Query 028969
Match_columns 201
No_of_seqs 116 out of 547
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1brv_A Protein G, BRSV-G regio 22.5 22 0.00074 19.4 0.3 9 18-26 10-18 (32)
2 3dsh_A IRF-5, interferon regul 18.9 65 0.0022 26.0 2.6 28 160-199 164-191 (246)
3 2ccv_A Helix pomatia agglutini 13.4 51 0.0017 22.7 0.5 31 9-39 31-61 (101)
4 3a77_A IRF-3, interferon regul 11.2 69 0.0024 25.7 0.7 11 160-170 159-169 (242)
5 3ctl_A D-allulose-6-phosphate 9.5 1.1E+02 0.0037 24.1 1.3 12 22-33 24-35 (231)
6 1tqx_A D-ribulose-5-phosphate 9.3 1.2E+02 0.0041 23.8 1.5 12 23-34 31-42 (227)
7 3ovp_A Ribulose-phosphate 3-ep 9.2 1.2E+02 0.004 23.8 1.4 13 22-34 29-41 (228)
8 3inp_A D-ribulose-phosphate 3- 8.3 1.3E+02 0.0045 23.9 1.4 12 23-34 53-64 (246)
9 1sfp_A ASFP; spermadhesin, bov 8.1 4.5E+02 0.015 17.3 4.1 30 4-35 36-65 (114)
10 1spp_B Major seminal plasma gl 7.6 4.7E+02 0.016 17.3 4.0 30 4-35 35-64 (116)
No 1
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=22.51 E-value=22 Score=19.44 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=7.4
Q ss_pred EeCccCCCe
Q 028969 18 TFPALPCDV 26 (201)
Q Consensus 18 tfp~~PC~~ 26 (201)
+||.+||..
T Consensus 10 ~l~~VPCsi 18 (32)
T 1brv_A 10 TLPYVPCST 18 (32)
T ss_pred ccccccccc
Confidence 589999975
No 2
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=18.88 E-value=65 Score=25.95 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=18.4
Q ss_pred eEeeeCCCCCCCCCCCCCceEEecCCceeEEEEeEEEeee
Q 028969 160 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKVWPWF 199 (201)
Q Consensus 160 ~~lsFG~~~~~~~~PLDg~~~~~~~~~~~~~Y~lkvVPT~ 199 (201)
=.|.||+++|.. .|+.. +..+ +||||+.
T Consensus 164 I~LcFGEe~pd~-~p~ek-------kLI~----VqV~p~~ 191 (246)
T 3dsh_A 164 IFFCFGEEWPDR-KPREK-------KLIT----VQVVPVA 191 (246)
T ss_dssp EEEEESSCSSCS-SCGGG-------CSEE----EEEEEHH
T ss_pred EEEEECCcCCCC-Ccccc-------cEEE----EEEEHHH
Confidence 479999999863 35533 2333 6888864
No 3
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=13.40 E-value=51 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=26.5
Q ss_pred CeeeEEEEEEeCccCCCeeeeeeeecCCCce
Q 028969 9 ETLPIHINMTFPALPCDVLSVDAIDMSGKHE 39 (201)
Q Consensus 9 ~kl~In~DItfp~~PC~~lslDv~D~~G~~~ 39 (201)
....|.|+-.|+..|-=.+++..+|.....+
T Consensus 31 ~~~~V~F~~~F~~~P~V~v~l~~lD~~~~~n 61 (101)
T 2ccv_A 31 LAKNITFASPYCRPPVVLLSITQLDVEQSQN 61 (101)
T ss_dssp EEEEEECSSCCSSCCEEEEEEEEEEECTTSC
T ss_pred EEEEeEeCcccCCCCEEEEEeEEEecCCCcc
Confidence 4578999999999999999999999986543
No 4
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A
Probab=11.17 E-value=69 Score=25.72 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=9.3
Q ss_pred eEeeeCCCCCC
Q 028969 160 HDLSFGPKYPG 170 (201)
Q Consensus 160 ~~lsFG~~~~~ 170 (201)
=.|.||++.|.
