Query 028968
Match_columns 201
No_of_seqs 139 out of 900
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_R Ribosomal protein L19; 100.0 3.2E-56 1.1E-60 384.0 -7.3 188 1-201 1-198 (233)
2 3r8s_P 50S ribosomal protein L 100.0 2.1E-29 7.1E-34 198.2 10.4 70 132-201 5-75 (114)
3 3v2d_T 50S ribosomal protein L 100.0 4.9E-29 1.7E-33 203.1 11.0 70 132-201 8-78 (146)
4 2zjr_M 50S ribosomal protein L 100.0 1.8E-29 6.1E-34 209.2 5.2 78 123-201 5-83 (166)
5 2ftc_K 39S ribosomal protein L 99.9 1.3E-26 4.4E-31 178.2 8.5 59 143-201 1-59 (98)
6 4fm4_B NitrIle hydratase beta 70.8 2.2 7.4E-05 35.9 2.5 34 144-177 117-154 (206)
7 2eif_A IF-5A, protein (eukaryo 67.3 7.9 0.00027 30.1 4.9 48 142-200 12-65 (136)
8 2kbn_A Conserved protein; nucl 65.4 5 0.00017 29.6 3.2 29 142-170 57-86 (109)
9 3d6x_A (3R)-hydroxymyristoyl-[ 65.0 6.6 0.00022 29.1 3.8 28 146-173 101-128 (146)
10 4h4g_A (3R)-hydroxymyristoyl-[ 61.0 7.3 0.00025 30.5 3.6 27 146-172 111-137 (160)
11 2zzd_A Thiocyanate hydrolase s 60.6 4.8 0.00016 31.9 2.5 36 142-177 33-72 (126)
12 2gll_A FABZ, (3R)-hydroxymyris 60.2 9.3 0.00032 29.9 4.1 29 145-173 124-152 (171)
13 2e6z_A Transcription elongatio 60.0 8.2 0.00028 26.0 3.3 28 144-177 6-33 (59)
14 3cnr_A Type IV fimbriae assemb 56.2 21 0.00072 27.1 5.4 46 145-196 41-86 (117)
15 3qyh_B CO-type nitrIle hydrata 54.4 6.7 0.00023 33.3 2.5 36 142-177 127-166 (219)
16 1jb7_A Telomere-binding protei 54.0 6.6 0.00023 36.6 2.6 42 141-188 108-150 (495)
17 1ugp_B NitrIle hydratase beta 53.9 6.7 0.00023 33.4 2.5 35 143-177 136-174 (226)
18 1nz9_A Transcription antitermi 53.0 36 0.0012 22.2 5.5 27 145-177 4-30 (58)
19 3hht_B NitrIle hydratase beta 52.9 7.1 0.00024 33.4 2.4 35 143-177 139-177 (229)
20 1u1z_A (3R)-hydroxymyristoyl-[ 52.4 12 0.00042 28.9 3.6 28 146-173 121-148 (168)
21 3bbo_R Ribosomal protein L19; 51.5 3.1 0.00011 36.1 0.0 6 109-114 110-115 (233)
22 4b3f_X DNA-binding protein smu 50.4 30 0.001 31.9 6.4 35 141-178 74-110 (646)
23 4i83_A 3-hydroxyacyl-[acyl-car 49.7 15 0.00051 28.0 3.6 28 146-173 107-134 (152)
24 3e0e_A Replication protein A; 49.4 17 0.0006 26.0 3.8 26 145-170 63-88 (97)
25 2vc8_A Enhancer of mRNA-decapp 49.0 45 0.0016 24.8 6.0 38 147-191 7-44 (84)
26 2f41_A Transcription factor FA 48.0 25 0.00084 25.3 4.4 28 145-172 72-101 (121)
27 1z6b_A Pffabz, fatty acid synt 47.5 17 0.00059 27.2 3.6 28 145-172 106-135 (154)
28 3p8d_A Medulloblastoma antigen 46.5 42 0.0014 23.6 5.2 44 143-198 4-47 (67)
29 3a8g_B NitrIle hydratase subun 46.3 16 0.00055 30.8 3.6 36 143-178 120-160 (212)
30 2d6f_A Glutamyl-tRNA(Gln) amid 45.9 23 0.00079 32.6 4.9 45 145-197 15-61 (435)
31 2rm4_A CG6311-PB, DM EDC3; enh 43.3 42 0.0014 25.8 5.2 38 147-193 10-48 (103)
32 2k52_A Uncharacterized protein 43.1 19 0.00065 24.6 3.0 22 145-166 45-67 (80)
33 1iq6_A (R)-hydratase, (R)-spec 41.5 28 0.00096 24.5 3.8 16 145-160 87-102 (134)
34 1qzg_A Protection of telomeres 41.2 16 0.00056 30.3 2.8 34 140-179 94-128 (187)
35 1wi5_A RRP5 protein homolog; S 38.4 23 0.00079 26.0 3.0 33 145-183 67-100 (119)
36 2f3x_A Transcription factor FA 37.5 40 0.0014 26.0 4.4 28 145-172 108-137 (157)
37 3bnv_A CJ0977; virulence facto 36.7 41 0.0014 25.6 4.3 29 145-173 99-128 (152)
38 3p8b_B Transcription antitermi 36.0 73 0.0025 24.3 5.6 43 143-193 89-131 (152)
39 1bkb_A Translation initiation 35.4 66 0.0022 24.7 5.3 51 143-200 11-63 (136)
40 1zq1_A Glutamyl-tRNA(Gln) amid 35.3 35 0.0012 31.4 4.3 49 145-197 11-61 (438)
41 3esi_A Uncharacterized protein 34.7 27 0.00093 27.0 3.0 20 144-163 76-95 (129)
42 4he6_A Peptidase family U32; u 33.9 30 0.001 24.3 2.9 36 163-199 3-40 (89)
43 3j21_J 50S ribosomal protein L 33.7 81 0.0028 25.2 5.7 37 141-177 51-87 (141)
44 3k67_A Putative dehydratase AF 33.7 25 0.00086 27.4 2.7 17 144-160 114-130 (159)
45 3r8s_K 50S ribosomal protein L 32.5 63 0.0022 25.2 4.8 33 145-177 32-67 (122)
46 1vq8_K 50S ribosomal protein L 31.8 70 0.0024 25.3 5.0 36 141-176 42-77 (132)
47 3kuv_A Fluoroacetyl coenzyme A 31.8 42 0.0014 26.0 3.6 31 144-174 78-108 (139)
48 3qoo_A Uncharacterized protein 31.6 48 0.0016 25.7 3.9 33 144-176 77-109 (138)
49 2khj_A 30S ribosomal protein S 31.4 36 0.0012 24.6 3.0 16 145-160 75-90 (109)
50 2khi_A 30S ribosomal protein S 30.9 36 0.0012 24.9 3.0 22 145-166 75-97 (115)
51 1ixl_A Hypothetical protein PH 30.7 52 0.0018 23.3 3.8 29 145-173 80-108 (131)
52 2k75_A Uncharacterized protein 30.6 27 0.00093 25.5 2.3 24 146-169 60-84 (106)
53 3ntk_A Maternal protein tudor; 30.5 1.7E+02 0.006 22.4 7.1 62 121-194 27-88 (169)
54 3cpf_A Eukaryotic translation 30.3 84 0.0029 24.3 5.1 49 145-200 11-61 (138)
55 1iz6_A Initiation factor 5A; S 29.3 82 0.0028 24.4 4.9 47 143-200 9-61 (138)
56 3hks_A EIF-5A-2, eukaryotic tr 28.9 98 0.0033 25.1 5.5 49 145-200 33-83 (167)
57 2b3n_A Hypothetical protein AF 27.0 63 0.0021 24.8 3.9 29 144-172 114-142 (159)
58 2cwz_A Thioesterase family pro 26.8 96 0.0033 23.2 4.8 31 145-175 73-103 (141)
59 3ir3_A HTD2, 3-hydroxyacyl-thi 26.3 73 0.0025 23.7 4.1 18 144-161 96-113 (148)
60 2do3_A Transcription elongatio 25.9 59 0.002 23.2 3.2 28 145-178 17-44 (69)
61 2h4u_A Thioesterase superfamil 25.5 74 0.0025 23.2 3.9 30 145-174 98-127 (145)
62 3cdd_A Prophage MUSO2, 43 kDa 25.5 99 0.0034 26.3 5.2 36 145-186 56-91 (361)
63 2c2i_A RV0130; hotdog, hydrata 25.0 91 0.0031 22.6 4.3 16 145-160 99-114 (151)
64 3dm3_A Replication factor A; p 24.8 77 0.0026 23.2 3.8 26 145-170 66-92 (105)
65 1q6w_A Monoamine oxidase regul 24.5 54 0.0019 24.3 3.0 16 145-160 106-121 (161)
66 3v2d_O 50S ribosomal protein L 24.5 1.1E+02 0.0037 23.8 4.8 33 145-177 32-67 (122)
67 2diq_A Tudor and KH domain-con 24.4 1.5E+02 0.005 21.3 5.3 63 121-194 11-73 (110)
68 3er0_A Eukaryotic translation 24.2 1.6E+02 0.0053 23.8 5.9 50 144-200 34-85 (167)
69 4fxt_A Uncharacterized protein 24.1 1.8E+02 0.006 24.3 6.3 49 148-200 76-132 (202)
70 3fdr_A Tudor and KH domain-con 24.1 1.8E+02 0.0062 20.1 7.3 64 120-194 5-68 (94)
71 1x6o_A Eukaryotic initiation f 23.6 96 0.0033 25.2 4.5 50 144-200 34-85 (174)
72 2egj_A Hypothetical protein AQ 23.6 1.1E+02 0.0039 20.5 4.4 24 144-167 65-89 (128)
73 3qii_A PHD finger protein 20; 23.5 1.5E+02 0.0051 21.8 5.2 45 142-198 18-62 (85)
74 3u5e_V L17A, YL32, 60S ribosom 22.8 51 0.0017 26.3 2.6 36 142-177 48-83 (137)
75 2k4k_A GSP13, general stress p 22.7 61 0.0021 24.3 3.0 21 145-165 51-72 (130)
76 2jvv_A Transcription antitermi 22.6 1.2E+02 0.004 23.6 4.8 28 145-178 127-154 (181)
77 1lo7_A 4-hydroxybenzoyl-COA th 22.6 1.2E+02 0.0041 21.0 4.4 24 145-168 71-95 (141)
78 2prx_A Thioesterase superfamil 22.4 98 0.0034 22.7 4.1 30 145-174 107-136 (160)
79 1xjv_A Protection of telomeres 22.3 43 0.0015 28.3 2.3 20 141-160 62-83 (294)
80 2bi0_A Hypothetical protein RV 22.3 56 0.0019 28.3 3.0 16 145-160 282-297 (337)
81 3r87_A Putative uncharacterize 21.9 1.2E+02 0.0041 21.2 4.3 24 144-167 68-92 (135)
82 2lkn_A AH receptor-interacting 21.8 47 0.0016 26.5 2.3 18 141-158 22-39 (165)
83 2z1c_A Hydrogenase expression/ 21.5 49 0.0017 23.6 2.1 14 143-156 33-46 (75)
84 1wlu_A PAAI protein, phenylace 21.4 1.2E+02 0.0042 21.3 4.3 30 145-174 73-102 (136)
85 3exz_A MAOC-like dehydratase; 21.4 70 0.0024 23.9 3.1 16 145-160 91-106 (154)
86 3tre_A EF-P, elongation factor 21.1 1.6E+02 0.0055 24.0 5.5 52 142-200 8-60 (191)
