BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028966
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
Query: 26 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAW 85
+V K A V++LHGLGD G W++ + +IK+ICP AP RP+T+ +W
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSW 74
Query: 86 FDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATC 140
FD+ LS D +D G+ AA ++ L+ E P++ ++ +GGFS G A +LY+A
Sbjct: 75 FDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALT 133
Query: 141 FAHGKYGNGNPYPAKLSAVVGLSGWLP 167
KL+ V LS WLP
Sbjct: 134 TQQ-----------KLAGVTALSCWLP 149
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 16/143 (11%)
Query: 5 GPSMSSGGNTVRRAIEFGRTYVVRPKGKHQATVVWLHGLGDNGSS---W-SQLL-ETLPL 59
GP ++ G+ ++R I V P G+H A++++LHG GD+G W Q+L + L
Sbjct: 1 GPMAAASGSVLQRCI-------VSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTF 53
Query: 60 PNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-PT 118
+IK I PTAP R T G S WFD ++ D P+ LE +D + +L+ E +
Sbjct: 54 QHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKS 113
Query: 119 DIK---LGVGGFSMGAATALYSA 138
IK + +GGFSMG A++ A
Sbjct: 114 GIKKNRILIGGFSMGGCMAMHLA 136
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 26 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPST 83
+++P A V+WLHGLG + + + E L L +++ P APTRP+TI GG+
Sbjct: 6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMP 65
Query: 84 AWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEP-TDI---KLGVGGFSMGAATALYSAT 139
+W+D+ +S LE L+ +A V +L+ + T I ++ + GFS G A ++A
Sbjct: 66 SWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAF 125
Query: 140 CFAHGKYG 147
G G
Sbjct: 126 INWQGPLG 133
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 26 VVRPKGKHQATVVWLHGLGDNGSSWSQLLE--TLPLPNIKWICPTAPTRPMTIFGGFPST 83
++ P + + V+WLHGLG +G + ++ + L I++I P A P+TI G
Sbjct: 29 LMEPAKQARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMR 88
Query: 84 AWFDVGDLSEDVPD---DLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALY 136
AW+D+ L + + D+EG++++ A V L+ ++ + + GFS G A Y
Sbjct: 89 AWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATY 148
Query: 137 SATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 167
+A KL ++ LS +LP
Sbjct: 149 TAI-----------TSQRKLGGIMALSTYLP 168
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 35 ATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLS 92
A ++WLHGLG + + + + E L LP+ ++I P AP++ +T+ GG+ +W+D+ S
Sbjct: 25 ACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFS 84
Query: 93 EDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSATCFAHGKYGN 148
D + L+A+A V+ L+ + ++ + GFS G A L++A
Sbjct: 85 PARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAF--------- 135
Query: 149 GNPYPAKLSAVVGLSGWLPCSKFDFIYLLQ-FERLSIIAFFNST 191
Y L V+ LS + P FD + L + +R+ ++ S
Sbjct: 136 -RRYAQPLGGVLALSTYAPT--FDDLALDERHKRIPVLHLHGSQ 176
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 13 NTVRRAIEFGRTYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAP 70
+ + R + FGR G+ + VV+LHG G +G+ L E L LP ++ P AP
Sbjct: 47 DIMTRKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAP 104
Query: 71 TRPMTIFGGFPSTAWFDV------GDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGV 124
GF WF + + + D A H L L +
Sbjct: 105 EPCRACGFGF---QWFPIPWLDGSSETAAAEGMAAAARDLDAFHDERLAEEGLPPEALAL 161
Query: 125 GGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWL 166
GFS G AL+ A A +++ +VG SG L
Sbjct: 162 VGFSQGTMMALHVAPRRAE-----------EIAGIVGFSGRL 192
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 13 NTVRRAIEFGRTYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAP 70
+ + R + FGR G+ + VV+LHG G +G+ L E L LP ++ P AP
Sbjct: 47 DIMTRKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAP 104
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 74 MTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE 116
MTIF + WF +G P+ L + A HVVN L+TE
Sbjct: 1 MTIFDNYE--VWFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 90 DLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGVGGF 127
DLS + DDLE + + ++N + +D ++G G F
Sbjct: 130 DLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSF 167
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 77 FGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGVGGFSMGAATALY 136
FGGF WFD + + V +D AAA VNLL +PT I+L + T Y
Sbjct: 322 FGGFGGYVWFDKNN--DGVQNDSNA--AAAGITVNLL--DPTGIRLAT---TTTDITGHY 372
Query: 137 SATCFAHGKY 146
+ +G Y
Sbjct: 373 NFDNLTNGNY 382
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 77 FGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGVGGFSMGAATALY 136
FGGF WFD ++ V +D AAA VNLL +PT I+L + T Y
Sbjct: 305 FGGFGGYVWFDKN--NDGVQNDSNA--AAAGITVNLL--DPTGIRLAT---TTTDITGHY 355
Query: 137 SATCFAHGKY 146
+ +G Y
Sbjct: 356 NFDNLTNGNY 365
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
Exoribonuclease Involved In Structured Rna Processing
Length = 375
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 151 PYPAKLSAVVGLSGWLPCSKFDFIYLLQFERLSIIA 186
P AKL SGWLP + D L+Q R ++A
Sbjct: 161 PITAKLMVETEASGWLPAA-LDECRLMQMRRQEVVA 195
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In
Complex With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In
Complex With Pmsf
Length = 266
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 27 VRPKGKHQATVVWLHGLGDNGSSWSQLLETL 57
VR G + VV HG G + S+WS++L L
Sbjct: 10 VRVVGSGERVVVLSHGFGTDQSAWSRVLPYL 40
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 75 TIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE 116
TIF + WF +G P+ L + A HVVN L+TE
Sbjct: 2 TIFDNYE--VWFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With
A Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With
A Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 27 VRPKGKHQATVVWLHGLGDNGSSWSQLLETL 57
VR G + VV HG G + S+WS++L L
Sbjct: 12 VRVVGSGERVVVLSHGFGTDQSAWSRVLPYL 42
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 78 GGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLS 114
GGFP G L D PD L D AH+ ++++
Sbjct: 126 GGFPGWLQRVKGKLRTDAPDYLHATDNYVAHIASIIA 162
>pdb|1GU3|A Chain A, Cbm4 Structure And Function
Length = 149
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 18 AIEFGRTYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIF 77
AIE G TY +R V +G NG+ + +L+T P + P T T
Sbjct: 53 AIEEGTTYTLRYTATASTDVTVRALVGQNGAPYGTVLDTSPALTSE---PRQVTETFTAS 109
Query: 78 GGFPSTAWFD 87
+P+T D
Sbjct: 110 ATYPATPAAD 119
>pdb|1ULO|A Chain A, N-Terminal Cellulose-Binding Domain From Cellulomonas Fimi
Beta-1,4-Glucanase C, Nmr, Minimized Average Structure
pdb|1ULP|A Chain A, N-Terminal Cellulose-Binding Domain From Cellulomonas Fimi
Beta-1,4-Glucanase C, Nmr, 25 Structures
Length = 152
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 18 AIEFGRTYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIF 77
AIE G TY +R V +G NG+ + +L+T P + P T T
Sbjct: 53 AIEEGTTYTLRYTATASTDVTVRALVGQNGAPYGTVLDTSPALTSE---PRQVTETFTAS 109
Query: 78 GGFPSTAWFD 87
+P+T D
Sbjct: 110 ATYPATPAAD 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,848,306
Number of Sequences: 62578
Number of extensions: 294203
Number of successful extensions: 812
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 27
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)