T Consensus 159 I~LcFGEe~Pd 169 (242)
T 3a77_A 159 LWFCVGESWPQ 169 (242)
T ss_dssp EEEEECCSSTT
T ss_pred EEEEeCCcCCC
Confidence 46999999985
No 5
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=9.46 E-value=1.1e+02 Score=24.09 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=10.1
Q ss_pred cCCCeeeeeeee
Q 028969 22 LPCDVLSVDAID 33 (201)
Q Consensus 22 ~PC~~lslDv~D 33 (201)
.-++++|+||||
T Consensus 24 ~gad~lHvDvmD 35 (231)
T 3ctl_A 24 SHADYFHIDIMD 35 (231)
T ss_dssp TTCSCEEEEEEC
T ss_pred cCCCEEEEEEEe
Confidence 357889999998
No 6
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=9.29 E-value=1.2e+02 Score=23.78 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=10.2
Q ss_pred CCCeeeeeeeec
Q 028969 23 PCDVLSVDAIDM 34 (201)
Q Consensus 23 PC~~lslDv~D~ 34 (201)
-++++|+|+||-
T Consensus 31 g~d~iHvDvmDg 42 (227)
T 1tqx_A 31 GAEWIHLDVMDM 42 (227)
T ss_dssp TCSEEEEEEEBS
T ss_pred CCCEEEEEEEeC
Confidence 478999999984
No 7
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=9.20 E-value=1.2e+02 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=10.7
Q ss_pred cCCCeeeeeeeec
Q 028969 22 LPCDVLSVDAIDM 34 (201)
Q Consensus 22 ~PC~~lslDv~D~ 34 (201)
.-++++|+||||-
T Consensus 29 ~g~d~~h~DVmDg 41 (228)
T 3ovp_A 29 SGADYLHLDVMDG 41 (228)
T ss_dssp TTCSCEEEEEEBS
T ss_pred cCCCEEEEEecCC
Confidence 3578999999993
No 8
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=8.33 E-value=1.3e+02 Score=23.94 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=10.0
Q ss_pred CCCeeeeeeeec
Q 028969 23 PCDVLSVDAIDM 34 (201)
Q Consensus 23 PC~~lslDv~D~ 34 (201)
-++++|+||||-
T Consensus 53 G~d~lHvDVmDg 64 (246)
T 3inp_A 53 GADNIHFDVMDN 64 (246)
T ss_dssp TCCCEEEEEEBS
T ss_pred CCCEEEEEecCC
Confidence 468899999993
No 9
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=8.09 E-value=4.5e+02 Score=17.31 Aligned_cols=30 Identities=20% Similarity=0.332 Sum_probs=21.9
Q ss_pred cCCCCCeeeEEEEEEeCccCCCeeeeeeeecC
Q 028969 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMS 35 (201)
Q Consensus 4 D~~~~~kl~In~DItfp~~PC~~lslDv~D~~ 35 (201)
....+.++.|.|.- | .+.|..=.|.|.|-.
T Consensus 36 ~~~~g~~I~l~f~~-f-~l~C~~D~l~i~dg~ 65 (114)
T 1sfp_A 36 QMPPEYHVRVSIQY-L-QLNCNKESLEIIDGL 65 (114)
T ss_dssp ECCTTCEEEEEEEE-E-ECCTTTEEEEEESSS
T ss_pred EeCCCCEEEEEEee-e-eeecCCCEEEEEcCC
Confidence 34566788888874 6 889987778888754
No 10
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=7.57 E-value=4.7e+02 Score=17.30 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=21.7
Q ss_pred cCCCCCeeeEEEEEEeCccCCCeeeeeeeecC
Q 028969 4 DLKRGETLPIHINMTFPALPCDVLSVDAIDMS 35 (201)
Q Consensus 4 D~~~~~kl~In~DItfp~~PC~~lslDv~D~~ 35 (201)
....+.++.|.|. .| .+.|..=.|.|.|-.
T Consensus 35 ~~~~g~~I~l~f~-~f-~l~C~~D~l~i~dg~ 64 (116)
T 1spp_B 35 LMKPDQKVRMAIP-YL-NLACGKEYVEVFDGL 64 (116)
T ss_dssp ECCTTCEEEEEEE-EE-ECCBTTEEEEEESSS
T ss_pred EeCCCCEEEEEEe-eC-cccCCCCEEEEEcCC
Confidence 3455678888887 46 889987777787753
Done!