87 2eqk_A Tudor domain-containing 21.0 1.7E+02 0.0057 21.6 5.0 64 121-200 3-66 (85)
88 3d37_A Tail protein, 43 kDa; s 20.9 1.3E+02 0.0044 26.1 5.1 37 145-187 52-90 (381)
89 1o7i_A SSB, SSO2364, single st 20.8 62 0.0021 23.7 2.6 23 145-167 62-85 (119)
90 2qcp_X Cation efflux system pr 20.6 72 0.0025 22.5 2.9 19 142-160 50-68 (80)
91 3d6l_A Putative hydrolase; hot 20.2 1.4E+02 0.0047 20.9 4.3 30 145-174 62-91 (137)
92 1wru_A 43 kDa tail protein; ba 20.1 1.3E+02 0.0045 25.9 5.0 37 145-187 47-85 (379)
No 1
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.2e-56 Score=384.04 Aligned_cols=188 Identities=57% Similarity=0.847 Sum_probs=77.0
Q ss_pred CCccccccccccccCC-CCCCCC-CcceeeeecccCC----CCcccceeeeecCCCccccceeec----cccceeEEeec
Q 028968 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRG----PFVSHGVSVSAKPIGWNLGFFVNA----QVKDSFVVRAE 70 (201)
Q Consensus 1 m~~~~lpqal~~~~r~-p~~~~~-~~~l~~ss~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~a~ 70 (201)
|||++|||||+++||+ |.|||| ||+||||+.+.|. .+.++++++++. +|++|||+|++ .+|++||+|||
T Consensus 1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~ 79 (233)
T 3bbo_R 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE 79 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence 9999999999999997 558876 8999999765332 222334555443 57788888877 48999999999
Q ss_pred cchhhhcchhhHHHhHHHHhhccceeeeecccccccchhhhccCCCCCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 028968 71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD 150 (201)
Q Consensus 71 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~e~~~~~p~r~~~~klg~lM~iLnke~IE~~q~kkdiPeFr~GD 150 (201)
+++. ++++.+ +.+.++++|++....+|+++ ++|+++++||+++|++|++++|++.++++++|+|++||
T Consensus 80 ~~~~--~~~~~~---------~~~~~~e~~~~~~~~~~~~~-~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~GD 147 (233)
T 3bbo_R 80 AEDS--SDAPAE---------SVAVVAEEELPVESEAEAEE-RPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGD 147 (233)
T ss_dssp -----------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCCS
T ss_pred cccC--CCCccc---------chhhcccccchhhhhhcccc-CCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCCC
Confidence 9542 222211 12233334444333344444 99999999999999999999999999999999999999
Q ss_pred EEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 151 VVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 151 tVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
||+|+++|.|+|+|+|.|+|+||+++|+|+++|||||||++|+||||+|||
T Consensus 148 tV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpL 198 (233)
T 3bbo_R 148 IVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198 (233)
T ss_dssp CCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCC
T ss_pred EEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEec
Confidence 999999999999999999999999999999999999999999999999997
No 2
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=99.96 E-value=2.1e-29 Score=198.19 Aligned_cols=70 Identities=36% Similarity=0.709 Sum_probs=67.6
Q ss_pred HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
+++|+.|+++|+|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 5 ~~~e~~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl 75 (114)
T 3r8s_P 5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT 75 (114)
T ss_dssp HHHHGGGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence 46788889999999999999999999999 99999999999999999999999999999999999999997
No 3
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=99.96 E-value=4.9e-29 Score=203.07 Aligned_cols=70 Identities=37% Similarity=0.718 Sum_probs=67.9
Q ss_pred HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
+.+|+.++++|+|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 8 ~~ie~~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl 78 (146)
T 3v2d_T 8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 78 (146)
T ss_dssp HHHHHTTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence 57888899999999999999999999999 99999999999999999999999999999999999999997
No 4
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=99.95 E-value=1.8e-29 Score=209.18 Aligned_cols=78 Identities=35% Similarity=0.568 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 123 GDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 123 g~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
|+||+.|+++++.+. .++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++|||||||++|+||||+|||
T Consensus 5 M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fpl 83 (166)
T 2zjr_M 5 IKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 83 (166)
T ss_dssp CCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEec
Confidence 456666554444322 2389999999999999999999 99999999999999999999999999999999999999997
No 5
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.93 E-value=1.3e-26 Score=178.15 Aligned_cols=59 Identities=32% Similarity=0.636 Sum_probs=58.1
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
+|+|++||||+|+++|.++|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl 59 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEec
Confidence 69999999999999999999999999999999999999999999999999999999997
No 6
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=70.80 E-value=2.2 Score=35.92 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=28.1
Q ss_pred CCCCCCCEEEEEEEeecCCcccceE----EEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn 177 (201)
|.|++||.|+|.-..+..-+|+..| +|+|++.+|
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEec
Confidence 6799999999986555577888877 799998875
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=67.26 E-value=7.9 Score=30.11 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceEEEEEEEee----cC-C-ccceEEEEeeeCCeeeEEEee
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ----NA-G-IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarr----n~-G-i~sTFTVRKIs~GVGVER~FP 200 (201)
..++|+.|++|.+. + +.|+ |+... |+ | ---...+|++..|.-+|++|+
T Consensus 12 ~~~~lr~G~~I~~~-----g----~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~ 65 (136)
T 2eif_A 12 NVGSLKVGQYVMID-----G----VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 65 (136)
T ss_dssp EGGGCCTTSEEEET-----T----EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEE
T ss_pred EHHHCcCCCEEEEC-----C----EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEec
Confidence 35789999999772 1 1232 22221 33 3 123456999999999999997
No 8
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=65.36 E-value=5 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCCCCCCCCEEEEE-EEeecCCcccceEEE
Q 028968 142 PIPDIRTGDVVEIK-LEVPENRRRLSIYKG 170 (201)
Q Consensus 142 diPeFr~GDtVrV~-v~I~EnKeRiQ~FeG 170 (201)
+.+.|.+||+|+|. .++.+-+.+.|+.-|
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~ 86 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQVQVN 86 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEEEEEC
T ss_pred cccccCCCCEEEEEEEEEEEECCEEEEEEC
Confidence 57899999999998 788886666766544
No 9
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=64.99 E-value=6.6 Score=29.06 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=22.6
Q ss_pred CCCCCEEEEEEEeecCCcccceEEEEEE
Q 028968 146 IRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (201)
Q Consensus 146 Fr~GDtVrV~v~I~EnKeRiQ~FeGIVI 173 (201)
++|||++.+++++.+.+.++-.|++.+.
