFSSIA------KPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~------~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
+.-+||||.-..+.... ..+..-+..|-..|++.+++||.+.+..+
T Consensus 123 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 123 GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 55799999887654331 12333455666778899999999987655
No 110
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=36.80 E-value=48 Score=24.33 Aligned_cols=50 Identities=8% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
..+++=++|+.-..+.....---....++++-.+.|.|||...+..+.|.
T Consensus 41 ~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~ 90 (138)
T PF04312_consen 41 TTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPE 90 (138)
T ss_pred ceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 46777788887766543111111234455666779999999999987664
No 111
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=36.74 E-value=75 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=38.1
Q ss_pred CeEEEEEeccCccCCC-----------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 23 SSVLLVIDMQNHFSSI-----------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~-----------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
+.-|||||.-..+.+. ...+-..+..|...++.++..||++.+....+.
T Consensus 141 ~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~ 200 (279)
T COG0468 141 KIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIG 200 (279)
T ss_pred CCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecC
Confidence 4779999999987753 123566777788889999999999998876553
No 112
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=36.70 E-value=2.2e+02 Score=24.16 Aligned_cols=107 Identities=12% Similarity=0.032 Sum_probs=60.4
Q ss_pred CCccccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC---C--cEEEEeeccCchhHHHHHHHHHhCCCeEE
Q 028963 90 ADAELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG---V--EEVIVCGVMTNLCCETTARDAFVRGFRVF 160 (201)
Q Consensus 90 ~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g---i--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~ 160 (201)
.....+.++.. ...-+||.-.. +.++.| ++--+.+..| + .+|.++|-..+.-+.+.+..+...|+++.
T Consensus 109 ~~~~~~~~~a~--~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~ 185 (336)
T PRK03515 109 YGQEIVETLAE--YAGVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLR 185 (336)
T ss_pred CChHHHHHHHH--hCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEE
Confidence 34455666666 45566666422 333333 2222333332 3 48888897544444455666667899999
Q ss_pred EecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 161 FSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 161 vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
++.--.--..++..+.+.+..+..++.+.-++++.+.+.
T Consensus 186 ~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~ 224 (336)
T PRK03515 186 LVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVK 224 (336)
T ss_pred EECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhC
Confidence 987654444555555555555556666665566555443
No 113
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=36.62 E-value=1.7e+02 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=15.1
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|...... .+.++...++|++|+++
T Consensus 11 k~~lItGa~~~iG-~~ia~~l~~~G~~vv~~ 40 (265)
T PRK07097 11 KIALITGASYGIG-FAIAKAYAKAGATIVFN 40 (265)
T ss_pred CEEEEeCCCchHH-HHHHHHHHHCCCeEEEE
Confidence 4555555554332 34444555556665544
No 114
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=36.53 E-value=2.1e+02 Score=23.66 Aligned_cols=58 Identities=17% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
+.+.|.++|+.+ -..|.+. +.|..+..+|++++++.+-..+ ..-++.|+..|++|+..
T Consensus 65 a~~~g~~~vv~~-SsGN~g~-alA~~a~~~G~~~~ivvp~~~~------~~k~~~l~~~GA~Vi~~ 122 (324)
T cd01563 65 AKELGVKAVACA-STGNTSA-SLAAYAARAGIKCVVFLPAGKA------LGKLAQALAYGATVLAV 122 (324)
T ss_pred HHHcCCCEEEEe-CCCHHHH-HHHHHHHHcCCceEEEEeCCCC------HHHHHHHHHcCCEEEEE
Confidence 344566665544 3445444 4556777788888887766542 12244455566776643
No 115
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=36.51 E-value=86 Score=24.20 Aligned_cols=40 Identities=13% Similarity=0.325 Sum_probs=32.9
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
-||+.|+=.-+++....+.+...+.+..+++.|++++.+.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaT 43 (230)
T PRK01158 4 KAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILAT 43 (230)
T ss_pred eEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEc
Confidence 4889999999987665677777888888999999988775
No 116
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=36.49 E-value=69 Score=25.84 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=34.2
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
.-||++|+=.-+++....+.+...+.++.+++.|++++.+.-
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTg 45 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTS 45 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 348999999999876556677788899999999998888753
No 117
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=36.19 E-value=1.8e+02 Score=21.46 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=42.7
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCC-HHHHHHHHHHHhhc-ceEEeeHHHHHHhhc
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSD-LELHEATLKNLAYG-FAYLFDCERLEAGLF 199 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~-~~~h~~al~~l~~~-~~~v~~~~e~~~~l~ 199 (201)
+|++.++....=+-+.+|.+...|++.+++.+.+.... +...+.++..+... .....+.++.++.|+
T Consensus 3 ~vvL~~v~dP~NlG~iiRta~afGv~~vi~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~l~~l~ 71 (153)
T TIGR00185 3 NIVLYEPEIPPNTGNIARTCAATGTRLHLIEPLGFFLDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEK 71 (153)
T ss_pred EEEEcCCCCCChHHHHHHHHHHhCCEEEEECCCCCCCccHHHHhhccchHhcCCeEEeCCHHHHHHhCc
Confidence 57888888888888999999999999888865544432 33333444333211 123356677766664
No 118
>PTZ00174 phosphomannomutase; Provisional
Probab=35.86 E-value=80 Score=25.11 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=34.4
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.-||++||=.-++.....+-+...+.+..+++.|+.++.+.
T Consensus 5 ~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaT 45 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVG 45 (247)
T ss_pred CeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 45999999999998766777778888999999999877774
No 119
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.85 E-value=65 Score=22.36 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
--+.+.++++.+|++|.+||.+...+.
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 356778888889999999999986644
No 120
>PRK05854 short chain dehydrogenase; Provisional
Probab=35.76 E-value=1.6e+02 Score=24.26 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=15.7
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|... .--.++|+.+.++|++|+++
T Consensus 15 k~~lITGas~-GIG~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGASD-GLGLGLARRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 4555555543 33345555555566665554
No 121
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=35.60 E-value=2.1e+02 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=12.7
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEE
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~v 161 (201)
++++|+|. +..=-.+.++.+..+|++|++
T Consensus 7 ~~~lItG~-s~~iG~~la~~l~~~g~~v~~ 35 (247)
T PRK12935 7 KVAIVTGG-AKGIGKAITVALAQEGAKVVI 35 (247)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEE
Confidence 34555553 233333444444445555443
No 122
>PTZ00256 glutathione peroxidase; Provisional
Probab=35.60 E-value=1.2e+02 Score=22.81 Aligned_cols=41 Identities=2% Similarity=0.101 Sum_probs=34.5
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
+..+|++. ...||++...-++.++++.+..+..|+.||.+.
T Consensus 41 k~vvlv~n-~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 41 KKAIIVVN-VACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CcEEEEEE-ECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 45677777 588999888889999999999999999888875
No 123
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=35.59 E-value=1.2e+02 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=28.7
Q ss_pred chHHHHHh-CCCcEEEEeeccCchhHHHHHHHHHhC----CCeEEEe
Q 028963 121 RLQERLVG-MGVEEVIVCGVMTNLCCETTARDAFVR----GFRVFFS 162 (201)
Q Consensus 121 ~L~~~L~~-~gi~~lvi~G~~T~~CV~~Ta~~a~~~----G~~v~vv 162 (201)
++.+.+++ .++++|++.|+-.+.--...+.+++.. +.+++++
T Consensus 9 ~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~ 55 (158)
T cd05015 9 EFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFV 55 (158)
T ss_pred HHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEE
Confidence 34555666 589999999998888866666666543 5555554
No 124
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=35.58 E-value=1.6e+02 Score=25.88 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=52.9
Q ss_pred chHHHHHhCCCcEEEE---eeccCchhHHHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 121 RLQERLVGMGVEEVIV---CGVMTNLCCETTARDAFV-RGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi---~G~~T~~CV~~Ta~~a~~-~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
++...|.+.|++.|-| +|+.|..-....+..+-+ .+..|.+-.-|+++...-.+-++++ .|+..+++
T Consensus 160 ~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvE----AGvD~iDT 230 (472)
T COG5016 160 ELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVE----AGVDGIDT 230 (472)
T ss_pred HHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHH----hCcchhhh
Confidence 6777888899999976 899999999999998876 4899999999999988766655554 34544443
No 125
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=35.53 E-value=1.3e+02 Score=25.54 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=40.8
Q ss_pred CchHHHHHhCCCcEEEEeeccCchh-HHHHHHHHH-hCCCeEEEecCCCCCCCHHHHHHHHHHHhhcc
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLC-CETTARDAF-VRGFRVFFSTDATATSDLELHEATLKNLAYGF 185 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~C-V~~Ta~~a~-~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~ 185 (201)
..|.+.|+..| +-++|+|-..... +...+.+++ +.|.++.+..+.....+.+.-+.+.+.++..+
T Consensus 12 ~~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 78 (366)
T PF00465_consen 12 EELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFG 78 (366)
T ss_dssp GGHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcC
Confidence 46667777777 6667766543333 555555554 56777777776666666666777777766543
No 126
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=35.35 E-value=2.7e+02 Score=23.70 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=53.0
Q ss_pred CCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHH---HHHHHhhcc
Q 028963 118 GNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEA---TLKNLAYGF 185 (201)
Q Consensus 118 ~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~---al~~l~~~~ 185 (201)
.+.+|.+++.+.|-.-|+=+|+++..-+..++.-..+.|-.=+++--|++++....++. ++..|+..|
T Consensus 135 ~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F 205 (347)
T COG2089 135 NDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF 205 (347)
T ss_pred cChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999988777788999886444443 344444443
No 127
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=35.32 E-value=1e+02 Score=25.57 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=27.1
Q ss_pred CccCCC--chhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 33 NHFSSI--AKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 33 ~~f~~~--~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
..|..+ ....-+++.++++.|.+.++|+|+..+.
T Consensus 130 ~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~ds 165 (292)
T PRK05654 130 FSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSAS 165 (292)
T ss_pred cccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344443 5667899999999999999999998754
No 128
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=35.21 E-value=2.1e+02 Score=24.47 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=22.3
Q ss_pred chHHHHHhCCCcEEEEeeccCch---hHHHHHHHHHhCCCeEEE
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNL---CCETTARDAFVRGFRVFF 161 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~---CV~~Ta~~a~~~G~~v~v 161 (201)
.+.+.|++.|++..++.|+..|- .|...+..+.+.++++++
T Consensus 48 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 91 (382)
T cd08187 48 RVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFIL 91 (382)
T ss_pred HHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 45556666666666666665442 333444444455565544
No 129
>PRK10358 putative rRNA methylase; Provisional
Probab=35.09 E-value=1.3e+02 Score=22.34 Aligned_cols=43 Identities=12% Similarity=0.018 Sum_probs=31.7
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHH
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHE 175 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~ 175 (201)
+|++.+..-..=+-+-+|.|...|++.+++..+|..+++..-+
T Consensus 3 ~ivL~~~~dPgNlGti~Rta~a~G~~~viv~~~~d~~~~k~~r 45 (157)
T PRK10358 3 NIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLR 45 (157)
T ss_pred EEEEeCCCCcChHHHHHHHHHHhCCEEEEECCCCCCCChHHHH
Confidence 5777777777777888888888888888887776555544333
No 130
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=35.03 E-value=59 Score=23.06 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=35.5
Q ss_pred CCeEEEEEeccCccCCC--------chhHHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 22 KSSVLLVIDMQNHFSSI--------AKPILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~--------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
.+..++|||--..+.+. .......+.++.+.+++.+.++|++.+....
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45668888877766432 2245677888888999899999999987653
No 131
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=34.94 E-value=90 Score=24.53 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.2
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
.+++|+|.+++ ...+..|+..++|||...+.+-+|.
T Consensus 116 dliiv~dp~~~------------~~AI~EA~kl~IP~IaivDTn~dp~ 151 (204)
T PRK04020 116 DVVVVTDPRGD------------AQAVKEAIEVGIPVVALCDTDNLTS 151 (204)
T ss_pred CEEEEECCccc------------HHHHHHHHHhCCCEEEEEeCCCCcc
Confidence 47899998775 3456678889999999998877653
No 132
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=34.84 E-value=2.1e+02 Score=21.98 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=25.8
Q ss_pred HhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 153 FVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 153 ~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
+..|-+|.+|.|-.++-. ....+++.+++.|++|+.
T Consensus 119 ~~~g~rVlIVDDVitTGg--S~~~~i~~l~~~Ga~V~~ 154 (187)
T PRK13810 119 LKPEDRIVMLEDVTTSGG--SVREAIEVVREAGAYIKY 154 (187)
T ss_pred CCCcCEEEEEEeccCCCh--HHHHHHHHHHHCCCEEEE
Confidence 356778999999888754 456677777777777654
No 133
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=34.74 E-value=2.3e+02 Score=23.20 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=36.0
Q ss_pred CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcc
Q 028963 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGF 185 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~ 185 (201)
..++++|+|.+..+. ...|+....+||+++++. ++.+.-+..-+.++..+
T Consensus 5 ~~~~~lITGASsGIG-~~~A~~lA~~g~~liLva-----R~~~kL~~la~~l~~~~ 54 (265)
T COG0300 5 KGKTALITGASSGIG-AELAKQLARRGYNLILVA-----RREDKLEALAKELEDKT 54 (265)
T ss_pred CCcEEEEECCCchHH-HHHHHHHHHCCCEEEEEe-----CcHHHHHHHHHHHHHhh
Confidence 457899999876654 577899999999999985 45555555555555444
No 134
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.70 E-value=36 Score=27.79 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCC--eEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHh
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGF--RVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAG 197 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~--~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~ 197 (201)
-.+-.+|+.+++++|++.|-...-=- .+-+--...|. -..+++-.... |+..-+..+..++..|..|+...|++..
T Consensus 58 g~lik~l~~~~v~~vVl~G~v~~Rp~-~~~L~~d~~~l~~lp~Iv~~~~~g-DDaLLk~vi~~~E~~GfKvigahei~~~ 135 (279)
T COG3494 58 GKLIKLLKTEGVDRVVLAGGVERRPN-FRDLRPDKIGLAVLPKIVEALIRG-DDALLKAVIDFIESRGFKVIGAHEIVPG 135 (279)
T ss_pred HHHHHHHHHcCCcEEEEecccccCcc-hhhcccccchhhHHHHHHHHhccC-cHHHHHHHHHHHHhcCcEEecHhhhhhh
Confidence 37888999999999999997542100 00000001110 02233333344 7778889999999999999999999876
Q ss_pred hc
Q 028963 198 LF 199 (201)
Q Consensus 198 l~ 199 (201)
+.
T Consensus 136 ll 137 (279)
T COG3494 136 LL 137 (279)
T ss_pred hc
Confidence 53
No 135
>PRK12289 GTPase RsgA; Reviewed
Probab=34.69 E-value=2.2e+02 Score=24.29 Aligned_cols=103 Identities=10% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCeEEEEEeccC-ccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccC
Q 028963 22 KSSVLLVIDMQN-HFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKG 100 (201)
Q Consensus 22 ~~~aLlviD~Q~-~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~ 100 (201)
.+.+|+|+|+.+ .|. ...+.+.+..+...+.|+|.+-.--.-... ....++...+..
T Consensus 90 vD~vLlV~d~~~p~~~------~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~----------------~~~~~~~~~~~~ 147 (352)
T PRK12289 90 ADQILLVFALAEPPLD------PWQLSRFLVKAESTGLEIVLCLNKADLVSP----------------TEQQQWQDRLQQ 147 (352)
T ss_pred CCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCCEEEEEEchhcCCh----------------HHHHHHHHHHHh
Confidence 456888888753 211 124456666667788888877532211000 000011112222
Q ss_pred CCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHh
Q 028963 101 LVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFV 154 (201)
Q Consensus 101 ~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~ 154 (201)
...+ ++ ..|+..+.++.+++....-+.++|+|.+-- =.+|-+-++-
T Consensus 148 --~g~~-v~---~iSA~tg~GI~eL~~~L~~ki~v~iG~SgV--GKSSLIN~L~ 193 (352)
T PRK12289 148 --WGYQ-PL---FISVETGIGLEALLEQLRNKITVVAGPSGV--GKSSLINRLI 193 (352)
T ss_pred --cCCe-EE---EEEcCCCCCHHHHhhhhccceEEEEeCCCC--CHHHHHHHHc
Confidence 1222 22 236666677777766655566888887643 3466665554
No 136
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=34.64 E-value=80 Score=24.27 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=32.9
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
+|+.||=.-+++....+-+...+.++.+++.|.+++.+.-
T Consensus 3 ~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TG 42 (215)
T TIGR01487 3 LVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTG 42 (215)
T ss_pred EEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcC
Confidence 7888999888876666777888888899999998888753
No 137
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.51 E-value=1.5e+02 Score=24.78 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=34.5
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhh
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAY 183 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~ 183 (201)
+.++|+|... .=-..||+.+..+|.+|++.. ++.+..+.+.+.+..
T Consensus 36 ~~~vVTGans-GIG~eta~~La~~Ga~Vv~~~-----R~~~~~~~~~~~i~~ 81 (314)
T KOG1208|consen 36 KVALVTGATS-GIGFETARELALRGAHVVLAC-----RNEERGEEAKEQIQK 81 (314)
T ss_pred cEEEEECCCC-chHHHHHHHHHhCCCEEEEEe-----CCHHHHHHHHHHHHh
Confidence 7899999887 666789999999999888753 344555566666554
No 138
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=34.49 E-value=84 Score=26.86 Aligned_cols=44 Identities=5% Similarity=0.024 Sum_probs=35.3
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
..++++||-+|+|-. -.....+...++.||++|+-++.+++.+.
T Consensus 73 ~~a~a~vDg~~g~G~--~a~~~Am~~aiekA~~~Gi~~v~vrnS~H 116 (349)
T PRK15025 73 GPCSAILHADNAAGQ--VAAKMGMEHAIETAKQNGVAVVGISRMGH 116 (349)
T ss_pred cCcEEEEECCCCchH--HHHHHHHHHHHHHHHHhCEEEEEEeCCCc
Confidence 468889999998743 22456778899999999999999987665
No 139
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=34.30 E-value=2.1e+02 Score=22.43 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=26.6
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
..|++.-..|.+ .+.+..+...|++++++.+.-.+ ..-++.|+..|++|+..
T Consensus 51 ~~vv~~ssGN~g-~alA~~a~~~g~~~~v~~p~~~~------~~~~~~~~~~Ga~v~~~ 102 (244)
T cd00640 51 GVIIESTGGNTG-IALAAAAARLGLKCTIVMPEGAS------PEKVAQMRALGAEVVLV 102 (244)
T ss_pred CEEEEeCCcHHH-HHHHHHHHHcCCCEEEEECCCCC------HHHHHHHHHCCCEEEEE
Confidence 344444334444 45555555577777766665431 23344444555665543
No 140
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=34.23 E-value=2.7e+02 Score=24.09 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=24.1
Q ss_pred chHHHHHhCCCcEEEEeeccCc---hhHHHHHHHHHhCCCeEEEe
Q 028963 121 RLQERLVGMGVEEVIVCGVMTN---LCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~---~CV~~Ta~~a~~~G~~v~vv 162 (201)
.+.+.|++.|++-.++.|+.-| ..|...+..+.+.+.+++|-
T Consensus 68 ~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 68 GLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred HHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 4666677777766555555433 23334444455667776663
No 141
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=34.04 E-value=76 Score=22.14 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=17.0
Q ss_pred EEEeeccCchhHHHHHHHHHhCCCeEEEecC
Q 028963 134 VIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164 (201)
Q Consensus 134 lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~D 164 (201)
|++.|-.-+..+...+..+.+.||+|.++.=
T Consensus 2 Il~i~~~~~~~~~~~~~~L~~~g~~V~ii~~ 32 (139)
T PF13477_consen 2 ILLIGNTPSTFIYNLAKELKKRGYDVHIITP 32 (139)
T ss_pred EEEEecCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 3344444444555556666666666666654
No 142
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.01 E-value=2.3e+02 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=16.3
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|..... =...++.+.+.|++|+++
T Consensus 11 k~vlItGa~g~i-G~~ia~~l~~~G~~V~~~ 40 (255)
T PRK07523 11 RRALVTGSSQGI-GYALAEGLAQAGAEVILN 40 (255)
T ss_pred CEEEEECCcchH-HHHHHHHHHHcCCEEEEE
Confidence 466666654332 334455556667766543
No 143
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=33.92 E-value=2.8e+02 Score=23.70 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=8.7
Q ss_pred hHHHHHhCCCcEEEEeecc
Q 028963 122 LQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~ 140 (201)
+.+.|++.|++..++.|+.
T Consensus 48 v~~~L~~~~~~~~~~~~v~ 66 (377)
T cd08188 48 VIESLEEAGLEYVVFSDVS 66 (377)
T ss_pred HHHHHHHcCCeEEEeCCCC
Confidence 4444444455444444443
No 144
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=33.90 E-value=2.3e+02 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=14.9
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|.... =-...++.+.++|++|+++
T Consensus 8 ~~vlItGasg~-iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 8 KTAVVTGAASG-IGKEIALELARAGAAVAIA 37 (262)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCCeEEEE
Confidence 45555555542 2234455555566655543
No 145
>PLN03006 carbonate dehydratase
Probab=33.85 E-value=1.7e+02 Score=24.50 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=40.4
Q ss_pred CCCCccccccccCCCCCCCEEEECCCCCCCCC---------CchHHHHHhCCCcEEEEeeccCchhHHHH
Q 028963 88 GTADAELLPEIKGLVAGADEVIEKNTYSAFGN---------TRLQERLVGMGVEEVIVCGVMTNLCCETT 148 (201)
Q Consensus 88 g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~---------t~L~~~L~~~gi~~lvi~G~~T~~CV~~T 148 (201)
+--...+.|++---..++|..+.++-.|.... ..|+-.+...++++|+|+|=.-...|.+.
