Query 028968
Match_columns 201
No_of_seqs 139 out of 900
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 08:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028968.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028968hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrm1 b.34.5.6 (M:2-109) Rib 100.0 3.1E-29 2.3E-33 193.6 6.1 69 132-201 13-82 (108)
2 d2j01t1 b.34.5.6 (T:1-138) Rib 99.9 3.6E-28 2.6E-32 194.5 4.6 70 132-201 8-78 (138)
3 d2gycn1 b.34.5.6 (N:1-114) Rib 99.9 8.8E-30 6.4E-34 198.3 -7.4 69 133-201 6-75 (114)
4 d2d6fa1 b.38.3.1 (A:2-73) Glut 75.6 1.7 0.00012 29.9 4.3 44 145-196 14-59 (72)
5 d1v29b_ b.34.4.4 (B:) Cobalt-c 70.4 1 7.5E-05 36.4 2.4 37 142-178 138-178 (229)
6 d1ugpb_ b.34.4.4 (B:) Cobalt-c 69.9 1.1 7.9E-05 36.2 2.5 37 142-178 135-175 (226)
7 d1nz9a_ b.34.5.4 (A:) N-utiliz 69.7 4.1 0.0003 26.0 4.9 28 145-178 4-31 (58)
8 d1zq1a1 b.38.3.1 (A:2-75) Glut 68.8 3.2 0.00023 28.4 4.4 47 145-195 10-58 (74)
9 d1nppa2 b.34.5.4 (A:191-248) N 59.8 4.4 0.00032 25.8 3.5 28 144-177 3-30 (58)
10 d1u1za_ d.38.1.6 (A:) (3R)-hyd 57.4 4.4 0.00032 28.9 3.6 28 145-172 100-127 (145)
11 d1jb7a1 b.40.4.3 (A:36-204) Te 56.2 3 0.00022 31.8 2.6 45 140-190 72-117 (169)
12 d2f41a1 d.38.1.5 (A:73-183) Tr 54.3 11 0.00077 25.7 5.1 35 144-178 66-100 (111)
13 d1vqok1 b.39.1.1 (K:1-132) Rib 52.7 9.2 0.00067 28.4 4.8 37 141-177 42-78 (132)
14 d1hh2p1 b.40.4.5 (P:127-198) S 48.9 6 0.00044 26.2 2.9 26 142-167 40-68 (72)
15 d2qdyb1 b.34.4.4 (B:1-211) Iro 48.5 3.8 0.00028 32.5 2.1 37 142-178 119-160 (211)
16 d1z6ba1 d.38.1.6 (A:84-229) (3 46.6 12 0.00089 26.5 4.5 27 145-171 99-127 (146)
17 d1ib8a1 b.38.2.1 (A:91-164) Hy 43.4 30 0.0022 22.0 5.8 47 148-200 13-59 (74)
18 d2c2ia1 d.38.1.4 (A:2-150) Hyp 41.9 16 0.0012 25.5 4.6 17 144-160 97-113 (149)
19 d2ba0a1 b.40.4.5 (A:53-135) S1 41.7 10 0.00074 24.5 3.1 31 145-181 50-80 (83)
20 d2bi0a2 d.38.1.4 (A:186-337) H 41.1 18 0.0013 26.4 4.7 32 144-175 96-131 (152)
21 d2bi0a1 d.38.1.4 (A:8-185) Hyp 40.7 9.7 0.00071 28.1 3.2 17 144-160 94-110 (178)
22 d1kl9a2 b.40.4.5 (A:3-88) Euka 40.7 9.6 0.0007 24.9 2.9 22 145-166 59-81 (86)
23 d1iq6a_ d.38.1.4 (A:) (R)-spec 39.7 14 0.001 25.2 3.8 16 145-160 85-100 (132)
24 d1wi5a_ b.40.4.5 (A:) S1-domai 38.0 12 0.00085 26.2 3.2 24 143-166 65-89 (119)
25 d2hqxa1 b.34.9.1 (A:8-97) P100 37.6 49 0.0036 21.6 7.8 64 121-194 2-65 (90)
26 d2cwza1 d.38.1.7 (A:1-138) Hyp 37.6 23 0.0017 25.3 4.8 34 144-177 72-105 (138)
27 d1yvca1 b.40.4.12 (A:1-69) Hyp 36.0 20 0.0014 23.1 3.9 46 141-187 9-55 (69)
28 d1gvha2 b.43.4.2 (A:147-253) F 35.6 16 0.0012 24.0 3.5 50 141-193 32-82 (107)
29 d1wrua2 b.106.1.1 (A:3-176) Ba 35.4 29 0.0021 24.3 5.0 28 143-176 43-70 (174)
30 d2vv5a1 b.38.1.3 (A:113-179) M 35.0 11 0.00078 24.0 2.3 21 145-176 17-37 (67)
31 d2asba1 b.40.4.5 (A:108-183) S 33.9 18 0.0013 24.0 3.4 26 142-167 44-72 (76)
32 d2c35b1 b.40.4.5 (B:78-171) C- 33.8 13 0.00097 24.6 2.8 23 145-167 59-82 (94)
33 d1sroa_ b.40.4.5 (A:) S1 RNA-b 33.4 16 0.0011 23.4 3.0 20 146-165 50-69 (76)
34 d2j01o1 b.39.1.1 (O:1-122) Rib 32.6 27 0.0019 25.2 4.5 33 145-177 32-67 (122)
35 d2eifa1 b.34.5.2 (A:1-73) Euka 32.0 40 0.0029 21.9 5.0 51 143-200 12-64 (73)
36 d3bzka4 b.40.4.5 (A:637-730) T 31.2 17 0.0013 24.1 3.0 21 146-166 63-84 (94)
37 d1q6wa_ d.38.1.4 (A:) Monoamin 30.6 30 0.0022 23.7 4.4 16 145-160 98-113 (151)
38 d1qzga_ b.40.4.3 (A:) Protecti 30.2 11 0.00078 29.0 2.0 34 140-179 88-122 (170)
39 d2ahob2 b.40.4.5 (B:1-84) Euka 29.7 15 0.0011 23.7 2.3 21 146-166 58-79 (84)
40 d2hlja1 d.38.1.1 (A:1-156) Hyp 29.6 31 0.0022 23.9 4.3 28 144-171 67-95 (156)
41 d1xjva1 b.40.4.3 (A:6-145) Pro 29.2 9.8 0.00071 27.9 1.5 33 141-179 62-95 (140)
42 d2o5ua1 d.38.1.1 (A:5-143) Hyp 29.0 31 0.0022 22.8 4.0 29 144-172 70-99 (139)
43 d1lo7a_ d.38.1.1 (A:) 4-hydrox 28.5 36 0.0026 22.4 4.4 29 144-172 69-98 (140)
44 d2cyea1 d.38.1.1 (A:1-132) Pro 28.5 31 0.0023 23.1 4.1 27 143-169 63-90 (132)
45 d2z1ca1 b.40.14.1 (A:2-72) Hyd 28.2 15 0.0011 24.4 2.1 14 143-156 32-45 (71)
46 d2ix0a3 b.40.4.5 (A:558-644) E 28.1 15 0.0011 24.7 2.2 21 145-165 60-81 (87)
47 d2do3a1 b.34.5.5 (A:462-523) T 27.5 27 0.0019 22.9 3.3 28 145-178 10-37 (62)
48 d2pu9b1 b.34.4.3 (B:1-73) Ferr 27.5 18 0.0013 24.6 2.6 31 146-176 1-39 (73)
49 d2owna2 d.38.1.8 (A:150-258) P 26.3 40 0.0029 21.9 4.2 26 144-169 61-88 (109)
50 d2q78a1 d.38.1.7 (A:1-130) Unc 26.2 40 0.0029 24.3 4.5 34 143-179 73-107 (130)
51 d2oiwa1 d.38.1.1 (A:1-131) GK1 26.2 62 0.0045 21.0 5.3 28 144-171 61-89 (131)
52 d2je6i1 b.40.4.5 (I:66-152) S1 26.0 38 0.0027 21.8 4.0 32 144-181 53-84 (87)
53 d1f39a_ b.87.1.1 (A:) lambda r 25.4 30 0.0022 23.1 3.4 38 144-191 23-61 (101)
54 d2alia1 d.38.1.1 (A:5-134) Hyp 24.5 79 0.0057 20.8 5.6 28 144-171 63-91 (130)
55 d1jb7a2 b.40.4.3 (A:205-328) T 23.4 23 0.0016 26.2 2.6 22 139-160 54-76 (124)
56 d2z0sa1 b.40.4.5 (A:60-147) S1 23.3 35 0.0025 22.0 3.4 32 144-181 54-85 (88)
57 d2diqa1 b.34.9.1 (A:8-104) Tud 23.2 86 0.0063 19.8 5.8 63 121-194 4-66 (97)
58 d1y14b1 b.40.4.5 (B:81-171) C- 23.2 25 0.0018 22.9 2.6 22 145-166 56-78 (91)
59 d1go3e1 b.40.4.5 (E:79-184) C- 22.9 24 0.0018 24.0 2.5 22 144-165 56-78 (106)
60 d1udxa3 d.242.1.1 (A:341-416) 22.5 37 0.0027 22.3 3.4 32 121-155 35-66 (76)
61 d2gyci1 b.39.1.1 (I:2-122) Rib 22.3 21 0.0016 25.7 2.2 32 145-176 31-65 (121)