T Consensus 101 V~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 101 VRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 5889999999999886566777777665
No 10
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=60.95 E-value=7.3 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCCCCEEEEEEEeecCCcccceEEEEE
Q 028968 146 IRTGDVVEIKLEVPENRRRLSIYKGIV 172 (201)
Q Consensus 146 Fr~GDtVrV~v~I~EnKeRiQ~FeGIV 172 (201)
+.|||++.+++++...+..+-.|+|.+
T Consensus 111 V~PGd~L~i~v~~~~~~~~~~~~~~~~ 137 (160)
T 4h4g_A 111 VEPGDQLILNVTFERYIRGIWKFKAVA 137 (160)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 678999999999887666777777754
No 11
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=60.64 E-value=4.8 Score=31.92 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=28.3
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEeec
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn 177 (201)
.-|.|.+||.|+|.-..+-.-.|+..| .|+|.+..|
T Consensus 33 ~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 358899999999985544477888887 788887765
No 12
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=60.19 E-value=9.3 Score=29.89 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVI 173 (201)
.++|||++.+.+++.+.+.++-.|+|.+.
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 46799999999999886667777887765
No 13
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.04 E-value=8.2 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
..|.+||+|+|. ..=..-|+|+|....+
T Consensus 6 ~~f~~GD~V~V~------~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 6 SGFQPGDNVEVC------EGELINLQGKILSVDG 33 (59)
T ss_dssp SSCCTTSEEEEC------SSTTTTCEEEECCCBT
T ss_pred ccCCCCCEEEEe------ecCCCCCEEEEEEEeC
Confidence 468999999984 4556778999998875
No 14
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=56.19 E-value=21 Score=27.15 Aligned_cols=46 Identities=35% Similarity=0.482 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVE 196 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVE 196 (201)
.+.+||.|.+.+.+++..++++ .+|.|+-.+-.|-.. +--.|+||+
T Consensus 41 ~~~~G~~V~l~l~Lp~~~~~i~-~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDSSERLP-VAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp CCCTTCEEEEEEECTTCSCEEE-EEEEEEEEECC-----------CCEEEEE
T ss_pred ccCCCCEEEEEEEcCCCCceEE-EEEEEEEecCCCCCC-----CCCCceEEE
Confidence 5889999999999987655555 459999987666432 225788885
No 15
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=54.43 E-value=6.7 Score=33.32 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEeec
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn 177 (201)
.-|.|++||.|+|+-..+-.-.|+..| .|+|.+.+|
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 348999999999975555477888887 788887765
No 16
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=53.95 E-value=6.6 Score=36.63 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=32.6
Q ss_pred CCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEe
Q 028968 141 RPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRR 188 (201)
Q Consensus 141 kdiPeF-r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRK 188 (201)
..||.+ .+||+|.+|= =++|.|.|-+.+.-+.+.+++|-|=.
T Consensus 108 e~LP~V~~~GDII~Lhr------vkIq~~ng~~~~v~~~~~~SswavF~ 150 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHR------ATLRLYNGQRQFNANVFYSSSWALFS 150 (495)
T ss_dssp GGSCCCCEETCEEEEEE------EEEEEETTEEEEEEETTTTCEEEEEC
T ss_pred HHCCCCCCCCCEEEEEE------EEEEEECCcEEEEecCCCceEEEEEe
Confidence 479999 7999999972 25777888777777888778887644
No 17
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=53.93 E-value=6.7 Score=33.44 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=28.0
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceE----EEEEEEeec
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn 177 (201)
-|.|.+||.|+|.-..+-.-.|+..| +|+|.+.+|
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 58999999999985555477888887 788887764
No 18
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=53.03 E-value=36 Score=22.16 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.2
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
+|++||+|+| ...=..-|+|+|.....
T Consensus 4 ~~~~Gd~V~V------~~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 4 AFREGDQVRV------VSGPFADFTGTVTEINP 30 (58)
T ss_dssp SCCTTCEEEE------CSGGGTTCEEEEEEEET
T ss_pred ccCCCCEEEE------eecCCCCcEEEEEEEcC
Confidence 5899999998 35677889999998864
No 19
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=52.92 E-value=7.1 Score=33.40 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=27.6
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceE----EEEEEEeec
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn 177 (201)
-|.|++||.|+|+-..+-.-.|+..| .|+|.+..|
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 48999999999975555477888877 788887765
No 20
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=52.43 E-value=12 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCCCCEEEEEEEeecCCcccceEEEEEE
Q 028968 146 IRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (201)
Q Consensus 146 Fr~GDtVrV~v~I~EnKeRiQ~FeGIVI 173 (201)
.+|||++++++++.+.+..+-.|++.+.
T Consensus 121 V~pGD~L~~~v~v~~~~~g~~~~~~~~~ 148 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISVKRSIWKFDCHAT 148 (168)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 5699999999999885555666666554
No 21
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=51.48 E-value=3.1 Score=36.11 Aligned_cols=6 Identities=0% Similarity=-0.069 Sum_probs=0.0
Q ss_pred hhhccC
Q 028968 109 EEEVKA 114 (201)
Q Consensus 109 ~~~~~p 114 (201)
..+.+|
T Consensus 110 ~~p~~~ 115 (233)
T 3bbo_R 110 RPPRQQ 115 (233)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 344443
No 22
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=50.39 E-value=30 Score=31.89 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCCC--CCCCCCEEEEEEEeecCCcccceEEEEEEEeecC
Q 028968 141 RPIP--DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (201)
Q Consensus 141 kdiP--eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~ 178 (201)
..+| .|++||.|.|.- .+....+.++|+|......
T Consensus 74 ~~l~~~~~~~Gd~v~~~~---~~~~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 74 AALPSNSFTSGDIVGLYD---AANEGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCCTTCEEEEEE---TTTTSCCCEEEEEEEEETT
T ss_pred CCCccCCCCCCCEEEEEe---cCCCCCceEEEEEEEEeCC
Confidence 3566 699999998852 2445567899999988754
No 23
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=49.68 E-value=15 Score=27.96 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCCCEEEEEEEeecCCcccceEEEEEE
Q 028968 146 IRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (201)
Q Consensus 146 Fr~GDtVrV~v~I~EnKeRiQ~FeGIVI 173 (201)
.+|||++.+++++.+.+..+-.|+|.+.
T Consensus 107 V~PGd~L~i~~~v~~~~~~~~~~~~~~~ 134 (152)
T 4i83_A 107 VIPGDQLVFEVELLTSRRGIGKFNAVAK 134 (152)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 4799999999999876566667777654
No 24
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=49.36 E-value=17 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=19.5
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKG 170 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeG 170 (201)
.|++||+|+|+=++.+.+.++++.-|
T Consensus 63 ~i~~Gdvv~i~g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQGYSGLEISVD 88 (97)
T ss_dssp CCCTTCEEEEEEEEEEC--CEEEEEE
T ss_pred ccCCCCEEEEEEEEEEcCCeEEEEEC
Confidence 79999999998888776666666654
No 25
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=49.04 E-value=45 Score=24.78 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=30.5
Q ss_pred CCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeC
Q 028968 147 RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIA 191 (201)
Q Consensus 147 r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~ 191 (201)
..|.+|.++ -+.-+-+|+|++...-. .+.|+|++|++.