T Consensus 119 ~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 188 (301)
T PLN03006 119 ACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL 188 (301)
T ss_pred EeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence 33344555544322268898888885555421 25777777899999999998877766643
No 146
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=33.79 E-value=3.2e+02 Score=23.80 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=41.9
Q ss_pred EEEEeec-----cCchhHHHH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 133 EVIVCGV-----MTNLCCETT-ARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 133 ~lvi~G~-----~T~~CV~~T-a~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
+|.++|. --..+|..+ +..+...|++|.++.--.-...++..+.+-+.....|+.+.-++++.+++.
T Consensus 189 kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~ 261 (395)
T PRK07200 189 KIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFK 261 (395)
T ss_pred EEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhC
Confidence 7888885 223455555 555567899999988755444566556555555556666655555555443
No 147
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=33.73 E-value=1e+02 Score=22.68 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=33.5
Q ss_pred CCchHHHHHhCCCcEEEEeeccCchh--HHHHHHHHHhCCCeEEEecCCC
Q 028963 119 NTRLQERLVGMGVEEVIVCGVMTNLC--CETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G~~T~~C--V~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
..++.+.|+ ..++|-++|++-+=- -.-.+..+.++||+|+-|-=-.
T Consensus 6 ~~~i~~iL~--~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~ 53 (140)
T COG1832 6 EEDIAEILK--SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKL 53 (140)
T ss_pred HHHHHHHHH--hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCccc
Confidence 346677776 577999999986533 2345677889999999886633
No 148
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=33.71 E-value=1.1e+02 Score=23.93 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=35.8
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEe-cCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFS-TDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv-~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
.|...|.+.| .+||+|.+.- |-....+.+.+.|-+++.| .......-+..|..-.+.+...++-++|.
T Consensus 65 ~l~~~l~~~g--~~vvSGlA~G-iD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe 133 (212)
T PF02481_consen 65 KLARELAKAG--IVVVSGLAKG-IDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISE 133 (212)
T ss_dssp HHHHHHHHHT---EEEE---TT-HHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-
T ss_pred HHHHHHhhCC--EEEEcCCCCC-HHHHHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeC
Confidence 4556666655 5899998865 5555667777876555544 44443344566666677776555666664
No 149
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.62 E-value=2.5e+02 Score=22.50 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEEe
Q 028963 43 LDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.+...++++.-.+.|++.|=+.
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iE~g 40 (259)
T cd07939 19 REEKLAIARALDEAGVDEIEVG 40 (259)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe
Confidence 4455556666666788887774
No 150
>PRK08862 short chain dehydrogenase; Provisional
Probab=33.24 E-value=2.3e+02 Score=21.98 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=15.9
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|... .--.+.++...++|++|+++
T Consensus 6 k~~lVtGas~-GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILITSAGS-VLGRTISCHFARLGATLILC 35 (227)
T ss_pred eEEEEECCcc-HHHHHHHHHHHHCCCEEEEE
Confidence 3555555554 23445555555666665543
No 151
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=33.23 E-value=2.9e+02 Score=24.03 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=17.4
Q ss_pred hHHHHHhCCCcEEEEeeccCc---hhHHHHHHHHHhCCCeEEE
Q 028963 122 LQERLVGMGVEEVIVCGVMTN---LCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~T~---~CV~~Ta~~a~~~G~~v~v 161 (201)
+.+.|++.|++-.++.|+..+ -.|..-+..+.+.+.+++|
T Consensus 43 v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 85 (414)
T cd08190 43 VLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFV 85 (414)
T ss_pred HHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 444455555555555444433 2222333333444554443
No 152
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.03 E-value=1.4e+02 Score=21.31 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=33.7
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
.++.+.+...+++.++|+.-.+|..-. +..+.++|.+|+++.-.
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~~--i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVPL--VERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHHH--HHHHHHcCCEEEEEccC
Confidence 345566666789999999888887654 56677779999999876
No 153
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=33.01 E-value=1.2e+02 Score=25.05 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=27.2
Q ss_pred CccCCC--chhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 33 NHFSSI--AKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 33 ~~f~~~--~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
..|..+ .....+++.++++.|.+.++|+|+..+.
T Consensus 129 ~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dS 164 (285)
T TIGR00515 129 FAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSAS 164 (285)
T ss_pred ccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344443 5668999999999999999999998654
No 154
>PLN02887 hydrolase family protein
Probab=32.95 E-value=90 Score=28.66 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=34.5
Q ss_pred eEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 24 SVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.-||++||=.-+++....+-+...+.++.+++.|+.++.+.
T Consensus 308 iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIAT 348 (580)
T PLN02887 308 FSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIAT 348 (580)
T ss_pred ccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEc
Confidence 45999999999987666677788889999999999888875
No 155
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=32.81 E-value=1.5e+02 Score=22.78 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHhCCCeEEEecCC----CCCCC----HHHHHHHHHHHhhcceE
Q 028963 151 DAFVRGFRVFFSTDA----TATSD----LELHEATLKNLAYGFAY 187 (201)
Q Consensus 151 ~a~~~G~~v~vv~Da----~~~~~----~~~h~~al~~l~~~~~~ 187 (201)
...+.||+++|+++= .+.++ ...|+.++..++..++.
T Consensus 42 ~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~ 86 (181)
T COG0241 42 KLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK 86 (181)
T ss_pred HHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc
Confidence 344889999999983 33344 45688888888887764
No 156
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=32.80 E-value=1.2e+02 Score=25.35 Aligned_cols=28 Identities=7% Similarity=0.194 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 39 AKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 39 ~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
+...-+++.++++.|.+.++|+|...+.
T Consensus 150 G~v~geKi~ra~e~A~~~rlPlV~l~~S 177 (296)
T CHL00174 150 GSVVGEKITRLIEYATNESLPLIIVCAS 177 (296)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 5678999999999999999999998643
No 157
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=32.74 E-value=2.9e+02 Score=23.40 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=56.8
Q ss_pred CCccccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC---C--cEEEEeeccCchhHHHHHHHHHhCCCeEE
Q 028963 90 ADAELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG---V--EEVIVCGVMTNLCCETTARDAFVRGFRVF 160 (201)
Q Consensus 90 ~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g---i--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~ 160 (201)
...+.+.+++. ...-+||.-.. +..+.| ++--+.+..| + .+|.++|--.+.-+.+.+..+...|.+++
T Consensus 109 ~~~~~~~~~a~--~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~ 185 (334)
T PRK12562 109 HGQEVVETLAE--YAGVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLR 185 (334)
T ss_pred CchHHHHHHHH--hCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEE
Confidence 34455666666 45566676532 333333 2322333332 3 48888886544434455666677899999
Q ss_pred EecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 161 FSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 161 vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
++.--.--..++..+.+-...+..++.+.-++++.+++
T Consensus 186 ~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK12562 186 LVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGV 223 (334)
T ss_pred EECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 98764444444444444333344455555555554444
No 158
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=32.71 E-value=1.9e+02 Score=20.71 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=34.9
Q ss_pred chHHHHHhCCCcEEEEeecc-CchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHh
Q 028963 121 RLQERLVGMGVEEVIVCGVM-TNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~-T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~ 182 (201)
.+...|.++|..+|++++-. ..--...........|.++.++. |.-.+++..+..++.+.
T Consensus 15 ~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~--~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 15 ALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE--CDLSDPESIRALIEEVI 75 (167)
T ss_dssp HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE--SETTSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCceEEEEeeeccccccccccccccccccccccccc--ccccccccccccccccc
Confidence 45556666677777777776 22223333333445666666666 44446666666666666
No 159
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=32.68 E-value=60 Score=27.73 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=55.2
Q ss_pred CCEEEECCCCCCCCCCchHHHHHhCCCc------EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHH
Q 028963 105 ADEVIEKNTYSAFGNTRLQERLVGMGVE------EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATL 178 (201)
Q Consensus 105 ~~~vv~K~~~saf~~t~L~~~L~~~gi~------~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al 178 (201)
.|..+. +-|..| ..+.++|++.-.| ++.+-=++.+-=|...-..|.+.|-+|+|+-+.=+-+|++.--.--
T Consensus 9 ~DiLlh-~PY~sf--~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~Ni~Wa 85 (352)
T PF13090_consen 9 KDILLH-HPYESF--DPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLVELKARFDEENNIHWA 85 (352)
T ss_dssp S-EEEE-CTTB-T--CHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCCCCCC
T ss_pred CCEEEE-CCcccc--HHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEEEEeccccHHHHhHHH
Confidence 454444 456667 3566788875443 4556677888889999999999999999999999999876544444
Q ss_pred HHHhhcceEEe
Q 028963 179 KNLAYGFAYLF 189 (201)
Q Consensus 179 ~~l~~~~~~v~ 189 (201)
+.|+..|+.|+
T Consensus 86 ~~Le~aGv~Vi 96 (352)
T PF13090_consen 86 KRLEEAGVHVI 96 (352)
T ss_dssp HHHHHCT-EEE
T ss_pred hhHHhcCeEEE
Confidence 56677788776
No 160
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=32.38 E-value=69 Score=25.49 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=29.2
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
||++|+=.-++......++...+.++.+++.|++++++.
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~T 39 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCT 39 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEc
Confidence 577888777776544344556788888999999988884
No 161
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=32.17 E-value=1e+02 Score=26.10 Aligned_cols=45 Identities=4% Similarity=0.011 Sum_probs=35.8
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec-ccC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH-CHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~-~~~ 68 (201)
...+++++|-+++|-. -.....+...++.||++|+-++.++. .+.
T Consensus 61 ~~~a~a~vDg~~g~G~--~~~~~am~~aiekAr~~Gi~~v~vrn~S~H 106 (330)
T PLN00105 61 ETKTSAAVDGNKNAGM--LVLHHAMDMAIDKAKTHGVGIVGTCNTSTS 106 (330)
T ss_pred cCCcEEEEECCCCccH--HHHHHHHHHHHHHHHHhCEEEEEEeCCcCC
Confidence 4568999999998853 23466778899999999999999998 543
No 162
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=32.17 E-value=2.8e+02 Score=23.43 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=56.7
Q ss_pred CccccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC--C--cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 91 DAELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG--V--EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 91 g~~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g--i--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
..+.+.++.. ...-+||.-.. +..+.| +|--+.+..| + .+|.++|--.+.-+.+-+..+...|+++.++
T Consensus 111 ~~~~~~~~a~--~~~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~ 187 (334)
T PRK01713 111 KQSIVNELAE--YAGVPVFNGLT-DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRIC 187 (334)
T ss_pred chHHHHHHHH--hCCCCEEECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEE
Confidence 3344555655 34556666533 334333 3333333333 2 4788889765554444566677789999998
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 163 TDATATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 163 ~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
.--.--..++..+.+-+..+..|+.+.-++++-+++
T Consensus 188 ~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK01713 188 APKALLPEASLVEMCEKFAKESGARITVTDDIDKAV 223 (334)
T ss_pred CCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 765444444444434333344455555455554443
No 163
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=32.16 E-value=3.2e+02 Score=23.21 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=8.8
Q ss_pred hHHHHHhCCCcEEEEeecc
Q 028963 122 LQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~ 140 (201)
+.+.|++.|++-.++.|+.
T Consensus 44 v~~~L~~~g~~~~~~~~v~ 62 (370)
T cd08192 44 VLALLEDAGLAAALFDEVP 62 (370)
T ss_pred HHHHHHHcCCeEEEeCCCC
Confidence 4444444555444444443
No 164
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.15 E-value=1.1e+02 Score=24.90 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=40.5
Q ss_pred CCCEEEECCCCCCCCCCchHHHHHhCCC-cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 104 GADEVIEKNTYSAFGNTRLQERLVGMGV-EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 104 ~~~~vv~K~~~saf~~t~L~~~L~~~gi-~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.++.++. || .++-+..+|...+. .+|+++--.-..=-..++..+.+.|.+++++.|+..+
T Consensus 86 ~~dvILT---~s--~S~~v~~~l~~~~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~ 146 (253)
T PRK06372 86 NDSVIGT---IS--SSQVLKAFISSSEKIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMC 146 (253)
T ss_pred CCCEEEE---eC--CcHHHHHHHHhcCCCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHH
Confidence 3455544 33 24567777755444 5777776554433368999999999999999998644
No 165
>PRK08703 short chain dehydrogenase; Provisional
Probab=32.03 E-value=2.1e+02 Score=21.98 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=7.8
Q ss_pred CCCCCchHHHHHhCCC
Q 028963 116 AFGNTRLQERLVGMGV 131 (201)
Q Consensus 116 af~~t~L~~~L~~~gi 131 (201)
.+-+..+...|.++|.
T Consensus 16 ggiG~~la~~l~~~g~ 31 (239)
T PRK08703 16 QGLGEQVAKAYAAAGA 31 (239)
T ss_pred CcHHHHHHHHHHHcCC
Confidence 3334455555555554
No 166
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=31.97 E-value=75 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=31.6
Q ss_pred eEEEEEeccCccCCC----c-------hhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 24 SVLLVIDMQNHFSSI----A-------KPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 24 ~aLlviD~Q~~f~~~----~-------~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
.-+||||-...+... . ..+..-+..|...|++++++||++.+...
T Consensus 104 ~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~ 159 (218)
T cd01394 104 VDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYS 159 (218)
T ss_pred CcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEE
Confidence 569999998877421 1 12333345566788999999999988754
No 167
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=31.95 E-value=49 Score=27.88 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=33.2
Q ss_pred HHHHHhCCCcEEEEeec--------------cCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 123 QERLVGMGVEEVIVCGV--------------MTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~--------------~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.+.+.+.||+.|+|.|+ .-+..|..+++...+.--++.|+.|.|-+
T Consensus 63 v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc 122 (324)
T PF00490_consen 63 VEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLC 122 (324)
T ss_dssp HHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-ST
T ss_pred HHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccc
Confidence 34456799999999999 46677888877777766689999998854
No 168
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=31.93 E-value=3e+02 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=10.4
Q ss_pred chHHHHHhCCCcEEEEeecc
Q 028963 121 RLQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~ 140 (201)
.+...|++.|++-.++.|+.
T Consensus 48 ~v~~~L~~~~i~~~~~~~v~ 67 (379)
T TIGR02638 48 KVTDLLDEAGIAYELFDEVK 67 (379)
T ss_pred HHHHHHHHCCCeEEEECCCC
Confidence 34455555566555554554
No 169
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=31.85 E-value=98 Score=24.49 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=33.4
Q ss_pred EEEEEeccCccCC---CchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 25 VLLVIDMQNHFSS---IAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 25 aLlviD~Q~~f~~---~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
-||+.||=.-+++ ....+.+....+++..+++|++++++.
T Consensus 2 ~li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aT 44 (249)
T TIGR01485 2 LLLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYST 44 (249)
T ss_pred eEEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEc
Confidence 3788999999986 456788999999999999998777775
No 170
>PRK07109 short chain dehydrogenase; Provisional
Probab=31.76 E-value=2.4e+02 Score=23.47 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=7.3
Q ss_pred CCCCchHHHHHhCCC
Q 028963 117 FGNTRLQERLVGMGV 131 (201)
Q Consensus 117 f~~t~L~~~L~~~gi 131 (201)
+-+..+.+.|.++|.
T Consensus 19 gIG~~la~~la~~G~ 33 (334)
T PRK07109 19 GVGRATARAFARRGA 33 (334)
T ss_pred HHHHHHHHHHHHCCC
Confidence 334455555555554
No 171
>PRK08589 short chain dehydrogenase; Validated
Probab=31.72 E-value=2.3e+02 Score=22.55 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=13.6
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+++|+|..... -.+.++...++|++|+++
T Consensus 8 ~vlItGas~gI-G~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 8 VAVITGASTGI-GQASAIALAQEGAYVLAV 36 (272)
T ss_pred EEEEECCCchH-HHHHHHHHHHCCCEEEEE
Confidence 45555544432 234444445555555544
No 172
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=31.58 E-value=1.3e+02 Score=24.54 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=28.9
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
..+++|+|.+.+. .++..|+..|+|||-..+...+|.
T Consensus 158 Pd~iii~d~~~~~------------~ai~Ea~kl~IPiIaivDTn~dp~ 194 (258)
T PRK05299 158 PDALFVVDPNKEH------------IAVKEARKLGIPVVAIVDTNCDPD 194 (258)
T ss_pred CCEEEEeCCCccH------------HHHHHHHHhCCCEEEEeeCCCCCc
Confidence 4589999988753 356778889999999998876553
No 173
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.50 E-value=57 Score=27.66 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=60.8
Q ss_pred cccCCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHH---HHHHHhCCCeEEE
Q 028963 85 VYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETT---ARDAFVRGFRVFF 161 (201)
Q Consensus 85 ~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~T---a~~a~~~G~~v~v 161 (201)
...|.||....+-.+.+ -..-.++++.---+..-.++.+.|..+.++-+.|+=..|.-.|++- .+....+-|...+
T Consensus 98 ~~~G~wg~ra~D~~~r~-ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~ll 176 (385)
T KOG2862|consen 98 VSTGTWGQRAADCARRY-GAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALL 176 (385)
T ss_pred EEechHHHHHHHHHHhh-CceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEE
Confidence 35577777776666653 2233344443333333356777888899999999999999999865 5567778999999
Q ss_pred ecCCCCCCC
Q 028963 162 STDATATSD 170 (201)
Q Consensus 162 v~Da~~~~~ 170 (201)
+.|.++|..
T Consensus 177 lVD~VaSlg 185 (385)
T KOG2862|consen 177 LVDTVASLG 185 (385)
T ss_pred EEechhhcC
Confidence 999999974
No 174
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=31.47 E-value=3.2e+02 Score=23.11 Aligned_cols=105 Identities=11% Similarity=-0.021 Sum_probs=56.6
Q ss_pred CCccccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHh-CC---CcEEEEeeccCchhHHHHHHHHHhCCCeEEE
Q 028963 90 ADAELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVG-MG---VEEVIVCGVMTNLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 90 ~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~-~g---i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~v 161 (201)
...+.+.++.. ...-+||.-.. +..+.| ++--+.+. .| -.+|.++|--.+.-+.+.+..+...|+++.+
T Consensus 109 ~~~~~~~~~a~--~s~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~ 185 (332)
T PRK04284 109 FSQRTVETLAE--YSGVPVWNGLT-DEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHL 185 (332)
T ss_pred CchHHHHHHHH--hCCCCEEECCC-CCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEE
Confidence 34445566665 44556776432 333332 23333333 23 3588899975444444556667778999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHh
Q 028963 162 STDATATSDLELHEATLKNLAYGFAYLFDCERLEAG 197 (201)
Q Consensus 162 v~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~ 197 (201)
+.--.--..++..+.+-+.....|+.+.-+.++-++
T Consensus 186 ~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea 221 (332)
T PRK04284 186 VCPKELNPDDELLNKCKEIAAETGGKITITDDIDEG 221 (332)
T ss_pred ECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH
Confidence 887555555555444433334455555444444333
No 175
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.42 E-value=65 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=28.9
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCC
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSD 170 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~ 170 (201)
+|.|+|-+- +-=..|++.+.+.||+|+|+-++|.+..
T Consensus 2 ~iLVtGGAG-YIGSHtv~~Ll~~G~~vvV~DNL~~g~~ 38 (329)
T COG1087 2 KVLVTGGAG-YIGSHTVRQLLKTGHEVVVLDNLSNGHK 38 (329)
T ss_pred eEEEecCcc-hhHHHHHHHHHHCCCeEEEEecCCCCCH
Confidence 466666543 3445889999999999999999998853
No 176
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.41 E-value=91 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=32.2
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
..=.||+|+|.-=++ .-..+..+..++++|.++|+++|..-.
T Consensus 78 ~vDvlvfDiQDvG~R-~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 78 GVDVLVFDIQDVGVR-FYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred CCCEEEEeCccCCch-HHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 345799999985332 334689999999999999999887643
No 177
>PLN02618 tryptophan synthase, beta chain
Probab=31.32 E-value=2.6e+02 Score=24.43 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=39.9
Q ss_pred HhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 127 VGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 127 ~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
++.|.+++|+.--+-+.|+ ++|..+...|++++|+..... .+.....+..|+..|++|+..
T Consensus 115 ~~~g~~~vIaesgaGNhG~-AlA~aaa~~Gl~~~I~m~~~~---~~~~~~nv~~mr~lGA~Vi~v 175 (410)
T PLN02618 115 KRLGKKRIIAETGAGQHGV-ATATVCARFGLECIVYMGAQD---MERQALNVFRMRLLGAEVRPV 175 (410)
T ss_pred HHcCCCEEEEEcCcHHHHH-HHHHHHHHcCCcEEEEEcCCc---hhhhhhhHHHHHHCCCEEEEE
Confidence 3567777776543455554 556677889999888877632 233444556778888887655
No 178
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=31.30 E-value=74 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.7
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
+|+|+|. -..-++||..+.++||+|++.+-.-
T Consensus 2 rVai~Ga--G~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 2 RVAIAGA--GLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred eEEEEcc--cHHHHHHHHHHHhCCCceEEEeccC
Confidence 5677764 4567899999999999999998653
No 179
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=30.72 E-value=2.4e+02 Score=21.92 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=15.7
Q ss_pred CCCCCCCCchHHHHHhCCCcEEEEeecc
Q 028963 113 TYSAFGNTRLQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 113 ~~saf~~t~L~~~L~~~gi~~lvi~G~~ 140 (201)
+-+.+-+..+...|.++|. +|++++-.