62 d1iz6a1 b.34.5.2 (A:2-70) Euka 21.9 79 0.0058 20.0 4.9 19 182-200 42-60 (69)
63 d1hr0w_ b.40.4.5 (W:) Translat 21.9 14 0.001 24.5 1.0 21 145-165 46-67 (71)
64 d1whia_ b.39.1.1 (A:) Ribosoma 21.6 58 0.0043 23.3 4.6 31 146-176 33-66 (122)
65 d1cqxa2 b.43.4.2 (A:151-261) F 21.1 71 0.0052 20.8 4.7 46 141-189 30-76 (111)
66 d2nuja1 d.38.1.1 (A:3-161) Hyp 20.5 60 0.0044 22.2 4.4 25 145-169 85-110 (159)
67 d2fuja1 d.38.1.1 (A:5-122) Hyp 20.4 55 0.004 21.4 4.0 24 144-167 63-87 (118)
68 d3cdda2 b.106.1.1 (A:2-180) Ba 20.2 1E+02 0.0076 21.2 5.8 42 141-188 49-92 (179)
69 d1s9ca2 d.38.1.4 (A:10-163) 2- 20.2 1E+02 0.0075 21.2 5.7 16 145-160 90-105 (154)
No 1
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.95 E-value=3.1e-29 Score=193.63 Aligned_cols=69 Identities=36% Similarity=0.707 Sum_probs=64.7
Q ss_pred HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
+.+|+.+++ ++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 13 ~~ie~~~~k-~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl 82 (108)
T d2zjrm1 13 RGIEQDHTR-QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 82 (108)
T ss_dssp HHTTGGGCC-CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHhCc-CCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEc
Confidence 446677665 8999999999999999999 99999999999999999999999999999999999999997
No 2
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}
Probab=99.94 E-value=3.6e-28 Score=194.49 Aligned_cols=70 Identities=37% Similarity=0.718 Sum_probs=67.6
Q ss_pred HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
+.+|+.++++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 8 ~~iE~~~~k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl 78 (138)
T d2j01t1 8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 78 (138)
T ss_dssp HHHHCCCCCSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECS
T ss_pred HHHHHHhhcccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEec
Confidence 56788889999999999999999999999 99999999999999999999999999999999999999997
No 3
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=8.8e-30 Score=198.30 Aligned_cols=69 Identities=36% Similarity=0.706 Sum_probs=66.4
Q ss_pred HHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968 133 AVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (201)
Q Consensus 133 ~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL 201 (201)
.+|+.|+++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++|||||||++|+||||+|||
T Consensus 6 ~ie~~q~k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl 75 (114)
T d2gycn1 6 QLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT 75 (114)
T ss_dssp SSSSSTTCCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCC
T ss_pred HHHHHHhhccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEe
Confidence 4577788999999999999999999999 99999999999999999999999999999999999999997
No 4
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=75.56 E-value=1.7 Score=29.89 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=29.5
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeee--CCeeeE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII--AGIGVE 196 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs--~GVGVE 196 (201)
.+.+||.|+|.. .-..|+|+++-+--.+-..+++| |+- +++|+.
T Consensus 14 ~i~vGD~V~i~~-------~~~~~eGilmP~~e~sd~~~iVl-KL~nGYNiGi~ 59 (72)
T d2d6fa1 14 SIDVGDMVLVEK-------PDVTYEGMVLDRADDADDRHIVL-KLENGYNIGVE 59 (72)
T ss_dssp TCCTTCEEEEEC-------SSCEEEEEECCCCTTSCSSEEEE-ECTTSCEEEEE
T ss_pred CCCCCCEEEEEE-------CCcEEEEEEcCCcccCCCCEEEE-EecCceeEeee
Confidence 368999999962 22789999998765444444544 554 456654
No 5
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=70.42 E-value=1 Score=36.37 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=29.8
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEeecC
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQNA 178 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn~ 178 (201)
.-|.|++||.|+|.-.-+-.-.|+..| .|+|++.+|.
T Consensus 138 ~~p~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~i~~~~g~ 178 (229)
T d1v29b_ 138 SFPRFEVGERIKTRNIHPTGHTRFPRYVRDKYGVIEEVYGA 178 (229)
T ss_dssp CCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEE
T ss_pred CCCcCCCCCEEEEeeCCCCCccccchhhcCCeeEEEEEecC
Confidence 358899999999986555577888887 7999998864
No 6
>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=69.90 E-value=1.1 Score=36.23 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=29.7
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEEeecC
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQNA 178 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIarrn~ 178 (201)
.-|.|.+||.|+|.-..+-.-.|+..| .|+|++.+|.
T Consensus 135 ~~p~F~vGd~Vrv~~~~~~gHtR~P~Y~rg~~G~I~~~~g~ 175 (226)
T d1ugpb_ 135 RPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHGA 175 (226)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCCCceeCchhhcCCeeEEEEEecC
Confidence 358899999999986555577888887 7999988753
No 7
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=69.66 E-value=4.1 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecC
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~ 178 (201)
+|++||+|+|. ..=.+-|+|.|......