T Consensus 7 ~iGs~VSi~-----c~d~lGvYQG~i~~vd~--~~~tItL~~~f~ 44 (84)
T 2vc8_A 7 WLGSIVSIN-----CGDSLGVYQGRVSAVDQ--VSQTISLTRPFH 44 (84)
T ss_dssp TTTCEEEEE-----CCTTTCEEEEEEEEEET--TTTEEEEEEEEE
T ss_pred ccCCEEEEE-----ECCCceEEEEEEEEecc--CCCeEEEehhhh
Confidence 468888887 66788899999998864 357899999863
No 26
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=48.00 E-value=25 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.1
Q ss_pred CCCCCCEEEEEEEeec--CCcccceEEEEE
Q 028968 145 DIRTGDVVEIKLEVPE--NRRRLSIYKGIV 172 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E--nKeRiQ~FeGIV 172 (201)
..++||+|.+..++.+ .+.++-.+++.+
T Consensus 72 Pv~~Gd~l~~~a~v~~~~~~~~~~~v~~~~ 101 (121)
T 2f41_A 72 QVKQGERVVAKAKVTAVEKEKGRTVVEVNS 101 (121)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred CcCCCCEEEEEEEEEEEEccCCEEEEEEEE
Confidence 4689999999999994 445555555543
No 27
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=47.47 E-value=17 Score=27.21 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=20.3
Q ss_pred CCCCCCEEEEEEEeecCCccc--ceEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRL--SIYKGIV 172 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRi--Q~FeGIV 172 (201)
..+|||++++++++.+.+.+. -.|++.+
T Consensus 106 pV~pGd~l~~~~~v~~~~~~~g~~~~~~~~ 135 (154)
T 1z6b_A 106 PVLPGDTLTMQANLISFKSSLGIAKLSGVG 135 (154)
T ss_dssp CCCTTCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCceEEEEEEEE
Confidence 468899999999998833333 4666655
No 28
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=46.52 E-value=42 Score=23.65 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=33.0
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEE
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIV 198 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~ 198 (201)
.|.|++||.|--.. ..-+-|.|.|.++.+.+ +|||+- ++ |...+
T Consensus 4 ~~~~~vGd~vmArW------~D~~yYpA~I~si~~~~---~Y~V~F--~d-G~~et 47 (67)
T 3p8d_A 4 SSEFQINEQVLACW------SDCRFYPAKVTAVNKDG---TYTVKF--YD-GVVQT 47 (67)
T ss_dssp -CCCCTTCEEEEEC------TTSCEEEEEEEEECTTS---EEEEEE--TT-SCEEE
T ss_pred CcccccCCEEEEEc------CCCCEeeEEEEEECCCC---eEEEEE--eC-CceEE
Confidence 58999999998885 44578999999999874 588864 44 54443
No 29
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=46.29 E-value=16 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=27.4
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceE----EEEE-EEeecC
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIY----KGIV-MSRQNA 178 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIV-Iarrn~ 178 (201)
-|.|++||.|+|.-..+-.-.|+..| .|+| .+..|.
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~ 160 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEK 160 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSC
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccC
Confidence 58899999999985544477888777 7988 565543
No 30
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=45.92 E-value=23 Score=32.58 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeee--CCeeeEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII--AGIGVEI 197 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs--~GVGVER 197 (201)
.+.+||.|+|.. +. ..|+|+++-+...+ +..+.|-|+. |++|+.+
T Consensus 15 ~~~~gd~~~~~~-----~~--~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~ 61 (435)
T 2d6f_A 15 SIDVGDMVLVEK-----PD--VTYEGMVLDRADDA-DDRHIVLKLENGYNIGVEI 61 (435)
T ss_dssp TCCTTCEEEEEC-----SS--CEEEEEECCCCTTS-CSSEEEEECTTSCEEEEEC
T ss_pred CCCCCCEEEEEE-----CC--eEEEEEEecCcccC-CCCeEEEEccCceeeeecc
Confidence 478899999863 22 89999999766544 4455555765 4567654
No 31
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=43.27 E-value=42 Score=25.83 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=30.1
Q ss_pred CCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeee-CCe
Q 028968 147 RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII-AGI 193 (201)
Q Consensus 147 r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs-~GV 193 (201)
..|..|.|+- .+-+-+|+|.|++.. ..++|++|.+ +|+
T Consensus 10 wiG~~VSI~C-----~d~LGVyQG~I~~V~----~~~ItL~kaFrNGi 48 (103)
T 2rm4_A 10 WIGCAVSIAC-----DEVLGVFQGLIKQIS----AEEITIVRAFRNGV 48 (103)
T ss_dssp GTTCEEEEEE-----CTTTCEEEEEEEEEE----TTEEEEEEEEETTE
T ss_pred eeceEEEEee-----CCcceEeeEEEEEcc----cceeEEhhhhhcCc
Confidence 4688888874 367889999999988 4679999986 455
No 32
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=43.15 E-value=19 Score=24.62 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=16.6
Q ss_pred CCCCCCEEEEEEEeec-CCcccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ 166 (201)
.|++||.|+|.+.-.. ++.|+.
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i~ 67 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREID 67 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEEE
T ss_pred eeCCCCEEEEEEEEEECCCCEEE
Confidence 4999999999887554 556654
No 33
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=41.52 E-value=28 Score=24.52 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
..++||+|.+..++.+
T Consensus 87 Pv~~Gd~l~~~~~v~~ 102 (134)
T 1iq6_A 87 PVFVGDEVTAEVEVTA 102 (134)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4689999999999987
No 34
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=41.20 E-value=16 Score=30.30 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.8
Q ss_pred CCCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEeecCC
Q 028968 140 ERPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179 (201)
Q Consensus 140 kkdiPeF-r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G 179 (201)
...+|.+ .+||+|.+|= =++|.|.|-+.+.-+.+
T Consensus 94 ~e~LP~V~~~GDIIlL~r------vkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 94 GNDLPVIKQVGQPLLLHQ------ITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp SSCSCCCCSTTCEEEEEE------EEEEEETTEEEEEEEEE
T ss_pred hhhCCCCCCCCCEEEEEE------EEEEEECCeEEEEEcCc
Confidence 3579998 9999999983 25666766666665554
No 35
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=38.44 E-value=23 Score=25.98 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccce
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTT 183 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sT 183 (201)
.|++||.|+|.+.-.. ++.|++ +..+...+++.
T Consensus 67 ~~~~Gd~V~vkV~~vd~~~~~i~------Lslk~~~l~~~ 100 (119)
T 1wi5_A 67 KLKVGQYLNCIVEKVKGNGGVVS------LSVGHSEVSTA 100 (119)
T ss_dssp CCCTTCEEEEEEEECCTTSCEEE------EECCCCCSCCC
T ss_pred EeCCCCEEEEEEEEEeCCCCEEE------EEEchhhcccc
Confidence 4999999999876554 444443 34444444443
No 36
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=37.48 E-value=40 Score=25.99 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=19.9
Q ss_pred CCCCCCEEEEEEEeec--CCcccceEEEEE
Q 028968 145 DIRTGDVVEIKLEVPE--NRRRLSIYKGIV 172 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E--nKeRiQ~FeGIV 172 (201)
..++||+|.+..++.+ .+.++..+++.+
T Consensus 108 PV~~GD~L~a~a~v~~~~~~~~~~~v~~~~ 137 (157)
T 2f3x_A 108 QVKQGERVVAKAKVTAVEKEKGRTVVEVNS 137 (157)
T ss_dssp CCBTTCEEEEEEEEEEEETGGGEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEEccCCEEEEEEEE
Confidence 4689999999999995 445554555444
No 37
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=36.70 E-value=41 Score=25.56 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCCCCCEEEEEEEeecCC-cccceEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENR-RRLSIYKGIVM 173 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnK-eRiQ~FeGIVI 173 (201)
..++||+|.+..++...+ .|...+++.+.
T Consensus 99 PV~~GD~L~a~a~v~~~~~~~~~~v~~~~~ 128 (152)
T 3bnv_A 99 PLKLGDVLELEAHALFDETSKKRDVKVVGH 128 (152)
T ss_dssp CCBTTCEEEEEEEECCCSSCSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEcCCcEEEEEEEEE
Confidence 467999999999999855 56666665543
No 38
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=35.97 E-value=73 Score=24.28 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCe
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGI 193 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GV 193 (201)
...|.+||.|+|. ..-..-|+|+|....+.. ...+|.=...|-
T Consensus 89 ~~~~~~Gd~VrI~------~Gpf~g~~g~V~~vd~~k--~~v~V~v~~~gr 131 (152)
T 3p8b_B 89 VSGLEPGDLVEVI------AGPFKGQKAKVVKIDESK--DEVVVQFIDAIV 131 (152)
T ss_dssp TTTCCTTCEEEEC------SSTTTTCEEEEEEEETTT--TEEEEEESSCSS
T ss_pred cccCCCCCEEEEe------eecCCCCEEEEEEEeCCC--CEEEEEEEecce
Confidence 4579999999984 466888999999987654 345555444453
No 39
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=35.35 E-value=66 Score=24.71 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCC--ccceEEEEeeeCCeeeEEEee
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG--IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G--i~sTFTVRKIs~GVGVER~FP 200 (201)
..+||.|.+|.+. .+.=...-+=-.+-|+| ---.+.+|++..|--+|++|+
T Consensus 11 ~~~lrkG~~i~~~-------g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~ 63 (136)
T 1bkb_A 11 AGELKEGSYVVID-------GEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLP 63 (136)
T ss_dssp GGGCCTTCEEEET-------TEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEE
T ss_pred HHHccCCCEEEEC-------CEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEc
Confidence 3579999998763 11111111112223442 223566999999999999997
No 40
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=35.35 E-value=35 Score=31.39 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeee--CCeeeEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII--AGIGVEI 197 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs--~GVGVER 197 (201)
.+.+||.|+|... +-.--..|+|+++-+...+ +..+.|-|+. |++|+.+
T Consensus 11 ~~~~gd~v~~~~~---~~~~~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~ 61 (438)
T 1zq1_A 11 NINVGDFVRITKE---EDGEEVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIAL 61 (438)
T ss_dssp TCCTTCEEEEEEE---SSSSEEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEG
T ss_pred CCCCCCEEEEEEC---CCcceeEEEEEEecCcccC-CCCeEEEEccCCceeeech
Confidence 3778999998753 2122358999999765544 3445555665 4566643
No 41
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=34.69 E-value=27 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=16.4
Q ss_pred CCCCCCCEEEEEEEeecCCc
Q 028968 144 PDIRTGDVVEIKLEVPENRR 163 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKe 163 (201)
-.+.|||++++.+++.+.+.
