Your job contains 1 sequence.
>028968
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ
VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV
KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGI
HTTIRIRRIIAGIGVEIVFPL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028968
(201 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2129186 - symbol:AT4G17560 species:3702 "Arabi... 289 8.2e-37 2
TAIR|locus:2171609 - symbol:AT5G47190 species:3702 "Arabi... 280 1.5e-33 2
TAIR|locus:2139757 - symbol:AT4G11630 species:3702 "Arabi... 162 5.0e-12 1
TAIR|locus:2032457 - symbol:AT1G24240 species:3702 "Arabi... 159 1.0e-11 1
TAIR|locus:2181975 - symbol:AT5G11750 species:3702 "Arabi... 159 1.0e-11 1
TIGR_CMR|CBU_0442 - symbol:CBU_0442 "ribosomal protein L1... 96 5.0e-05 1
TIGR_CMR|GSU_0648 - symbol:GSU_0648 "ribosomal protein L1... 95 6.3e-05 1
TIGR_CMR|CHY_1428 - symbol:CHY_1428 "ribosomal protein L1... 91 0.00017 1
UNIPROTKB|P0A7K6 - symbol:rplS "50S ribosomal subunit pro... 86 0.00057 1
>TAIR|locus:2129186 [details] [associations]
symbol:AT4G17560 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR001857 Pfam:PF01245 PRINTS:PR00061 PROSITE:PS01015
GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 EMBL:Z97343
GO:GO:0019843 EMBL:AL161546 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 EMBL:AY062821 EMBL:AY081625
EMBL:AY086121 IPI:IPI00545108 PIR:C71445 RefSeq:NP_567531.1
UniGene:At.27419 ProteinModelPortal:Q8W463 SMR:Q8W463 STRING:Q8W463
PaxDb:Q8W463 PRIDE:Q8W463 EnsemblPlants:AT4G17560.1 GeneID:827471
KEGG:ath:AT4G17560 TAIR:At4g17560 HOGENOM:HOG000016266
InParanoid:Q8W463 OMA:VHTTIRV PhylomeDB:Q8W463
ProtClustDB:CLSN2689487 Genevestigator:Q8W463 GermOnline:AT4G17560
TIGRFAMs:TIGR01024 Uniprot:Q8W463
Length = 225
Score = 289 (106.8 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 55/86 (63%), Positives = 66/86 (76%)
Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
RKPR+KLGD+MGILN++A+E +E RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164
Query: 176 QNXXXXXXXXXXXXXXXXXVEIVFPL 201
QN VEIVFP+
Sbjct: 165 QNAGIHTTIRIRRIIAGIGVEIVFPI 190
Score = 123 (48.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 6 LPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFVNAQVK 62
LPQALH IPR+ TQ SK LGFS+ LS P + +SVS + G GF ++ +V+
Sbjct: 8 LPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVR 65
Query: 63 DSFVVR 68
+ F+VR
Sbjct: 66 NEFIVR 71
>TAIR|locus:2171609 [details] [associations]
symbol:AT5G47190 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0010103 "stomatal complex
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR001857 Pfam:PF01245 PRINTS:PR00061 PROSITE:PS01015
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AB018117 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 HOGENOM:HOG000016266
ProtClustDB:CLSN2689487 TIGRFAMs:TIGR01024 EMBL:AY080626
EMBL:AY117181 EMBL:AY086970 IPI:IPI00525994 RefSeq:NP_568677.1
UniGene:At.29908 ProteinModelPortal:Q8RXX5 SMR:Q8RXX5 STRING:Q8RXX5
PaxDb:Q8RXX5 PRIDE:Q8RXX5 EnsemblPlants:AT5G47190.1 GeneID:834765
KEGG:ath:AT5G47190 GeneFarm:194 TAIR:At5g47190 InParanoid:Q8RXX5
OMA:DIMGLLN PhylomeDB:Q8RXX5 Genevestigator:Q8RXX5
GermOnline:AT5G47190 Uniprot:Q8RXX5
Length = 229
Score = 280 (103.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 55/87 (63%), Positives = 65/87 (74%)
Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174
P K RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMS
Sbjct: 108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMS 167
Query: 175 RQNXXXXXXXXXXXXXXXXXVEIVFPL 201
RQN VEIVFP+
Sbjct: 168 RQNAGIHTTIRIRRIIAGIGVEIVFPI 194
Score = 101 (40.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 3 SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