T Consensus 4 ~F~~Gd~V~I~------~GpF~g~~g~V~~i~~~ 31 (58)
T d1nz9a_ 4 AFREGDQVRVV------SGPFADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEEC------SGGGTTCEEEEEEEETT
T ss_pred cccCCCEEEEe------ccCCCCCEEEEEEEcCC
Confidence 69999999994 46778889988877543
No 8
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=68.76 E-value=3.2 Score=28.41 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeee--CCeee
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII--AGIGV 195 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs--~GVGV 195 (201)
.+.+||.|+|... +..=-..|+|+++-+-..+-...++| |.. |++|+
T Consensus 10 ~~~~GD~Vri~~~---~~~~~~~~eGilmP~~e~s~~~~ivl-KL~nGYNiGi 58 (74)
T d1zq1a1 10 NINVGDFVRITKE---EDGEEVTYEGYIMPPYELSAGDTLVL-KLENGYNIGI 58 (74)
T ss_dssp TCCTTCEEEEEEE---SSSSEEECCEEECCCCTTCCCSEEEE-EETTSCEEEE
T ss_pred CCCCCCEEEEEEe---cCCCceEEEEEEcCCcccCCCCEEEE-EecCceeecc
Confidence 3789999999753 11123479999998754333344444 544 44554
No 9
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=59.79 E-value=4.4 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
.+|.+||+|+|. ..=..-|+|.|.....
T Consensus 3 vdf~~Gd~V~I~------~GpF~g~~g~V~~i~~ 30 (58)
T d1nppa2 3 VEFEKGDQVRVI------EGPFMNFTGTVEEVHP 30 (58)
T ss_dssp CSCCTTCEEEEC------SSTTTTCEEEEEEEEG
T ss_pred ccccCCCEEEEc------ccCCCCCEEEEEEEcC
Confidence 379999999984 4567778888877654
No 10
>d1u1za_ d.38.1.6 (A:) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=57.42 E-value=4.4 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIV 172 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIV 172 (201)
.+.|||++++.+++...+..+-.|+|.+
T Consensus 100 ~v~PGd~L~i~v~~~~~~~~~~~~~~~~ 127 (145)
T d1u1za_ 100 PVLPGDQLQLHAKFISVKRSIWKFDCHA 127 (145)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 4679999999999987666666666655
No 11
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=56.16 E-value=3 Score=31.77 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.8
Q ss_pred CCCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeee
Q 028968 140 ERPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190 (201)
Q Consensus 140 kkdiPeF-r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs 190 (201)
..+||.+ ++||+|.+|= =++|.|.|=.....+.+-.++|-|=+-.
T Consensus 72 ~~~LP~V~~~GDII~l~r------v~i~~~~g~~~~v~~~~~~SswavF~~~ 117 (169)
T d1jb7a1 72 FEDLPIIHRAGDIIRVHR------ATLRLYNGQRQFNANVFYSSSWALFSTD 117 (169)
T ss_dssp GGGSCCCCEETCEEEEEE------EEEEEETTEEEEEEETTTTCEEEEECSS
T ss_pred HHHCCCCCCCCCEEEEEE------EEEEEECCceeEEEccccceeEEEEeCC
Confidence 3579997 5899999982 3578888888888888888888876543
No 12
>d2f41a1 d.38.1.5 (A:73-183) Transcription factor FapR, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=54.30 E-value=11 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeecC
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~ 178 (201)
-..++||++..+.++....+|...++.-|....+.
T Consensus 66 ~pv~~Gd~l~a~a~v~~~~~~~~~~~v~v~~~~~~ 100 (111)
T d2f41a1 66 RQVKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGE 100 (111)
T ss_dssp SCCBTTCEEEEEEEEEEECSSSSCEEEEEEEEETT
T ss_pred EccccCceEEEEEEEEEECCcEEEEEEEEEEEECC
Confidence 45789999999999988777888888888776653
No 13
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=52.73 E-value=9.2 Score=28.35 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 141 RPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
+..|.-.+||+|.|.++-.-.+.|-|+|.++|+..+.
T Consensus 42 ~r~~~a~vGD~IvvsVk~~~~~~k~~v~~AvIVrtkk 78 (132)
T d1vqok1 42 NRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRK 78 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred ccccccccceEEEEEEeecCCCcccceEEEEEEEecC
Confidence 4577789999999998766556788999999998664
No 14
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=48.93 E-value=6 Score=26.17 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred CCC--CCCCCCEEEEEEEeec-CCcccce
Q 028968 142 PIP--DIRTGDVVEIKLEVPE-NRRRLSI 167 (201)
Q Consensus 142 diP--eFr~GDtVrV~v~I~E-nKeRiQ~ 167 (201)
.+| .|++||.|++.+.-.+ +....|+
T Consensus 40 qip~E~~~~Gdrik~~i~~V~~~~kgpqI 68 (72)
T d1hh2p1 40 WIPGEEIKAGDLVKVYIIDVVKTTKGPKI 68 (72)
T ss_dssp SCTTCCCCTTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCCCCCCCEEEEEEEEEEEcCCCCeE
Confidence 355 5999999999988766 4444443
No 15
>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=48.53 E-value=3.8 Score=32.46 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.6
Q ss_pred CCCCCCCCCEEEEEEEeecCCcccceE----EEEEEE-eecC
Q 028968 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMS-RQNA 178 (201)
Q Consensus 142 diPeFr~GDtVrV~v~I~EnKeRiQ~F----eGIVIa-rrn~ 178 (201)
+-|.|++||.|+|.-..+-.-.|+..| .|+|+. ..|.
T Consensus 119 ~~p~F~vGd~Vrv~~~~~~gHtRlP~Y~rgk~G~I~~~~~g~ 160 (211)
T d2qdyb1 119 ETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEK 160 (211)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSC
T ss_pred CCCcCCCCCEEEEccCCCCCccccchhhcCCeEEEEeeccCC
Confidence 458899999999986555477888777 788873 4543
No 16
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=46.59 E-value=12 Score=26.54 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=17.9
Q ss_pred CCCCCCEEEEEEEeecCCcc--cceEEEE
Q 028968 145 DIRTGDVVEIKLEVPENRRR--LSIYKGI 171 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeR--iQ~FeGI 171 (201)
.++|||++++.+++..-+++ +-.|+|.
T Consensus 99 ~v~PGd~l~i~~~i~~~~~~~~i~~~~~~ 127 (146)
T d1z6ba1 99 PVLPGDTLTMQANLISFKSSLGIAKLSGV 127 (146)
T ss_dssp CCCTTCEEEEEEEEEEEETTTTEEEEEEE
T ss_pred eEecCCEEEEEEEEEEEecCccEEEEEEE
Confidence 45789999999998763333 3335554
No 17
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=43.39 E-value=30 Score=22.04 Aligned_cols=47 Identities=9% Similarity=0.315 Sum_probs=30.9
Q ss_pred CCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEee
Q 028968 148 TGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 148 ~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FP 200 (201)
.|-.|+|.++-+-+.+| .|+|+.+...+ .++||.---.+.+.+-.||
T Consensus 13 ~G~~v~v~l~~p~~g~k--~f~G~L~~~~~----~~i~l~~~~~~~~~~~~i~ 59 (74)
T d1ib8a1 13 VGKYIHVGLYQAIDKQK--VFEGTLLAFEE----DELTMEYMDKTRKKTVQIP 59 (74)
T ss_dssp CSEEEEEECSSCSSSCS--EEEEEEEEEET----TEEEEEEECSSCEEEEEEC
T ss_pred CCCEEEEEEecccCCce--EEEEEEEeecC----CeEEEEEecCcccEEEEEc
Confidence 68888888876654443 69999999886 4566654333444444555
No 18
>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=41.86 E-value=16 Score=25.54 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=14.9
Q ss_pred CCCCCCCEEEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPE 160 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E 160 (201)
-.+.+||||++..+|.+
T Consensus 97 ~PV~~GDti~~~~~V~~ 113 (149)
T d2c2ia1 97 APVPVGSRVRATSSLVG 113 (149)
T ss_dssp SCCBTTCEEEEEEEEEE
T ss_pred ccEeeCceEEEEEEEEE
Confidence 35789999999999987
No 19
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=41.68 E-value=10 Score=24.49 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=20.7
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCcc
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIH 181 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~ 181 (201)
.|++||+|++.+.-.....| +.+..|..|++
T Consensus 50 ~~~vGd~V~~kV~~vd~~~~------i~LS~k~~~~~ 80 (83)
T d2ba0a1 50 VLDIGDAIIAKVLNIDPKMK------VTLTMKDRICR 80 (83)
T ss_dssp TCCTTCEEEEEEEEECTTCC------EEEECCSSSCE
T ss_pred hcccccEEEEEEEEECCCCC------EEEEecCCCCC
Confidence 49999999999876542223 44566666653
No 20
>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=41.07 E-value=18 Score=26.37 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCCCCCCEEEEEEEeecC----CcccceEEEEEEEe
Q 028968 144 PDIRTGDVVEIKLEVPEN----RRRLSIYKGIVMSR 175 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~En----KeRiQ~FeGIVIar 175 (201)
-.+++||||.+.++|.+. ...+-.++++|...