T Consensus 76 ~~V~PGD~l~l~v~~~~~~~ 95 (129)
T 3esi_A 76 QPILPGKTLRLVLIWHAGKQ 95 (129)
T ss_dssp SCCCTTCEEEEEEEEETTTT
T ss_pred cccCCCCEEEEEEEEEecCC
Confidence 35789999999999987544
No 42
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=33.88 E-value=30 Score=24.27 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.5
Q ss_pred cccceEEEEEEEeecC-CccceEEEEee-eCCeeeEEEe
Q 028968 163 RRLSIYKGIVMSRQNA-GIHTTIRIRRI-IAGIGVEIVF 199 (201)
Q Consensus 163 eRiQ~FeGIVIarrn~-Gi~sTFTVRKI-s~GVGVER~F 199 (201)
.|.|.|-|+|...... | ..++.+||- .-|-++|-.-
T Consensus 3 ~~~~~fvG~V~~~~~~~g-~~~ie~rN~f~~GD~iEi~~ 40 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETG-IATVQQRNHFRPGDEVEFFG 40 (89)
T ss_dssp CSGGGCSEEEEEEETTTT-EEEEEESSCBCTTCEEEEES
T ss_pred ccccEEEEEEEEEeCCCC-EEEEEEcCCcCCCCEEEEEc
Confidence 4778899999887544 4 456778874 4588888653
No 43
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.74 E-value=81 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 141 RPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
+.+|.-.+||+|.|.++-.-...|=+++.++|+..+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCCCCcCceEEEEEEEeCC
Confidence 4578899999999999865534478999999998664
No 44
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=33.67 E-value=25 Score=27.40 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.7
Q ss_pred CCCCCCCEEEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPE 160 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E 160 (201)
-.+++||+|++.++|.+
T Consensus 114 ~PV~~GDtl~~~~~V~~ 130 (159)
T 3k67_A 114 SPVRIGDVVRVEGVVSG 130 (159)
T ss_dssp SCCCTTCEEEEEEEEEE
T ss_pred CCcCCCCEEEEEEEEEE
Confidence 35789999999999987
No 45
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=32.51 E-value=63 Score=25.16 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEEEeecC---CcccceEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPEN---RRRLSIYKGIVMSRQN 177 (201)
Q Consensus 145 eFr~GDtVrV~v~I~En---KeRiQ~FeGIVIarrn 177 (201)
.-..||+|.|.++-.-. .++=|++.++|+..+.
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk 67 (122)
T 3r8s_K 32 YAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKK 67 (122)
T ss_dssp CBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS
T ss_pred cccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 46799999999985442 3445999999998664
No 46
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=31.81 E-value=70 Score=25.25 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=29.4
Q ss_pred CCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEee
Q 028968 141 RPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ 176 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarr 176 (201)
+.+|.-.+||+|.|.++-.-...|=|++.++|+..+
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtk 77 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQR 77 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECS
T ss_pred cccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcC
Confidence 467888999999999886553348899999999865
No 47
>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase FLK, hot DOG folding, thioeste hydrolase; 1.50A {Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3p2q_A 3p2r_A 3p2s_A 3kv7_A 3kv8_A 3kvz_A* 3kw1_A* 3kx7_A 3kx8_A 3kvi_A 3p3i_A 3p3f_A
Probab=31.80 E-value=42 Score=26.00 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.0
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEE
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIa 174 (201)
-.-.+||+|.+..++.+-..|...|+-.|-.
T Consensus 78 apt~~G~~V~~~a~l~~v~gr~~~f~v~a~d 108 (139)
T 3kuv_A 78 AATPPGLTVTVTAELRSVEGRRLSWRVSAHD 108 (139)
T ss_dssp SCCCTTSEEEEEEEEEEEETTEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEEEECCCEEEEEEEEEE
Confidence 3567899999999999966788888876654
No 48
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, hot-DOG superfamily; 1.25A {Thermanaerovibrio acidaminovorans}
Probab=31.65 E-value=48 Score=25.68 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=26.4
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEee
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ 176 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarr 176 (201)
-.-.+||+|.+..++.+-..|...|+-.|..-.
T Consensus 77 apt~~G~~V~~~a~v~~v~gr~v~f~v~a~d~~ 109 (138)
T 3qoo_A 77 APAVLGDDVTFTVTVDRVEGNRVVLSMKADDPH 109 (138)
T ss_dssp SCCBTTCEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred CCCCCCCEEEEEEEEEEEcCCEEEEEEEEEECC
Confidence 456789999999999995568888988876633
No 49
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=31.37 E-value=36 Score=24.55 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.1
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
.|++||.|+|.+.-..
T Consensus 75 ~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 75 VLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SCCTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 4999999999886554
No 50
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=30.93 E-value=36 Score=24.89 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=16.1
Q ss_pred CCCCCCEEEEEEEeec-CCcccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ 166 (201)
.|++||.|+|.+.-.. .+.|+.
T Consensus 75 ~~~vGd~V~vkV~~vd~~~~rI~ 97 (115)
T 2khi_A 75 VVNVGDVVEVMVLDIDEERRRIS 97 (115)
T ss_dssp TCCTTCEEEEEEEEEETTTTEEE
T ss_pred EECCCCEEEEEEEEEECCCCEEE
Confidence 4999999999987554 455543
No 51
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural genomics, unknown funct; 1.94A {Pyrococcus horikoshii} SCOP: d.38.1.5
Probab=30.74 E-value=52 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVI 173 (201)
..++||+|.+..++.+..+|...+++.|.