T Consensus 18 Gas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 18 GSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 3444555666666766665 45555544
No 180
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=30.49 E-value=3.4e+02 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=11.7
Q ss_pred CCCeEEEecCCCCCCCHHHHHHHHHHHh
Q 028963 155 RGFRVFFSTDATATSDLELHEATLKNLA 182 (201)
Q Consensus 155 ~G~~v~vv~Da~~~~~~~~h~~al~~l~ 182 (201)
+|+++.+..+.....+.+.-+.+++.++
T Consensus 50 ~~~~~~~~~~~~~~p~~~~v~~~~~~~~ 77 (370)
T cd08551 50 AGIEVVIFDGVEPNPTLSNVDAAVAAYR 77 (370)
T ss_pred cCCeEEEECCCCCCCCHHHHHHHHHHHH
Confidence 3444444444333334444444444443
No 181
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.49 E-value=1.8e+02 Score=19.74 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=46.0
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceE
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAY 187 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~ 187 (201)
+++++.|...+++-++|+.-. ..=...++.+.++|.+|++=.-.+. +.+..+..++..+..+..
T Consensus 52 ~~~~~ll~~~~~D~V~I~tp~--~~h~~~~~~~l~~g~~v~~EKP~~~--~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 52 TDLEELLADEDVDAVIIATPP--SSHAEIAKKALEAGKHVLVEKPLAL--TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SSHHHHHHHTTESEEEEESSG--GGHHHHHHHHHHTTSEEEEESSSSS--SHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHhhcCCEEEEecCC--cchHHHHHHHHHcCCEEEEEcCCcC--CHHHHHHHHHHHHHhCCE
Confidence 568999999999999998766 4467888999999996665544444 455566666665555443
No 182
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=30.45 E-value=1.2e+02 Score=23.86 Aligned_cols=56 Identities=21% Similarity=0.107 Sum_probs=28.0
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
+.+||+-.....--+.|++.|.+.|-+|+++.....+. ..+-..+.++ .|+.++++
T Consensus 157 ~~~vvvea~~~sGt~~ta~~A~~~gr~v~~vp~~~~~~---~~~G~~~Li~-~GA~~v~~ 212 (212)
T PF02481_consen 157 DAVVVVEAGEKSGTLHTARFALEQGRPVFAVPGPIDDP---NSEGNNELIK-EGAKLVTS 212 (212)
T ss_dssp S-EEE----TT-THHHHHHHHHHHT--EEE----TT-G---GGHHHHHHHH-TT-EE-S-
T ss_pred CeEEEEecCCCChHHHHHHHHHHcCCeEEEEeCCCCCc---ccHHHHHHHH-cCCEeeeC
Confidence 56778887888899999999999999999985554432 2233333333 45887764
No 183
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=30.34 E-value=2e+02 Score=25.18 Aligned_cols=65 Identities=5% Similarity=-0.174 Sum_probs=41.5
Q ss_pred HHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 124 ERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 124 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
.+.++.|.+++++..-+-+.| .+.|..+...|++++|+-...+..... .-...|+..|++|+.+.
T Consensus 110 ~~a~~~G~~~~vtetssGN~G-~alA~aaa~~Gl~~~V~mp~~s~~~k~---~k~~~m~~~GA~Vi~~~ 174 (419)
T TIGR01415 110 YYAKIEGAKRLVTETGAGQWG-SALSLAGALFGLECKVFMVRVSFNQKP---YRKYLMELYGAEVIPSP 174 (419)
T ss_pred HHHHHcCCCeEEEecCchHHH-HHHHHHHHHcCCcEEEEEeCCCcccCH---HHHHHHHHcCCEEEEEC
Confidence 344678999888753334544 566777888999988877654322111 22356667888887553
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=30.25 E-value=1.9e+02 Score=23.54 Aligned_cols=55 Identities=5% Similarity=-0.024 Sum_probs=43.6
Q ss_pred ECCCCCCCCCCchHHHHHhCCCcEEEEee-------ccCchhHHHHHHHHHhCCCeEEEecC
Q 028963 110 EKNTYSAFGNTRLQERLVGMGVEEVIVCG-------VMTNLCCETTARDAFVRGFRVFFSTD 164 (201)
Q Consensus 110 ~K~~~saf~~t~L~~~L~~~gi~~lvi~G-------~~T~~CV~~Ta~~a~~~G~~v~vv~D 164 (201)
.....++|++.--.+.|++.|++-++|.= -.|+..|..-+..|++.|..+++.-.
T Consensus 65 ~~~~~Ga~TGEvS~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 65 TFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred ccccCCCccCcCCHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 33466889888888999999998776531 36788999999999999999988544
No 185
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.18 E-value=3.2e+02 Score=23.50 Aligned_cols=68 Identities=18% Similarity=0.029 Sum_probs=43.0
Q ss_pred hHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC----CCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 122 LQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT----ATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~----~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
+..+|.....++++|+|---..| ..|..+.++|.+|+++...- ...+++..+...+.++..+.++...
T Consensus 128 ~~~~l~~~~~~~vvViGgG~~g~--e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 199 (427)
T TIGR03385 128 IKQYIDKNKVENVVIIGGGYIGI--EMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLN 199 (427)
T ss_pred HHHHHhhcCCCeEEEECCCHHHH--HHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 44445444557888888553332 34566677899999886432 2345666666777777777776643
No 186
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.08 E-value=86 Score=21.65 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
-+.+.+.++.++++|.+||.+.....
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45688889999999999999876543
No 187
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=30.07 E-value=1.5e+02 Score=23.54 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=28.5
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCC
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPA 71 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~ 71 (201)
..+++|+|.+++ ..++.+|...|+|+|-..+.+-+|.
T Consensus 156 Pd~vii~d~~~~------------~~ai~Ea~~l~IP~I~ivDTn~~p~ 192 (225)
T TIGR01011 156 PDLLFVIDPVKE------------KIAVAEARKLGIPVVAIVDTNCDPD 192 (225)
T ss_pred CCEEEEeCCCcc------------HHHHHHHHHcCCCEEEEeeCCCCCc
Confidence 348999998764 2356778889999999998877553
No 188
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
Probab=30.05 E-value=70 Score=26.60 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=40.8
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecC
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~D 164 (201)
..+.+.+.+.|+..+-+.|+..+-++.+=|..+...|+.+.+++.
T Consensus 99 ~~i~~~~~~~~~~~l~~~G~eadd~i~t~A~~a~~~g~~~~I~S~ 143 (310)
T COG0258 99 PILTELLVALGIPLLELMGIEADDPIETLAQKAYKKGDVVLIISG 143 (310)
T ss_pred HHHHHHHHHhCcHhhhcCCCCcchhHHHHHHHHHhcCCeEEEEeC
Confidence 467788899999999999999999999999999999999999864
No 189
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=29.96 E-value=1.7e+02 Score=21.11 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHh
Q 028963 49 TVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVG 128 (201)
Q Consensus 49 l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~ 128 (201)
+++.|+.+++||+++.......... ....+ -.+..|...++.. +.....++|.||+- +-.|...|-+
T Consensus 2 i~~~a~r~~i~vi~Van~~h~~~~~-~~~~~---i~Vd~g~DaaD~~--I~~~~~~gDiVITq-------DigLA~~~l~ 68 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYSHRLPRS-PYVEM---IVVDSGFDAADFY--IVNHAKPGDIVITQ-------DIGLASLLLA 68 (130)
T ss_pred HHHHHHHHCCEEEEEeCCCccCCCC-CCeEE---EEECCCCChHHHH--HHHcCCCCCEEEEC-------CHHHHHHHHH
Confidence 4678899999999997654422110 00000 0123333333321 11112567877763 3466666666
Q ss_pred CCCcEEEEeec
Q 028963 129 MGVEEVIVCGV 139 (201)
Q Consensus 129 ~gi~~lvi~G~ 139 (201)
+|..-|---|-
T Consensus 69 Kga~vl~~rG~ 79 (130)
T PF02639_consen 69 KGAYVLNPRGK 79 (130)
T ss_pred CCCEEECCCCC
Confidence 66554444443
No 190
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=29.92 E-value=2.6e+02 Score=21.57 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=8.6
Q ss_pred CCCCCCchHHHHHhCCC
Q 028963 115 SAFGNTRLQERLVGMGV 131 (201)
Q Consensus 115 saf~~t~L~~~L~~~gi 131 (201)
+.+-+..+..+|.++|.
T Consensus 13 sg~iG~~la~~l~~~g~ 29 (258)
T PRK12429 13 ASGIGLEIALALAKEGA 29 (258)
T ss_pred CchHHHHHHHHHHHCCC
Confidence 33444555555555554
No 191
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=29.90 E-value=1.1e+02 Score=26.37 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCeEEEEEeccCccCCC--------chhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSI--------AKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~--------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
.+.-+||||-.+.+... ...+.+-+.+|.+.+++.+++++.+.|...
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk 211 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTK 211 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccC
Confidence 35679999987655321 123445567788899999999999987655
No 192
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.85 E-value=2.5e+02 Score=23.47 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=6.3
Q ss_pred CCchHHHHHhCCC
Q 028963 119 NTRLQERLVGMGV 131 (201)
Q Consensus 119 ~t~L~~~L~~~gi 131 (201)
+..+...|.++|.
T Consensus 20 G~aia~~la~~G~ 32 (330)
T PRK06139 20 GQATAEAFARRGA 32 (330)
T ss_pred HHHHHHHHHHCCC
Confidence 3444455555554
No 193
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.79 E-value=2.7e+02 Score=21.71 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=15.7
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|... .--.+.++...++|++|+++
T Consensus 8 k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAAQ-GIGAAIARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEE
Confidence 4555666543 33345555555666665543
No 194
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=29.66 E-value=3.6e+02 Score=23.16 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=26.1
Q ss_pred chHHHHHhCCCcEEEEeecc---CchhHHHHHHHHHhCCCeEEE
Q 028963 121 RLQERLVGMGVEEVIVCGVM---TNLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~---T~~CV~~Ta~~a~~~G~~v~v 161 (201)
.+.+.|++.|++..++.|+. +.-.|..-+..+.+.+.+++|
T Consensus 50 ~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Ii 93 (383)
T PRK09860 50 DVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVI 93 (383)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEE
Confidence 56667777777777777764 334444555555566777766
No 195
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=29.59 E-value=2.5e+02 Score=21.15 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=39.8
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHH
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNL 181 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l 181 (201)
.-|..+|++.|++-..+.=+.-+.-....++...-..+++++.+=+++....+....++..+
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~ 83 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKA 83 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHH
Confidence 47889999999876554444455554444444333469999999777766555555555543
No 196
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.56 E-value=77 Score=21.54 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=49.0
Q ss_pred EEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCC---CC
Q 028963 27 LVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGL---VA 103 (201)
Q Consensus 27 lviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~---~~ 103 (201)
+++|+.--+.. ....++....++++.|+.|.|++++......+.. ++...|..+ ..
T Consensus 1 ~l~D~dGvl~~-g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~--------------------~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 1 FLFDLDGVLYN-GNEPIPGAVEALDALRERGKPVVFLTNNSSRSRE--------------------EYAKKLKKLGIPVD 59 (101)
T ss_dssp EEEESTTTSEE-TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HH--------------------HHHHHHHHTTTT--
T ss_pred CEEeCccEeEe-CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHH--------------------HHHHHHHhcCcCCC
Confidence 45666655544 3445788889999999999999999765432110 122222210 01
Q ss_pred CCCEEEECCCCCCCCCCchHHHHHh-CCCcEEEEeecc
Q 028963 104 GADEVIEKNTYSAFGNTRLQERLVG-MGVEEVIVCGVM 140 (201)
Q Consensus 104 ~~~~vv~K~~~saf~~t~L~~~L~~-~gi~~lvi~G~~ 140 (201)
+ +.++.- +.....+|++ .+.+++++.|-.
T Consensus 60 ~-~~i~ts-------~~~~~~~l~~~~~~~~v~vlG~~ 89 (101)
T PF13344_consen 60 E-DEIITS-------GMAAAEYLKEHKGGKKVYVLGSD 89 (101)
T ss_dssp G-GGEEEH-------HHHHHHHHHHHTTSSEEEEES-H
T ss_pred c-CEEECh-------HHHHHHHHHhcCCCCEEEEEcCH
Confidence 1 222221 2467788888 788999999865
No 197
>PRK07035 short chain dehydrogenase; Provisional
Probab=29.41 E-value=2.7e+02 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=16.3
Q ss_pred CCCCCCCCchHHHHHhCCCcEEEEeecc
Q 028963 113 TYSAFGNTRLQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 113 ~~saf~~t~L~~~L~~~gi~~lvi~G~~ 140 (201)
+-+.+-+..+...|.+.|. +|++++-.
T Consensus 15 Gas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 15 GASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4444555667777777775 56666543
No 198
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=29.24 E-value=2.9e+02 Score=21.81 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=41.4
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVR-GFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~-G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
.|...|.+.|+ .||+|.+. .|=....+.|.+. |..+.|+.......-+..|..-.+.+...++-++|
T Consensus 65 ~l~~~l~~~g~--~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliS 132 (220)
T TIGR00732 65 KLAEELAKNGV--TIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLS 132 (220)
T ss_pred HHHHHHHhCCC--EEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEE
Confidence 45555665654 68999865 3333444455555 56677777766655566677777777666655554
No 199
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=29.21 E-value=1.9e+02 Score=19.77 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=40.4
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceE
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAY 187 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~ 187 (201)
+++++++....++-||=| .....+..-+..++.+|.+|+...=..-+ +....+...+.-+..+..
T Consensus 49 ~~~~~~~~~~~~dvvVE~--t~~~~~~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVEC--TSSEAVAEYYEKALERGKHVVTANKGALA-DEALYEELREAARKNGVR 113 (117)
T ss_dssp SSHHHHHTHTT-SEEEE---SSCHHHHHHHHHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHHHT-E
T ss_pred CCHHHHhcCcCCCEEEEC--CCchHHHHHHHHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHHcCCE
Confidence 677888876777777777 45567777788999999999887655544 444333333333344433
No 200
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=29.16 E-value=2.1e+02 Score=20.33 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=27.8
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCC-eEEEecCCCC-CCCHHHHHH
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGF-RVFFSTDATA-TSDLELHEA 176 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~-~v~vv~Da~~-~~~~~~h~~ 176 (201)
.|++.|+....=+-+-+|.+...|. .++++...+. ..++...+.
T Consensus 3 ~vvl~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~~~~~~~~~r~ 48 (142)
T PF00588_consen 3 IVVLDNVQDPGNLGAIIRTAAAFGVDGVILVGPRCADPYNPKVLRA 48 (142)
T ss_dssp EEEEES-SSHHHHHHHHHHHHHTTESEEEEESSSSSTTTSHHHHHH
T ss_pred EEEEeCCCCcCcHHHHHHHHHHhCCchhheeccccccccccccccc
Confidence 4677777777777888888888887 5666563433 444444443
No 201
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=29.11 E-value=3.2e+02 Score=22.31 Aligned_cols=43 Identities=21% Similarity=0.108 Sum_probs=29.1
Q ss_pred CchHHHHHhCCCcEEEEeeccCchh--HHHHHHHHH-hCCCeEEEe
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLC--CETTARDAF-VRGFRVFFS 162 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~C--V~~Ta~~a~-~~G~~v~vv 162 (201)
..+.+++.+++.+++.+++...... ...+.+.++ +.|+++...
T Consensus 124 ~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 169 (334)
T cd06327 124 NGTAPALVKAGGKKWFFLTADYAFGHSLERDARKVVKANGGKVVGS 169 (334)
T ss_pred HHHHHHHHHhcCCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCc
Confidence 3466777778899999999888776 334444444 468777543
No 202
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=29.02 E-value=2.3e+02 Score=20.91 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=45.5
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCH--HHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDL--ELHEATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~--~~h~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
.+|.++|-.-+..+.+-+..+...|.+++++.-.--.+.+ +.-+.+-+.....++.+.-++++-+.+.
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~ 72 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALK 72 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcC
Confidence 4788889733777788888899999998888776644443 5555666666655665544455544443
No 203
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.96 E-value=94 Score=30.74 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCcEEEEeec---------cCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 130 GVEEVIVCGV---------MTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 130 gi~~lvi~G~---------~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
+.++|+|.|. ..|+|....++.+.++||+++++..--
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCc
Confidence 5678888876 568999999999999999998776543
No 204
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.92 E-value=49 Score=26.67 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCch
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRL 122 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L 122 (201)
.+...+|.+.|++.|+..+.+.+... +.++..++.. -+.|-.-.-..+..|
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~----------------------s~d~l~~~~~-------~~~KIaS~dl~n~~l 105 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEE----------------------SVDFLEELGV-------PAYKIASGDLTNLPL 105 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHH----------------------HHHHHHHHT--------SEEEE-GGGTT-HHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHH----------------------HHHHHHHcCC-------CEEEeccccccCHHH
Confidence 56778899999999987776654322 1122322221 122222112335688
Q ss_pred HHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHH---HHHHHHHhhcce
Q 028963 123 QERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELH---EATLKNLAYGFA 186 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h---~~al~~l~~~~~ 186 (201)
.+.+.+.|..-|+=+|.+|-.=|...+.-..+.|-.-+++-=|++++..... -..+..|+..|.
T Consensus 106 L~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 106 LEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp HHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST
T ss_pred HHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC
Confidence 8899999999999999999988888777776888888888889999864333 334555554443
No 205
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.85 E-value=88 Score=28.12 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec--CCCCCC
Q 028963 129 MGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST--DATATS 169 (201)
Q Consensus 129 ~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~--Da~~~~ 169 (201)
....+|||.|. -..=+++|+.+.+.|++|+|++ |.++++
T Consensus 13 ~~~~~VIVIGA--GiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGA--GLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECC--cHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 34557888885 4567899999999999999985 555553
No 206
>PRK09620 hypothetical protein; Provisional
Probab=28.69 E-value=1.3e+02 Score=24.01 Aligned_cols=92 Identities=7% Similarity=0.017 Sum_probs=54.9
Q ss_pred EEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCc-----------------hhHHHHHHHHHh-CCCeEEEecCCCCCC
Q 028963 108 VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTN-----------------LCCETTARDAFV-RGFRVFFSTDATATS 169 (201)
Q Consensus 108 vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~-----------------~CV~~Ta~~a~~-~G~~v~vv~Da~~~~ 169 (201)
.+.-++-|.|-+..|.+.|.++|.+-++|.|..+. .-....+..++. .++++++..-|.+++
T Consensus 21 R~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 21 RGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHHHhcccCCCEEEECccccce
Confidence 34456667777777888888888777667764331 122233344454 478999999999988
Q ss_pred CHHHHHHH-H------HHHh---hcceEEeeHHHHHHhhc
Q 028963 170 DLELHEAT-L------KNLA---YGFAYLFDCERLEAGLF 199 (201)
Q Consensus 170 ~~~~h~~a-l------~~l~---~~~~~v~~~~e~~~~l~ 199 (201)
.++..... . .-+. ..-.++..+.++++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~Ki~~~~~~~l~L~~~pdIl~~l~ 140 (229)
T PRK09620 101 VVDKICDQEGNVLDMNGKISSDIAPIIHFQKAPKVLKQIK 140 (229)
T ss_pred ecccccccccccccccCCCcCCCCCeEEEEECcHHHHHHH
Confidence 76432110 0 0111 11246777777777764
No 207
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.61 E-value=3.7e+02 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=10.1
Q ss_pred hHHHHHhCCCcEEEEeeccCc
Q 028963 122 LQERLVGMGVEEVIVCGVMTN 142 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~~T~ 142 (201)
+...|++.|++..++.|+..+
T Consensus 50 v~~~L~~~g~~~~~~~~v~~~ 70 (382)
T PRK10624 50 VTDVLDAAGLAYEIYDGVKPN 70 (382)
T ss_pred HHHHHHHCCCeEEEeCCCCCC
Confidence 444455555554444455433
No 208
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.43 E-value=1e+02 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
-.+.+.+.++.||++|.|||.+.....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 357788888999999999999875533
No 209
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=28.29 E-value=1.6e+02 Score=23.47 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=34.0
Q ss_pred CCeEEEEEeccCccCCC------chhHHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 22 KSSVLLVIDMQNHFSSI------AKPILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
.+.-+|+||.-+-.... ...+-.-..+|-+.|++.++|||.+.+.++.