T Consensus 96 ~PV~~GDti~~~~eV~~~~~~~~~g~v~~r~~v~~~ 131 (152)
T d2bi0a2 96 APVHEGDTLYSELHIESAQAHADGGVLGLRSLVYAV 131 (152)
T ss_dssp SCCCTTCEEEEEEEEEEEEECSSSEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEEEEEEEeEcCCCCEEEEEEEEEEc
Confidence 458999999999999772 22333455655544
No 21
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=40.74 E-value=9.7 Score=28.06 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=15.0
Q ss_pred CCCCCCCEEEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPE 160 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E 160 (201)
-.+++||||.+.++|.+
T Consensus 94 ~PV~~GDTl~~~~eV~~ 110 (178)
T d2bi0a1 94 RFPAVGDTLYTRTEVVG 110 (178)
T ss_dssp SCCBTTCEEEEEEEEEE
T ss_pred eeccCCCEEEEEEEEEE
Confidence 35889999999999987
No 22
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.66 E-value=9.6 Score=24.92 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=15.8
Q ss_pred CCCCCCEEEEEEEeec-CCcccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ 166 (201)
.|++||.|++.+.-.+ .+.|++
T Consensus 59 ~~~~Gd~v~~kV~~vd~~~~ki~ 81 (86)
T d1kl9a2 59 LIRIGRNECVVVIRVDKEKGYID 81 (86)
T ss_dssp --CTTCEEEEEEEEEETTTTEEE
T ss_pred EeecccEEEEEEEEEECCCCEEE
Confidence 3899999999987665 566664
No 23
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=39.72 E-value=14 Score=25.17 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.4
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
.+++||+|.+..+|.+
T Consensus 85 Pv~~GDtl~~~~~v~~ 100 (132)
T d1iq6a_ 85 PVFVGDEVTAEVEVTA 100 (132)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred cCCCcCEEEEEEEEEE
Confidence 4789999999999987
No 24
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.96 E-value=12 Score=26.18 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=18.0
Q ss_pred CCCCCCCCEEEEEEEeec-CCcccc
Q 028968 143 IPDIRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~E-nKeRiQ 166 (201)
.-.|++||+|++.+.-.+ +++|+.
T Consensus 65 ~~~~~vGq~v~~~V~~vd~~~~~i~ 89 (119)
T d1wi5a_ 65 GAKLKVGQYLNCIVEKVKGNGGVVS 89 (119)
T ss_dssp SCCCCTTCEEEEEEEECCTTSCEEE
T ss_pred HHhcccceEEEEEEEEEeCCCCEEE
Confidence 346999999999987666 555554
No 25
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.64 E-value=49 Score=21.59 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCee
Q 028968 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 194 (201)
Q Consensus 121 klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVG 194 (201)
++..||+.|+.. .+...........++||.+-+.+. ++ +-|.|.|+...+. .++.|+-|-+|--
T Consensus 2 qle~Lm~~l~~~-~~~~~~~~~~~~p~~G~~c~a~~~--D~----~wyRa~V~~~~~~---~~~~V~~vDyG~~ 65 (90)
T d2hqxa1 2 QFQKLMENMRND-IASHPPVEGSYAPRRGEFCIAKFV--DG----EWYRARVEKVESP---AKIHVFYIDYGNR 65 (90)
T ss_dssp HHHHHHHHHHHH-HHHSCCCTTTCCCCTTCEEEEECT--TS----CEEEEEEEEEEET---TEEEEEETTTCCE
T ss_pred hHHHHHHHHHHH-HhcCCCCCCccCCCCCCEEEEEEc--CC----CEEEEEEEEeCCC---CeEEEEEEeCCCC
Confidence 456777776433 222111111222378999988652 23 3899999998653 3689988877754
No 26
>d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus thermophilus [TaxId: 274]}
Probab=37.57 E-value=23 Score=25.26 Aligned_cols=34 Identities=6% Similarity=-0.062 Sum_probs=26.2
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeec
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn 177 (201)
-...+||+|.+..++.+-..|...|+..|..-.|
T Consensus 72 ~Pv~iG~~V~~~a~v~~v~~~~~~~~v~~~d~~g 105 (138)
T d2cwza1 72 ASALPGMRVRVVARHEKTEGNRVYARVEAYNELG 105 (138)
T ss_dssp SCCCTTCEEEEEEEEEEEETTEEEEEEEEEETTC
T ss_pred cccCCCcEEEEEEEEEEeCCCEEEEEEEEEECCC
Confidence 3568999999999999944567888888765433
No 27
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=36.02 E-value=20 Score=23.11 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEE
Q 028968 141 RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIR 187 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVR 187 (201)
+++| ++.||++.|++.-.. +-.=+-.++|.++-..|.--+....+|
T Consensus 9 ~~~p-vk~g~~~~v~I~~l~~~G~Giar~~g~vvfV~~alPGe~V~v~ 55 (69)
T d1yvca1 9 KNVP-VEAGKEYEVTIEDMGKGGDGIARIDGFVVFVPNAEKGSVINVK 55 (69)
T ss_dssp SCCS-SCTTCEEEEECCEECTTSCEEEEETTEEEEETTCCTTCEEEEE
T ss_pred ccCC-CCCCCEEEEEEEECCCCCcEEEEECCEEEEeCCCCCCCEEEEE
Confidence 4555 899999999876655 444566667777777776556655543
No 28
>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}
Probab=35.58 E-value=16 Score=24.03 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCe
Q 028968 141 RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGI 193 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GV 193 (201)
..+|.|++|.-|.|.+.+.. ...+...| .|+-....-.-.|+|+++-+|.
T Consensus 32 ~~~~~~~pGQ~v~l~~~~~~~~~~~~r~~---s~ss~~~~~~~~i~vk~~~~G~ 82 (107)
T d1gvha2 32 GAVAEYRPGQYLGVWLKPEGFPHQEIRQY---SLTRKPDGKGYRIAVKREEGGQ 82 (107)
T ss_dssp CCCCCCCTTCEEEEEECCTTCSSCEEEEE---ECCSCCCSSCEEEEEECCTTCH
T ss_pred CcccCCCCCCEEEEEeeccccCceEEeec---cccCCCCCCceEEEEEEcCCcc
Confidence 46899999999999987765 33333344 2322212223467888776664
No 29
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu [TaxId: 10677]}
Probab=35.44 E-value=29 Score=24.26 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=20.9
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEee
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ 176 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarr 176 (201)
...+.+|+.|.|.+ +-+ ..|.|+|....