T Consensus 80 pv~~Gd~l~~~~~v~~~~~~~~~~~~~v~ 108 (131)
T 1ixl_A 80 PVKVGDKLVAKAKIIEDLGKKKIVEVKVY 108 (131)
T ss_dssp CCBTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEecCcEEEEEEEEE
Confidence 46789999999999985556667777665
No 52
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=30.60 E-value=27 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=17.7
Q ss_pred CCCCCEEEEE-EEeecCCcccceEE
Q 028968 146 IRTGDVVEIK-LEVPENRRRLSIYK 169 (201)
Q Consensus 146 Fr~GDtVrV~-v~I~EnKeRiQ~Fe 169 (201)
|.+||+|+|. -++.+-+.+.|+.-
T Consensus 60 l~~Gdvv~i~ng~v~~~~g~~~L~v 84 (106)
T 2k75_A 60 LQDSDVVRIDNARVAQFNGYLSLSV 84 (106)
T ss_dssp CCTTEEEEEEEEEEEEETTEEEEEE
T ss_pred cCCCCEEEEEeeEEeEECCEEEEEE
Confidence 9999999998 66666555555543
No 53
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=30.52 E-value=1.7e+02 Score=22.44 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCee
Q 028968 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 194 (201)
Q Consensus 121 klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVG 194 (201)
.+..||+.|+.. . +....+...++||.+.+.+. ++. +-|.|.|+...+.| ++.|+-+-+|--
T Consensus 27 ~L~~L~~~l~~~--~--~~~p~~~~~~~G~~c~A~~~--~d~---~wyRa~I~~~~~~~---~~~V~fvDyGn~ 88 (169)
T 3ntk_A 27 ALEQMTDKLLDA--E--QDLPAFSDLKEGALCVAQFP--EDE---VFYRAQIRKVLDDG---KCEVHFIDFGNN 88 (169)
T ss_dssp HHHHHHHHHHHH--G--GGCCBCCCCCTTCEEEEEET--TTT---EEEEEEEEEECSTT---CEEEEETTTTEE
T ss_pred HHHHHHHHHHHH--H--hcCCCCCCCCCCCEEEEEEC--CCC---cEEEEEEEEECCCC---EEEEEEEecCCe
Confidence 366677666421 1 12345668999999988762 222 57999999987654 788988877754
No 54
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=30.29 E-value=84 Score=24.26 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCC--ccceEEEEeeeCCeeeEEEee
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG--IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G--i~sTFTVRKIs~GVGVER~FP 200 (201)
+||.|.+|.+.= .--++--|+ -.+-|+| ---.+.+|++..|--+|++||
T Consensus 11 ~lrkG~~i~~~g----~p~~Vve~~---~~KpGKgG~A~vr~k~knl~TG~~~e~tf~ 61 (138)
T 3cpf_A 11 ALRKNGFVVLKG----RPCKIVEMS---TSKTGKHGHAKVHLVGIDIFTGKKYEDICP 61 (138)
T ss_dssp GCCTTSEEEETT----EEEEEEEEE---EECC----CCEEEEEEEETTTCCEEEEEEE
T ss_pred HCcCCCEEEECC----EEEEEEEEE---eccCCCCccEEEEEEEEECCCCCEEEEEeC
Confidence 689998887630 001111111 1222332 223467999999999999997
No 55
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=29.29 E-value=82 Score=24.37 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEE----eecC-Cc-cceEEEEeeeCCeeeEEEee
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMS----RQNA-GI-HTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIa----rrn~-Gi-~sTFTVRKIs~GVGVER~FP 200 (201)
..+||.|.+|.+. + + .| .|+. +-|+ |- --...+|++..|.-+|++|+
T Consensus 9 a~~lkkG~~i~~~-----g--~--p~--~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~ 61 (138)
T 1iz6_A 9 VSKLKPGRYIIID-----D--E--PC--RIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61 (138)
T ss_dssp GGGCCTTSEEEET-----T--E--EE--EEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEE
T ss_pred HHHccCCCEEEEC-----C--E--EE--EEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEec
Confidence 3578999988763 1 1 11 1222 2233 31 24566899999999999997
No 56
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=28.89 E-value=98 Score=25.07 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecC-C-ccceEEEEeeeCCeeeEEEee
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA-G-IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~-G-i~sTFTVRKIs~GVGVER~FP 200 (201)
+||.|.+|.+. .+.=...-+=..+-|+ | .--.+.+|+|..|--+|++||
T Consensus 33 dlrkG~~I~id-------G~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~ 83 (167)
T 3hks_A 33 NIRKGGHIVIK-------NRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 83 (167)
T ss_dssp GCCTTSEEEET-------TEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEE
T ss_pred HccCCCEEEEC-------CEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEc
Confidence 79999988763 1111111111234455 3 123566999999999999997
No 57
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A 3k67_A
Probab=27.00 E-value=63 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=19.8
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEE
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIV 172 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIV 172 (201)
-.+++||+|.+..++.+.+.++=.++..|
T Consensus 114 ~PV~~GD~L~~~~~v~~~~~~~v~~~~~~ 142 (159)
T 2b3n_A 114 SPVRIGDVVRVEGVVSGVEKNRYTIDVKC 142 (159)
T ss_dssp SCCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEEEEEEEEEcCCEEEEEEEE
Confidence 35689999999999986333344455544
No 58
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Probab=26.77 E-value=96 Score=23.24 Aligned_cols=31 Identities=6% Similarity=-0.059 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEe
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIar 175 (201)
..++||+|.+..++.+-..|.+.|+-.|..-
T Consensus 73 pv~~G~~V~a~a~~~~~~~~~~~~~v~i~d~ 103 (141)
T 2cwz_A 73 SALPGMRVRVVARHEKTEGNRVYARVEAYNE 103 (141)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred cCCCCCEEEEEEEEEEECCCEEEEEEEEEEC
Confidence 4568999999999988666788898777643
No 59
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens}
Probab=26.30 E-value=73 Score=23.69 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCCCCCCEEEEEEEeecC
Q 028968 144 PDIRTGDVVEIKLEVPEN 161 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~En 161 (201)
-.+++||+|.+..++.+.
T Consensus 96 ~PV~~Gd~l~~~~~v~~~ 113 (148)
T 3ir3_A 96 APLYIGEVVLASAEVKKL 113 (148)
T ss_dssp SCCBTTCEEEEEEEEEEE
T ss_pred CCcCCCCEEEEEEEEEEE
Confidence 357899999999999873
No 60
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=25.89 E-value=59 Score=23.16 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecC
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~ 178 (201)
.|++||-|+|- ..|-+=-.|+|++..+.
T Consensus 17 ~F~~GDHVkVi------~G~~~getGlVV~v~~d 44 (69)
T 2do3_A 17 YFKMGDHVKVI------AGRFEGDTGLIVRVEEN 44 (69)
T ss_dssp SCCTTCEEEES------SSTTTTCEEEEEEECSS
T ss_pred eccCCCeEEEe------ccEEcCceEEEEEEeCC
Confidence 59999999884 24777778999998854
No 61
>2h4u_A Thioesterase superfamily member 2; structural genomics, structural genomics consortium, SGC, hydrolase; 2.20A {Homo sapiens} SCOP: d.38.1.5
Probab=25.54 E-value=74 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIa 174 (201)
..++||+|.+..++....+|...+++.|..
T Consensus 98 pv~~Gd~l~~~a~v~~~gr~~~~~~~~i~~ 127 (145)
T 2h4u_A 98 PAKLGEDIVITAHVLKQGKTLAFTSVDLTN 127 (145)
T ss_dssp CCBTTCEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEcCCcEEEEEEEEEE
Confidence 356899999999998866677777776654
No 62
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=25.51 E-value=99 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRI 186 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTV 186 (201)
.|.+|+.|+|.+ +.+ .+|.|+|-.....|-..+.||
T Consensus 56 ~~~~G~~v~v~i----G~~--~v~~G~Vd~v~~~~~~~~~~i 91 (361)
T 3cdd_A 56 PIKQGQACTVDI----GGE--RVITGYVDDWVPSYDESTITI 91 (361)
T ss_dssp CCCTTCEEEEEE----TTE--EEEEEEEEEEEEEECSSEEEE
T ss_pred ccCCCCEEEEEE----CCe--EEEEEEEeeEEccCCCCceEE
Confidence 567999999987 222 699999998876654434444
No 63
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=25.02 E-value=91 Score=22.64 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=14.4
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
.+++||+|++..+|.+
T Consensus 99 PV~~Gd~l~~~~~v~~ 114 (151)
T 2c2i_A 99 PVPVGSRVRATSSLVG 114 (151)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEEE
Confidence 5789999999999987
No 64
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=24.76 E-value=77 Score=23.16 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCCCCCEEEEEEEeecC-CcccceEEE
Q 028968 145 DIRTGDVVEIKLEVPEN-RRRLSIYKG 170 (201)
Q Consensus 145 eFr~GDtVrV~v~I~En-KeRiQ~FeG 170 (201)
.+.+||+|+++=++.+. ...+++.-|
T Consensus 66 ~l~~Gdvv~i~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREGYYGGLECTAN 92 (105)
T ss_dssp CCCTTCEEEEEEEEEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEEEEEEccCCCEEEEeC
Confidence 79999999998888884 446777766
No 65
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=24.54 E-value=54 Score=24.29 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.2
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
..++||+|.+..++.+
T Consensus 106 PV~~Gd~l~~~~~v~~ 121 (161)
T 1q6w_A 106 PVFIGDTIAASAEVVE 121 (161)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4689999999999977
No 66
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=24.49 E-value=1.1e+02 Score=23.83 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEEeec---CCcccceEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE---NRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E---nKeRiQ~FeGIVIarrn 177 (201)
.-..||+|.|.++-.- ..++=|++.++|+..+.