T Consensus 129 ~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~ 182 (259)
T PF03796_consen 129 KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQLNRE 182 (259)
T ss_dssp TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGG
T ss_pred cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccChh
Confidence 45679999988765542 1233444556777889999999999887654
No 210
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=28.10 E-value=3.9e+02 Score=22.94 Aligned_cols=65 Identities=11% Similarity=-0.069 Sum_probs=42.0
Q ss_pred EEEEeecc------CchhHH-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 133 EVIVCGVM------TNLCCE-TTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 133 ~lvi~G~~------T~~CV~-~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
+|.++|.- ++ +|. +-+..+...|.+|+++.--.-...++..+.+-+..+..++.+.-+.++-+++
T Consensus 172 kvai~~~~d~~~gr~~-~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~ 243 (357)
T TIGR03316 172 KFAMTWAYSPSYGKPL-SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAF 243 (357)
T ss_pred EEEEEeccccccCccc-hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 68888742 33 444 4455666789999999876555567766666666666676665555554444
No 211
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=28.09 E-value=1.1e+02 Score=21.49 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCCCCCC------CchHHHHHhCCCcEEEEeeccCchhHH
Q 028963 103 AGADEVIEKNTYSAFGN------TRLQERLVGMGVEEVIVCGVMTNLCCE 146 (201)
Q Consensus 103 ~~~~~vv~K~~~saf~~------t~L~~~L~~~gi~~lvi~G~~T~~CV~ 146 (201)
.++|..+.++--+.... ..|+-.....|+++|+|+|=.-..-+.
T Consensus 24 ~~Gd~fv~Rn~Gn~v~~~~~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 24 GPGDLFVVRNAGNLVPPYDLDVLASLEYAVEVLGVKHIIVCGHTDCGAVK 73 (119)
T ss_pred CCCCEEEEeccCCcCCCCcccHHHHHHHHHHhhCCCEEEEEccCCCcHHH
Confidence 56787777765444432 245555577899999999954444333
No 212
>PRK07814 short chain dehydrogenase; Provisional
Probab=28.03 E-value=3e+02 Score=21.62 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=12.8
Q ss_pred CCCCCCchHHHHHhCCCcEEEEeec
Q 028963 115 SAFGNTRLQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 115 saf~~t~L~~~L~~~gi~~lvi~G~ 139 (201)
+.+-+..+.++|.++|. +|++++-
T Consensus 19 sggIG~~~a~~l~~~G~-~Vi~~~r 42 (263)
T PRK07814 19 GRGLGAAIALAFAEAGA-DVLIAAR 42 (263)
T ss_pred CChHHHHHHHHHHHCCC-EEEEEeC
Confidence 44445556666666665 4544443
No 213
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=27.99 E-value=97 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=30.5
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
|++.||=.-+++....+-+...+.++.+++.|..++.+.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaT 39 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLAT 39 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEe
Confidence 577888888887655566777788888999999888775
No 214
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=27.95 E-value=99 Score=21.49 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=31.7
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.++|.+...+|+.....++.++++.+..+..++.||.+.
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 466666778888778889999999999888888888774
No 215
>PRK12743 oxidoreductase; Provisional
Probab=27.59 E-value=3e+02 Score=21.48 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=14.7
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+++|+|..... =.+.++...++|++|+++
T Consensus 4 ~vlItGas~gi-G~~~a~~l~~~G~~V~~~ 32 (256)
T PRK12743 4 VAIVTASDSGI-GKACALLLAQQGFDIGIT 32 (256)
T ss_pred EEEEECCCchH-HHHHHHHHHHCCCEEEEE
Confidence 45556643332 234455555566666544
No 216
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.56 E-value=90 Score=27.40 Aligned_cols=41 Identities=34% Similarity=0.542 Sum_probs=32.4
Q ss_pred CeEEEEEeccCccCCC------------------------chhHHHHHHHHHHHHHHCCCcEEEE
Q 028963 23 SSVLLVIDMQNHFSSI------------------------AKPILDNTLATVQLCRRASIPVFFT 63 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~------------------------~~~~i~~i~~l~~~ar~~g~~vi~~ 63 (201)
+.-||=+|.++.|... +..++.+++.+++.||+.|.||+.=
T Consensus 113 nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 113 NQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred cceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEEC
Confidence 4468899999887631 3446788999999999999998864
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=27.54 E-value=2e+02 Score=22.66 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=27.6
Q ss_pred CCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 21 PKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 21 ~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
..+.+++|||...+. .+...+++..+...+.|++.+..
T Consensus 109 ~~D~~llVvda~~g~-------~~~d~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 109 APDYAMLVVAANAGI-------IGMTKEHLGLALALNIPVFVVVT 146 (224)
T ss_pred CCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCEEEEEE
Confidence 356789999988764 34556677788889999776643
No 218
>PRK07831 short chain dehydrogenase; Provisional
Probab=27.32 E-value=2.6e+02 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=8.6
Q ss_pred CCchHHHHHhCCCcEEEEe
Q 028963 119 NTRLQERLVGMGVEEVIVC 137 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~ 137 (201)
+..+...|.++|.+ |+++
T Consensus 31 G~~ia~~l~~~G~~-V~~~ 48 (262)
T PRK07831 31 GSATARRALEEGAR-VVIS 48 (262)
T ss_pred HHHHHHHHHHcCCE-EEEE
Confidence 34455555555543 4443
No 219
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=27.32 E-value=1.1e+02 Score=24.70 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCeEEEEEeccCccCC-----Cc-----hhH-HHHHHHHHHHHHHCCCcEEEEecccCCC
Q 028963 22 KSSVLLVIDMQNHFSS-----IA-----KPI-LDNTLATVQLCRRASIPVFFTRHCHKSP 70 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~-----~~-----~~~-i~~i~~l~~~ar~~g~~vi~~~~~~~~~ 70 (201)
.+.-|||||=...+.. .. ... ..-+..|...|++++++||.|++....+
T Consensus 132 ~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~ 191 (256)
T PF08423_consen 132 SKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKI 191 (256)
T ss_dssp SCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSST
T ss_pred cceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecC
Confidence 4688999998886542 11 122 3334456667889999999999887544
No 220
>PRK10736 hypothetical protein; Provisional
Probab=27.29 E-value=2.7e+02 Score=24.07 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=41.8
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
+-++|+-......-+.||..|.+.|-+|+.+.-...+.... -....+++.-..|.+.+|++.+|.
T Consensus 220 ~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~i~~~~s~---G~n~LI~~GA~lv~~~~Di~~~l~ 284 (374)
T PRK10736 220 KGVLVVEAALRSGSLVTARCALEQGRDVFALPGPIGNPGSE---GPHWLIKQGAYLVTSPEDILENLQ 284 (374)
T ss_pred CeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCCCCCccch---hHHHHHHCCCEEeCCHHHHHHHhh
Confidence 34566666666667999999999999999997555443211 112223333334677778887773
No 221
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.27 E-value=2.8e+02 Score=21.84 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=18.4
Q ss_pred cEEEEeeccC-chhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMT-NLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T-~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+.++|+|... ..--.+.|+...++|++|++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 4566666652 455556666666666666554
No 222
>PRK04148 hypothetical protein; Provisional
Probab=27.20 E-value=1.8e+02 Score=21.17 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=4.7
Q ss_pred EEEEeeccCc
Q 028963 133 EVIVCGVMTN 142 (201)
Q Consensus 133 ~lvi~G~~T~ 142 (201)
+++.+|+-+.
T Consensus 19 kileIG~GfG 28 (134)
T PRK04148 19 KIVELGIGFY 28 (134)
T ss_pred EEEEEEecCC
Confidence 3555555433
No 223
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=27.18 E-value=66 Score=30.37 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=48.5
Q ss_pred HHHHHhCCCcEEEEee--ccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHH
Q 028963 123 QERLVGMGVEEVIVCG--VMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERL 194 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G--~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~ 194 (201)
.+.||+.||+-..++| +.|-.|+.-++ ..+.+|-.+.|+.+...-.+..++-..+++ +...+-|++-+.+
T Consensus 667 LElLRNAgikiWMLTGDKlETA~ciAkSs-~L~sR~q~ihv~~~v~sr~dah~eL~~lR~-k~~~aLvi~G~Sl 738 (1051)
T KOG0210|consen 667 LELLRNAGIKIWMLTGDKLETAICIAKSS-RLFSRGQYIHVIRSVTSRGDAHNELNNLRR-KTDCALVIDGESL 738 (1051)
T ss_pred HHHHhhcCcEEEEEcCcchhheeeeehhc-cceecCceEEEEEecCCchHHHHHHHHhhc-CCCcEEEEcCchH
Confidence 3789999999999999 67888886655 367899999999998766543333323322 2334567776544
No 224
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=27.15 E-value=1.3e+02 Score=25.33 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHh
Q 028963 124 ERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182 (201)
Q Consensus 124 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~ 182 (201)
..++..| +-.+|+| +||.-=.+=|+++..+||+|++++ ++++.-+..-+.+.
T Consensus 43 ~~~~~~g-~WAVVTG-aTDGIGKayA~eLAkrG~nvvLIs-----Rt~~KL~~v~kEI~ 94 (312)
T KOG1014|consen 43 DLKEKLG-SWAVVTG-ATDGIGKAYARELAKRGFNVVLIS-----RTQEKLEAVAKEIE 94 (312)
T ss_pred chHHhcC-CEEEEEC-CCCcchHHHHHHHHHcCCEEEEEe-----CCHHHHHHHHHHHH
Confidence 4555667 7777777 467777788888889999988875 45555555444444
No 225
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.08 E-value=2.2e+02 Score=24.96 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=6.3
Q ss_pred HHHHHhCCCeEEEe
Q 028963 149 ARDAFVRGFRVFFS 162 (201)
Q Consensus 149 a~~a~~~G~~v~vv 162 (201)
|..+.++|++|+++
T Consensus 32 A~~L~~~G~~V~~~ 45 (480)
T PRK01438 32 ADALLELGARVTVV 45 (480)
T ss_pred HHHHHHCCCEEEEE
Confidence 44444445544443
No 226
>PRK06181 short chain dehydrogenase; Provisional
Probab=26.85 E-value=3.1e+02 Score=21.39 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.7
Q ss_pred CCCchHHHHHhCCCcEEEEe
Q 028963 118 GNTRLQERLVGMGVEEVIVC 137 (201)
Q Consensus 118 ~~t~L~~~L~~~gi~~lvi~ 137 (201)
-+..+...|.++|. +|+++
T Consensus 13 iG~~la~~l~~~g~-~Vi~~ 31 (263)
T PRK06181 13 IGRALAVRLARAGA-QLVLA 31 (263)
T ss_pred HHHHHHHHHHHCCC-EEEEE
Confidence 34445555555554 34433
No 227
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=26.80 E-value=1.9e+02 Score=26.77 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=40.1
Q ss_pred HhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 127 VGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 127 ~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
++.|.+++++..-+-+.++ ++|..+...|++++++..... .+.....+..|+..|++|+..
T Consensus 314 ~~~g~~~vi~e~gsGnhG~-A~A~~aa~~Gl~~~I~m~~~~---~~~~~~nv~~m~~~GA~Vi~v 374 (610)
T PRK13803 314 KRMGKTRIIAETGAGQHGV-ATATACALFGLKCTIFMGEED---IKRQALNVERMKLLGANVIPV 374 (610)
T ss_pred HHcCCCEEEEecChHHHHH-HHHHHHHHcCCcEEEEEeCCc---ccchhhHHHHHHHCCCEEEEE
Confidence 3567778887443345444 667788899999988865442 122334467788888888754
No 228
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=26.79 E-value=2.6e+02 Score=23.25 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=25.9
Q ss_pred CcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEe
Q 028963 131 VEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLF 189 (201)
Q Consensus 131 i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~ 189 (201)
.++|+-++ ..|.++ +.|..+..+|++++++.....+ + .-++.|+..|++|+
T Consensus 51 ~~~vv~aS-sGN~g~-alA~~a~~~G~~~~iv~p~~~~--~----~k~~~l~~~GA~v~ 101 (316)
T cd06448 51 CVHVVCSS-GGNAGL-AAAYAARKLGVPCTIVVPESTK--P----RVVEKLRDEGATVV 101 (316)
T ss_pred CCeEEEeC-CcHHHH-HHHHHHHHcCCCEEEEECCCCC--H----HHHHHHHHcCCEEE
Confidence 45555554 334433 4455555667776666665432 1 12444445556555
No 229
>PRK05755 DNA polymerase I; Provisional
Probab=26.71 E-value=1.3e+02 Score=29.06 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=39.3
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+.+.+.|+..|+..+..-|+..|-.+.+-|..+...|+.|+|++
T Consensus 89 ~~~~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~~i~S 132 (880)
T PRK05755 89 PLIRELLRALGIPLLELEGYEADDVIGTLAKQAEAAGYEVLIVT 132 (880)
T ss_pred HHHHHHHHHCCCCEEeeCCccHHHHHHHHHHHHHhCCCcEEEEc
Confidence 46677888999999999999999999988888888899999887
No 230
>PTZ00056 glutathione peroxidase; Provisional
Probab=26.70 E-value=1.5e+02 Score=22.94 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=33.2
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.++|.....+|+......+.++++.+..+..|+.||.+.
T Consensus 41 vvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 41 VLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 466777888998888889999999999999999888875
No 231
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.70 E-value=3.2e+02 Score=21.97 Aligned_cols=54 Identities=19% Similarity=0.044 Sum_probs=34.1
Q ss_pred cEEEEeeccCchhHH-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceE
Q 028963 132 EEVIVCGVMTNLCCE-TTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAY 187 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~-~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~ 187 (201)
+-+|+||---|..-- ..|+.+..+||+|.|+. ......+..+.+++.++..+..
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~--~~~~~~~~~~~~~~~~~~~g~~ 116 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY--PKQSSKPHYENLVTQCEDLGIP 116 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE--cCCCChHHHHHHHHHHHHcCCC
Confidence 457888876655543 67888889999999887 2222233325556666655544
No 232
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.63 E-value=4e+02 Score=22.67 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=7.8
Q ss_pred hHHHHHhCCCcEEEEeec
Q 028963 122 LQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~ 139 (201)
+...|++.|++..++.|+
T Consensus 48 v~~~L~~~~~~~~~f~~v 65 (377)
T cd08176 48 VTDVLDEAGIDYVIYDGV 65 (377)
T ss_pred HHHHHHHcCCeEEEeCCC
Confidence 344444444444444343
No 233
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=26.61 E-value=3.1e+02 Score=23.47 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHHHhCCCcEEEEee-ccCchhHHHHHHHHH-hCCCeEEEec-CCCCCCCHHHHHHHHHHHhh
Q 028963 124 ERLVGMGVEEVIVCG-VMTNLCCETTARDAF-VRGFRVFFST-DATATSDLELHEATLKNLAY 183 (201)
Q Consensus 124 ~~L~~~gi~~lvi~G-~~T~~CV~~Ta~~a~-~~G~~v~vv~-Da~~~~~~~~h~~al~~l~~ 183 (201)
..|+..+.++++|+| ++.|........... .+|+++++.. +-|++...-....++..++.
T Consensus 255 rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 255 RALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred HHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 446678888888875 666666666666666 7888886654 55555444444455555553
No 234
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=26.56 E-value=2e+02 Score=20.25 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=31.1
Q ss_pred EEEEeccCccCCC-----ch-------hHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 26 LLVIDMQNHFSSI-----AK-------PILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 26 LlviD~Q~~f~~~-----~~-------~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
||++|+=+-+.+. .. ...+.+..+++..+++|.++..+...
T Consensus 2 li~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYN 54 (128)
T ss_pred EEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCC
Confidence 6778888876654 11 26889999999999999987777544
No 235
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=26.53 E-value=2.8e+02 Score=22.66 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=12.3
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+++|+|... .--.++++.+..+|++|+++
T Consensus 8 ~vlVTGas~-gIG~~~a~~L~~~G~~V~~~ 36 (322)
T PRK07453 8 TVIITGASS-GVGLYAAKALAKRGWHVIMA 36 (322)
T ss_pred EEEEEcCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 444444432 22234444444445544443
No 236
>PRK12744 short chain dehydrogenase; Provisional
Probab=26.50 E-value=3.1e+02 Score=21.34 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=14.1
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+++|+|.... ==...|+.+.+.|++|+++
T Consensus 10 ~vlItGa~~g-IG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 10 VVLIAGGAKN-LGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred EEEEECCCch-HHHHHHHHHHHCCCcEEEE
Confidence 4555554332 2234455555556654444
No 237
>PRK05867 short chain dehydrogenase; Provisional
Probab=26.50 E-value=3.1e+02 Score=21.30 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=5.7
Q ss_pred CCchHHHHHhCCC
Q 028963 119 NTRLQERLVGMGV 131 (201)
Q Consensus 119 ~t~L~~~L~~~gi 131 (201)
+..+...|.++|.
T Consensus 22 G~~ia~~l~~~G~ 34 (253)
T PRK05867 22 GKRVALAYVEAGA 34 (253)
T ss_pred HHHHHHHHHHCCC
Confidence 3344444444443
No 238
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.42 E-value=1e+02 Score=27.09 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=36.6
Q ss_pred CchHHHHHhCCCcEEEEe---eccCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 120 TRLQERLVGMGVEEVIVC---GVMTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~---G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
.++...|++.|++-+|++ |.+|- |+..-++..-+.|+.|+.+...+
T Consensus 326 ~eIa~~Lk~dgVDAvILtstCgtCtr-cga~m~keiE~~GIPvV~i~~~~ 374 (431)
T TIGR01917 326 KEFSKELLAAGVDAVILTSTUGTCTR-CGATMVKEIERAGIPVVHICTVT 374 (431)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcchh-HHHHHHHHHHHcCCCEEEEeech
Confidence 567888999999999998 66654 77777777778899888776654
No 239
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=26.42 E-value=1.2e+02 Score=25.23 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHH-HH-hCCCeEEEecC
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARD-AF-VRGFRVFFSTD 164 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~-a~-~~G~~v~vv~D 164 (201)
++..|+++|+++|-....|++..... .. .+|+++++..-
T Consensus 254 ~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~ 294 (305)
T TIGR00329 254 LKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPL 294 (305)
T ss_pred HHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 34468999999999999998866543 33 67899988776
No 240
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.17 E-value=3.6e+02 Score=23.16 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=39.5
Q ss_pred CCCEEEECCCCCC-CCC-CchHHHHHhCCCcEEEEe--ec---c---CchhHHHHHHHHHhCCCeEEEecCCCCCCCHHH
Q 028963 104 GADEVIEKNTYSA-FGN-TRLQERLVGMGVEEVIVC--GV---M---TNLCCETTARDAFVRGFRVFFSTDATATSDLEL 173 (201)
Q Consensus 104 ~~~~vv~K~~~sa-f~~-t~L~~~L~~~gi~~lvi~--G~---~---T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~ 173 (201)
-+-+++-|++.++ ... -.-.+++.+.|.++|+|| |+ . +..-+.-.+...+..-|++-|+-|.+-+.....
T Consensus 207 t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd 286 (352)
T PRK13396 207 QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSE 286 (352)
T ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHH
Confidence 4567777777652 110 122345556788888888 44 3 222333344444444456667778886655444
Q ss_pred HHH
Q 028963 174 HEA 176 (201)
Q Consensus 174 h~~ 176 (201)
|-.
T Consensus 287 ~~~ 289 (352)
T PRK13396 287 YVP 289 (352)
T ss_pred HHH
Confidence 433
No 241
>PRK09186 flagellin modification protein A; Provisional
Probab=25.96 E-value=3.1e+02 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=10.6
Q ss_pred CCCCCchHHHHHhCCCcEEEEee
Q 028963 116 AFGNTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 116 af~~t~L~~~L~~~gi~~lvi~G 138 (201)
.+-+..+...|.+.|.+ |++++
T Consensus 14 ~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 14 GLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred chHHHHHHHHHHHCCCE-EEEEe
Confidence 33344555555555543 44443
No 242
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=25.86 E-value=95 Score=22.52 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.1
Q ss_pred EEEeeccCchhHHHHHHHHHhCCCeEEEecCCCC
Q 028963 134 VIVCGVMTNLCCETTARDAFVRGFRVFFSTDATA 167 (201)
Q Consensus 134 lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~ 167 (201)
|+|+|- ..+..+-++-|...||+|+|+.+--.
T Consensus 1 L~I~Ga--G~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGA--GHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES---STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeC--cHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 345553 45677888889999999999988744
No 243
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=25.83 E-value=95 Score=25.59 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=41.4
Q ss_pred CcccchhhhhhhhccCCCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 3 TSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
|.-+|+|+++...+..-+.+ . +..+|.+.+..+...|++.++.|-..|..+|.=.
T Consensus 139 tLh~Ssy~Awkalr~~~~~~-p------iiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEG 193 (299)
T COG2074 139 TLHTSSYDAWKALRDPTDEN-P------IIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEG 193 (299)
T ss_pred hhhHhHHHHHHHhcCCCCCc-c------hhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEe
Confidence 45678899888766432222 2 5678888889999999999999999998766543
No 244
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.76 E-value=3.2e+02 Score=22.30 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=50.8
Q ss_pred CchHHHHHhCCCc--EEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHh
Q 028963 120 TRLQERLVGMGVE--EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAG 197 (201)
Q Consensus 120 t~L~~~L~~~gi~--~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~ 197 (201)
.-|.+.|.++|++ ++.++|-.-+ -+....+.|.++ +++++++-..+...++....++...... .++-.++.++.