T Consensus 43 ~~~~~~G~~v~v~i----g~~--~~~~G~v~~~~ 70 (174)
T d1wrua2 43 LSGLAPGKKFTLEI----GGQ--IVCTGYIDSRR 70 (174)
T ss_dssp CGGGCTTCEEEEEE----TTE--EEEEEEEEEEE
T ss_pred cccccCCCEEEEEE----ccc--cEEEEEEEEEE
Confidence 34578999999976 333 47999998765
No 30
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=35.03 E-value=11 Score=24.04 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=15.9
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEee
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ 176 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarr 176 (201)
.|++||.|++. -+.|.|..+.
T Consensus 17 pf~vGD~I~i~-----------~~~G~V~~I~ 37 (67)
T d2vv5a1 17 PFRAGEYVDLG-----------GVAGTVLSVQ 37 (67)
T ss_dssp SSCTTCEEESS-----------SCEEEEEEEC
T ss_pred CccCCCEEEEC-----------CEEEEEEEEe
Confidence 39999999873 3678887764
No 31
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.94 E-value=18 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=19.0
Q ss_pred CCC--CCCCCCEEEEEEEeec-CCcccce
Q 028968 142 PIP--DIRTGDVVEIKLEVPE-NRRRLSI 167 (201)
Q Consensus 142 diP--eFr~GDtVrV~v~I~E-nKeRiQ~ 167 (201)
.+| .|++||.|++.+.-.+ +.+-.|+
T Consensus 44 qip~E~y~~Gdrik~~i~~V~~~~kGp~I 72 (76)
T d2asba1 44 QVPGESYEHGNRLRCYVVGVTRGAREPLI 72 (76)
T ss_dssp SCTTCCCCTTCEEEEEEEEEECCSSSCEE
T ss_pred cCCCcccCCCCEEEEEEEEEEecCCCCEE
Confidence 456 5999999999988776 4444443
No 32
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.80 E-value=13 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=18.1
Q ss_pred CCCCCCEEEEEEEeec-CCcccce
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLSI 167 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ~ 167 (201)
.|+.||.|+|++.-.. +..|++.
T Consensus 59 ~~~~Gd~VrvkV~~v~~~~~~I~~ 82 (94)
T d2c35b1 59 VIQQDDEIRLKIVGTRVDKNDIFA 82 (94)
T ss_dssp EEETTCEEEEEEEEEEEETTEEEE
T ss_pred EEeCCCEEEEEEEEEecCcCcceE
Confidence 4899999999988766 6777754
No 33
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=33.45 E-value=16 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=14.2
Q ss_pred CCCCCEEEEEEEeecCCccc
Q 028968 146 IRTGDVVEIKLEVPENRRRL 165 (201)
Q Consensus 146 Fr~GDtVrV~v~I~EnKeRi 165 (201)
|++||.|+|.+.-...+.|+
T Consensus 50 ~~~G~~v~v~Vi~id~~~ri 69 (76)
T d1sroa_ 50 LQMGQEVPVKVLEVDRQGRI 69 (76)
T ss_dssp CCTTCEEEEEEEECCTTCCC
T ss_pred cCCCCEEEEEEEEECCCCCE
Confidence 89999998887655433454
No 34
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=32.57 E-value=27 Score=25.21 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEEEeecCC---cccceEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPENR---RRLSIYKGIVMSRQN 177 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnK---eRiQ~FeGIVIarrn 177 (201)
.-.+||+|.|.++-...+ .+=|+|.++|+..+.
T Consensus 32 ~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk 67 (122)
T d2j01o1 32 YATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKK 67 (122)
T ss_dssp CCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSS
T ss_pred ccccCcEEEEEEeecccCCccccCcCcceeEEeeec
Confidence 357999999998765423 566799999998664
No 35
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.99 E-value=40 Score=21.91 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecC-C-ccceEEEEeeeCCeeeEEEee
Q 028968 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA-G-IHTTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~-G-i~sTFTVRKIs~GVGVER~FP 200 (201)
.-+++.|++|.+. .+.=...-+=..+-|+ | .-....++++..|--.|.+||
T Consensus 12 ~~~lKkG~~i~~~-------g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~ 64 (73)
T d2eifa1 12 VGSLKVGQYVMID-------GVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 64 (73)
T ss_dssp GGGCCTTSEEEET-------TEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEE
T ss_pred HHHccCCCEEEEC-------CEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEc
Confidence 3478999988873 1111111111233333 3 235567999999999999997
No 36
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.16 E-value=17 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=16.0
Q ss_pred CCCCCEEEEEEEeec-CCcccc
Q 028968 146 IRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 146 Fr~GDtVrV~v~I~E-nKeRiQ 166 (201)
|++||.|++.+.-.. ++.|+.
T Consensus 63 ~~vGq~v~~~V~~id~~~~~i~ 84 (94)
T d3bzka4 63 VKAGDIVKVKVMEVDIPRNRVG 84 (94)
T ss_dssp CCTTCEEEEEEEEEETTTTEEE
T ss_pred hccCcEEEEEEEEEECCCCEEE
Confidence 899999999876655 566553
No 37
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.60 E-value=30 Score=23.72 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
.+++||+|+++.+|.+
T Consensus 98 Pv~~GDtl~~~~~V~~ 113 (151)
T d1q6wa_ 98 PVFIGDTIAASAEVVE 113 (151)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEE
Confidence 4789999999999876
No 38
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=30.23 E-value=11 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=22.7
Q ss_pred CCCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEeecCC
Q 028968 140 ERPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179 (201)
Q Consensus 140 kkdiPeF-r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G 179 (201)
..++|.+ ++||+|.+|= =++|.|.|=..+..+.|
T Consensus 88 ~e~LP~V~~vGDII~l~r------vkvq~~~g~~q~v~~~~ 122 (170)
T d1qzga_ 88 GNDLPVIKQVGQPLLLHQ------ITLRSYRDRTQGLSKDQ 122 (170)
T ss_dssp SSCSCCCCSTTCEEEEEE------EEEEEETTEEEEEEEEE
T ss_pred hHHCCCcCCCCCEEEEEE------EEEEEECCceEEEecCc
Confidence 4679997 6899999972 24556666555554443
No 39
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=29.73 E-value=15 Score=23.71 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=15.7
Q ss_pred CCCCCEEEEEEEeec-CCcccc
Q 028968 146 IRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 146 Fr~GDtVrV~v~I~E-nKeRiQ 166 (201)
|++||+|++.+.-.. .+.|+.
