BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028969
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Danio rerio GN=ergic3 PE=2 SV=1
Length = 383
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 30/227 (13%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ G + T
Sbjct: 58 LFVDTSRGDKLRINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGQPVTT 117
Query: 61 EYLTDLVEKEHE-------------EHKHDHNKDHK------DDIDEKLHAFGFDEDAEN 101
E + KE E E + D DD+ E G+ +
Sbjct: 118 EAEKHDLGKEEEGVFDPSTLDPDRCESCYGAETDDLKCCNTCDDVREAYRRRGWAFKTPD 177
Query: 102 MIKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQMIFGGA 150
I++ K + EGC+VYG L+V +VAGNFH S +++V + G
Sbjct: 178 TIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGL 237
Query: 151 KNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
N+N++H I LSFG YPGI NPLD T S ++Y++K+ P
Sbjct: 238 DNINMTHFIKHLSFGKDYPGIVNPLDDTNVAAPQASMMYQYFVKIVP 284
>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus laevis GN=ergic3 PE=2 SV=1
Length = 389
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 40/233 (17%)
Query: 3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ + +E
Sbjct: 60 VDKSRGDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDLDKKPVTSEA 119
Query: 63 LTDLVEKEHEE-----HKHDHNK---------------DHKDDIDEKLHAFGFDEDAENM 102
+ K E+ D N+ + DD+ E G+ +
Sbjct: 120 DRHELGKSEEQVVFDPKTLDPNRCESCYGAETDDFSCCNSCDDVREAYRRKGWAFKTPDS 179
Query: 103 IKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHIS-----------VHGLNIYVAQ 144
I++ K + EGC+VYG L+V +VAGNFH + VH + I+ Q
Sbjct: 180 IEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQ 239
Query: 145 MIFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G N+N++H I LSFG YPG+ NPLDGT + +S F+Y++K+ P
Sbjct: 240 SF--GLDNINMTHEIKHLSFGKDYPGLVNPLDGTSIVAMQSSMMFQYFVKIVP 290
>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1
Length = 384
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 33/227 (14%)
Query: 3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ + +E
Sbjct: 60 VDKSRGDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDKKPVTSEA 119
Query: 63 LTDLVEKEHEEH------KHDHNK---------------DHKDDIDEKLHAFGFDEDAEN 101
+ K EEH D N+ + DD+ E G+ +
Sbjct: 120 DRHELGKS-EEHVVFDPKSLDPNRCESCYGAETDDFSCCNTCDDVREAYRRRGWAFKTPD 178
Query: 102 MIKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQMIFGGA 150
I++ K + EGC+VYG L+V +VAGNFH S +++V + G
Sbjct: 179 SIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGL 238
Query: 151 KNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
N+N++H I LSFG YPG+ NPLDG+ +S F+Y++K+ P
Sbjct: 239 DNINMTHEIRHLSFGRDYPGLVNPLDGSSVAAMQSSMMFQYFVKIVP 285
>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Bos taurus GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RG+ L I+IN+ FP +PC LS+DA+D++G+ ++D++ N++K RL+ G + +
Sbjct: 58 LYVDKSRGDKLKININVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGFPVSS 117
Query: 61 E-------------YLTDLVEKEHEEHKHDHNKD------HKDDIDEKLHAFGFDEDAEN 101
E + D ++ + E + + +D+ E G+ +
Sbjct: 118 EAERHELGKVEVKVFDPDSLDPDRCESCYGAEMEDIKCCNSCEDVREAYRRRGWAFKNPD 177
Query: 102 MIKKV-------KHALESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQMIFGGA 150
I++ K + EGC+VYG L+V +VAGNFH S +++V + G
Sbjct: 178 TIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGL 237
Query: 151 KNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
N+N++H I LSFG YPGI NPLD T S F+Y++KV P
Sbjct: 238 DNINMTHYIRHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVP 284
>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1
Length = 382
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 41/232 (17%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ G + +
Sbjct: 58 LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGTPVSS 117