T Consensus 24 ~~la~~L~~~G~~v~~~~~VgD~~~-~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~--~lv~~~~al~~ 99 (255)
T COG1058 24 AFLADELTELGVDLARITTVGDNPD-RIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGR--PLVLDEEALAM 99 (255)
T ss_pred HHHHHHHHhcCceEEEEEecCCCHH-HHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCC--CcccCHHHHHH
Confidence 3578899999985 6677775544 455677788888 9999999999988777666665543322 23333444444
Q ss_pred h
Q 028963 198 L 198 (201)
Q Consensus 198 l 198 (201)
+
T Consensus 100 i 100 (255)
T COG1058 100 I 100 (255)
T ss_pred H
Confidence 3
No 245
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.65 E-value=1.4e+02 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=13.4
Q ss_pred CCCCCchHHHHHhCCCcEEEEeec
Q 028963 116 AFGNTRLQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 116 af~~t~L~~~L~~~gi~~lvi~G~ 139 (201)
.+-+..+...|.++|. +|++++-
T Consensus 11 ggiG~~ia~~l~~~g~-~V~~~~r 33 (251)
T PRK06924 11 QGLGEAIANQLLEKGT-HVISISR 33 (251)
T ss_pred chHHHHHHHHHHhcCC-EEEEEeC
Confidence 3445566667766776 4555554
No 246
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.63 E-value=1.2e+02 Score=22.76 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
-.+.+.++++.|++.|.+||.+...+..
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4577788889999999999999876543
No 247
>PRK08643 acetoin reductase; Validated
Probab=25.61 E-value=3.2e+02 Score=21.18 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=9.9
Q ss_pred CCCCchHHHHHhCCCcEEEEee
Q 028963 117 FGNTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 117 f~~t~L~~~L~~~gi~~lvi~G 138 (201)
+-+..+.+.|.++|. +|++++
T Consensus 13 giG~~la~~l~~~G~-~v~~~~ 33 (256)
T PRK08643 13 GIGFAIAKRLVEDGF-KVAIVD 33 (256)
T ss_pred hHHHHHHHHHHHCCC-EEEEEe
Confidence 334455555555554 344443
No 248
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.22 E-value=1.4e+02 Score=23.65 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=14.4
Q ss_pred cEEEEeeccC-chhHHHHHHHHHhCCCeEEE
Q 028963 132 EEVIVCGVMT-NLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 132 ~~lvi~G~~T-~~CV~~Ta~~a~~~G~~v~v 161 (201)
+.++|+|... ..-=.++|+...+.|++|++
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l 41 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAV 41 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEE
Confidence 3455555543 23334455555555555444
No 249
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.17 E-value=1.4e+02 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=18.9
Q ss_pred cEEEEeeccC-chhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMT-NLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T-~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+.++|+|..+ ..=-.++|+...+.|++|++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 4666666664 344456666666667766654
No 250
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=25.15 E-value=4.5e+02 Score=23.04 Aligned_cols=60 Identities=17% Similarity=-0.011 Sum_probs=39.3
Q ss_pred CcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC---CCCCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 131 VEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA---TATSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 131 i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da---~~~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
.++++|+|--.- -...|..+.++|.+|+++... ....+++..+...+.|+..+.++....
T Consensus 180 ~~~vvIIGgG~~--G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~ 242 (472)
T PRK05976 180 PKSLVIVGGGVI--GLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGA 242 (472)
T ss_pred CCEEEEECCCHH--HHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCc
Confidence 378999985432 233566667789999999533 233466666666777777777766543
No 251
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=25.13 E-value=82 Score=18.74 Aligned_cols=25 Identities=16% Similarity=-0.040 Sum_probs=18.7
Q ss_pred HHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 175 EATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 175 ~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
-..|+.|...|.+.+++.++.+.++
T Consensus 15 ~r~L~~l~~~G~~~vSS~~La~~~g 39 (50)
T PF06971_consen 15 LRYLEQLKEEGVERVSSQELAEALG 39 (50)
T ss_dssp HHHHHHHHHTT-SEE-HHHHHHHHT
T ss_pred HHHHHHHHHcCCeeECHHHHHHHHC
Confidence 3567888889999999999987764
No 252
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=25.11 E-value=1.9e+02 Score=20.47 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=33.3
Q ss_pred CchHHHHHhCCCcEEEE--eeccCchhHHHHHHHHHhCCCeE
Q 028963 120 TRLQERLVGMGVEEVIV--CGVMTNLCCETTARDAFVRGFRV 159 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi--~G~~T~~CV~~Ta~~a~~~G~~v 159 (201)
.-|.+.+.+.||..+++ .|...+.-|.+-+..+.+.|.++
T Consensus 78 ~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 78 ELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLEF 119 (119)
T ss_dssp HHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB-
T ss_pred HHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCCC
Confidence 45667788899999988 78888999999999999999764
No 253
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.10 E-value=1.3e+02 Score=21.39 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=33.8
Q ss_pred EEEEeccCc-cCCCchhHHHHHHHHHHHHHHCCCcEEEEeccc
Q 028963 26 LLVIDMQNH-FSSIAKPILDNTLATVQLCRRASIPVFFTRHCH 67 (201)
Q Consensus 26 LlviD~Q~~-f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~ 67 (201)
.++|++... +|+....-.+.++++.+.++..|+.+|.+....
T Consensus 30 ~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~ 72 (146)
T PF08534_consen 30 PVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD 72 (146)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS
T ss_pred eEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC
Confidence 367788888 888877778889999888889999998886543
No 254
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=25.07 E-value=1.3e+02 Score=24.12 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.4
Q ss_pred CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
-..+|+|.|- ..+....++-|...||+|+|+.|-
T Consensus 99 p~~~L~IfGa--G~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 99 PAPHVVLFGA--GHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CCCEEEEECC--cHHHHHHHHHHhcCCCEEEEEeCC
Confidence 4579999996 467788899999999999998765
No 255
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=24.90 E-value=2.1e+02 Score=20.65 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCeEEEecCC--CCCCCHHHHHHHHHHHhhcceEEeeHH-HHHH
Q 028963 147 TTARDAFVRGFRVFFSTDA--TATSDLELHEATLKNLAYGFAYLFDCE-RLEA 196 (201)
Q Consensus 147 ~Ta~~a~~~G~~v~vv~Da--~~~~~~~~h~~al~~l~~~~~~v~~~~-e~~~ 196 (201)
.++..+.+.||+|+|=+.+ -+.++++.. ...|+.|++.. +++.
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y-------~~aGA~I~~~~~ev~~ 63 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEY-------EEAGAEIVSRAEEVYS 63 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHH-------HHTTEEEESSHHHHHT
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHH-------hhCCcEEecCchhhcc
Confidence 5677888999999999988 566665533 34688888876 5543
No 256
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=24.88 E-value=4.3e+02 Score=22.35 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=20.9
Q ss_pred chHHHHHhCCCcEEEEeeccCch---hHHHHHHHHHhCCCeEEE
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNL---CCETTARDAFVRGFRVFF 161 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~---CV~~Ta~~a~~~G~~v~v 161 (201)
.+.+.|++.|++..++.|+..+- .|...+..+.+.+.+++|
T Consensus 45 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 88 (357)
T cd08181 45 DVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVI 88 (357)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 45556666666655555554332 233444444455655555
No 257
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=24.82 E-value=3.7e+02 Score=23.37 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=35.1
Q ss_pred HhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 127 VGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 127 ~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
++.|.+++|+.--+-+. -.+||..+...|++++|+-... +.+.....+..|+..|++|+.
T Consensus 102 ~~~Gk~~vIaetgaGnh-G~A~A~~aa~~Gl~c~I~mp~~---d~~rq~~nv~~m~~lGA~Vv~ 161 (397)
T PRK04346 102 KRMGKKRIIAETGAGQH-GVATATAAALLGLECVIYMGAE---DVERQALNVFRMKLLGAEVVP 161 (397)
T ss_pred HHcCCCeEEEecCcHHH-HHHHHHHHHHcCCcEEEEecCC---chhhhhhHHHHHHHCCCEEEE
Confidence 34577777652222233 3456667778888888877653 122223345667777887764
No 258
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.79 E-value=1.4e+02 Score=23.96 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.0
Q ss_pred cEEEEeeccC-chhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMT-NLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T-~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+.++|+|... ..-=.+.|+...+.|++|++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEe
Confidence 5788888776 366677777788888887765
No 259
>PRK05876 short chain dehydrogenase; Provisional
Probab=24.75 E-value=3.2e+02 Score=21.81 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=15.9
Q ss_pred CCCCCCCCchHHHHHhCCCcEEEEeecc
Q 028963 113 TYSAFGNTRLQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 113 ~~saf~~t~L~~~L~~~gi~~lvi~G~~ 140 (201)
+-+.+-+..+.+.|.++|.+ |++++..
T Consensus 13 Gas~gIG~ala~~La~~G~~-Vv~~~r~ 39 (275)
T PRK05876 13 GGASGIGLATGTEFARRGAR-VVLGDVD 39 (275)
T ss_pred CCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 33444456677777777763 5555544
No 260
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=24.72 E-value=3.9e+02 Score=21.82 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=20.8
Q ss_pred CCchHHHHHhCCCcEEEEeeccCchhHH
Q 028963 119 NTRLQERLVGMGVEEVIVCGVMTNLCCE 146 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G~~T~~CV~ 146 (201)
..-+..++.+.|.+++.+..-.+...-.
T Consensus 122 ~~~~~~~~~~~g~~~vail~~~~~~g~~ 149 (333)
T cd06359 122 HEAMGKYAQDKGYKRVFLIAPNYQAGKD 149 (333)
T ss_pred HHHHHHHHHHhCCCeEEEEecCchhhHH
Confidence 3456677788889999998887776544
No 261
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.67 E-value=2.5e+02 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHHHH--CCCcEEEEec
Q 028963 39 AKPILDNTLATVQLCRR--ASIPVFFTRH 65 (201)
Q Consensus 39 ~~~~i~~i~~l~~~ar~--~g~~vi~~~~ 65 (201)
.+.+.+++.++++.+++ .+.+|+++..
T Consensus 67 ~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 67 DEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 56789999999999999 7888888753
No 262
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=24.67 E-value=78 Score=24.07 Aligned_cols=43 Identities=26% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHH
Q 028963 150 RDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERL 194 (201)
Q Consensus 150 ~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~ 194 (201)
.+|...|-+|+||-|..++-. ...+|.+.+.+.+++|+...-+
T Consensus 116 ~~Ai~~g~rvvvVDDllATGG--Tl~AA~~Ll~r~ga~vvE~~~v 158 (183)
T KOG1712|consen 116 KGAIKPGQRVVVVDDLLATGG--TLAAATELLERVGAEVVECACV 158 (183)
T ss_pred ccccCCCCeEEEEechhhcCc--cHHHHHHHHHHhccEEEEEEEE
Confidence 467889999999999998865 4567788888889988876544
No 263
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=24.63 E-value=2.5e+02 Score=22.65 Aligned_cols=56 Identities=18% Similarity=0.012 Sum_probs=35.7
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEe
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLF 189 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~ 189 (201)
..++|.++| +.+-..|.+.. .|..+...|++++++..... ...-+..|+..+++++
T Consensus 51 a~~~~~~~v-v~assGN~g~a-~A~~a~~~g~~~~i~~p~~~------~~~~~~~~~~~Ga~v~ 106 (306)
T PF00291_consen 51 AKEKGGRTV-VGASSGNHGRA-LAYAAARLGLKCTIVVPEDV------SPEKLKQMRALGAEVI 106 (306)
T ss_dssp HHHTTTSEE-EEESSSHHHHH-HHHHHHHHTCEEEEEEETTS------HHHHHHHHHHTTCEEE
T ss_pred cccccccee-eeeccCCceeh-hhhhhhhccccceeeecccc------ccccccceeeecceEE
Confidence 344677777 66666666665 56677777999888884331 1244555666777665
No 264
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=24.52 E-value=3.9e+02 Score=24.62 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
.-+.++|+|.. ...-...++.+.++|++|+++
T Consensus 79 ~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval 110 (576)
T PLN03209 79 DEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAG 110 (576)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEE
Confidence 44678888875 345566677788888888765
No 265
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.47 E-value=1.1e+02 Score=26.81 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=35.7
Q ss_pred CchHHHHHhCCCcEEEEe---eccCchhHHHHHHHHHhCCCeEEEecC
Q 028963 120 TRLQERLVGMGVEEVIVC---GVMTNLCCETTARDAFVRGFRVFFSTD 164 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~---G~~T~~CV~~Ta~~a~~~G~~v~vv~D 164 (201)
+++...|++.|++-+|++ |.+|- |+..-++..-+.|+.|+.+..
T Consensus 326 ~eIa~~Lk~dgVDAVILTstCgtC~r-~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 326 KEFVVELKQGGVDAVILTSTUGTCTR-CGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcchh-HHHHHHHHHHHcCCCEEEEee
Confidence 567888999999999998 55544 777778888888998887766
No 266
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.44 E-value=3.9e+02 Score=21.69 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCC---CccccccccCCCCCCCEEEECCCCC-CCC
Q 028963 43 LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTA---DAELLPEIKGLVAGADEVIEKNTYS-AFG 118 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---g~~~~~~l~~~~~~~~~vv~K~~~s-af~ 118 (201)
.+.+..|.+.+++.|+|++.+.+....... .... . .....|+. ..++...+.. -+-+++-|++.+ ...
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~---l~~~-~-d~lkI~s~~~~n~~LL~~~a~---~gkPVilk~G~~~t~~ 146 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEI---VAEY-A-DILQIGARNMQNFELLKEVGK---QGKPVLLKRGMGNTIE 146 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHH---HHhh-C-CEEEECcccccCHHHHHHHhc---CCCcEEEeCCCCCCHH
Confidence 445555666778888888777655432110 0000 0 00111111 1123333433 355666666654 221
Q ss_pred C-CchHHHHHhCCCcEEEEe--eccCc------hhHHHHHHHHHhC-CCeEEEecCCCCCC
Q 028963 119 N-TRLQERLVGMGVEEVIVC--GVMTN------LCCETTARDAFVR-GFRVFFSTDATATS 169 (201)
Q Consensus 119 ~-t~L~~~L~~~gi~~lvi~--G~~T~------~CV~~Ta~~a~~~-G~~v~vv~Da~~~~ 169 (201)
. -.-.+++++.|.++|+|+ |+.+- ..-+.+...+.+. ++.|.+-+|=+.+.
T Consensus 147 e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~ 207 (260)
T TIGR01361 147 EWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGR 207 (260)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCc
Confidence 1 133455667888888886 66442 1122222223222 56655545554443
No 267
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=24.33 E-value=2.6e+02 Score=23.42 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=39.3
Q ss_pred CCchHHHHHhCCCcEEEEeeccC---chhHHHHHHHHHhCCCeEEEecCCCCCC
Q 028963 119 NTRLQERLVGMGVEEVIVCGVMT---NLCCETTARDAFVRGFRVFFSTDATATS 169 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G~~T---~~CV~~Ta~~a~~~G~~v~vv~Da~~~~ 169 (201)
+.++.+.+.+.|++-|||.|+-. ..........+.++|..|++.+.|-.+.
T Consensus 224 ~~~~l~~~~~~~~~GlVl~~~G~Gn~p~~~~~~l~~a~~~gipVV~~sq~~~G~ 277 (323)
T smart00870 224 DAELLDALLDSGAKGLVLEGTGAGNVPPDLLEALKEALERGIPVVRTSRCLNGR 277 (323)
T ss_pred CHHHHHHHHhCCCCEEEEEeeCCCCCCHHHHHHHHHHHHCCCEEEEeccCCCce
Confidence 34566666678999999998854 3356677778899999999999987653
No 268
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=24.29 E-value=92 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCcEEEEecc
Q 028963 45 NTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 45 ~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
|=..|-+..|+.|+||++.+..
T Consensus 105 nD~eLk~rlr~~GIPvi~lr~r 126 (136)
T COG1412 105 NDKELKRRLRENGIPVITLRQR 126 (136)
T ss_pred CCHHHHHHHHHcCCCEEEEeCC
Confidence 3345667788889999998854
No 269
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.26 E-value=3.3e+02 Score=20.86 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=12.0
Q ss_pred CCCCCchHHHHHhCCCcEEEEee
Q 028963 116 AFGNTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 116 af~~t~L~~~L~~~gi~~lvi~G 138 (201)
..-+..+...|.++|.+ |++++
T Consensus 17 g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 17 RGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred ChHHHHHHHHHHHcCCE-EEEEe
Confidence 33455666666666654 44443
No 270
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.05 E-value=3.6e+02 Score=21.26 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=10.4
Q ss_pred CCCCchHHHHHhCCCcEEEEeec
Q 028963 117 FGNTRLQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 117 f~~t~L~~~L~~~gi~~lvi~G~ 139 (201)
+-+..+...|.+.|. +|++++-
T Consensus 21 giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 21 VLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred hHHHHHHHHHHHCCC-EEEEEeC
Confidence 334455555555555 3444443
No 271
>PRK15492 triosephosphate isomerase; Provisional
Probab=23.91 E-value=3.2e+02 Score=22.28 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=44.2
Q ss_pred CCCCCCCCCCchHHHHHhCCCcEEEEee-------ccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 111 KNTYSAFGNTRLQERLVGMGVEEVIVCG-------VMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 111 K~~~saf~~t~L~~~L~~~gi~~lvi~G-------~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
....++|++.--...|++.|++.++|-= -.||.-|..-+..|.+.|..+++..+=
T Consensus 75 ~~~~Ga~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE 136 (260)
T PRK15492 75 PNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGE 136 (260)
T ss_pred CCCCCCccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3567899988888999999997766531 367889999999999999999986553
No 272
>PRK08265 short chain dehydrogenase; Provisional
Probab=23.86 E-value=2.9e+02 Score=21.74 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=12.2
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+++|+|... .=-.+.++.+.+.|++|+++
T Consensus 8 ~vlItGas~-gIG~~ia~~l~~~G~~V~~~ 36 (261)
T PRK08265 8 VAIVTGGAT-LIGAAVARALVAAGARVAIV 36 (261)
T ss_pred EEEEECCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 444444332 22233444444445544443
No 273
>PRK03094 hypothetical protein; Provisional
Probab=23.86 E-value=76 Score=21.01 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=16.2
Q ss_pred CCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 129 MGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 129 ~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
.+++-+|++|..+| .....+..+++.|+
T Consensus 34 ~~~Da~VitG~d~n------~mgi~d~~t~~pVI 61 (80)
T PRK03094 34 QGCDCCVVTGQDSN------VMGIADTSTKGSVI 61 (80)
T ss_pred CCcCEEEEeCCCcc------eecccccccCCcEE
Confidence 45667777777766 33444555554444
No 274
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=23.86 E-value=1.7e+02 Score=22.42 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCc
Q 028963 18 NPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIP 59 (201)
Q Consensus 18 ~~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~ 59 (201)
.+...+.+++|||...+.. +...+++..++..|.|
T Consensus 85 ~~~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~~ 119 (195)
T cd01884 85 GAAQMDGAILVVSATDGPM-------PQTREHLLLARQVGVP 119 (195)
T ss_pred HhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC
Confidence 3455678899999887642 3445566667778887
No 275
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=23.86 E-value=1e+02 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHCCCcEEEEec
Q 028963 45 NTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 45 ~i~~l~~~ar~~g~~vi~~~~ 65 (201)
-+..+...|.++++|++|+..
T Consensus 43 vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 43 LMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHHHHHcCCCEEEECC
Confidence 445777888999999999953
No 276
>PRK14031 glutamate dehydrogenase; Provisional
Probab=23.79 E-value=2.7e+02 Score=24.74 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=34.3
Q ss_pred hHHHHHhCCC----cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 122 LQERLVGMGV----EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 122 L~~~L~~~gi----~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
+.+.++..|. ++++|.|+ -.-=..+|.-+.+.|.+|++|+|.-++
T Consensus 215 ~~~~~~~~g~~l~g~rVaVQGf--GNVG~~aA~~L~e~GAkVVaVSD~~G~ 263 (444)
T PRK14031 215 LMEMLKTKGTDLKGKVCLVSGS--GNVAQYTAEKVLELGGKVVTMSDSDGY 263 (444)
T ss_pred HHHHHHhcCCCcCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEECCCCe
Confidence 4556666654 69999999 334447888899999999999996655
No 277
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.75 E-value=4.3e+02 Score=21.99 Aligned_cols=100 Identities=19% Similarity=0.048 Sum_probs=54.1
Q ss_pred ccccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC-C--cEEEEeeccCchhHHHHHHHHHhCCCeEEEecC
Q 028963 92 AELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG-V--EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164 (201)
Q Consensus 92 ~~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g-i--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~D 164 (201)
...+.++.. ..+-+||.-.. +..+.| ++--+.+..| + .+|.++|- .+.-+.+-+..+...|++|.++.-
T Consensus 109 ~~~~~~~a~--~~~vPVINag~-~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd-~~~v~~Sl~~~l~~~g~~v~~~~P 184 (304)
T PRK00779 109 HETLEELAE--YSTVPVINGLT-DLSHPCQILADLLTIYEHRGSLKGLKVAWVGD-GNNVANSLLLAAALLGFDLRVATP 184 (304)
T ss_pred hhHHHHHHH--hCCCCEEeCCC-CCCChHHHHHHHHHHHHHhCCcCCcEEEEEeC-CCccHHHHHHHHHHcCCEEEEECC
Confidence 344555655 44556666543 333333 2222222333 2 47889997 344455556677778999999987
Q ss_pred CCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 165 ATATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 165 a~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
-.--..++..+. ..+..|+.+..++++.+.+
T Consensus 185 ~~~~~~~~~~~~---~~~~~g~~~~~~~d~~~a~ 215 (304)
T PRK00779 185 KGYEPDPEIVEK---IAKETGASIEVTHDPKEAV 215 (304)
T ss_pred cccCCCHHHHHH---HHHHcCCeEEEEcCHHHHh
Confidence 655554444333 2234455555455544443
No 278
>PRK03670 competence damage-inducible protein A; Provisional
Probab=23.74 E-value=3.7e+02 Score=21.75 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=33.7
Q ss_pred CchHHHHHhCCCcEEEEeeccCchhHH-HHHHHHHhCCCeEEEecCCCCCCCHH
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNLCCE-TTARDAFVRGFRVFFSTDATATSDLE 172 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~CV~-~Ta~~a~~~G~~v~vv~Da~~~~~~~ 172 (201)
.-|...|++.|++-..+.=+.-+.-.. .+.+.+...++++++.+-.++....+
T Consensus 23 ~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD 76 (252)
T PRK03670 23 AFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDD 76 (252)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCC
Confidence 468888999998743332233334433 44455667789999999777665433
No 279
>PRK11823 DNA repair protein RadA; Provisional
Probab=23.69 E-value=1.6e+02 Score=25.96 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=33.7
Q ss_pred CCeEEEEEeccCccCCC--------chhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSI--------AKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~--------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
.+.-+||||-.+.+... ...+..-+..|.+.+++.|++++.+.|...