T Consensus 58 ~~~G~~v~~kV~~vd~~~~~i~ 79 (84)
T d2ahob2 58 LKENRKVIVKVIRVDRRKGTVD 79 (84)
T ss_dssp TCSSCEEECEEEEEETTTTEEE
T ss_pred eecccEEEEEEEEEECCCCEEE
Confidence 899999999887654 555543
No 40
>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas putida [TaxId: 303]}
Probab=29.63 E-value=31 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.569 Sum_probs=22.2
Q ss_pred CCCCCCCEEEEEEEeec-CCcccceEEEE
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSIYKGI 171 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~FeGI 171 (201)
-+++.||.+.|+.++.+ ++.++..+.-+
T Consensus 67 ~~l~~gd~i~V~~~i~~~~~~~~~~~~~i 95 (156)
T d2hlja1 67 HEVKLGTEVWVQTQILGFDRKRLHVYHSL 95 (156)
T ss_dssp SCCBTTCEEEEEEEEEEECSSEEEEEEEE
T ss_pred cccccccceEEEEeecccCCceEEEEeee
Confidence 46899999999999998 77777665433
No 41
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.21 E-value=9.8 Score=27.92 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCCCCC-CCCCEEEEEEEeecCCcccceEEEEEEEeecCC
Q 028968 141 RPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179 (201)
Q Consensus 141 kdiPeF-r~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~G 179 (201)
.+||.+ ++||+|++|=- ++|.|.|=+.+..+.+
T Consensus 62 ~~LP~v~~~GDII~l~r~------~v~~~~~~~~~~~~~~ 95 (140)
T d1xjva1 62 EALPIIYKNGDIVRFHRL------KIQVYKKETQGITSSG 95 (140)
T ss_dssp GGSCCCCSTTCEEEEEEE------EEEEETTEEEEEEEEE
T ss_pred HHCCCCCCCCCEEEEEEE------EEEEECCeEEEEecCC
Confidence 479996 58999999832 4455555444444444
No 42
>d2o5ua1 d.38.1.1 (A:5-143) Hypothetical thioesterase PA5185 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.01 E-value=31 Score=22.80 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=22.9
Q ss_pred CCCCCCCEEEEEEEeec-CCcccceEEEEE
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSIYKGIV 172 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~FeGIV 172 (201)
-.+..||.|.|.+.+.. ++.++..-..++
T Consensus 70 ~p~~~~d~v~v~~~i~~~~~~s~~~~~~i~ 99 (139)
T d2o5ua1 70 APVAFPQRIEMGLRVARLGNSSVQYELALF 99 (139)
T ss_dssp SCCCTTSCEEEEEEEEEECSSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEeecCCCEEEEEEEEE
Confidence 35788999999999998 887777765544
No 43
>d1lo7a_ d.38.1.1 (A:) 4-hydroxybenzoyl-CoA thioesterase {Pseudomonas sp., CBS-3 [TaxId: 306]}
Probab=28.51 E-value=36 Score=22.43 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCCCCCCEEEEEEEeec-CCcccceEEEEE
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSIYKGIV 172 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~FeGIV 172 (201)
-+...||.|.|++.+.+ ++.++.....++
T Consensus 69 ~~~~~~d~l~v~~~v~~~g~~s~~~~~~i~ 98 (140)
T d1lo7a_ 69 CTASYDDVLTIETCIKEWRRKSFVQRHSVS 98 (140)
T ss_dssp SCCCTTCEEEEEEEEEEECSSEEEEEEEEE
T ss_pred cccCCCCEEEEEEEEEEcCCEEEEEEEEEE
Confidence 45788999999999999 877777655544
No 44
>d2cyea1 d.38.1.1 (A:1-132) Probable thioesterase TTHA1846 {Thermus thermophilus [TaxId: 274]}
Probab=28.47 E-value=31 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=21.3
Q ss_pred CCCCCCCCEEEEEEEeec-CCcccceEE
Q 028968 143 IPDIRTGDVVEIKLEVPE-NRRRLSIYK 169 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~E-nKeRiQ~Fe 169 (201)
+-+++.||.|.|++++.+ ++.++....
T Consensus 63 ~~~~~~gd~i~i~~~i~~~g~~s~~~~~ 90 (132)
T d2cyea1 63 LRPILLGDEVFVGVRTVGLGRSSLRMEH 90 (132)
T ss_dssp CSCCBTTCEEEEEEEEEEECSSEEEEEE
T ss_pred ccccccccceEEEEEEEECCCEEEEEEE
Confidence 346789999999999998 777766544
No 45
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=28.21 E-value=15 Score=24.41 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.5
Q ss_pred CCCCCCCCEEEEEE
Q 028968 143 IPDIRTGDVVEIKL 156 (201)
Q Consensus 143 iPeFr~GDtVrV~v 156 (201)
+|+.++||.|-||.
T Consensus 32 v~e~~vGDyVLVh~ 45 (71)
T d2z1ca1 32 MPDTKPGDWVIVHT 45 (71)
T ss_dssp STTCCTTCEEEEET
T ss_pred eCCCCCCCEEEEee
Confidence 58899999999985
No 46
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=28.13 E-value=15 Score=24.70 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=16.5
Q ss_pred CCCCCCEEEEEEEeec-CCccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRL 165 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRi 165 (201)
.|+.||.|+|.+.-.. .++|+
T Consensus 60 ~~~~Gd~V~V~v~~vd~~~r~I 81 (87)
T d2ix0a3 60 VYKVTDVIDVTIAEVRMETRSI 81 (87)
T ss_dssp EEETTCEEEEEEEEEETTTTEE
T ss_pred EEECCCEEEEEEEEEecccCeE
Confidence 4999999999987765 55554
No 47
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.50 E-value=27 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCCCCCEEEEEEEeecCCcccceEEEEEEEeecC
Q 028968 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~ 178 (201)
.|++||-|+|- ..|-+=-.|+|++..+.
T Consensus 10 ~F~~GDhVkVi------~G~~~g~tGlVV~v~~~ 37 (62)
T d2do3a1 10 YFKMGDHVKVI------AGRFEGDTGLIVRVEEN 37 (62)
T ss_dssp SCCTTCEEEES------SSTTTTCEEEEEEECSS
T ss_pred ccCCCCeEEEe------ccEEcCccEEEEEEeCC
Confidence 59999999884 24677778999998753
No 48
>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain {Synechocystis sp. [TaxId: 1143]}
Probab=27.47 E-value=18 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCCCCEEEEEEEeec---CCcccceE-----EEEEEEee
Q 028968 146 IRTGDVVEIKLEVPE---NRRRLSIY-----KGIVMSRQ 176 (201)
Q Consensus 146 Fr~GDtVrV~v~I~E---nKeRiQ~F-----eGIVIarr 176 (201)
+++||.|+|+..+.= -+-|-|.| +|.|...-
T Consensus 1 mkvGdrVrV~~sv~VyhhP~hr~~~~Dl~G~eGeV~~~v 39 (73)
T d2pu9b1 1 MNVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVL 39 (73)
T ss_dssp CCTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEEC
T ss_pred CCCCCEEEEeeeEEEEeCCccCCCCcccCCCEEEEeEEE
Confidence 479999999876643 35566665 89998875
No 49
>d2owna2 d.38.1.8 (A:150-258) Putative oleoyl-ACP thioesterase LP0708 {Lactobacillus plantarum [TaxId: 1590]}
Probab=26.28 E-value=40 Score=21.90 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=18.6
Q ss_pred CCCCCCCEEEEEEEeec-C-CcccceEE
Q 028968 144 PDIRTGDVVEIKLEVPE-N-RRRLSIYK 169 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-n-KeRiQ~Fe 169 (201)
-+.+.||+|.|+..+.+ + +.++..+.