Query: 61 EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAE-----NMIKKVKHAL----- 110
E + HE K + D +D + +AE N + V+ A
Sbjct: 118 E------AERHELGKVEVTVFGPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGA 171
Query: 111 ---------------------ESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQM 145
+ EGC+VYG L+V +VAGNFH S +++V +
Sbjct: 172 FKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDL 231
Query: 146 IFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G N+N++H I LSFG YPGI NPLD T S F+Y++KV P
Sbjct: 232 QSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVP 283
>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Homo sapiens GN=ERGIC3 PE=1 SV=1
Length = 383
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 42/233 (18%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ G + +
Sbjct: 58 LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSS 117
Query: 61 EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAE-----NMIKKVKHAL----- 110
E + HE K + D +D + +AE N + V+ A
Sbjct: 118 E------AERHELGKVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGW 171
Query: 111 ----------------------ESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQ 144
+ EGC+VYG L+V +VAGNFH S +++V
Sbjct: 172 AFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHD 231
Query: 145 MIFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
+ G N+N++H I LSFG YPGI NPLD T S F+Y++KV P
Sbjct: 232 LQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVP 284
>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Pongo abelii GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ G + +
Sbjct: 58 LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSS 117
Query: 61 E-------------YLTDLVEKEHEEHKHDHNKD------HKDDIDEKLHAFGFDEDAEN 101
E + D ++ + E + + +D+ E G+ +
Sbjct: 118 EAERHELGKVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVRETYRRRGWAFKNPD 177
Query: 102 MIKKV-------KHALESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQMIFGGA 150
I++ K + EGC+VYG L+V +VAGNFH S +++V + G
Sbjct: 178 TIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGL 237
Query: 151 KNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
N+N++H I LSFG YPGI NPLD T S F+Y++KV P
Sbjct: 238 DNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVP 284
>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Mus musculus GN=Ergic3 PE=2 SV=1
Length = 383
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RG+ L I+I++ FP +PC LS+DA+D++G+ ++D++ N++K RL+ G + +
Sbjct: 58 LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSS 117
Query: 61 EY----LTDLVEKEHEEHKHDHNK---------------DHKDDIDEKLHAFGFDEDAEN 101
E L + + + D N+ + +D+ E G+ +
Sbjct: 118 EAERHELGKVEVTVFDPNSLDPNRCESCYGAESEDIKCCNSCEDVREAYRRRGWAFKNPD 177
Query: 102 MIKKV-------KHALESGEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQMIFGGA 150
I++ K + EGC+VYG L+V +VAGNFH S +++V + G
Sbjct: 178 TIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGL 237
Query: 151 KNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
N+N++H I LSFG YPGI NPLD T S F+Y++KV P
Sbjct: 238 DNINMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVP 284
>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment
protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3
SV=1
Length = 383
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 42/233 (18%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
+ VD RGE L I++++TF LPC LS+DA+D+SG+H+ D+ NI+K RL+ G I
Sbjct: 57 LFVDTTRGEKLKINMDITFHHLPCAYLSLDAMDVSGEHQFDVAHNIFKKRLSPTGQPI-- 114
Query: 61 EYLTDLVEKEHEEHKHDHNKDHKDDI---------------------DEKLHAF---GFD 96
+ +E E +K + KD+ D + +E A+ G+
Sbjct: 115 --IEAPPIREEEINKKESVKDNNDVVGCGSCYGAEDPSKGIGCCNTCEEVRVAYSKKGWG 172