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk 67 (122)
T 3v2d_O 32 YATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKK 67 (122)
T ss_dssp CBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSS
T ss_pred ccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 4679999999998543 34567899999998664
No 67
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.40 E-value=1.5e+02 Score=21.28 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCee
Q 028968 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 194 (201)
Q Consensus 121 klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVG 194 (201)
++..||+.|++ ..... ......+++||.+.+.+ .++. +-|.+.|+...+. .+++|+=+-+|--
T Consensus 11 ~l~~L~~~m~~-~y~~~--~~~~~~~~~G~~c~a~~--~~d~---~wyRA~V~~~~~~---~~~~V~fvDyGn~ 73 (110)
T 2diq_A 11 QLDKLVNEMTQ-HYENS--VPEDLTVHVGDIVAAPL--PTNG---SWYRARVLGTLEN---GNLDLYFVDFGDN 73 (110)
T ss_dssp HHHHHHHHHHH-HHTTS--CCCCCCCCTTCEEEECC--TTTC---SCEEEEECCCCSS---SCEEEEETTTCCE
T ss_pred HHHHHHHHHHH-HHccC--CCCCCCCCCCCEEEEEE--CCCC---eEEEEEEEEECCC---CeEEEEEEeCCCe
Confidence 46677777642 12211 22334689999987754 2322 5799999988753 4788988877754
No 68
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=24.17 E-value=1.6e+02 Score=23.83 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeecC-Cc-cceEEEEeeeCCeeeEEEee
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA-GI-HTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~-Gi-~sTFTVRKIs~GVGVER~FP 200 (201)
-+||.|.+|.+. .+.=...-+=..+-|+ |- --.+.+|+|..|.-+|++||
T Consensus 34 ~dlrkG~~I~id-------G~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~ 85 (167)
T 3er0_A 34 SALRKNGFVVIK-------SRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSP 85 (167)
T ss_dssp TTCCTTCEEEET-------TEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEE
T ss_pred HHccCCCEEEEC-------CEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEc
Confidence 479999998873 1111111111223344 32 23466999999999999997
No 69
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=24.09 E-value=1.8e+02 Score=24.29 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCCEEEEEEEeecCCcccceEE--------EEEEEeecCCccceEEEEeeeCCeeeEEEee
Q 028968 148 TGDVVEIKLEVPENRRRLSIYK--------GIVMSRQNAGIHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 148 ~GDtVrV~v~I~EnKeRiQ~Fe--------GIVIarrn~Gi~sTFTVRKIs~GVGVER~FP 200 (201)
+-|++.|+++ ....|-|+ =--|...|.-+..+|+|.++..|-.|+++++
T Consensus 76 ~~dti~v~i~----G~t~~dfeV~PY~~I~~~~~~~~g~~v~asf~v~~~~~~~~i~~v~l 132 (202)
T 4fxt_A 76 SNDTIYITVR----GNTVQDIPVTPYFFVRNVSFAKNGNKITARFTINKVVANANMENVGI 132 (202)
T ss_dssp SSCEEEEEES----SSEECCEECCBSEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCceEEEEEC----CCeEEeEEEeeeEEEecceEEccCCEEEEEEEEEeccCCCCeeEEEE
Confidence 8899998873 33333333 2336667778999999999998988999875
No 70
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=24.08 E-value=1.8e+02 Score=20.11 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCee
Q 028968 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 194 (201)
Q Consensus 120 ~klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVG 194 (201)
.+|..||+.|++ ..+.. ....-..++||.+.+.+ .++ -+-|.+.|++..+. .++.|+-+-+|--
T Consensus 5 ~~Le~Lm~~m~~-~y~~~--~~~~~~~~~G~~c~a~~--~~d---~~wyRA~I~~~~~~---~~~~V~fvDyGn~ 68 (94)
T 3fdr_A 5 LQLDKLVNEMTQ-HYENS--VPEDLTVHVGDIVAAPL--PTN---GSWYRARVLGTLEN---GNLDLYFVDFGDN 68 (94)
T ss_dssp CHHHHHHHHHHH-HHTTC--CCCCCCCCTTCEEEEEE--TTT---TEEEEEEEEEECTT---SCEEEEETTTCCE
T ss_pred HHHHHHHHHHHH-HHhcC--CCCCCCCCCCCEEEEEE--CCC---CeEEEEEEEEECCC---CeEEEEEEcCCCe
Confidence 356677776631 22221 11223578999998876 232 35899999998753 4688888877653
No 71
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=23.59 E-value=96 Score=25.23 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCC--ccceEEEEeeeCCeeeEEEee
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG--IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G--i~sTFTVRKIs~GVGVER~FP 200 (201)
-+||.|.+|.+. .|.=...-+=..+-|+| .--.+.+|+|..|--+|++||
T Consensus 34 ~dlrkG~~I~id-------G~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~ 85 (174)
T 1x6o_A 34 GALKKGGYVCIN-------GRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAP 85 (174)
T ss_dssp GGCCTTCEEEET-------TEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEE
T ss_pred HHccCCCEEEEC-------CEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeC
Confidence 378999888763 11111111111222442 123567999999999999998
No 72
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=23.56 E-value=1.1e+02 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=17.7
Q ss_pred CCCCCCCEEEEEEEeec-CCcccce
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSI 167 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~ 167 (201)
-..+.||+|.|..++.+ ++.++..
T Consensus 65 ~~~~~gd~v~v~~~v~~~~~~~~~~ 89 (128)
T 2egj_A 65 KPLFYDDVFEVHLNLEELSRFTFTF 89 (128)
T ss_dssp SCCCTTCEEEEEEEEEEECSSEEEE
T ss_pred CCCcCCCEEEEEEEEEEeCCcEEEE
Confidence 34678999999999988 6544443
No 73
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=23.54 E-value=1.5e+02 Score=21.81 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEE
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIV 198 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~ 198 (201)
.-+.|.+||.|--.+ .--+-|.+.|.++.+.| +|||+= ++ |+..+
T Consensus 18 ~~~~f~vGd~VlArW------~D~~yYPAkI~sV~~~~---~YtV~F--~D-G~~et 62 (85)
T 3qii_A 18 GSSEFQINEQVLACW------SDCRFYPAKVTAVNKDG---TYTVKF--YD-GVVQT 62 (85)
T ss_dssp ---CCCTTCEEEEEC------TTSCEEEEEEEEECTTS---EEEEEE--TT-SCEEE
T ss_pred CCcccccCCEEEEEe------CCCCEeeEEEEEECCCC---eEEEEE--eC-CCeEE
Confidence 357899999998876 34468999999999875 588863 44 55443
No 74
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=22.84 E-value=51 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
-+|.-.+||+|.|.++-.-..-|-|++.++|+..+.
T Consensus 48 r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRtkk 83 (137)
T 3u5e_V 48 RLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAK 83 (137)
T ss_dssp CCCEECTTCEEEEECSSBCTTTTTSCEEEEEEECCS
T ss_pred ccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEecc
Confidence 468889999999998644433477999999998664
No 75
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=22.72 E-value=61 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=15.3
Q ss_pred CCCCCCEEEEEEEeec-CCccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRL 165 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRi 165 (201)
.|++||.|+|.+.-.. .+.|+
T Consensus 51 ~~~vGd~V~vkV~~vd~~~~kI 72 (130)
T 2k4k_A 51 HLSVGDEVQVKVLAVDEEKGKI 72 (130)
T ss_dssp TCCTTCEEEEEEEEEETTTTEE
T ss_pred cCCCCCEEEEEEEEEeCCCCEE
Confidence 4999999999887554 34444
No 76
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=22.59 E-value=1.2e+02 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecC
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~ 178 (201)
.|.+||.|+|. ..=+.-|+|+|....+.
T Consensus 127 ~~~~Gd~V~V~------~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 127 LFEPGEMVRVN------DGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCTTEEEEEC------SSTTTTEEEEEEEEETT
T ss_pred cCCCCCEEEEe------ccCCCCcEEEEEEEeCC
Confidence 68999999984 46688899999998653
No 77
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP} SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Probab=22.58 E-value=1.2e+02 Score=20.98 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.7
Q ss_pred CCCCCCEEEEEEEeec-CCcccceE
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLSIY 168 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ~F 168 (201)
..+.||.|.|..++.+ ++.++...
T Consensus 71 p~~~gd~v~v~~~v~~~~~~s~~~~ 95 (141)
T 1lo7_A 71 TASYDDVLTIETCIKEWRRKSFVQR 95 (141)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEE
T ss_pred CCCCCCEEEEEEEEEEEcceEEEEE
Confidence 4678999999999988 66655544
No 78
>2prx_A Thioesterase superfamily protein; ZP_00837258.1, structural joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.50A {Shewanella loihica}
Probab=22.43 E-value=98 Score=22.67 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIa 174 (201)
..++||+|.+..++.+...|.-.+++.|..
T Consensus 107 pv~~gd~l~~~a~v~~~g~~~~~~~~~i~~ 136 (160)
T 2prx_A 107 PTPMGVELELVGEIKEVKPRKVVVEIALSA 136 (160)
T ss_dssp CCBTTSCEEEEEEEEEC--CEEEEEEEEEC
T ss_pred CcCCCCEEEEEEEEEEecCCEEEEEEEEEE
Confidence 467899999999999877788888887764
No 79
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=22.33 E-value=43 Score=28.30 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=15.9
Q ss_pred CCCCCC-CCCCEEEEE-EEeec
Q 028968 141 RPIPDI-RTGDVVEIK-LEVPE 160 (201)
Q Consensus 141 kdiPeF-r~GDtVrV~-v~I~E 160 (201)
..+|.+ .+||+|+++ ++|..
