Your job contains 1 sequence.
>028964
MMKLSRSLLSSRSQLSEKLLAGEANYVRDGLKSHVLISQAGMSTTGHDVSAKGSLGGRIF
APYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFAL
SPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADGFFISLNVANNILKTN
ERFVVPVSTAEFAVMKTACSV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028964
(201 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|D9J034 - symbol:WHY2 "Single-stranded DNA-bindi... 575 8.6e-56 1
TAIR|locus:2032293 - symbol:ATWHY2 "WHIRLY 2" species:370... 556 8.9e-54 1
UNIPROTKB|B2LXS7 - symbol:WHY1 "Single-stranded DNA-bindi... 369 5.8e-34 1
UNIPROTKB|Q9LL85 - symbol:WHY1 "Single-stranded DNA-bindi... 361 4.1e-33 1
TAIR|locus:2012542 - symbol:WHY1 "WHIRLY 1" species:3702 ... 359 6.7e-33 1
TAIR|locus:2058822 - symbol:WHY3 "AT2G02740" species:3702... 341 5.4e-31 1
>UNIPROTKB|D9J034 [details] [associations]
symbol:WHY2 "Single-stranded DNA-bindig protein WHY2,
mitochondrial" species:4113 "Solanum tuberosum" [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR009044 GO:GO:0005739
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 Gene3D:2.30.31.10
SUPFAM:SSF54447 InterPro:IPR013742 Pfam:PF08536 EMBL:HM234504
PDB:3N1H PDB:3N1I PDB:3N1J PDB:3N1K PDB:3N1L PDB:3R9Y PDB:3R9Z
PDB:3RA0 PDBsum:3N1H PDBsum:3N1I PDBsum:3N1J PDBsum:3N1K
PDBsum:3N1L PDBsum:3R9Y PDBsum:3R9Z PDBsum:3RA0 Uniprot:D9J034
Length = 238
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 116/177 (65%), Positives = 141/177 (79%)
Query: 27 VRDGLKSHVLISQAGMSTTGHDVSAK-GSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLD 85
V+ + H + + AG ST +V A G GR+FAPY V+KGKAA S +P LPTF +LD
Sbjct: 24 VKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLD 83
Query: 86 SGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAM 145
SG +K+ R+GVI+LTF P++GERKYDW K+Q FALS TEVGSL++MG RDSSEFFHDP+M
Sbjct: 84 SGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSM 143
Query: 146 LSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACS 200
LSSNAGQ+RKSLSIK NADG +FISL+V NN LKTN+RF VPV+TAEFAVM+TA S
Sbjct: 144 LSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 200
>TAIR|locus:2032293 [details] [associations]
symbol:ATWHY2 "WHIRLY 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0006952 "defense
response" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] InterPro:IPR009044
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0006952
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 EMBL:AC016162
UniGene:At.28009 UniGene:At.35209 Gene3D:2.30.31.10 SUPFAM:SSF54447
HSSP:Q9LL85 HOGENOM:HOG000006196 InterPro:IPR013742 Pfam:PF08536
EMBL:AB493532 EMBL:AY072110 EMBL:AY122961 IPI:IPI00517288
PIR:C96737 RefSeq:NP_177282.2 ProteinModelPortal:Q8VYF7 SMR:Q8VYF7
STRING:Q8VYF7 PRIDE:Q8VYF7 EnsemblPlants:AT1G71260.1 GeneID:843467
KEGG:ath:AT1G71260 TAIR:At1g71260 InParanoid:Q8VYF7 OMA:KAEFAVM
PhylomeDB:Q8VYF7 ProtClustDB:CLSN2690488 Genevestigator:Q8VYF7
Uniprot:Q8VYF7
Length = 238
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 115/180 (63%), Positives = 144/180 (80%)
Query: 23 EANYVRDGLKSHVLISQAGMSTTGHDVSAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFM 82
EA+ +R G S S G G D +AK S GR+FAPY ++KGKAA SV+PVLP+F
Sbjct: 22 EASTLR-GFASWSNSSTPGRGFPGKD-AAKPS--GRLFAPYSIFKGKAALSVEPVLPSFT 77