Query: 97 EDAENMIKKVKHAL------ESGEGCRVYGVLDVQRVAGNFHIS------VHGLNIYVAQ 144
D + + ++ ++GEGC+VYG + V +VAGNFH + H ++++ Q
Sbjct: 173 LDPSGIPQCIREGFTKNLVEQNGEGCQVYGFILVNKVAGNFHFAPGKSFQQHHMHVHDLQ 232
Query: 145 MIFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G+ NVSH I+ LSFG +PGI NPLD + G F+Y++KV P
Sbjct: 233 PFKDGS--FNVSHTINRLSFGNDFPGIKNPLDDVTKTEMVGVGMFQYFVKVVP 283
>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1
Length = 390
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 49/233 (21%)
Query: 3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
V+ G+ + I+ N+TFP +PC +L+VD +D+SG+ + D+ + K RL+ G II +
Sbjct: 60 VNPSHGDRMEINFNITFPRIPCQILTVDVLDVSGEFQRDIHHTVSKTRLSPSGEIISVD- 118
Query: 63 LTDLVEKEHEEHKHDHNKDHKD-----------------------DIDEKLHAFGFDEDA 99
DL + D + D D K H D DA
Sbjct: 119 --DLDIGNQQSISDDGAAECGDCYGAADFAPEDTPGCCNTCDAVRDAYGKAHWRIGDVDA 176
Query: 100 ENMIK----KVKHALESGEGCRVYGVLDVQRVAGNFHIS-----------VHGLNIYVAQ 144
K K + + EGC + G L V R+AGNFHI+ VH Y+ +
Sbjct: 177 FKQCKDENFKELYEAQKVEGCNLAGQLSVNRMAGNFHIAPGRSTQNGNQHVHDTRDYINE 236
Query: 145 MIFGGAKNVNVSHVIHDLSFGPKY-PGIH--NPLDGTVRMLHDTSGTFKYYIK 194
+ ++SH IH LSFGP +H NPLDGTV+ + ++Y+IK
Sbjct: 237 LDLH-----DMSHSIHHLSFGPPLDASVHYSNPLDGTVKKVSTADYRYEYFIK 284
>sp|O94283|ERV41_SCHPO ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=erv41 PE=1 SV=1
Length = 333
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 8 GETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLV 67
E + ++I++T A+PC L +D +D + DL ++ TE LT +
Sbjct: 69 SELMDLNIDITI-AMPCSNLRIDVVDRTK----DL--------------VLATEALT--L 107
Query: 68 EKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRV 127
E+ + + +K+D L E KK SG CR+YG L V RV
Sbjct: 108 EEAFIKDMPTSSTIYKNDRYAGLRW----ARTEKFRKKNNAEPGSGTACRIYGQLVVNRV 163
Query: 128 AGNFHISVHGLNIYVAQMIFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTSG 187
G HI+ G + + F ++N +H I +LSFG YP + N LDG +D
Sbjct: 164 NGQLHITAPGWGYGRSNIPF---HSLNFTHYIEELSFGEYYPALVNALDGHYGHANDHPF 220
Query: 188 TFKYYIKVWP 197
F+YY+ V P
Sbjct: 221 AFQYYLSVLP 230
>sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1
Length = 377
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLN--SYGHIIGT 60
VD L I+I++T A+ C + D +D++ D +++ + S
Sbjct: 66 VDKDFSSKLRINIDITV-AMKCQYVGADVLDLAETMVASTDGLVYEPAIFDLSPQQKEWQ 124
Query: 61 EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
L + + EEH + + + F + + + + + + CR++G
Sbjct: 125 RMLQRIQSRLQEEH----------SLQDVIFKSTFKSASTALPPREDDSSQPPDACRIHG 174
Query: 121 VLDVQRVAGNFHISVHGLNI-------YVAQMIFGGAKNVNVSHVIHDLSFGPKYPGIHN 173
L V +VAGNFHI+V G I ++A ++ + N SH I LSFG PGI N
Sbjct: 175 HLYVNKVAGNFHITV-GKAIPHPRGHAHLAALV--NHDSYNFSHRIDHLSFGELVPGIIN 231
Query: 174 PLDGTVRMLHDTSGTFKYYIKVWP 197
PLDGT ++ D + F+Y+I V P
Sbjct: 232 PLDGTEKIALDHNQMFQYFITVVP 255
>sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1
Length = 377
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
VD L I+I++T A+ C + D +D++ D +++
Sbjct: 66 VDKDFSSKLRINIDITV-AMKCQYVGADVLDLAETMVASADGLVYE------------PA 112
Query: 63 LTDLVEKEHEEHKH----DHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRV 118
+ DL ++ E + + + + + F + + + + +S + CR+
Sbjct: 113 VFDLSPQQKEWQRMLQLTQSRLQEEHSLQDVIFKSAFKSASTALPPREDDSSQSPDACRI 172
Query: 119 YGVLDVQRVAGNFHISVHGLNI-------YVAQMIFGGAKNVNVSHVIHDLSFGPKYPGI 171
+G L V +VAGNFHI+V G I ++A ++ ++ N SH I LSFG P I
Sbjct: 173 HGHLYVNKVAGNFHITV-GKAIPHPRGHAHLAALV--NHESYNFSHRIDHLSFGELVPAI 229
Query: 172 HNPLDGTVRMLHDTSGTFKYYIKVWP 197
NPLDGT ++ D + F+Y+I V P
Sbjct: 230 INPLDGTEKIAIDHNQMFQYFITVVP 255
>sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Homo sapiens GN=ERGIC2 PE=1 SV=2
Length = 377
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLN--SYGHIIGT 60