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk 209 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTK 209 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccC
Confidence 35679999987765431 123445566788999999999999987654
No 280
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=23.69 E-value=88 Score=21.07 Aligned_cols=40 Identities=5% Similarity=0.135 Sum_probs=27.0
Q ss_pred EEEeccCccCCCc--------hhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 27 LVIDMQNHFSSIA--------KPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 27 lviD~Q~~f~~~~--------~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
++.|+-+-..... ..+.+.+.++++..+++|.+++.+...
T Consensus 2 ~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~ 49 (139)
T cd01427 2 VLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNK 49 (139)
T ss_pred eEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCc
Confidence 5566666554432 256777888888888899887776543
No 281
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=23.61 E-value=1.7e+02 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=26.7
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCC
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSP 70 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~ 70 (201)
+|||+|...+. ..+..|...|+|||...+.+.+|
T Consensus 121 llIV~Dp~~d~------------qAI~EA~~lnIPvIal~DTds~p 154 (249)
T PTZ00254 121 LLIVTDPRTDH------------QAIREASYVNIPVIALCDTDSPL 154 (249)
T ss_pred EEEEeCCCcch------------HHHHHHHHhCCCEEEEecCCCCc
Confidence 78888876653 45667888999999999887654
No 282
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.50 E-value=3e+02 Score=21.14 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=14.9
Q ss_pred CCCCCCCchHHHHHhCCCcEEEEeeccC
Q 028963 114 YSAFGNTRLQERLVGMGVEEVIVCGVMT 141 (201)
Q Consensus 114 ~saf~~t~L~~~L~~~gi~~lvi~G~~T 141 (201)
-+.+-+..+...|.++|.+ |++++-..
T Consensus 13 asg~iG~~l~~~l~~~G~~-V~~~~r~~ 39 (251)
T PRK07231 13 ASSGIGEGIARRFAAEGAR-VVVTDRNE 39 (251)
T ss_pred CCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence 3344455666666666655 55555443
No 283
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.44 E-value=2.3e+02 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=23.4
Q ss_pred CcEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 131 VEEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 131 i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
-+++.|+|+--... +.|+-+.++|+.|++.
T Consensus 14 ~~~i~v~G~G~sG~--a~a~~L~~~G~~V~~~ 43 (458)
T PRK01710 14 NKKVAVVGIGVSNI--PLIKFLVKLGAKVTAF 43 (458)
T ss_pred CCeEEEEcccHHHH--HHHHHHHHCCCEEEEE
Confidence 46889999887654 7778888899988773
No 284
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.39 E-value=1.2e+02 Score=24.82 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=32.9
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
-.+++|++--... +...++...+.++..+++|.|++|+.....
T Consensus 9 ~~~l~DlDGvl~~-G~~~ipga~e~l~~L~~~g~~~iflTNn~~ 51 (269)
T COG0647 9 DGFLFDLDGVLYR-GNEAIPGAAEALKRLKAAGKPVIFLTNNST 51 (269)
T ss_pred CEEEEcCcCceEe-CCccCchHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3578887665543 556778888889999999999999986544
No 285
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=23.37 E-value=1.7e+02 Score=19.12 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecC
Q 028963 111 KNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164 (201)
Q Consensus 111 K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~D 164 (201)
|...++|.+++|.+||-.++. +.+-.=-...+..+.+.|+--.|..+
T Consensus 23 ~~y~~cF~GselVdWL~~~~~-------~~~R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 23 RTYTNCILGKELVNWLIRQGK-------AATRVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred EEcCcccChHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 457899999999999987642 13333333445567788887776554
No 286
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=23.27 E-value=4.4e+02 Score=21.91 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=55.1
Q ss_pred cccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC-C--cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 93 ELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG-V--EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 93 ~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g-i--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
..+.++.. ..+-+||.-.. +..+.| ++--+.+..| + -+|.++|-.. .-+.+-+..+...|++|.++.--
T Consensus 106 ~~~~~~a~--~~~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~~-~v~~Sl~~~l~~~g~~v~~~~P~ 181 (304)
T TIGR00658 106 EDVEELAK--YASVPVINGLT-DLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGN-NVCNSLMLAGAKLGMDVVVATPE 181 (304)
T ss_pred HHHHHHHH--hCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCCC-chHHHHHHHHHHcCCEEEEECCc
Confidence 44555655 44556666532 333333 2322333333 3 3688888763 34455566677889999999876
Q ss_pred CCCCCHHHHHHHHHHHhhcceEEeeHHHHHHh
Q 028963 166 TATSDLELHEATLKNLAYGFAYLFDCERLEAG 197 (201)
Q Consensus 166 ~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~ 197 (201)
.....++..+.+-+.....++.+.-+.++-+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a 213 (304)
T TIGR00658 182 GYEPDADIVKKAQEIAKENGGSVELTHDPVEA 213 (304)
T ss_pred hhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHH
Confidence 66555555544434344455555444444333
No 287
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.22 E-value=1.5e+02 Score=24.56 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=27.3
Q ss_pred CcEEEEeecc-CchhHHHHHHHHHhCCCeEEEe
Q 028963 131 VEEVIVCGVM-TNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 131 i~~lvi~G~~-T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
-+.++|+|.. +..==.++|+.+.++|++|++.
T Consensus 8 gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 8 GKIAFIAGIGDDQGYGWGIAKALAEAGATILVG 40 (299)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 3689999997 5666779999999999999884
No 288
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=23.12 E-value=1.3e+02 Score=25.77 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=35.1
Q ss_pred CCCeEEEEEeccCccCCCc----hhHHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 21 PKSSVLLVIDMQNHFSSIA----KPILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 21 ~~~~aLlviD~Q~~f~~~~----~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
..+.-++|||.-..|..+. ..+-.=|+++-+.|+..+..|||+.|....
T Consensus 192 Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hHtsks 244 (402)
T COG3598 192 QKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYIHHTSKS 244 (402)
T ss_pred HhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3456689999999998653 234445555566677889999999886553
No 289
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=23.09 E-value=1.9e+02 Score=22.55 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=27.5
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCC
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSP 70 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~ 70 (201)
..+++++|.+++ ..++.+|...++|+|...+.+-+|
T Consensus 144 P~~vii~~~~~~------------~~~i~Ea~~l~IP~i~i~Dtn~~~ 179 (211)
T PF00318_consen 144 PDLVIILDPNKN------------KNAIREANKLNIPTIAIVDTNCNP 179 (211)
T ss_dssp BSEEEESSTTTT------------HHHHHHHHHTTS-EEEEESTTS-G
T ss_pred CcEEEEeccccc------------chhHHHHHhcCceEEEeecCCCCc
Confidence 448999998876 456788999999999999876654
No 290
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=23.01 E-value=3.6e+02 Score=20.80 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=9.4
Q ss_pred CCchHHHHHhCCCcEEEEee
Q 028963 119 NTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G 138 (201)
+..+...|.+.|. +|++.+
T Consensus 13 G~~la~~l~~~G~-~v~~~~ 31 (254)
T TIGR02415 13 GKGIAERLAKDGF-AVAVAD 31 (254)
T ss_pred HHHHHHHHHHCCC-EEEEEe
Confidence 3445555555565 344443
No 291
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=23.01 E-value=1.5e+02 Score=24.64 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCeEEEEEeccCccCCC---c-------hh-HHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 22 KSSVLLVIDMQNHFSSI---A-------KP-ILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~---~-------~~-~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
.+.-|||||--..+... . .. +..-+..|...+++++++||.|.+....
T Consensus 197 ~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~ 255 (317)
T PRK04301 197 ENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMAR 255 (317)
T ss_pred CceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEec
Confidence 46679999988875432 1 11 2233556778889999999999886543
No 292
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.00 E-value=3.6e+02 Score=20.84 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=10.4
Q ss_pred CCCCchHHHHHhCCCcEEEEee
Q 028963 117 FGNTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 117 f~~t~L~~~L~~~gi~~lvi~G 138 (201)
+-+..+..+|.++|. +|++++
T Consensus 16 ~IG~~la~~l~~~G~-~V~~~~ 36 (258)
T PRK07890 16 GLGRTLAVRAARAGA-DVVLAA 36 (258)
T ss_pred cHHHHHHHHHHHcCC-EEEEEe
Confidence 334555555555554 344443
No 293
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=22.97 E-value=1.6e+02 Score=23.56 Aligned_cols=39 Identities=5% Similarity=-0.001 Sum_probs=33.2
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.++|.....+|+......+.++++.+..+..|+.||.+.
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 567777788888888889999999999999999888876
No 294
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=22.97 E-value=1.3e+02 Score=22.74 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=29.6
Q ss_pred EEEEeccCccCCCc-hhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 26 LLVIDMQNHFSSIA-KPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 26 LlviD~Q~~f~~~~-~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
||+.|+=.-++++. ..+-+.+.+.++..++.|.+++.+.
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T 40 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVT 40 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEC
Confidence 57888888888754 4566777788888888888777764
No 295
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.96 E-value=4.9e+02 Score=22.33 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=9.8
Q ss_pred HHHhCCCcEEEEe--eccC
Q 028963 125 RLVGMGVEEVIVC--GVMT 141 (201)
Q Consensus 125 ~L~~~gi~~lvi~--G~~T 141 (201)
++.+.|.++|+|+ |+.+
T Consensus 247 ~i~~~Gn~~i~L~erg~s~ 265 (360)
T PRK12595 247 YIMSQGNGQIILCERGIRT 265 (360)
T ss_pred HHHHCCCCCEEEECCccCC
Confidence 3445566666666 5553
No 296
>PRK07102 short chain dehydrogenase; Provisional
Probab=22.95 E-value=1.7e+02 Score=22.60 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=6.6
Q ss_pred HHHHHHHhCCCeEEEe
Q 028963 147 TTARDAFVRGFRVFFS 162 (201)
Q Consensus 147 ~Ta~~a~~~G~~v~vv 162 (201)
..++...++|++|+++
T Consensus 16 ~~a~~l~~~G~~Vi~~ 31 (243)
T PRK07102 16 ACARRYAAAGARLYLA 31 (243)
T ss_pred HHHHHHHhcCCEEEEE
Confidence 3334444444444333
No 297
>PRK07591 threonine synthase; Validated
Probab=22.93 E-value=4.9e+02 Score=22.66 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 125 RLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 125 ~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
.+.+.|.++|+ ++-+-|.+ .+.|.-+...|++++|+.....+ + .-+..++..|++|+..
T Consensus 131 ~A~~~g~~~vv-~aSsGN~g-~alA~~aa~~Gl~~~I~vP~~~~--~----~k~~~~~~~GA~Vi~v 189 (421)
T PRK07591 131 AARELGFTTVA-CASTGNLA-NSVAAHAARAGLDSCVFIPADLE--A----GKIVGTLVYGPTLVAV 189 (421)
T ss_pred HHHHcCCCEEE-EeCCCHHH-HHHHHHHHHcCCCEEEEEcCCCC--H----HHHHHHHHcCCEEEEE
Confidence 45668888874 56444544 45555666799998887765332 1 2245556677777644
No 298
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=22.89 E-value=1.9e+02 Score=19.65 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=31.7
Q ss_pred eEEEEEeccCc-cCCCchhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 24 SVLLVIDMQNH-FSSIAKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 24 ~aLlviD~Q~~-f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
.--+|+||.+- |++ ...+..+.++.+.++..|..++++...
T Consensus 48 ~~~vIlD~s~v~~iD--ssgi~~L~~~~~~~~~~g~~~~l~~~~ 89 (117)
T PF01740_consen 48 IKNVILDMSGVSFID--SSGIQALVDIIKELRRRGVQLVLVGLN 89 (117)
T ss_dssp SSEEEEEETTESEES--HHHHHHHHHHHHHHHHTTCEEEEESHH
T ss_pred ceEEEEEEEeCCcCC--HHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45899999983 332 345778888999999999999998643
No 299
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=22.87 E-value=1.9e+02 Score=20.27 Aligned_cols=40 Identities=3% Similarity=0.116 Sum_probs=32.4
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHC--CCcEEEEec
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRA--SIPVFFTRH 65 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~--g~~vi~~~~ 65 (201)
.++|++...+++......+.++++.+..+.. ++.|+++..
T Consensus 19 ~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~ 60 (132)
T cd02964 19 TVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR 60 (132)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 5888888999998888889999988887765 677777753
No 300
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=22.82 E-value=1.8e+02 Score=27.63 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCC----
Q 028963 44 DNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGN---- 119 (201)
Q Consensus 44 ~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~---- 119 (201)
..|..+++.|...|..|+-+.+.+..--..+. . ... -.++-+..+.. .++ .++--.++..|..
T Consensus 17 aaIravv~~a~~~g~~V~gi~~G~~GL~~~~~-------~-~~~--l~~~~v~~i~~--~GG-t~LGtsR~~~~~~~~~~ 83 (745)
T TIGR02478 17 AAVRAVVRMAIYVGCRVYAIREGYQGLVDGGD-------N-IEE--ANWEDVRGILS--LGG-TIIGTARCKEFRERPGR 83 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHhcCCC-------C-eEE--CCHHHHhhHHh--CCC-ceecCCCCCcccCHHHH
Confidence 45566777888889988888876542100000 0 000 01122333333 334 3444455555632
Q ss_pred CchHHHHHhCCCcEEEEeeccCch
Q 028963 120 TRLQERLVGMGVEEVIVCGVMTNL 143 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~T~~ 143 (201)
....+.|++.+|+.+++.|-....
T Consensus 84 ~~~~~~L~~~~Id~LivIGGdgS~ 107 (745)
T TIGR02478 84 LKAARNLIKRGIDNLVVIGGDGSL 107 (745)
T ss_pred HHHHHHHHHhCCCEEEEECChhHH
Confidence 245567899999999999987653
No 301
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=22.82 E-value=82 Score=20.68 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.6
Q ss_pred HHHHHhCCCcEEEEeec
Q 028963 123 QERLVGMGVEEVIVCGV 139 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~ 139 (201)
.+.|+.+||++|-++|-
T Consensus 44 aRkLd~qGI~~V~L~G~ 60 (77)
T PF12404_consen 44 ARKLDGQGIKNVALAGE 60 (77)
T ss_pred HHHHhhCCCceEEEecC
Confidence 45678899999999997
No 302
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.77 E-value=3.6e+02 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=12.8
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
.++|+|. +...=...++.+.++|++|+++
T Consensus 8 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~ 36 (241)
T PRK07454 8 RALITGA-SSGIGKATALAFAKAGWDLALV 36 (241)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEE
Confidence 4444443 3333344444444455544443
No 303
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.76 E-value=1.4e+02 Score=22.27 Aligned_cols=28 Identities=7% Similarity=0.013 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCC
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
--+.+.++++.|+++|.+||.+......
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3567778888899999999999866543
No 304
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.76 E-value=1.6e+02 Score=23.33 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=22.3
Q ss_pred cEEEEeecc-CchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVM-TNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~-T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|.. +..--.+.|+...+.|++|++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFT 38 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 577888874 5556667777777788887764
No 305
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=22.64 E-value=3.8e+02 Score=20.96 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=47.8
Q ss_pred CCchHHHHHhCCCcEEEEeeccCchhH------HH---HHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEe
Q 028963 119 NTRLQERLVGMGVEEVIVCGVMTNLCC------ET---TARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLF 189 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G~~T~~CV------~~---Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~ 189 (201)
+....+++++.|.+.+.-.-..-|... .. .+......| .|+++-|.. ..+.+.-...+..++..|-+.+
T Consensus 141 ~~~~~~~l~~~Gy~~v~w~v~~~Dw~~~~~~~~~~~~~~v~~~~~~g-~IiLlHd~~-~~t~~aL~~ii~~lk~~Gy~fv 218 (224)
T TIGR02884 141 SERTLAYTKELGYYTVFWSLAFKDWKVDEQPGWQYAYKQIMKKIHPG-AILLLHAVS-KDNAEALDKIIKDLKEQGYTFK 218 (224)
T ss_pred CHHHHHHHHHcCCcEEeccccCcccCCCCCCCHHHHHHHHHhcCCCC-cEEEEECCC-CCHHHHHHHHHHHHHHCCCEEE
Confidence 566788999999987643322222221 12 222222334 577777742 3346778889999999999999
Q ss_pred eHHHHH
Q 028963 190 DCERLE 195 (201)
Q Consensus 190 ~~~e~~ 195 (201)
+.+|++
T Consensus 219 tl~el~ 224 (224)
T TIGR02884 219 SLDDLM 224 (224)
T ss_pred EhHHcC
Confidence 998863
No 306
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.61 E-value=1.2e+02 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEE
Q 028963 43 LDNTLATVQLCRRASIPVFFT 63 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~ 63 (201)
-+++.+.+++||+.|++||-.
T Consensus 116 s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEE
Confidence 488889999999999999865
No 307
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=22.57 E-value=3.3e+02 Score=20.96 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=33.1
Q ss_pred CCCCEEEECCCCCCCC-----------CCchHHHHHhCCCcEEEEeeccCchhHHHHH
Q 028963 103 AGADEVIEKNTYSAFG-----------NTRLQERLVGMGVEEVIVCGVMTNLCCETTA 149 (201)
Q Consensus 103 ~~~~~vv~K~~~saf~-----------~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta 149 (201)
.++|..+.++--+... ...|+-.+...+++.|+|+|=.-...|.+..
T Consensus 47 ~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav~~l~v~~ivV~GH~~Cgav~Aa~ 104 (190)
T cd00884 47 QPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAVAVLKVEHIVVCGHSDCGGIRALL 104 (190)
T ss_pred CCCCEEEEeccCCcCCcccccccccchhhhHHHHHHHhCCCEEEEeCCCcchHHHHHh
Confidence 5677777666433332 1456667788999999999988777777654
No 308
>PRK07985 oxidoreductase; Provisional
Probab=22.53 E-value=4.2e+02 Score=21.41 Aligned_cols=30 Identities=20% Similarity=0.053 Sum_probs=18.5
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|.. ..-=.+.++.+.++|++|+++
T Consensus 50 k~vlITGas-~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGD-SGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCC-CcHHHHHHHHHHHCCCEEEEe
Confidence 467777754 334456666666777776653
No 309
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=22.53 E-value=95 Score=20.54 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHCCCcEEEE
Q 028963 44 DNTLATVQLCRRASIPVFFT 63 (201)
Q Consensus 44 ~~i~~l~~~ar~~g~~vi~~ 63 (201)
.-..++++.|+++|+||+--
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~ 46 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVED 46 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeC
Confidence 44556778899999998764
No 310
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.51 E-value=3.6e+02 Score=20.63 Aligned_cols=26 Identities=15% Similarity=-0.064 Sum_probs=15.2
Q ss_pred CCCCCCCchHHHHHhCCCcEEEEeecc
Q 028963 114 YSAFGNTRLQERLVGMGVEEVIVCGVM 140 (201)
Q Consensus 114 ~saf~~t~L~~~L~~~gi~~lvi~G~~ 140 (201)
.+.+-+..+...|.++|. +|++++-.
T Consensus 15 ~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 15 AGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 344445566666666776 56665543
No 311
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=22.47 E-value=4.7e+02 Score=22.01 Aligned_cols=69 Identities=17% Similarity=0.024 Sum_probs=48.9
Q ss_pred CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLF 199 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~ 199 (201)
.-.++..+|-..|.| .+-...+...|+++.+..-----.+++..+.+-+.....|+.+.=+++...+..
T Consensus 152 ~g~k~a~vGDgNNv~-nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~ 220 (310)
T COG0078 152 KGLKLAYVGDGNNVA-NSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVK 220 (310)
T ss_pred cCcEEEEEcCcchHH-HHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhC
Confidence 347888999884444 455667778899999986655556778888888777777777766666655443
No 312
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.46 E-value=1.4e+02 Score=22.02 Aligned_cols=25 Identities=0% Similarity=-0.089 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 41 PILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 41 ~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
.+-+.+.+++++.+++|.+++++.-
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TG 51 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTA 51 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 3457788889999999999999863
No 313
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=22.45 E-value=1.8e+02 Score=22.98 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=26.4
Q ss_pred CCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 19 PNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 19 ~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
+...+.++||+|..++.. .....+++.+...++|+|.+-.
T Consensus 94 l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p~ilviN 133 (222)
T cd01885 94 LRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVKPVLVIN 133 (222)
T ss_pred HHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCCEEEEEE
Confidence 344567888888877642 2335566666677888777653
No 314
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.42 E-value=5e+02 Score=22.27 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEe
Q 028963 43 LDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
.+...++++.-.+.|++.|=+.