Query: 83 KLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHD 142
++DSG+L++ R+G +++TF PAIGERKYDW KKQ FALSPTEVGSL++MG +DSSEFFHD
Sbjct: 78 EIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHD 137
Query: 143 PAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACS 200
P+M SSNAGQ+RKSLS+K +ADG +FISL+V N+ILKTN+ FVVPV+ AEFAVMKTA S
Sbjct: 138 PSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFS 197
>UNIPROTKB|B2LXS7 [details] [associations]
symbol:WHY1 "Single-stranded DNA-bindig protein WHY1,
chloroplastic" species:4577 "Zea mays" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] InterPro:IPR009044
GO:GO:0005634 GO:GO:0009570 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0003723 GO:GO:0032211 GO:GO:0042162
GO:GO:0045910 Gene3D:2.30.31.10 SUPFAM:SSF54447 GO:GO:0009508
HOGENOM:HOG000006196 OMA:VDESIYI InterPro:IPR013742 Pfam:PF08536
EMBL:EU595664 EMBL:EU955861 EMBL:BT043360 RefSeq:NP_001123589.1
UniGene:Zm.88681 PRIDE:B2LXS7 GeneID:100170235
KEGG:dosa:Os06t0145800-00 KEGG:zma:100170235 Gramene:B2LXS7
MaizeGDB:1233241 Uniprot:B2LXS7
Length = 266
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 72/152 (47%), Positives = 99/152 (65%)
Query: 46 GHDVSAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAI 105
G+ G+ GR+F Y +YKGKAA S DP P F+ LDSG KV ++G +LL FAPA+
Sbjct: 73 GYGRPPNGAQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAV 132
Query: 106 GERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG 165
R+YDW +KQ F+LS E+G+LLT+GP DS EFFHDP S G++RK L I+ DG
Sbjct: 133 ATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDG 192
Query: 166 F--FISLNVANNILKTNERFVVPVSTAEFAVM 195
F +L+V N ++ +E +P++ EFAV+
Sbjct: 193 NGRFFNLSVQNRLINVDESIYIPITKGEFAVI 224
>UNIPROTKB|Q9LL85 [details] [associations]
symbol:WHY1 "Single-stranded DNA-bindig protein WHY1,
chloroplastic" species:4113 "Solanum tuberosum" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0050832 "defense response to
fungus" evidence=TAS] InterPro:IPR009044 GO:GO:0005634
GO:GO:0009507 GO:GO:0045893 GO:GO:0050832 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:2.30.31.10 SUPFAM:SSF54447
InterPro:IPR013742 Pfam:PF08536 EMBL:AF233342 PDB:1L3A PDBsum:1L3A
ProteinModelPortal:Q9LL85 SMR:Q9LL85 EvolutionaryTrace:Q9LL85
Uniprot:Q9LL85
Length = 274
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 68/149 (45%), Positives = 104/149 (69%)
Query: 52 KGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYD 111
+G+ ++F Y +YKGKAA +V+P P F LDSG K+ R+G+++L FAPA G R+YD
Sbjct: 85 QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYD 144
Query: 112 WAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFIS 169
W++KQ F+LS TE+GS++++G +DS EFFHDP S+ G++RK L ++ DG F +
Sbjct: 145 WSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFN 204
Query: 170 LNVANNILKTNERFVVPVSTAEFAVMKTA 198
L+V N ++ +E +PV+ AEFAV+ +A
Sbjct: 205 LSVQNKLINLDENIYIPVTKAEFAVLVSA 233
>TAIR|locus:2012542 [details] [associations]
symbol:WHY1 "WHIRLY 1" species:3702 "Arabidopsis
thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006952
"defense response" evidence=TAS] [GO:0003677 "DNA binding"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] [GO:0032211 "negative regulation of telomere