VD L I+I++T A+ C + D +D++ D +++ + S
Sbjct: 66 VDKDFSSKLRINIDITV-AMKCQYVGADVLDLAETMVASADGLVYEPTVFDLSPQQKEWQ 124
Query: 61 EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
L + + EEH + + + F + + + + +S CR++G
Sbjct: 125 RMLQLIQSRLQEEH----------SLQDVIFKSAFKSTSTALPPREDDSSQSPNACRIHG 174
Query: 121 VLDVQRVAGNFHISVHGLNI-------YVAQMIFGGAKNVNVSHVIHDLSFGPKYPGIHN 173
L V +VAGNFHI+V G I ++A ++ ++ N SH I LSFG P I N
Sbjct: 175 HLYVNKVAGNFHITV-GKAIPHPRGHAHLAALV--NHESYNFSHRIDHLSFGELVPAIIN 231
Query: 174 PLDGTVRMLHDTSGTFKYYIKVWP 197
PLDGT ++ D + F+Y+I V P
Sbjct: 232 PLDGTEKIAIDHNQMFQYFITVVP 255
>sp|Q7T2D4|ERGI2_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Danio rerio GN=ergic2 PE=2 SV=1
Length = 376
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 10/90 (11%)
Query: 115 GCRVYGVLDVQRVAGNFHISVHGLNI-------YVAQMIFGGAKNVNVSHVIHDLSFGPK 167
CR++G L V +VAGNFHI+V G I ++A ++ + N SH I LSFG +
Sbjct: 168 ACRIHGHLYVNKVAGNFHITV-GKAIPHPRGHAHLAALV--SHETYNFSHRIDHLSFGEE 224
Query: 168 YPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
PGI NPLDGT ++ D + F+Y+I + P
Sbjct: 225 IPGILNPLDGTEKVSADHNQMFQYFITIVP 254
>sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Mus musculus GN=Ergic2 PE=2 SV=1
Length = 377
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 10/93 (10%)
Query: 112 SGEGCRVYGVLDVQRVAGNFHISVHGLNI-------YVAQMIFGGAKNVNVSHVIHDLSF 164
+ + CR++G L V +VAGNFHI+V G I ++A ++ + N SH I LSF
Sbjct: 166 TPDACRIHGHLYVNKVAGNFHITV-GKAIPHPRGHAHLAALV--NHDSYNFSHRIDHLSF 222
Query: 165 GPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G PGI NPLDGT ++ D + F+Y+I V P
Sbjct: 223 GELVPGIINPLDGTEKIAVDHNQMFQYFITVVP 255
>sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2
Length = 415
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 43/206 (20%)
Query: 1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVD-LDTNIWKLRLNSYGHIIG 59
+ VD R L +++++TFP++PCD++++D +D SG+ ++D LD RLNS G +G
Sbjct: 57 LVVDRDRHAKLELNMDVTFPSMPCDLVNLDIMDDSGEMQLDILDAGFTMSRLNSEGRPVG 116
Query: 60 --TE------------------YLTDLVEKEHEEHKHDHNKDHK---DDIDEKLHAF--- 93
TE Y + + + ++ K D D A+
Sbjct: 117 DATELHVGGNGDGTAPVNNDPNYCGPCYGAKDQSQNENLAQEEKVCCQDCDAVRSAYLEA 176
Query: 94 ---GFDE------DAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHIS-----VHGLN 139
FD + E + K+ L EGCR+ G + R+ GN H + +
Sbjct: 177 GWAFFDGKNIEQCEREGYVSKINEHLN--EGCRIKGSAQINRIQGNLHFAPGKPYQNAYG 234
Query: 140 IYVAQMIFGGAKNVNVSHVIHDLSFG 165
+ ++ N+N +H+I+ LSFG
Sbjct: 235 HFHDTSLYDKTSNLNFNHIINHLSFG 260
>sp|Q04651|ERV41_YEAST ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1
Length = 352
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 95 FDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFGGAKNVN 154
FDE N K L GC V+G + V RV+G I+ L YVA + +
Sbjct: 146 FDESDPN-----KAHLPEFNGCHVFGSIPVNRVSGELQITAKSLG-YVASRK-APLEELK 198
Query: 155 VSHVIHDLSFGPKYPGIHNPLDGTVRMLHDTS-GTFKYYIKVWP 197
+HVI++ SFG YP I NPLD T + D T+ YY V P
Sbjct: 199 FNHVINEFSFGDFYPYIDNPLDNTAQFNQDEPLTTYVYYTSVVP 242
>sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Homo sapiens GN=ERGIC1 PE=1 SV=1
Length = 290
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 105 KVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFGGAKNVNVSHVIHDLSF 164
+K L +G GCR G + +V GNFH+S H AQ +N +++HVIH LSF
Sbjct: 104 SMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSAT---AQ-----PQNPDMTHVIHKLSF 155
Query: 165 GPKYP-----GIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G G N L G R+ + + Y +K+ P
Sbjct: 156 GDTLQVQNIHGAFNALGGADRLTSNPLASHDYILKIVP 193
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS 53
D G + + +N++ P L C+++ +D D G+HEV N K+ LN+
Sbjct: 62 DKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNN 111
>sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Danio rerio GN=ergic1 PE=2 SV=1
Length = 290
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 72/199 (36%)
Query: 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYL 63
D G + + +N++ P L CD++ +D D G+HEV GHI
Sbjct: 62 DKDSGGKIDVSLNISLPNLHCDLVGLDIQDEMGRHEV--------------GHI------ 101
Query: 64 TDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLD 123
EN +K L +G GCR G
Sbjct: 102 ------------------------------------EN---SMKVPLNNGHGCRFEGEFS 122
Query: 124 VQRVAGNFHISVHGLNIYVAQMIFGGAKNVNVSHVIHDLSFGPKY-----PGIHNPLDGT 178
+ +V GNFH+S H AQ ++ +++H+IH L+FG K G N L G
Sbjct: 123 INKVPGNFHVSTHSAT---AQ-----PQSPDMTHIIHKLAFGAKLQVQHVQGAFNALGGA 174
Query: 179 VRMLHDTSGTFKYYIKVWP 197
R+ + + Y +K+ P
Sbjct: 175 DRLQSNALASHDYILKIVP 193
>sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Mus musculus GN=Ergic1 PE=1 SV=1
Length = 290
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 105 KVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFGGAKNVNVSHVIHDLSF 164
+K L +G GCR G + +V GNFH+S H AQ +N +++H IH LSF
Sbjct: 104 SMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSAT---AQ-----PQNPDMTHTIHKLSF 155
Query: 165 GPKYP-----GIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G G N L G R+ + + Y +K+ P
Sbjct: 156 GDTLQVQNVHGAFNALGGADRLTSNPLASHDYILKIVP 193
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS 53
D G + + +N++ P L C+++ +D D G+HEV N K+ LN+
Sbjct: 62 DKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNN 111
>sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Xenopus laevis GN=ergic1 PE=2 SV=1
Length = 290
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 105 KVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFGGAKNVNVSHVIHDLSF 164
+K + + GCR G+ + +V GNFH+S H +AQ N ++ H+IH LSF
Sbjct: 104 SMKIPINNAYGCRFEGLFSINKVPGNFHVSTHSA---IAQ-----PANPDMRHIIHKLSF 155
Query: 165 GPKYP-----GIHNPLDGTVRMLHDTSGTFKYYIKVWP 197
G G N L G ++ + Y +K+ P
Sbjct: 156 GNTLQVDNIHGAFNALGGADKLASKALESHDYVLKIVP 193
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRL-NSYG 55
D G + + +N+T P LPC+V+ +D D G+HEV N K+ + N+YG
Sbjct: 62 DKDSGGKIDVTLNVTLPNLPCEVVGLDIQDEMGRHEVGHIDNSMKIPINNAYG 114
>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4
PE=2 SV=1
Length = 480
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 91 HAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFGGA 150
H ++ ++N + +K A +G GCRV G + V++V GN +S F +
Sbjct: 270 HNLALEDKSDNSSRTLKKAPSTG-GCRVEGYMRVKKVPGNLMVSARS-----GSHSFDSS 323
Query: 151 KNVNVSHVIHDLSFGPK 167
+ +N+SHV++ LSFG +
Sbjct: 324 Q-MNMSHVVNHLSFGRR 339
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 8 GETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
G+ L + N++FP+L C+ SVD D+ G + +++ I K ++S G+E+
Sbjct: 66 GDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVTKTIRKFSIDSNMRPTGSEF 120
>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3
PE=2 SV=1
Length = 483
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 70 EHEEHKHDHNKDHKDDIDEKL--------HAFGFDEDAENMIKKVKHALESGEGCRVYGV 121
EHE + D + D + E L H D + + +K +K +G GCRV G
Sbjct: 241 EHESYYGDRDTDSIVKMVEGLVAPIHPETHKVALDGKSNDTVKHLKKGPVTG-GCRVEGY 299
Query: 122 LDVQRVAGNFHISVH-GLNIYVAQMIFGGAKNVNVSHVIHDLSFG 165
+ V++V GN IS H G + + + +N+SHV+ SFG
Sbjct: 300 VRVKKVPGNLVISAHSGAHSF-------DSSQMNMSHVVSHFSFG 337
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 8 GETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLV 67
G+ L I N++FPAL C+ SVD D+ G + +++ + K ++ + G E+ + L
Sbjct: 66 GDFLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFPIDPHLRSTGAEFHSGLA 125
Query: 68 EKEHEEHKHDHNKDHKDDIDEKL 90
HN +H ++ E+
Sbjct: 126 L---------HNINHGEETKEEF 139
>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp.