T Consensus 61 ~~~~~gd~v~v~t~v~~~~~~s~~~~~~ 88 (109)
T d2owna2 61 NEVKYGQTVTAHANILPSEVADQVTTSH 88 (109)
T ss_dssp SCCCTTCEEEEEEEEECCSSTTEEEEEE
T ss_pred CccCCCCeEEEEEEEEEcCCceEEEEEE
Confidence 45788999999999988 3 33444443
No 50
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 {Thermotoga maritima [TaxId: 2336]}
Probab=26.25 E-value=40 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCC
Q 028968 143 IPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAG 179 (201)
Q Consensus 143 iPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~G 179 (201)
+-.-.+|+.|+++.++.+ +.+|+. |+. .+..+.+
T Consensus 73 la~t~vG~~V~v~a~v~~vdgrrl~-F~v--~a~d~~~ 107 (130)
T d2q78a1 73 VKAVPTGTRVAVGVRVVGVVGNRVK-FRG--IVMSGDE 107 (130)
T ss_dssp CSCCBSSEEEEEEEEEEEEETTEEE-EEE--EEEETTE
T ss_pred cCCcCCCCEEEEEEEEEEEeCCEEE-EEE--EEEECCc
Confidence 345678999999999999 677776 764 4444443
No 51
>d2oiwa1 d.38.1.1 (A:1-131) GK1870 orthologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.20 E-value=62 Score=21.02 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=22.4
Q ss_pred CCCCCCCEEEEEEEeec-CCcccceEEEE
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSIYKGI 171 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~FeGI 171 (201)
-+++.||.|.|.+++.. ++.++....-+
T Consensus 61 ~~~~~gd~i~i~~~~~~~~~~s~~~~~~i 89 (131)
T d2oiwa1 61 NQMYYGQDVTVYTGIERIGNTSLTIYEEI 89 (131)
T ss_dssp SCCCTTSCEEEEEEEEEECSSEEEEEEEE
T ss_pred ecccCCCcceeEEEEEecCCeEEEEEEEE
Confidence 46789999999999999 77777665554
No 52
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=26.00 E-value=38 Score=21.83 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=21.3
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCcc
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIH 181 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~ 181 (201)
..|++||.|.+.+.-.....| +.+..|..|++
T Consensus 53 ~~~~~Gd~v~~kV~~vd~~~~------i~LS~k~~~lg 84 (87)
T d2je6i1 53 RYLDVGDYVIARIENFDRSID------PVLSVKGKDLG 84 (87)
T ss_dssp SSCCTTCEEEEEEEEEETTEE------EEEECCSTTCE
T ss_pred hhhcccceEEEEEEEECCCCC------EEEEEecCCCc
Confidence 359999999999864432222 55677776654
No 53
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=25.44 E-value=30 Score=23.06 Aligned_cols=38 Identities=16% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEE-EEEEeecCCccceEEEEeeeC
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKG-IVMSRQNAGIHTTIRIRRIIA 191 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeG-IVIarrn~Gi~sTFTVRKIs~ 191 (201)
|.|..||+|-|.- .. +...| +|+++.+.+ .+|+|++..
T Consensus 23 p~i~~Gd~viVd~---~~----~~~~g~ivva~~~~~---~~~vKr~~~ 61 (101)
T d1f39a_ 23 PSFPDGMLILVDP---EQ----AVEPGDFCIARLGGD---EFTFKKLIR 61 (101)
T ss_dssp SCCCTTCEEEEET---TS----CCCTTCEEEEECTTS---CEEEEEEEE
T ss_pred CCcCCCCEEEEEe---cC----ccCCCCEEEEEECCC---eEEEEEEEE
Confidence 8899999999852 11 22233 567766543 357777643
No 54
>d2alia1 d.38.1.1 (A:5-134) Hypothetical protein PA2801 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.53 E-value=79 Score=20.84 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=21.1
Q ss_pred CCCCCCCEEEEEEEeec-CCcccceEEEE
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSIYKGI 171 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~FeGI 171 (201)
-+++.||.+.|.+.+.+ ++.++.....+
T Consensus 63 ~~~~~~d~~~v~~~v~~ig~~s~~~~~~i 91 (130)
T d2alia1 63 KPVVHPATVVVELYAGRLGTSSLVLEHRL 91 (130)
T ss_dssp SCCCSSCEEEEEEEEEEECSSEEEEEEEE
T ss_pred ccccCCCceEEEEEEEecCCcEEEEEEEE
Confidence 34678999999999988 77776665443
No 55
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=23.42 E-value=23 Score=26.23 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=18.1
Q ss_pred cCCCCCCCCCCCEEEEEEE-eec
Q 028968 139 SERPIPDIRTGDVVEIKLE-VPE 160 (201)
Q Consensus 139 ~kkdiPeFr~GDtVrV~v~-I~E 160 (201)
++..+|.++.||+|++..- +.|
T Consensus 54 ~k~KFPhl~~G~vvRIRSat~de 76 (124)
T d1jb7a2 54 LKLKFPHVRTGEVVRIRSATYDE 76 (124)
T ss_dssp ETTTCTTCCTTCEEEEEEEEECT
T ss_pred hhhcCCccccCceEEEEeeeccc
Confidence 5778999999999999854 455
No 56
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=23.31 E-value=35 Score=21.99 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.2
Q ss_pred CCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCcc
Q 028968 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIH 181 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~ 181 (201)
+.|++||.|.+.+.-.....|+. +..|..|++
T Consensus 54 ~~~~vGd~V~~kV~~vd~~~~i~------Ls~k~~~~g 85 (88)
T d2z0sa1 54 SLLKVGDYIKAKVVAFDKTRSPL------LTVQGEGLG 85 (88)
T ss_dssp TSSCTTCEEEEEEEEECTTSCEE------EECCSSSCE
T ss_pred hhcccCcEEEEEEEEECCCCCEE------EEEecCCCc
Confidence 45999999998877554223444 455555543
No 57
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.25 E-value=86 Score=19.84 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCee
Q 028968 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 194 (201)
Q Consensus 121 klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVG 194 (201)
++-.||+.|+ +.. +. .........+||.+-+.+ .++. +-|.|.|+...+. .++.|+-|-+|.-
T Consensus 4 ~l~~L~~~l~-~~y-~~-~~~~~~~~~~G~~~~a~~--~~d~---~wyRa~V~~~~~~---~~~~V~~vDyG~~ 66 (97)
T d2diqa1 4 QLDKLVNEMT-QHY-EN-SVPEDLTVHVGDIVAAPL--PTNG---SWYRARVLGTLEN---GNLDLYFVDFGDN 66 (97)
T ss_dssp HHHHHHHHHH-HHH-TT-SCCCCCCCCTTCEEEECC--TTTC---SCEEEEECCCCSS---SCEEEEETTTCCE
T ss_pred HHHHHHHHHH-HHH-cc-CCCCcCCCCCCCEEEEEE--CCCC---eEEEEEEEEECCC---CEEEEEEEeeCCE
Confidence 4666776664 222 22 223344688999988753 2222 5899999887543 3699999988854
No 58
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.17 E-value=25 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=17.5
Q ss_pred CCCCCCEEEEEEEeec-CCcccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLS 166 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ 166 (201)
.|+.||.|+|.+.-.. ++.|+.
T Consensus 56 ~~~~Gd~VrvkV~~v~~~~~~i~ 78 (91)
T d1y14b1 56 VITIKSRIRVKIEGCISQVSSIH 78 (91)
T ss_dssp EECTTCEEEEEEEEEEEETTEEE
T ss_pred EEeCCCEEEEEEEEEecccCccE
Confidence 4999999999988766 666663
No 59
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.89 E-value=24 Score=24.00 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCCCCCCEEEEEEEeec-CCccc
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRL 165 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRi 165 (201)
-.|++||.|+|.+.-.. +++|+
T Consensus 56 ~~~~~Gd~v~vkV~~vd~~~~~~ 78 (106)
T d1go3e1 56 KVLEIGDYVRARIVAISLKAERK 78 (106)
T ss_dssp CEECTTCEEEEEEEEEECCC---
T ss_pred cceeecceEEEEEEEEchhhccc
Confidence 35999999999988665 66665
No 60
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=22.46 E-value=37 Score=22.29 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEE
Q 028968 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIK 155 (201)
Q Consensus 121 klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~ 155 (201)
.+..++++|.+.-++++..+. -.+.||||++.