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe
Confidence 3444555556666788887764
No 315
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=22.41 E-value=1.5e+02 Score=24.79 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.0
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
.+|+|+| .-+-=++||..+.++|++|++++.--
T Consensus 5 ~~vvVIG--gGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIG--GGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred ceEEEEC--CcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4567776 34444899999999999999998433
No 316
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.38 E-value=3.8e+02 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=13.6
Q ss_pred cEEEEeeccC-chhHHHHHHHHHhCCCeEEE
Q 028963 132 EEVIVCGVMT-NLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 132 ~~lvi~G~~T-~~CV~~Ta~~a~~~G~~v~v 161 (201)
++++|+|... ..=-...|+...++|++|++
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~ 37 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFF 37 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEE
Confidence 3455555442 22334444555555555444
No 317
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=22.35 E-value=1.8e+02 Score=21.38 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=33.4
Q ss_pred CeEEEEEeccCccCCC-chhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 23 SSVLLVIDMQNHFSSI-AKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~-~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
+.-+||||--..+.+. .......+.++++..+..|.+++++.+...
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 4568999988876642 233456677788888888999999976554
No 318
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.32 E-value=1.8e+02 Score=21.99 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=20.9
Q ss_pred EEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 133 ~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
+++|+|.. .-+...+..+.+.||+|+++
T Consensus 2 ~vlVtGGt--G~gg~la~~L~~~G~~V~v~ 29 (177)
T PRK08309 2 HALVIGGT--GMLKRVSLWLCEKGFHVSVI 29 (177)
T ss_pred EEEEECcC--HHHHHHHHHHHHCcCEEEEE
Confidence 46788864 45567788888889998875
No 319
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=22.26 E-value=1.6e+02 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=15.5
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
++++|+|...... .+.++...+.|++|+++
T Consensus 16 k~vlItGas~gIG-~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 16 KVAIVTGGNTGLG-QGYAVALAKAGADIIIT 45 (258)
T ss_pred CEEEEeCCCchHH-HHHHHHHHHCCCEEEEE
Confidence 4555555544333 44455555556655554
No 320
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=22.23 E-value=4.9e+02 Score=22.09 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=55.3
Q ss_pred cccccccCCCCCCCEEEECCCCCCCCCC----chHHHHHhCC----C--cEEEEeeccCchhHHHHHHHHHhCCCeEEEe
Q 028963 93 ELLPEIKGLVAGADEVIEKNTYSAFGNT----RLQERLVGMG----V--EEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162 (201)
Q Consensus 93 ~~~~~l~~~~~~~~~vv~K~~~saf~~t----~L~~~L~~~g----i--~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv 162 (201)
..+.++.. ...-+||.-. -+..+.| +|--+.+..| + .+|.++|--. .-+.+.+..+...|.+|+++
T Consensus 109 ~~~~~~a~--~~~vPVINa~-~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~-~v~~Sl~~~~~~~g~~v~~~ 184 (338)
T PRK02255 109 QTVVELAK--YATVPVINGM-SDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDAT-QVCVSLMFIATKMGMDFVHF 184 (338)
T ss_pred HHHHHHHH--hCCCCEEECC-CCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCc-hHHHHHHHHHHhCCCEEEEE
Confidence 34555655 4556677732 2333333 2333333332 3 3899999753 33444455566789999998
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhh
Q 028963 163 TDATATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198 (201)
Q Consensus 163 ~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l 198 (201)
.--.-...++..+.+-+..+..++.+.-+.++.+++
T Consensus 185 ~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav 220 (338)
T PRK02255 185 GPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAV 220 (338)
T ss_pred CCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHh
Confidence 765554555554444444444565555555554444
No 321
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=22.21 E-value=2.1e+02 Score=22.70 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCCCEEEECC---CCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 103 AGADEVIEKN---TYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 103 ~~~~~vv~K~---~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
.+++.++... ...++++.-+....+.+|+.-+|+-|...| ..+..+.||.|+--.
T Consensus 74 ~pGdVlVid~~g~~~~a~~G~~~a~~a~~~G~~GiVidG~vRD------~~~i~~l~~Pvfa~g 131 (222)
T TIGR02798 74 QEGDVVVAACTAECEDGYFGDLLATSFQARGCRGLIIDAGVRD------VRDLTEMNFPVWSKA 131 (222)
T ss_pred CCCeEEEEECCCCcceEeehHHHHHHHHHCCCeEEEEecccCC------HHHHhhCCCceEEee
Confidence 5677766433 345677888888899999999999999888 455566777776554
No 322
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=22.06 E-value=2.7e+02 Score=21.19 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=34.4
Q ss_pred CCCCEEEECCCCCCCC------CCchHHHHHhCCCcEEEEeeccCchhHHHHHH
Q 028963 103 AGADEVIEKNTYSAFG------NTRLQERLVGMGVEEVIVCGVMTNLCCETTAR 150 (201)
Q Consensus 103 ~~~~~vv~K~~~saf~------~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~ 150 (201)
.++|..+.++--|... ...|+-.+...|+++|+|+|=.-..-|.++..
T Consensus 46 ~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~~IvV~GHs~CGav~a~~~ 99 (182)
T cd00883 46 LPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVKHIIVCGHYGCGGVKAALT 99 (182)
T ss_pred CCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCCEEEEecCCCchHHHHHHc
Confidence 5788888777555442 23455556678999999999888777777653
No 323
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=22.05 E-value=3.3e+02 Score=23.24 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=39.1
Q ss_pred CCchHHHHHhCCCcEEEEeeccC---chhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 119 NTRLQERLVGMGVEEVIVCGVMT---NLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G~~T---~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
+.++.+.+-+.|++-|||.|+-. ..........+.++|..|++.+-|-.+
T Consensus 251 ~~~ll~~~~~~g~~GlVl~g~G~Gn~p~~~~~al~~a~~~GipVV~~Sr~~~G 303 (349)
T TIGR00520 251 PPLIVNAVLDAGAKGIVLAGVGNGSLSAAGLKVNETAAKLGVPIVRSSRVPDG 303 (349)
T ss_pred CHHHHHHHHhCCCCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEEccCCCC
Confidence 45666667778999999998864 335677788899999999999998544
No 324
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=21.98 E-value=3.6e+02 Score=22.95 Aligned_cols=40 Identities=18% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCC
Q 028963 123 QERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDAT 166 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~ 166 (201)
.++|++.----|+|-|+.+ ...++.+.+.|.+.++++..-
T Consensus 205 i~~l~~~~~~PvivKgv~~----~~dA~~a~~~G~d~I~vsnhg 244 (344)
T cd02922 205 IKWLRKHTKLPIVLKGVQT----VEDAVLAAEYGVDGIVLSNHG 244 (344)
T ss_pred HHHHHHhcCCcEEEEcCCC----HHHHHHHHHcCCCEEEEECCC
Confidence 3444444334566666632 566677777777777776643
No 325
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=21.96 E-value=2e+02 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=31.5
Q ss_pred CeEEEEEeccCccCC-C-c--hhHHHHH-HHHHHHHHHCCCcEEEEecccCC
Q 028963 23 SSVLLVIDMQNHFSS-I-A--KPILDNT-LATVQLCRRASIPVFFTRHCHKS 69 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~-~-~--~~~i~~i-~~l~~~ar~~g~~vi~~~~~~~~ 69 (201)
+.-|||||.-.-... . . ...+..+ ..|-..|++.++|||.+.+.++.
T Consensus 305 ~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~ 356 (421)
T TIGR03600 305 GLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLLAQLNRG 356 (421)
T ss_pred CCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcc
Confidence 356999998765543 1 1 1223344 44666789999999999987664
No 326
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.92 E-value=1.6e+02 Score=24.59 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=26.4
Q ss_pred HhCCCcEEEEeeccCchhHHHHHHH-HH-hCCCeEEEecC
Q 028963 127 VGMGVEEVIVCGVMTNLCCETTARD-AF-VRGFRVFFSTD 164 (201)
Q Consensus 127 ~~~gi~~lvi~G~~T~~CV~~Ta~~-a~-~~G~~v~vv~D 164 (201)
+..|+++|+++|-....|++...+. .+ .+||++++..-
T Consensus 239 ~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 239 AHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred HHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 3468999999977777777755443 33 67998885543
No 327
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.88 E-value=1.4e+02 Score=23.07 Aligned_cols=25 Identities=4% Similarity=0.010 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
--+++.+.++.||++|.|||...-.
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3678899999999999999998744
No 328
>PLN02412 probable glutathione peroxidase
Probab=21.85 E-value=2.2e+02 Score=21.12 Aligned_cols=40 Identities=5% Similarity=-0.003 Sum_probs=32.5
Q ss_pred EEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEec
Q 028963 26 LLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65 (201)
Q Consensus 26 LlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~ 65 (201)
.++|.....+++......+.++++.+.++..|+.|+-+.-
T Consensus 31 ~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 31 VLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 4666666778887777788999999999999998888853
No 329
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=21.79 E-value=4.5e+02 Score=21.86 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=37.4
Q ss_pred CchHHHHHhCCCcEEEEeecc---CchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 120 TRLQERLVGMGVEEVIVCGVM---TNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 120 t~L~~~L~~~gi~~lvi~G~~---T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.++.+.+- .+++-|||.|+- .+.-+......+.++|..|++.+.|..+
T Consensus 215 ~~~l~~~~-~~~~GlVl~~~G~Gn~~~~~~~~l~~a~~~gipVV~~sr~~~G 265 (313)
T PF00710_consen 215 AELLDAAL-AGAKGLVLEGYGAGNVPPALLEALARAVERGIPVVVTSRCPSG 265 (313)
T ss_dssp THHHHHHH-TT-SEEEEEEBTTTBSSHHHHHHHHHHHHTTSEEEEEESSSCS
T ss_pred HHHHHHHh-ccCCEEEEeccCCCCCCHHHHHHHHHHHhcCceEEEecccccC
Confidence 34444444 789999999997 4667778888999999999999998864
No 330
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.79 E-value=2.6e+02 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=10.5
Q ss_pred CCCCCchHHHHHhCCCcEEEEee
Q 028963 116 AFGNTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 116 af~~t~L~~~L~~~gi~~lvi~G 138 (201)
.+-+..+...|.++|.+ |++++
T Consensus 21 g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 21 SGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred CcHHHHHHHHHHHCCCE-EEEEe
Confidence 33344555555555543 44444
No 331
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=21.76 E-value=1.3e+02 Score=23.06 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=26.9
Q ss_pred EEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 27 LVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 27 lviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
|+.|+=.-+++....+.+...+.++.+++.|++++.+.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aT 38 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVT 38 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEc
Confidence 35566666665544566677778888999999888764
No 332
>PRK07476 eutB threonine dehydratase; Provisional
Probab=21.75 E-value=4.3e+02 Score=21.93 Aligned_cols=59 Identities=14% Similarity=-0.026 Sum_probs=31.0
Q ss_pred HHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
+.+.|.++=+|+--..|.| .+.|..+...|++++++.+-..+. .-...|+..|++|+..
T Consensus 61 a~~~~~~~gvv~aSsGN~g-~alA~~a~~~G~~~~i~vp~~~~~------~k~~~~~~~GA~V~~~ 119 (322)
T PRK07476 61 LSAQERARGVVTASTGNHG-RALAYAARALGIRATICMSRLVPA------NKVDAIRALGAEVRIV 119 (322)
T ss_pred hhhhhhCCeEEEECCChHH-HHHHHHHHHhCCCEEEEeCCCCCH------HHHHHHHHcCCEEEEE
Confidence 3344444413333444444 455666667888877776554331 1244455666776543
No 333
>PLN02780 ketoreductase/ oxidoreductase
Probab=21.74 E-value=3.4e+02 Score=22.42 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=16.0
Q ss_pred CCCCCCCchHHHHHhCCCcEEEEeeccC
Q 028963 114 YSAFGNTRLQERLVGMGVEEVIVCGVMT 141 (201)
Q Consensus 114 ~saf~~t~L~~~L~~~gi~~lvi~G~~T 141 (201)
-+..-+..+...|.++|. +|++++-..
T Consensus 61 As~GIG~alA~~La~~G~-~Vil~~R~~ 87 (320)
T PLN02780 61 PTDGIGKGFAFQLARKGL-NLVLVARNP 87 (320)
T ss_pred CCcHHHHHHHHHHHHCCC-CEEEEECCH
Confidence 333445667777777776 466666543
No 334
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.71 E-value=4.9e+02 Score=21.94 Aligned_cols=65 Identities=15% Similarity=-0.099 Sum_probs=40.3
Q ss_pred HHhCCCcEEEEeeccCch-hHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 126 LVGMGVEEVIVCGVMTNL-CCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 126 L~~~gi~~lvi~G~~T~~-CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
..+.|++.|-|+--.++. -+...+..+.++|++|.+.--.+...+++.-....+.+...++..+.
T Consensus 96 a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 96 AYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEE
Confidence 345688877766555543 34567777788888876544444455666666666666666665543
No 335
>PLN02494 adenosylhomocysteinase
Probab=21.68 E-value=2.8e+02 Score=24.88 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=33.8
Q ss_pred CchHHHHHhCCC----cEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 120 TRLQERLVGMGV----EEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 120 t~L~~~L~~~gi----~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
+-++.++|..++ ++++|+|.- .|=...|.-+...|.+|+++.
T Consensus 239 S~~d~i~r~t~i~LaGKtVvViGyG--~IGr~vA~~aka~Ga~VIV~e 284 (477)
T PLN02494 239 SLPDGLMRATDVMIAGKVAVICGYG--DVGKGCAAAMKAAGARVIVTE 284 (477)
T ss_pred cHHHHHHHhcCCccCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEe
Confidence 357888888777 899999987 577888888888899888763
No 336
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.60 E-value=5.1e+02 Score=22.03 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=7.6
Q ss_pred hHHHHHhCCCcEEEEeec
Q 028963 122 LQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 122 L~~~L~~~gi~~lvi~G~ 139 (201)
+...|++.|++..++-|+
T Consensus 46 v~~~L~~~~~~~~~~~~v 63 (376)
T cd08193 46 LLASLEAAGIEVTVFDDV 63 (376)
T ss_pred HHHHHHHcCCeEEEECCC
Confidence 334444445443333333
No 337
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=21.59 E-value=3.6e+02 Score=20.28 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHhCCC----cEEEEeeccCchhHHHHHHHHHhCCCeEEEec
Q 028963 123 QERLVGMGV----EEVIVCGVMTNLCCETTARDAFVRGFRVFFST 163 (201)
Q Consensus 123 ~~~L~~~gi----~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~ 163 (201)
.+.|++.|+ ++++|.|-.-... ...++.+.+.|++|+++.
T Consensus 16 ~~~l~~~~~~l~~~~vlVlGgtG~iG-~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 16 GKALELMGKDLKGKTAVVLGGTGPVG-QRAAVLLAREGARVVLVG 59 (194)
T ss_pred HHHHHHhCcCCCCCEEEEECCCCHHH-HHHHHHHHHCCCEEEEEc
Confidence 444554333 5788888765544 566777778899998874
No 338
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=21.53 E-value=4.5e+02 Score=21.39 Aligned_cols=76 Identities=8% Similarity=-0.065 Sum_probs=49.0
Q ss_pred CCCchHHHHHhCCCcEEEEeeccCchh------HHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 118 GNTRLQERLVGMGVEEVIVCGVMTNLC------CETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 118 ~~t~L~~~L~~~gi~~lvi~G~~T~~C------V~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
++..+.+.+++.|...+.-.--.-|.. +...++.....| .+++.-|.. .+.+.-...+..++.+|-+++|.
T Consensus 187 ~n~~~~~~l~~~G~~~v~Wsvd~~Dw~~~~~~~i~~~v~~~~~~G-~IILmHd~~--~T~~aL~~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 187 FNDNVVQIAADLQMGTIMWTVDTIDWKNPSPSVMVNRVLSKIHPG-AMVLMHPTA--SSTEGLEEMITIIKEKGYKIGTI 263 (268)
T ss_pred CCHHHHHHHHHCCCeEEEeccCCCCCCCCCHHHHHHHHHhcCCCC-cEEEEcCCc--cHHHHHHHHHHHHHHCCCEEEeH
Confidence 356788899999998754332222221 122333333344 566777753 34567888899999999999999
Q ss_pred HHHHH
Q 028963 192 ERLEA 196 (201)
Q Consensus 192 ~e~~~ 196 (201)
+|+++
T Consensus 264 ~ell~ 268 (268)
T TIGR02873 264 TELLD 268 (268)
T ss_pred HHhhC
Confidence 99863
No 339
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=21.43 E-value=61 Score=27.53 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCcEEEEecc
Q 028963 47 LATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 47 ~~l~~~ar~~g~~vi~~~~~ 66 (201)
...+++|+++|+||+-+...
T Consensus 49 ~~~idaAHknGV~Vlgti~~ 68 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIF 68 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEe
Confidence 56788999999999887643
No 340
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=21.39 E-value=1.9e+02 Score=22.36 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=5.8
Q ss_pred CCchHHHHHhCCC
Q 028963 119 NTRLQERLVGMGV 131 (201)
Q Consensus 119 ~t~L~~~L~~~gi 131 (201)
+..+...|.++|.
T Consensus 18 G~~ia~~l~~~G~ 30 (248)
T TIGR01832 18 GQGIAVGLAEAGA 30 (248)
T ss_pred HHHHHHHHHHCCC
Confidence 3344444444443
No 341
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=21.38 E-value=1.4e+02 Score=24.30 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 40 KPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 40 ~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
..-..++.++++.|.+.++|||+..+..-
T Consensus 81 ~~g~rKa~R~~~lA~~~~lPvV~lvDtpG 109 (256)
T PRK12319 81 PEGYRKALRLMKQAEKFGRPVVTFINTAG 109 (256)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 45688999999999999999999988743
No 342
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.37 E-value=1.5e+02 Score=18.66 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEe
Q 028963 43 LDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 43 i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
-+.+.++++.+|++|.++|.+.
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4567778889999999998765
No 343
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=21.37 E-value=1.6e+02 Score=23.46 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred CeEEEEEeccCccCCCc------hhHHHH-HHHHHHHHHHCCCcEEEEecccC
Q 028963 23 SSVLLVIDMQNHFSSIA------KPILDN-TLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~------~~~i~~-i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
+.-+||||--..+.... ...+.. +..|...+++.+++|+.+.+...
T Consensus 140 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~ 192 (271)
T cd01122 140 GIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRR 192 (271)
T ss_pred CceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecccC
Confidence 45689999876665331 122334 34466778999999999987765
No 344
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=21.36 E-value=2.5e+02 Score=24.09 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=35.9
Q ss_pred CCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
...+.+++|-+++|-.. .....+..+++.||++|+-++.++..+.
T Consensus 75 ~~~a~~~iDa~~g~G~~--a~~~am~~aie~Ak~~Gia~vav~ns~H 119 (349)
T COG2055 75 EAPAVAVLDADGGFGQV--AAKKAMELAIEKAKQHGIAAVAVRNSNH 119 (349)
T ss_pred ecCcEEEEeCCCCcchH--HHHHHHHHHHHHHHHhCeeEEEEecCCc
Confidence 45789999999998542 3456777899999999999999987654
No 345
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.29 E-value=4e+02 Score=21.77 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=16.5
Q ss_pred chHHHHHh-CCCcEEEEeeccCchhHH
Q 028963 121 RLQERLVG-MGVEEVIVCGVMTNLCCE 146 (201)
Q Consensus 121 ~L~~~L~~-~gi~~lvi~G~~T~~CV~ 146 (201)
.+.++|-+ .|++-|++.|-..+.+-+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~L 54 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLL 54 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccC
Confidence 44555666 777777777776665544
No 346
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=21.24 E-value=3.8e+02 Score=23.16 Aligned_cols=49 Identities=10% Similarity=-0.091 Sum_probs=28.1
Q ss_pred EeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 136 VCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 136 i~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
|++.++..--.+.|..+..+|++++|+.....+. . -+..|+..|++|+-
T Consensus 119 vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~--~----k~~~i~~~GA~Vi~ 167 (399)
T PRK08206 119 FATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSE--E----RVDAIRALGAECII 167 (399)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCH--H----HHHHHHHcCCEEEE
Confidence 3444555555566677778888888777765441 1 12234555666653
No 347
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=21.14 E-value=1.6e+02 Score=24.64 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCCCeEEEEEeccCccCCC-----c---h---hHHHHHHHHHHHHHHCCCcEEEEecccCCC
Q 028963 20 NPKSSVLLVIDMQNHFSSI-----A---K---PILDNTLATVQLCRRASIPVFFTRHCHKSP 70 (201)
Q Consensus 20 ~~~~~aLlviD~Q~~f~~~-----~---~---~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~ 70 (201)
...+.-|||||=-..+... + + .+..-+..|...+++++++|+.+.+....+
T Consensus 188 ~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~ 249 (313)
T TIGR02238 188 SEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADP 249 (313)
T ss_pred hccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecC
Confidence 3346789999987754321 1 0 123344567888999999999999887654
No 348
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=21.09 E-value=2.1e+02 Score=24.19 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=31.8
Q ss_pred HHHHHhCCCcEEEEeeccC---------------chhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 123 QERLVGMGVEEVIVCGVMT---------------NLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 123 ~~~L~~~gi~~lvi~G~~T---------------~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
.+.+.+.||+.|+|.|+.. +.+|..+.+...+.=-++.|+.|.|-+
T Consensus 57 ~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc 117 (320)
T cd04824 57 LRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLC 117 (320)
T ss_pred HHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 3455679999999999962 234555555555444479999998854
No 349
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=21.08 E-value=1.5e+02 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=22.2
Q ss_pred EEEeeccCchhHHHHHHHHHhCCCeEEEecCC
Q 028963 134 VIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165 (201)
Q Consensus 134 lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da 165 (201)
|+|+| .-+-=++||..+.++|++|++++..