S +LPQALH IPR T SK LG S++L R V+ +SVS + N GF +++
Sbjct: 5 SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62
Query: 60 QVKDSFVVR 68
+ + F+ +
Sbjct: 63 KKRKEFIAK 71
>TAIR|locus:2139757 [details] [associations]
symbol:AT4G11630 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001857
Pfam:PF01245 PRINTS:PR00061 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL161532
EMBL:AL049500 InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335
PANTHER:PTHR15680 HOGENOM:HOG000016266 TIGRFAMs:TIGR01024
UniGene:At.33552 ProtClustDB:CLSN2685510 EMBL:BT012188
EMBL:AK221452 IPI:IPI00535492 PIR:T04210 RefSeq:NP_192900.1
ProteinModelPortal:Q9T0D0 SMR:Q9T0D0 STRING:Q9T0D0
EnsemblPlants:AT4G11630.1 GeneID:826768 KEGG:ath:AT4G11630
TAIR:At4g11630 InParanoid:Q9T0D0 OMA:CGSWSEN PhylomeDB:Q9T0D0
Genevestigator:Q9T0D0 Uniprot:Q9T0D0
Length = 225
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
IM I++K AVE S R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N
Sbjct: 115 IMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 174
Query: 185 XXXXXXXXXXVEIVFPL 201
VE +FPL
Sbjct: 175 RIRRLVAGVGVESMFPL 191
>TAIR|locus:2032457 [details] [associations]
symbol:AT1G24240 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR001857 Pfam:PF01245 PRINTS:PR00061
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC002396 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 HOGENOM:HOG000016266
TIGRFAMs:TIGR01024 EMBL:AY044318 EMBL:AY049255 EMBL:AY090278
IPI:IPI00541442 PIR:T00654 RefSeq:NP_564213.1 UniGene:At.33552
UniGene:At.62626 ProteinModelPortal:O48691 SMR:O48691 STRING:O48691
EnsemblPlants:AT1G24240.1 GeneID:839038 KEGG:ath:AT1G24240
TAIR:At1g24240 InParanoid:O48691 PhylomeDB:O48691
ProtClustDB:CLSN2685510 Genevestigator:O48691 Uniprot:O48691
Length = 222
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
IM I++K AVE + R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N
Sbjct: 112 IMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 171
Query: 185 XXXXXXXXXXVEIVFPL 201
VE +FPL
Sbjct: 172 RIRRLVAGVGVESMFPL 188
>TAIR|locus:2181975 [details] [associations]
symbol:AT5G11750 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR001857 Pfam:PF01245
PRINTS:PR00061 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL163814
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
HOGENOM:HOG000016266 TIGRFAMs:TIGR01024 ProtClustDB:CLSN2685510
EMBL:AF375449 EMBL:AY060543 IPI:IPI00521915 PIR:T48534
RefSeq:NP_196736.1 UniGene:At.27374 ProteinModelPortal:Q9LYF5
SMR:Q9LYF5 STRING:Q9LYF5 EnsemblPlants:AT5G11750.1 GeneID:831047
KEGG:ath:AT5G11750 TAIR:At5g11750 InParanoid:Q9LYF5
PhylomeDB:Q9LYF5 Genevestigator:Q9LYF5 Uniprot:Q9LYF5
Length = 229
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
IM I++K AVE + R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N
Sbjct: 119 IMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 178
Query: 185 XXXXXXXXXXVEIVFPL 201
VE +FPL
Sbjct: 179 RIRRLVAGVGVESMFPL 195
>TIGR_CMR|CBU_0442 [details] [associations]
symbol:CBU_0442 "ribosomal protein L19" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00402 InterPro:IPR001857
InterPro:IPR018257 Pfam:PF01245 PIRSF:PIRSF002191 PRINTS:PR00061
PROSITE:PS01015 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 InterPro:IPR008991
SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680 TIGRFAMs:TIGR01024
KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338 HOGENOM:HOG000016264
RefSeq:NP_819479.1 ProteinModelPortal:Q83E85 SMR:Q83E85
GeneID:1208326 KEGG:cbu:CBU_0442 PATRIC:17929575
BioCyc:CBUR227377:GJ7S-440-MONOMER Uniprot:Q83E85
Length = 115