T Consensus 62 ~~LP~v~~~GDII~l~~vki~~ 83 (294)
T 1xjv_A 62 EALPIIYKNGDIVRFHRLKIQV 83 (294)
T ss_dssp GGSCCCCSTTCEEEEEEEEEEE
T ss_pred HHCCCCCCCCCEEEEEEEEEEE
Confidence 469998 999999998 55444
No 80
>2bi0_A Hypothetical protein RV0216; conserved hypothetical, hotdog-fold, structural proteomics in europe, spine, structural genomics; 1.9A {Mycobacterium tuberculosis} SCOP: d.38.1.4 d.38.1.4
Probab=22.27 E-value=56 Score=28.32 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=14.6
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
..++||||.+..+|.+
T Consensus 282 PV~~GDtl~~~~eV~~ 297 (337)
T 2bi0_A 282 PVHEGDTLYSELHIES 297 (337)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEEE
Confidence 5899999999999977
No 81
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=21.90 E-value=1.2e+02 Score=21.22 Aligned_cols=24 Identities=4% Similarity=0.162 Sum_probs=18.7
Q ss_pred CCCCCCCEEEEEEEeec-CCcccce
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSI 167 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~ 167 (201)
-..+.||.|.|..++.+ ++.++..
T Consensus 68 ~p~~~gd~v~v~t~v~~~~~~s~~~ 92 (135)
T 3r87_A 68 DGVEFAEICDIRTSFTLDGKYKTLW 92 (135)
T ss_dssp SCCCTTCEEEEEEEEEEETTTEEEE
T ss_pred CcccCCCEEEEEEEEEEeCCEEEEE
Confidence 34677999999999998 6666544
No 82
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=21.84 E-value=47 Score=26.54 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCCCCCCCCCEEEEEEEe
Q 028968 141 RPIPDIRTGDVVEIKLEV 158 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I 158 (201)
-+.|.+..||+|.|||.-
T Consensus 22 G~~p~~~~G~~V~vhY~g 39 (165)
T 2lkn_A 22 GELPDFQDGTKATFHYRT 39 (165)
T ss_dssp SCCCCCCTTCEEEEECEE
T ss_pred CCCCCCCCCCEEEEEEEE
Confidence 357889999999999974
No 83
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=21.50 E-value=49 Score=23.59 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.2
Q ss_pred CCCCCCCCEEEEEE
Q 028968 143 IPDIRTGDVVEIKL 156 (201)
Q Consensus 143 iPeFr~GDtVrV~v 156 (201)
+|+.++||.|-||+
T Consensus 33 v~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 33 MPDTKPGDWVIVHT 46 (75)
T ss_dssp STTCCTTCEEEEET
T ss_pred eCCCCCCCEEEEec
Confidence 47889999999995
No 84
>1wlu_A PAAI protein, phenylacetic acid degradation protein PAAI; thioesterase, hot DOG fold, S genomics; 1.45A {Thermus thermophilus HB8} SCOP: d.38.1.5 PDB: 1j1y_A 1wlv_A* 1wm6_A 1wn3_A* 2dsl_A
Probab=21.39 E-value=1.2e+02 Score=21.34 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIa 174 (201)
..++||+|.+..++.+...|.-.+++.|..
T Consensus 73 p~~~Gd~l~~~~~v~~~g~~~~~~~~~i~~ 102 (136)
T 1wlu_A 73 PLGAGARVEARAVEVNLSRRTATYRVEVVS 102 (136)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEECCCcEEEEEEEEEE
Confidence 457899999999999855566666666654
No 85
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=21.38 E-value=70 Score=23.91 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=14.1
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
.+++||+|.+.++|.+
T Consensus 91 PV~~GD~L~~~~~v~~ 106 (154)
T 3exz_A 91 PTRPGDELHVETTVLA 106 (154)
T ss_dssp CCCTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4689999999999976
No 86
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=21.13 E-value=1.6e+02 Score=24.03 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCC-ccceEEEEeeeCCeeeEEEee
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG-IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G-i~sTFTVRKIs~GVGVER~FP 200 (201)
...+||.|.+|.+. .+.-...-+=-.+-|+| ---...+|++..|--+|++|+
T Consensus 8 ~a~dlkkG~~I~~d-------G~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~ 60 (191)
T 3tre_A 8 STNEFRGGLKVMVD-------GDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFK 60 (191)
T ss_dssp EGGGCCTTCEEEET-------TEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE
T ss_pred EHHHCCCCCEEEEC-------CEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeC
Confidence 35689999998763 11111111112333444 123355899999999999997
No 87
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=1.7e+02 Score=21.57 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEee
Q 028968 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 121 klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FP 200 (201)
++.+.|..+.. ..+...-..++||.|.+.+. +++ |-|.|-|++....+. +.|.-+ ..|.+-++|
T Consensus 3 ~L~e~M~~~~~------~s~~~~~~~k~g~~vaak~~--d~n---~WyRakV~~v~~~~~---veVl~~--DyGn~~~V~ 66 (85)
T 2eqk_A 3 SGSSGMIAAYE------NSKWEPVKWENDMHCAVKIQ--DKN---QWRRGQIIRMVTDTL---VEVLLY--DVGVELVVN 66 (85)
T ss_dssp CCCCCHHHHHH------HSCCCCCCCCSSCEEEEECS--SSC---CEEEEEEEEECSSSE---EEEECT--TTCCEEEEE
T ss_pred cHHHHHHHHhc------cCCCcccCccCCCEEEEEeC--CCC---eEEEEEEEEecCCCe---EEEEEE--ccCCEEEEE
Confidence 35566766532 22233347899999998765 422 899999999987664 667655 445554544
No 88
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=20.94 E-value=1.3e+02 Score=26.05 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccc--eEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHT--TIRIR 187 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~s--TFTVR 187 (201)
.|.+|+.|+|.+ +-+ .+|+|+|-....+|-.. +++++
T Consensus 52 ~~~~G~~i~v~i----G~~--~v~~G~Vd~v~~~~~~~~~ti~v~ 90 (381)
T 3d37_A 52 PDLSGESCEVVI----DGQ--IVMTGIIGSQRHGKSKGSRELSLS 90 (381)
T ss_dssp CCCTTCEEEEEE----TTE--EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ccCCCCEEEEEE----CCe--EEEEEEEeEEEeeecCCCcEEEEE
Confidence 467999999987 222 69999999888665433 44444
No 89
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=20.82 E-value=62 Score=23.67 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=16.3
Q ss_pred CCCCCCEEEEE-EEeecCCcccce
Q 028968 145 DIRTGDVVEIK-LEVPENRRRLSI 167 (201)
Q Consensus 145 eFr~GDtVrV~-v~I~EnKeRiQ~ 167 (201)
.|.+||+|+|. -++.+-+.+.|+
T Consensus 62 ~~~~G~vv~i~~g~v~~~~g~~qL 85 (119)
T 1o7i_A 62 SIKEGQVVKIENAWTTAFKGQVQL 85 (119)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCCEEEEEeEEEEEeCCEEEE
Confidence 38999999998 777664444444
No 90
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=20.63 E-value=72 Score=22.46 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEEEEEeec
Q 028968 142 PIPDIRTGDVVEIKLEVPE 160 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~E 160 (201)
++..|++||.|++.+...+
T Consensus 50 ~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 50 KMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EECCCCTTCEEEEEEEEET
T ss_pred hhhcCCCCCEEEEEEEEeC
Confidence 4788999999999986544
No 91
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A {Campylobacter jejuni}
Probab=20.20 E-value=1.4e+02 Score=20.90 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=21.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIa 174 (201)
..+.||+|.+..++..-..+.-.+++-+..
T Consensus 62 pv~~gd~l~v~~~v~~~g~~s~~~~~~i~~ 91 (137)
T 3d6l_A 62 PVFIGDIISCYSKVVNVGNTSISVEVEVTA 91 (137)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred CccCCCEEEEEEEEEEeCCcEEEEEEEEEE
Confidence 467899999999998844455555555544
No 92
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=20.12 E-value=1.3e+02 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=26.1
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCcc--ceEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIH--TTIRIR 187 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~--sTFTVR 187 (201)
.|.+|+.|.|.+ +.+ .+|+|+|-.....|-. .+++|+
T Consensus 47 ~~~~G~~l~v~i----G~~--~v~~G~Vd~v~~~~~~~~~~i~i~ 85 (379)
T 1wru_A 47 GLAPGKKFTLEI----GGQ--IVCTGYIDSRRRQMTADSMKITVA 85 (379)
T ss_dssp GGCTTCEEEEEE----TTE--EEEEEEEEEEEEEECSSCEEEEEE
T ss_pred ccCCCCEEEEEE----CCe--eEEEEEEEEEEeeEcCCceEEEEE
Confidence 467899999987 222 6899999888765432 355563
Done!