T Consensus 3 vvIIG--aGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 3 VIVVG--AGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred EEEEC--CCHHHHHHHHHHHHCCCeEEEEecc
Confidence 55555 2344568899999999999999763
No 350
>PRK06949 short chain dehydrogenase; Provisional
Probab=21.05 E-value=4e+02 Score=20.59 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=12.0
Q ss_pred CCCCCCchHHHHHhCCCcEEEEeec
Q 028963 115 SAFGNTRLQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 115 saf~~t~L~~~L~~~gi~~lvi~G~ 139 (201)
+.+-+..+...|.++|. +|++++-
T Consensus 18 sg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 18 SSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 33444555555655555 3444443
No 351
>PRK05866 short chain dehydrogenase; Provisional
Probab=21.04 E-value=4.5e+02 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=12.5
Q ss_pred CCCCCCchHHHHHhCCCcEEEEeec
Q 028963 115 SAFGNTRLQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 115 saf~~t~L~~~L~~~gi~~lvi~G~ 139 (201)
+.+-+..+...|.++|. +|++++-
T Consensus 49 sggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 49 SSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 34445566666666654 3444443
No 352
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=20.97 E-value=4.6e+02 Score=21.30 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=33.4
Q ss_pred hHHHHHhCCC----cEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCC
Q 028963 122 LQERLVGMGV----EEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168 (201)
Q Consensus 122 L~~~L~~~gi----~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~ 168 (201)
+.+.++.++. .+++|.|+- .-=..+++-+.+.|.+|+-|+|..++
T Consensus 25 ~~~~~~~~~~~l~g~~vaIqGfG--nVG~~~a~~L~e~GakvvaVsD~~G~ 73 (254)
T cd05313 25 VEEMLKDRNETLKGKRVAISGSG--NVAQYAAEKLLELGAKVVTLSDSKGY 73 (254)
T ss_pred HHHHHHhcCCCcCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEECCCce
Confidence 4455555544 599999993 34457788888999999999996655
No 353
>PRK07774 short chain dehydrogenase; Provisional
Probab=20.95 E-value=3.9e+02 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.028 Sum_probs=8.0
Q ss_pred CCCCCchHHHHHhCCC
Q 028963 116 AFGNTRLQERLVGMGV 131 (201)
Q Consensus 116 af~~t~L~~~L~~~gi 131 (201)
.+-+..+...|.++|.
T Consensus 16 g~iG~~la~~l~~~g~ 31 (250)
T PRK07774 16 GGIGQAYAEALAREGA 31 (250)
T ss_pred chHHHHHHHHHHHCCC
Confidence 3334455555555553
No 354
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=20.95 E-value=1.9e+02 Score=25.27 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=33.6
Q ss_pred ccCCCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEe
Q 028963 16 KRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTR 64 (201)
Q Consensus 16 ~~~~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~ 64 (201)
..+.+-+..|++||..-|=--. ----+.++++++.|++.|++||.=.
T Consensus 193 eal~DENT~AivviNP~NPcGn--Vys~~HL~kiae~A~klgi~vIaDE 239 (447)
T KOG0259|consen 193 EALADENTVAIVVINPNNPCGN--VYSEDHLKKIAETAKKLGIMVIADE 239 (447)
T ss_pred HHhhccCeeEEEEeCCCCCCcc--cccHHHHHHHHHHHHHhCCeEEehh
Confidence 3446667789999988873111 0125788899999999999988644
No 355
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.92 E-value=3.9e+02 Score=20.49 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=15.3
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEE
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~v 161 (201)
++++|+|..... -.+.+....++|++|++
T Consensus 7 ~~vlitGasg~i-G~~l~~~l~~~g~~v~~ 35 (252)
T PRK06077 7 KVVVVTGSGRGI-GRAIAVRLAKEGSLVVV 35 (252)
T ss_pred cEEEEeCCCChH-HHHHHHHHHHCCCEEEE
Confidence 456666644332 34445555566666554
No 356
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=20.90 E-value=2.8e+02 Score=23.42 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 40 KPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 40 ~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
..-..++.++++.|.+.++|||+..+.+-
T Consensus 134 p~g~rKa~R~m~lA~~f~iPvVtlvDTpG 162 (316)
T TIGR00513 134 PEGYRKALRLMKMAERFKMPIITFIDTPG 162 (316)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 45688999999999999999999987743
No 357
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.77 E-value=3.9e+02 Score=20.43 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=11.1
Q ss_pred CCCCCchHHHHHhCCCcEEEEee
Q 028963 116 AFGNTRLQERLVGMGVEEVIVCG 138 (201)
Q Consensus 116 af~~t~L~~~L~~~gi~~lvi~G 138 (201)
.+-+..+.+.|.++|. +|++++
T Consensus 15 g~iG~~~a~~l~~~G~-~vi~~~ 36 (253)
T PRK08217 15 QGLGRAMAEYLAQKGA-KLALID 36 (253)
T ss_pred chHHHHHHHHHHHCCC-EEEEEe
Confidence 3334555566666665 344443
No 358
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=20.71 E-value=4.9e+02 Score=23.34 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=41.3
Q ss_pred chHHHHHhCCCcEEEEeeccCchhHHHHHHHHH-------------------------hCCCeEEEecCCCCCCCHHHHH
Q 028963 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAF-------------------------VRGFRVFFSTDATATSDLELHE 175 (201)
Q Consensus 121 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~-------------------------~~G~~v~vv~Da~~~~~~~~h~ 175 (201)
.+.+.++..+++ .|+|+++..-..+|+.... ..|-+|.+|.|-+++-. ...
T Consensus 335 ~la~~l~~~~~D--~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~~~ieG~~~~G~rVlIVDDViTTGg--Si~ 410 (477)
T PRK05500 335 AYAEILKNLTFD--RIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTRRLIEGNFHPGETVVVVDDILITGK--SVM 410 (477)
T ss_pred HHHHHhccCCCC--EEEEEccchHHHHHHHHHHhCCCEEEEecCcCccCCCceEecCCCCcCEEEEEEeccccCH--HHH
Confidence 344555555666 5899999999999888653 23457888888887753 334
Q ss_pred HHHHHHhhcceEE
Q 028963 176 ATLKNLAYGFAYL 188 (201)
Q Consensus 176 ~al~~l~~~~~~v 188 (201)
.+++.++..|++|
T Consensus 411 eaie~l~~aG~~V 423 (477)
T PRK05500 411 EGAEKLKSAGLNV 423 (477)
T ss_pred HHHHHHHHCCCEE
Confidence 4444455444443
No 359
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=20.71 E-value=1.6e+02 Score=21.91 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
--+.+.++++.|+++|.+||.+.....
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 356788889999999999999976543
No 360
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.68 E-value=5.7e+02 Score=22.30 Aligned_cols=61 Identities=11% Similarity=-0.069 Sum_probs=41.0
Q ss_pred CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCC---CCCCCHHHHHHHHHHHhhcceEEeeHH
Q 028963 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA---TATSDLELHEATLKNLAYGFAYLFDCE 192 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da---~~~~~~~~h~~al~~l~~~~~~v~~~~ 192 (201)
..++++|.|--.-.|- .|..+..+|.+|+++.-. ....+++..+...+.++..+.++....
T Consensus 171 ~~~~vvVIGgG~ig~E--~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~ 234 (466)
T PRK07818 171 LPKSIVIAGAGAIGME--FAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGT 234 (466)
T ss_pred CCCeEEEECCcHHHHH--HHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECC
Confidence 3478999886544333 344556789999987532 344567777777888888888777544
No 361
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.66 E-value=4e+02 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.1
Q ss_pred cEEEEeeccCchhHHHHHHHHHhCCCeEEE
Q 028963 132 EEVIVCGVMTNLCCETTARDAFVRGFRVFF 161 (201)
Q Consensus 132 ~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~v 161 (201)
+++.|.|+- ..=...++.+.+.|.+|++
T Consensus 29 k~v~I~G~G--~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 29 KTVAVQGLG--KVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCEEEE
Confidence 689999996 4556788889999999884
No 362
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=20.62 E-value=2.3e+02 Score=19.77 Aligned_cols=42 Identities=5% Similarity=-0.039 Sum_probs=33.9
Q ss_pred EEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecc
Q 028963 25 VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHC 66 (201)
Q Consensus 25 aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~ 66 (201)
.++++-.-..+|+.....++.++++.+.++..|+.+|.+...
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 456666667788888888999999999999899988888643
No 363
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=20.59 E-value=3.7e+02 Score=20.09 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=38.6
Q ss_pred CCcEEEEeeccCchhHHH-HHHHHH--hCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEee
Q 028963 130 GVEEVIVCGVMTNLCCET-TARDAF--VRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFD 190 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~-Ta~~a~--~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~ 190 (201)
++++++++|......-.. ....+. ...|+++++.|+=--.+++.-+..+..+......++|
T Consensus 2 ~v~~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt 65 (175)
T PF13506_consen 2 HVDRLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVT 65 (175)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEE
Confidence 456566666644433332 222222 3679999999998888888888888888753333443
No 364
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=20.52 E-value=1.2e+02 Score=17.15 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=16.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHC
Q 028963 35 FSSIAKPILDNTLATVQLCRRA 56 (201)
Q Consensus 35 f~~~~~~~i~~i~~l~~~ar~~ 56 (201)
|.+...++-.++.+|+++++.+
T Consensus 15 yYP~ESELskr~rrLIRaa~k~ 36 (44)
T PF08134_consen 15 YYPTESELSKRIRRLIRAARKQ 36 (44)
T ss_pred ecCcHHHHHHHHHHHHHHHHHH
Confidence 4444566788999999998763
No 365
>PRK14072 6-phosphofructokinase; Provisional
Probab=20.48 E-value=5e+02 Score=22.74 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCC--CcEEEEecccCCCCCccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCC--C
Q 028963 42 ILDNTLATVQLCRRAS--IPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSA--F 117 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~sa--f 117 (201)
+=..|..+++.+..+| ..|+-+++.+..--+ ...........+-+..+.. .++- .+--.++.. |
T Consensus 18 mNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~---------~~~~~l~~~~~~~i~~i~~--~gGt-~LgssR~~~~~~ 85 (416)
T PRK14072 18 INASAAGVIEEARKHKKIGKVYGARNGIIGILD---------EDLIDLSKESDEALAALAH--TPSG-ALGSCRYKLKSL 85 (416)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEEecChHHhcC---------CCeeeCChhhHhHHHHHhc--CCCe-EeccCCCCCccc
Confidence 3345667888888888 788888866542100 0000000000011111222 2332 333334443 3
Q ss_pred C-C----CchHHHHHhCCCcEEEEeeccCch
Q 028963 118 G-N----TRLQERLVGMGVEEVIVCGVMTNL 143 (201)
Q Consensus 118 ~-~----t~L~~~L~~~gi~~lvi~G~~T~~ 143 (201)
. + ....+.|++.+|+.+|+.|-....
T Consensus 86 ~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~ 116 (416)
T PRK14072 86 EEDRAEYERLLEVFKAHDIGYFFYNGGNDSM 116 (416)
T ss_pred ccChHHHHHHHHHHHHcCCCEEEEECChHHH
Confidence 2 1 245567889999999999987654
No 366
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=20.46 E-value=5.1e+02 Score=22.59 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=37.0
Q ss_pred HhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeH
Q 028963 127 VGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 127 ~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
++.|.+.+|+.--+-+.+ .++|..+...|++++|+-... +.+.....+..|+..|++|+..
T Consensus 106 ~~~G~~~vI~etgsGnhG-~A~A~aaa~~Gl~~~I~m~~~---d~~~q~~nv~~mr~~GAeVi~v 166 (402)
T PRK13028 106 KRMGKKRLIAETGAGQHG-VATATAAALFGLECEIYMGEV---DIERQHPNVFRMKLLGAEVVPV 166 (402)
T ss_pred HHcCCCeEEEecCcHHHH-HHHHHHHHHcCCCEEEEECCC---cchhhHHHHHHHHHcCCEEEEE
Confidence 346777776533333333 456667778899988886543 2222334566777788887643
No 367
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.44 E-value=3.1e+02 Score=19.07 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=38.7
Q ss_pred EEEEeeccCch-----hHHHHHHHHHhCCCeEEEecCCCCCCC-----HHHHHHHHHHHhhc-ceEEe
Q 028963 133 EVIVCGVMTNL-----CCETTARDAFVRGFRVFFSTDATATSD-----LELHEATLKNLAYG-FAYLF 189 (201)
Q Consensus 133 ~lvi~G~~T~~-----CV~~Ta~~a~~~G~~v~vv~Da~~~~~-----~~~h~~al~~l~~~-~~~v~ 189 (201)
.+-|+|+.+-. -+..-+..+.+.|.+++-++-|+...+ +. .+...+.++.. +..|+
T Consensus 37 ~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-~~~~~~~I~~~~gi~VV 103 (107)
T PF08821_consen 37 DVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-IDEIKKIIEEKFGIEVV 103 (107)
T ss_pred CeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-HHHHHHHHHHHhCCCEe
Confidence 48899997777 356666777889999999999998733 22 44444555544 44554
No 368
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.44 E-value=2e+02 Score=22.73 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=5.8
Q ss_pred CCchHHHHHhCCC
Q 028963 119 NTRLQERLVGMGV 131 (201)
Q Consensus 119 ~t~L~~~L~~~gi 131 (201)
+..+.+.|.++|.
T Consensus 14 G~~la~~l~~~G~ 26 (274)
T PRK05693 14 GRALADAFKAAGY 26 (274)
T ss_pred HHHHHHHHHHCCC
Confidence 3444444444443
No 369
>PRK10864 putative methyltransferase; Provisional
Probab=20.42 E-value=5.5e+02 Score=21.96 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=36.3
Q ss_pred CchHHHHHhCC--CcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCCCCCHH
Q 028963 120 TRLQERLVGMG--VEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLE 172 (201)
Q Consensus 120 t~L~~~L~~~g--i~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~~~~~~ 172 (201)
.++.++|.... ---|+|-|+....=+-+-+|.|...|++-+++.+.+...++.
T Consensus 185 ~~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~~~~~~~~k 239 (346)
T PRK10864 185 TDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDAALLESGA 239 (346)
T ss_pred CCHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEECCCCCCCchh
Confidence 35666665432 125677788888888888888888888877777766444443
No 370
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=20.35 E-value=1.2e+02 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=34.3
Q ss_pred CeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 23 SSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 23 ~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
..+++++|-+++|-. -.....+...++.||++|+-++.++..+.
T Consensus 73 ~~a~~~vDg~~g~G~--~~~~~A~~~aiekA~~~Gia~v~vrns~H 116 (335)
T PF02615_consen 73 TPASAVVDGDNGFGQ--VAAKFAMELAIEKAKEHGIAAVAVRNSNH 116 (335)
T ss_dssp ETTEEEEEETTBBHH--HHHHHHHHHHHHHHHHHSEEEEEEEEEE-
T ss_pred cCeEEEEECCCCccH--HHHHHHHHHHHHHHHHcCEEEEEEecCCC
Confidence 467899999998742 22456777899999999999999987665
No 371
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=20.30 E-value=1.9e+02 Score=27.53 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCCCCCccccccccCCCccccCC-----CCccccccccCCCCCCCEEEECCCCCC
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGT-----ADAELLPEIKGLVAGADEVIEKNTYSA 116 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~g~~~~~~l~~~~~~~~~vv~K~~~sa 116 (201)
+=..|..+++.+...|..|+.+++.+.. +..|. -.|+-+..+.. .++ .++--.++..
T Consensus 18 mNaaIravvr~a~~~g~~V~gi~~Gy~G---------------L~~g~~~i~~l~~~~V~~i~~--~GG-T~LGTsR~~~ 79 (762)
T cd00764 18 MNAAVRAVVRMGIYVGAKVFFVYEGYEG---------------LVKGGDYIKQAEWESVSNWLQ--EGG-TIIGSARCKE 79 (762)
T ss_pred HhHHHHHHHHHHHHCCCEEEEEecCHHH---------------HhCCCCCceeCCHHHHHHHHh--CCC-CcccCCCCCc
Confidence 3345666777888889999988876542 11111 01111222222 233 2344445555
Q ss_pred CCC----CchHHHHHhCCCcEEEEeeccCch
Q 028963 117 FGN----TRLQERLVGMGVEEVIVCGVMTNL 143 (201)
Q Consensus 117 f~~----t~L~~~L~~~gi~~lvi~G~~T~~ 143 (201)
|.. ....+.|+++||+.|+++|-.-..
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl 110 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSL 110 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 642 134567889999999999987654
No 372
>PRK08017 oxidoreductase; Provisional
Probab=20.26 E-value=2.1e+02 Score=22.21 Aligned_cols=25 Identities=16% Similarity=-0.036 Sum_probs=14.5
Q ss_pred CCCCCCCchHHHHHhCCCcEEEEeec
Q 028963 114 YSAFGNTRLQERLVGMGVEEVIVCGV 139 (201)
Q Consensus 114 ~saf~~t~L~~~L~~~gi~~lvi~G~ 139 (201)
.+.+-+..+.+.|.++|. +|++++-
T Consensus 10 asg~IG~~la~~l~~~g~-~v~~~~r 34 (256)
T PRK08017 10 CSSGIGLEAALELKRRGY-RVLAACR 34 (256)
T ss_pred CCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 344556667777777775 3444443
No 373
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=20.24 E-value=2.2e+02 Score=25.25 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCeEEEEEeccCccCCC--------chhHHHHHHHHHHHHHHCCCcEEEEecccC
Q 028963 22 KSSVLLVIDMQNHFSSI--------AKPILDNTLATVQLCRRASIPVFFTRHCHK 68 (201)
Q Consensus 22 ~~~aLlviD~Q~~f~~~--------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~ 68 (201)
.+..+||||-.+.+... ..++.+-+..|.+.+++.|++++.+.|...
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 35679999977765421 123445566788889999999999977544
No 374
>PRK10349 carboxylesterase BioH; Provisional
Probab=20.21 E-value=4.1e+02 Score=20.49 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=45.4
Q ss_pred CCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHh--CCCeEEEecCCCCCC---CHHHHHHHHHHHhh
Q 028963 119 NTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFV--RGFRVFFSTDATATS---DLELHEATLKNLAY 183 (201)
Q Consensus 119 ~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~--~G~~v~vv~Da~~~~---~~~~h~~al~~l~~ 183 (201)
..++.+.|.+..+.+++|.|-.-..+-...+..+.+ .+.+++++.+|---. .++.....+..+++
T Consensus 185 ~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 185 TVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQ 254 (256)
T ss_pred hCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhc
Confidence 345667788888999999998888776766666555 378899988876443 34555555555543
No 375
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=20.21 E-value=5.3e+02 Score=21.69 Aligned_cols=60 Identities=20% Similarity=0.071 Sum_probs=39.6
Q ss_pred CCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCC--C--CCHHHHHHHHHHHhhcceEEeeH
Q 028963 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATA--T--SDLELHEATLKNLAYGFAYLFDC 191 (201)
Q Consensus 130 gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~--~--~~~~~h~~al~~l~~~~~~v~~~ 191 (201)
..++++|.|-- .--..+|..+..+|.+|+++...-. . .+++..+...+.++..+.++...
T Consensus 140 ~~~~vvViGgG--~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~ 203 (377)
T PRK04965 140 DAQRVLVVGGG--LIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLK 203 (377)
T ss_pred cCCeEEEECCC--HHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEEC
Confidence 45688888843 3334567777889999999965432 1 24555666677777777776643
No 376
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.12 E-value=1.8e+02 Score=21.31 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEeccc
Q 028963 42 ILDNTLATVQLCRRASIPVFFTRHCH 67 (201)
Q Consensus 42 ~i~~i~~l~~~ar~~g~~vi~~~~~~ 67 (201)
--+.+.+.++.|+++|.++|.+....
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46778888999999999999997643
No 377
>PRK15138 aldehyde reductase; Provisional
Probab=20.10 E-value=3.9e+02 Score=22.96 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=14.0
Q ss_pred CCcEEEEeeccCch---hHHHHHHHHHhCCCeEEE
Q 028963 130 GVEEVIVCGVMTNL---CCETTARDAFVRGFRVFF 161 (201)
Q Consensus 130 gi~~lvi~G~~T~~---CV~~Ta~~a~~~G~~v~v 161 (201)
|++..++.|+..|- .|..-+..+.+.+.+++|
T Consensus 56 ~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 90 (387)
T PRK15138 56 GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLL 90 (387)
T ss_pred CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44444444553332 233333333444555554
No 378
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.02 E-value=4.5e+02 Score=20.80 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=13.3
Q ss_pred CCCCCCCCchHHHHHhCCCcEEEEe
Q 028963 113 TYSAFGNTRLQERLVGMGVEEVIVC 137 (201)
Q Consensus 113 ~~saf~~t~L~~~L~~~gi~~lvi~ 137 (201)
+-+.+-+..+...|.++|. +|++.
T Consensus 17 Ga~g~iG~~la~~L~~~G~-~V~~~ 40 (274)
T PRK07775 17 GASSGIGAATAIELAAAGF-PVALG 40 (274)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEE
Confidence 3344555666666666665 34433
Done!