BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028970
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 81/153 (52%), Gaps = 26/153 (16%)
Query: 58 DTFRAPPLPLPYDV---VFGC-----------------PPSTDSESVGETVSGGSFETLA 97
+ FR+ P PLPYD F P +DS++ E+ G +
Sbjct: 75 EAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWAN 134
Query: 98 MCEVVEDADCKTQASS-----LIASPRKSEVSQL-NVFAASEEEDTCPICLEEYDTENPK 151
+ D D K + SS ++ S KS ++ N++ SE+ED CP CLEEY +ENPK
Sbjct: 135 NKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPK 194
Query: 152 LITKCEHHFHLSCILEWNERSESCPICDQDAVF 184
++TKC HHFHLSCI EW ERSE+CP+C + F
Sbjct: 195 IVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 227
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185
+D C ICLE + ++P +T C+H +HL CI+EW++RS+ CPIC Q V R
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLR 93
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
+D C ICLE + +P +T C+H +HL CILEW +RS CP+C Q
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQ 75
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 92 SFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENP 150
+FE L+ + + K L+ K +++ N AS +D+C +CL+++ E
Sbjct: 147 TFEELS--SIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 151 KLITKCEHHFHLSCILEWNERSESCPICDQD 181
+ + C H FHL CI W R SCP+C +D
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMCRRD 235
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 108 KTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCIL 166
K L+ K ++ N ASE D+C +CL+++ E + + C H FHL CI
Sbjct: 166 KGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCID 225
Query: 167 EWNERSESCPICDQD 181
W R SCP+C +D
Sbjct: 226 NWLLRHGSCPMCRRD 240
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ--DA 182
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q D+
Sbjct: 91 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDS 148
Query: 183 VFRYVIVATD 192
+F V D
Sbjct: 149 IFHSVRAEDD 158
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S I S +K E+ + + CPICL EY T E + + +CEH FH CI W +
Sbjct: 302 STIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKL 361
Query: 172 SESCPICDQD 181
SCP+C +
Sbjct: 362 HSSCPVCRSN 371
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S+I S +K+E+ + + ++ CPICL EY + E + I +C+H FH CI W +
Sbjct: 295 SIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKI 354
Query: 172 SESCPIC 178
SCP+C
Sbjct: 355 HGSCPLC 361
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ--DA 182
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q D+
Sbjct: 90 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDS 147
Query: 183 VFRYVIVATD 192
+F V D
Sbjct: 148 IFHSVRAEDD 157
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E +D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQ 180
++CP+C Q
Sbjct: 580 DTCPMCHQ 587
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQDAV 183
+C Q V
Sbjct: 280 VCKQKVV 286
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQDAV 183
+C Q V
Sbjct: 280 VCKQKVV 286
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQ 180
++CP+C Q
Sbjct: 580 DTCPMCHQ 587
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQ 180
++CP+C Q
Sbjct: 580 DTCPMCHQ 587
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 85 GETVSGGSFETLAMC-EVVEDADCKTQASSLIASPRKSEVSQLNVFAASEE------EDT 137
+ +GG + MC + C+ +A + R+S V +++ + +D
Sbjct: 561 AQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKISALPEATPAQLQAFDDV 620
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
C IC +E + IT+C H FH C+ +W + CP+C +
Sbjct: 621 CAICYQEMYSAK---ITRCRHFFHGVCLRKWLYVQDRCPLCHE 660
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 127 NVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
NV + E+ C +CL E+ DT+ +L+ C H FHL CI W + +CP+C +
Sbjct: 196 NVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRR 250
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 128 VFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQD 181
V ++++ + CP+CL E++ E + C H FH +CIL W ++ SCP+C +
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHE 131
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 134 EEDTCPICLEEYD-TENPKLITKCEHHFHLSCILEWNERSESCPIC 178
E CP+CL E++ E+ +L+ KC H FH+SCI W +CP+C
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
C ICL++ T E + + KC+H FHL C+ +W R SCPIC Q
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQDAV 183
+C Q V
Sbjct: 280 VCKQKVV 286
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQDAV 183
+C Q V
Sbjct: 280 VCKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQDAV 183
+C Q V
Sbjct: 280 VCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQDAV 183
+C Q V
Sbjct: 280 VCKQKVV 286
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 119 RKSEVSQLNVFAASEEE------DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R+ V+++ S +E D C IC Y N +IT C H FH C+ +W
Sbjct: 512 RRDAVNKIKSLPVSTKEQLEQHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQ 568