T Consensus 35 ~~~~f~~~l~~~Gv~~~L~~~---Gak~GD~V~Ig 66 (76)
T d1udxa3 35 AAGYLQEVFRRQGVEAALRAK---GVRAGDLVRIG 66 (76)
T ss_dssp GHHHHHHHHHHTTHHHHHHTT---TCCTTCEEEET
T ss_pred HHHHHHHHHHHCChHHHHHHc---CCCCCCEEEEC
Confidence 355666666655666654443 36899999985
No 61
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}
Probab=22.27 E-value=21 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCCCCEEEEEEEeecCC---cccceEEEEEEEee
Q 028968 145 DIRTGDVVEIKLEVPENR---RRLSIYKGIVMSRQ 176 (201)
Q Consensus 145 eFr~GDtVrV~v~I~EnK---eRiQ~FeGIVIarr 176 (201)
.-.+||+|.|.++-...+ .+=|+|.|+|+..+
T Consensus 31 ~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtk 65 (121)
T d2gyci1 31 YAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTK 65 (121)
T ss_dssp CCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECS
T ss_pred cCccCcEEEEEEEEccCCCccccccEEEEEEEEEe
Confidence 457999999887643333 35669999999855
No 62
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.93 E-value=79 Score=20.04 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.9
Q ss_pred ceEEEEeeeCCeeeEEEee
Q 028968 182 TTIRIRRIIAGIGVEIVFP 200 (201)
Q Consensus 182 sTFTVRKIs~GVGVER~FP 200 (201)
-..++|++..|--.|.+||
T Consensus 42 ~~~k~k~i~tG~~~e~~~~ 60 (69)
T d1iz6a1 42 ARIEAVGIFDGKVRSIVKP 60 (69)
T ss_dssp EEEEEEETTTCCEEEEEEE
T ss_pred EEEEEEEcccCCEEEEEEc
Confidence 5677999999999999997
No 63
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=21.91 E-value=14 Score=24.49 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=15.8
Q ss_pred CCCCCCEEEEEEEeec-CCccc
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRL 165 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRi 165 (201)
.+.+||.|.|.+.--+ +|-||
T Consensus 46 ~i~~GD~V~Vel~pyd~~kgrI 67 (71)
T d1hr0w_ 46 RILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp CCCTTCEEEEECCTTCTTCCEE
T ss_pred EecCCCEEEEEECccCCCcEEE
Confidence 3789999999886555 56554
No 64
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.60 E-value=58 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCCCCEEEEEEEeecCC---cccceEEEEEEEee
Q 028968 146 IRTGDVVEIKLEVPENR---RRLSIYKGIVMSRQ 176 (201)
Q Consensus 146 Fr~GDtVrV~v~I~EnK---eRiQ~FeGIVIarr 176 (201)
-.+||+|.|.++-...+ .+=|+|.++|+..+
T Consensus 33 a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtk 66 (122)
T d1whia_ 33 ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTK 66 (122)
T ss_dssp BCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECS
T ss_pred cccCCEEEEEEeecccCCeeEcccceeeEEEEEe
Confidence 57899999998765522 56789999999865
No 65
>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=21.07 E-value=71 Score=20.75 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=28.5
Q ss_pred CCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEee
Q 028968 141 RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRI 189 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKI 189 (201)
..++.|.+|..|.|.+.+.. .+.....|. |+-.-..-.-.|+|+++
T Consensus 30 ~~~~~~~~GQ~v~l~~~~~~~~~~~~R~yS---i~s~p~~~~~~~~v~~~ 76 (111)
T d1cqxa2 30 GPVVNFEPGQYTSVAIDVPALGLQQIRQYS---LSDMPNGRTYRISVKRE 76 (111)
T ss_dssp CCCCCCCTTCEEEEEEEETTTTEEEEEEEE---CCSCCCSSCEEEEEECC
T ss_pred CcccCCCCCCEEEEEeecCCCcceeeeecc---ccCCccCCCeEEEEEEe
Confidence 45789999999999998765 444444555 22111112346677765
No 66
>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]}
Probab=20.50 E-value=60 Score=22.16 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=18.4
Q ss_pred CCCCCCEEEEEEEeec-CCcccceEE
Q 028968 145 DIRTGDVVEIKLEVPE-NRRRLSIYK 169 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E-nKeRiQ~Fe 169 (201)
.++.||.|.|.+++.+ ++.++-...
T Consensus 85 p~~~gd~v~v~~~v~~~~~~s~~~~~ 110 (159)
T d2nuja1 85 EMGMGEDYVITGRVSNFRTTSFTMEF 110 (159)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEE
T ss_pred ccccCcEEEEEEEEEecCCcEEEEEE
Confidence 4678999999999888 666655433
No 67
>d2fuja1 d.38.1.1 (A:5-122) Hypothetical protein XCC1147 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=20.39 E-value=55 Score=21.45 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=18.8
Q ss_pred CCCCCCCEEEEEEEeec-CCcccce
Q 028968 144 PDIRTGDVVEIKLEVPE-NRRRLSI 167 (201)
Q Consensus 144 PeFr~GDtVrV~v~I~E-nKeRiQ~ 167 (201)
-+++.||.|.|.+++.+ ++.++..
T Consensus 63 ~~~~~~d~v~v~~~~~~~g~~s~~~ 87 (118)
T d2fuja1 63 RPLVWPNDILVELFVERLGSSSVTI 87 (118)
T ss_dssp SCCCTTCCEEEEEEEEEECSSEEEE
T ss_pred ccccCCCceEEEEEEEEeCCeEEEE
Confidence 35678999999999988 6666644
No 68
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella oneidensis [TaxId: 70863]}
Probab=20.23 E-value=1e+02 Score=21.24 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.2
Q ss_pred CCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeec--CCccceEEEEe
Q 028968 141 RPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN--AGIHTTIRIRR 188 (201)
Q Consensus 141 kdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn--~Gi~sTFTVRK 188 (201)
...+.+.+|+.|.|.+ +.+ ..|.|+|...+- .+-..+++|+-
T Consensus 49 ~~~~~~~~g~~v~v~~----g~~--~~~~G~v~~~~~~~~~~~~~l~v~~ 92 (179)
T d3cdda2 49 AFIEPIKQGQACTVDI----GGE--RVITGYVDDWVPSYDESTITISVSG 92 (179)
T ss_dssp CCSCCCCTTCEEEEEE----TTE--EEEEEEEEEEEEEECSSEEEEEEEE
T ss_pred ccccccccccceeeec----CCe--eEEEEEEEEEEEEEcCCCcEEEEEE
Confidence 3456789999999987 334 379999988652 23345565554
No 69
>d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.16 E-value=1e+02 Score=21.21 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEEEeec
Q 028968 145 DIRTGDVVEIKLEVPE 160 (201)
Q Consensus 145 eFr~GDtVrV~v~I~E 160 (201)
.+++||+|.+..+|.+
T Consensus 90 Pi~~gd~l~~~~~v~~ 105 (154)
T d1s9ca2 90 PLPRAGKLKCEAVVAD 105 (154)
T ss_dssp CCCSSEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 3578999999999987
Done!