maintenance via telomerase" evidence=IMP] [GO:0042162 "telomeric
DNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP]
InterPro:IPR009044 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009507 GO:GO:0006952 GO:GO:0006355 GO:GO:0006281
GO:GO:0006351 GO:GO:0032211 EMBL:AC012188 GO:GO:0042162
Gene3D:2.30.31.10 SUPFAM:SSF54447 GO:GO:0009508 EMBL:AF332452
EMBL:AF370156 EMBL:AY059097 IPI:IPI00543013 PIR:F86278
RefSeq:NP_172893.1 UniGene:At.12043 HSSP:Q9LL85
ProteinModelPortal:Q9M9S3 SMR:Q9M9S3 STRING:Q9M9S3 PaxDb:Q9M9S3
PRIDE:Q9M9S3 EnsemblPlants:AT1G14410.1 GeneID:838003
KEGG:ath:AT1G14410 TAIR:At1g14410 eggNOG:NOG243049
HOGENOM:HOG000006196 InParanoid:Q9M9S3 OMA:VDESIYI PhylomeDB:Q9M9S3
ProtClustDB:CLSN2682942 Genevestigator:Q9M9S3 InterPro:IPR013742
Pfam:PF08536 Uniprot:Q9M9S3
Length = 263
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 70/150 (46%), Positives = 104/150 (69%)
Query: 51 AKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKY 110
A+G L R + + +YKGKAA +VDP P F+ LDSG K+ + G +LL FAP+ G R+Y
Sbjct: 74 AEG-LPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQY 132
Query: 111 DWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFI 168
DW+KKQ F+LS TE+G+L+++GPR+S EFFHDP S+ G++RK L ++ DG F
Sbjct: 133 DWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFF 192
Query: 169 SLNVANNILKTNERFVVPVSTAEFAVMKTA 198
+L+V N ++ +E +P++ AEFAV+ +A
Sbjct: 193 NLSVQNKLVNVDESIYIPITRAEFAVLISA 222
>TAIR|locus:2058822 [details] [associations]
symbol:WHY3 "AT2G02740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0006952 "defense response"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IMP] InterPro:IPR009044
GO:GO:0009570 EMBL:CP002685 GO:GO:0006952 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 EMBL:AC002521
Gene3D:2.30.31.10 SUPFAM:SSF54447 GO:GO:0009508 UniGene:At.41460
UniGene:At.66386 ProtClustDB:CLSN2682942 InterPro:IPR013742
Pfam:PF08536 EMBL:BT015336 EMBL:BT015641 EMBL:AK230205
IPI:IPI00545671 PIR:T00854 RefSeq:NP_001077872.1 RefSeq:NP_178377.2
ProteinModelPortal:Q66GR6 SMR:Q66GR6 STRING:Q66GR6 PRIDE:Q66GR6
EnsemblPlants:AT2G02740.1 GeneID:814803 KEGG:ath:AT2G02740
TAIR:At2g02740 InParanoid:Q66GR6 OMA:GDYEWSR PhylomeDB:Q66GR6
Genevestigator:Q66GR6 Uniprot:Q66GR6
Length = 268
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 65/144 (45%), Positives = 101/144 (70%)
Query: 58 RIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQH 117
R + + +YKGKAA +++P P F+ L+SG K+ ++G +LL FAPA G R+YDW++KQ
Sbjct: 84 RFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQV 143
Query: 118 FALSPTEVGSLLTMGPRDSSEFFHDPAM-LSSNAGQMRKSLSIKANADGF--FISLNVAN 174
F+LS TE+G+L+++GPR+S EFFHDP S+ G++RK L ++ DG F +L+V N
Sbjct: 144 FSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQN 203
Query: 175 NILKTNERFVVPVSTAEFAVMKTA 198
+L +E +P++ AEFAV+ +A
Sbjct: 204 KLLNVDESVYIPITKAEFAVLISA 227
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 201 183 0.00076 110 3 11 22 0.42 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 584 (62 KB)
Total size of DFA: 140 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.03u 0.13s 15.16t Elapsed: 00:00:00
Total cpu time: 15.03u 0.13s 15.16t Elapsed: 00:00:00
Start: Fri May 10 00:22:43 2013 End: Fri May 10 00:22:43 2013