japonica GN=PDIL5-4 PE=2 SV=1
Length = 485
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 8 GETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
GE L I N++FPAL C+ SVD D+ G + +++ + K ++ G+E+
Sbjct: 66 GEFLRIDFNLSFPALSCEFASVDVSDVLGTNRLNITKTVRKYSIDRNLVPTGSEF 120
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 85 DIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQ 144
+I + H ++ + + K GCR+ G + V++V G+ IS
Sbjct: 264 NIPKDAHVLALEDKSNKTVDPAKRPAPLTSGCRIEGFVRVKKVPGSVVISARS-----GS 318
Query: 145 MIFGGAKNVNVSHVIHDLSFGPK 167
F ++ +NVSH + SFG +
Sbjct: 319 HSFDPSQ-INVSHYVTQFSFGKR 340
>sp|Q9C1K8|ALG3_NEUCR Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=alg-3 PE=3 SV=1
Length = 442
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 110 LESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFGGAKNVNVSHVIHDLSFGPKYP 169
+ G G VY V G +H++ G NI +AQ +F G V ++ V+ + K P
Sbjct: 82 VRGGTGPLVYPAAHVYIYTGLYHLTDEGRNILLAQQLFAGLYMVTLA-VVMGCYWQAKAP 140
Query: 170 GIHNPLDGTVRMLHD 184
PL + LH
Sbjct: 141 PYLFPLLTLSKRLHS 155
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 65 DLVEKEHE-EHKHDHNKDHKDDID 87
DL + E + EH HDHN DH+D ++
Sbjct: 414 DLAQGESDHEHDHDHNSDHEDKVN 437
>sp|P97924|KALRN_RAT Kalirin OS=Rattus norvegicus GN=Kalrn PE=1 SV=3
Length = 2959
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 63 LTDLVEKEHEEHKHDHNKDH--KDDIDEKLHAFGFDEDAENMIKKVKHALE------SGE 114
+T L++K H +H H H K +D+ F++DAE M + H E +
Sbjct: 263 ITSLLDKLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWISHNKELFLQSHTEI 322
Query: 115 GCRVYGVLDVQRVAGNFHISVHGLNIYV 142
G LD+Q + H +++ +N YV
Sbjct: 323 GVSYQHALDLQ--TQHNHFAMNSMNAYV 348
>sp|A2CG49|KALRN_MOUSE Kalirin OS=Mus musculus GN=Kalrn PE=1 SV=1
Length = 2964
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 63 LTDLVEKEHEEHKHDHNKDH--KDDIDEKLHAFGFDEDAENMIKKVKHALE------SGE 114
+T L++K H +H H H K +D+ F++DAE M + H E +
Sbjct: 263 ITSLLDKLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWISHNKELFLQSHTEI 322
Query: 115 GCRVYGVLDVQRVAGNFHISVHGLNIYV 142
G LD+Q + H +++ +N YV
Sbjct: 323 GVSYQHALDLQ--TQHNHFAMNSMNAYV 348
>sp|O60229|KALRN_HUMAN Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2
Length = 2985
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 63 LTDLVEKEHEEHKHDHNKDH--KDDIDEKLHAFGFDEDAENMIKKVKHALE------SGE 114
+T L++K H +H H H K +D+ F++DAE M + H E +
Sbjct: 281 ITSLLDKLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWISHNKELFLQSHTEI 340
Query: 115 GCRVYGVLDVQRVAGNFHISVHGLNIYV 142
G LD+Q + H +++ +N YV
Sbjct: 341 GVSYQYALDLQ--TQHNHFAMNSMNAYV 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,299,787
Number of Sequences: 539616
Number of extensions: 3824736
Number of successful extensions: 11133
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 10957
Number of HSP's gapped (non-prelim): 119
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)