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 134 VEASESE-RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXX 191
+E +++ + IPD R GD V ++++V E NR RL ++G+V++R++
Sbjct: 8 LETEQTQGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSH 67
Query: 192 XXXVEIVFPL 201
VE VF L
Sbjct: 68 GEGVERVFQL 77
>TIGR_CMR|GSU_0648 [details] [associations]
symbol:GSU_0648 "ribosomal protein L19" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00402
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
HOGENOM:HOG000016264 RefSeq:NP_951705.1 ProteinModelPortal:Q74FG1
SMR:Q74FG1 GeneID:2687158 KEGG:gsu:GSU0648 PATRIC:22024043
BioCyc:GSUL243231:GH27-658-MONOMER Uniprot:Q74FG1
Length = 118
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 129 LNK-RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXX 186
+NK A+E + ++ IP + GD +++ +++ E ++ R+ ++G+ +SRQN
Sbjct: 1 MNKIDAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTV 60
Query: 187 XXXXXXXXVEIVFPL 201
VE VFPL
Sbjct: 61 RKISNNIGVERVFPL 75
>TIGR_CMR|CHY_1428 [details] [associations]
symbol:CHY_1428 "ribosomal protein L19" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257
Pfam:PF01245 PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335
PANTHER:PTHR15680 TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR
ProtClustDB:PRK05338 HOGENOM:HOG000016264 RefSeq:YP_360260.1
ProteinModelPortal:Q3AC74 SMR:Q3AC74 STRING:Q3AC74 GeneID:3728543
KEGG:chy:CHY_1428 PATRIC:21275987
BioCyc:CHYD246194:GJCN-1427-MONOMER Uniprot:Q3AC74
Length = 113
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
+++E + + +P+ R GD V++ +V E NR R+ Y+G+V+ ++
Sbjct: 5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVS 64
Query: 191 XXXXVEIVFPL 201
VE FPL
Sbjct: 65 YGIGVERTFPL 75
>UNIPROTKB|P0A7K6 [details] [associations]
symbol:rplS "50S ribosomal subunit protein L19"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 PDB:2VHM
PDBsum:2VHM PDB:2RDO PDBsum:2RDO InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 EMBL:X01818 TIGRFAMs:TIGR01024
PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF
PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86
PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC
PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC
PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ
PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T
PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR
PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ
PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR
PDBsum:4GAU PDB:3BBX PDBsum:3BBX KO:K02884 OMA:TLKVHVR
ProtClustDB:PRK05338 HOGENOM:HOG000016264 PIR:S07951
RefSeq:NP_417097.1 RefSeq:YP_490829.1 ProteinModelPortal:P0A7K6
SMR:P0A7K6 DIP:DIP-35793N IntAct:P0A7K6 MINT:MINT-1245288
PhosSite:P0810432 PaxDb:P0A7K6 PRIDE:P0A7K6
EnsemblBacteria:EBESCT00000002329 EnsemblBacteria:EBESCT00000018082
GeneID:12931612 GeneID:947096 KEGG:ecj:Y75_p2554 KEGG:eco:b2606
PATRIC:32120611 EchoBASE:EB0873 EcoGene:EG10880
BioCyc:EcoCyc:EG10880-MONOMER BioCyc:ECOL316407:JW2587-MONOMER
EvolutionaryTrace:P0A7K6 Genevestigator:P0A7K6 Uniprot:P0A7K6
Length = 115
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
+ +E + ++ +P R GD VE+K+ V E +++RL ++G+V++ +N
Sbjct: 6 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 65
Query: 191 XXXXVEIVF 199
VE VF
Sbjct: 66 NGEGVERVF 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 201 139 0.00091 102 3 11 22 0.41 31
30 0.46 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 569 (61 KB)
Total size of DFA: 120 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.08u 0.21s 11.29t Elapsed: 00:00:01
Total cpu time: 11.08u 0.21s 11.29t Elapsed: 00:00:01
Start: Fri May 10 00:30:29 2013 End: Fri May 10 00:30:30 2013