Query: 173 ESCPIC 178
E+CP+C
Sbjct: 569 ETCPLC 574
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 125 QLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ + S++ C +CL ++++ E +L+ KC H FH+ CI +W E+ +CP+C
Sbjct: 110 RFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
C +CL ++ D E +L+ KC H FH+ CI +W E+ +CP+C
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 165
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVAT 191
C +CL E+ D E+ +L+ +C H FH CI W + +CP+C + F V +A+
Sbjct: 157 CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLAS 211
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 105 ADCKTQASSLIASPRKS----EVSQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHH 159
A + QA L AS ++ + S + +E C +CL E+ D E +LI KC H
Sbjct: 107 ATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHV 166
Query: 160 FHLSCILEWNERSESCPICDQDAV 183
FH CI W +CP+C D +
Sbjct: 167 FHPGCIDAWLRSHTTCPLCRADLI 190
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 105 ADCKTQASSLIASP--RKSEVSQLNVFAASEEEDT----CPICLEEYD-TENPKLITKCE 157
AD T A+S++AS + + L VF S+E C +CL E++ +E +++ C+
Sbjct: 80 ADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQ 139
Query: 158 HHFHLSCILEWNERSESCPIC 178
H FH+ CI W +CP+C
Sbjct: 140 HTFHVDCIDMWFHSHSTCPLC 160
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 120 KSEVSQLNVFAASEEEDT----CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K +++ L ++E+ CP+C E+Y E C H FH SCI+ W E ++C
Sbjct: 207 KEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTC 266
Query: 176 PIC 178
P+C
Sbjct: 267 PVC 269
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 124 SQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQDA 182
S + +E CP+CL E+ D E +LI +C H FH CI W +CP+C +
Sbjct: 104 STVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANL 163
Query: 183 V 183
V
Sbjct: 164 V 164
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177
K ++ L+ F ++ TC +C+ EY N C H +H+ CI W + +CPI
Sbjct: 548 KEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPI 607
Query: 178 CDQDAVFRYVIVATDHSKV 196
C R V+VA++ +
Sbjct: 608 C-----RRAVLVASNRESI 621
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 105 ADCKTQASSLIASPRKSEVSQLNVFAASEEE-------DTCPICLEEYDTENPKLITKCE 157
A C Q++ K +SQL + + E + C +C+E Y T++ I C+
Sbjct: 227 AQCGNQSNR---KETKKAISQLQLHRVKKGEKGIDIDAENCAVCIENYKTKDLVRILPCK 283
Query: 158 HHFHLSCILEWNERSESCPICDQDAV 183
H FH CI W +CP+C D +
Sbjct: 284 HIFHRLCIDPWLIEHRTCPMCKLDVI 309
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 116 ASPR---KSEVSQL-----NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE 167
A PR K+++ QL N+ E+ C +C ++++ + C H FH C+ +
Sbjct: 366 AKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDK 425
Query: 168 WNERSESCPICDQDA 182
W + + +CPIC DA
Sbjct: 426 WLKTNRTCPICRADA 440
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ D C IC Y N +IT C H FH C+ +W E+CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 116 ASPR---KSEVSQL-----NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE 167
A PR K+++ QL N + E+ C +C +++ + C H FH C+ +
Sbjct: 350 AKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDK 409
Query: 168 WNERSESCPICDQDA 182
W + + +CPIC DA
Sbjct: 410 WLKANRTCPICRADA 424
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 135 EDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ TC ICL EY + E +++ +C+H+FHL C+ W + + SCP+C
Sbjct: 135 DTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVC 179
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 116 ASPR---KSEVSQL-----NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE 167
A PR K+++ QL N + E+ C +C +++ + C H FH C+ +
Sbjct: 268 AKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDK 327
Query: 168 WNERSESCPICDQDA 182
W + + +CPIC DA
Sbjct: 328 WLKANRTCPICRADA 342
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177
F + ++ ++CPICL + + C H+F L CI+EW++ + SCP+
Sbjct: 99 FNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV 147
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQD 181
C ICL E+ D E +L+ KC+H FH CI W E +CP+C +
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRAN 172
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 109 TQASSLIASPRKSEVSQLNVFAASE-------EEDTCPICLEEYDTENPKLITKCEHHFH 161
T+ S I + K + QL + E ED C +C + Y ++ I C+H FH
Sbjct: 222 TRRRSQIKTDVKKAIDQLQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFH 281
Query: 162 LSCILEWNERSESCPICDQDAV 183
+CI W +CP+C D +
Sbjct: 282 KACIDPWLLAHRTCPMCKCDIL 303
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 116 ASPR---KSEVSQL-----NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE 167
A PR K+++ QL N + E+ C +C +++ + C H FH C+ +
Sbjct: 325 AKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDK 384
Query: 168 WNERSESCPICDQDA 182
W + + +CPIC DA
Sbjct: 385 WLKANRTCPICRADA 399
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 134 EEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
E TC ICL EY + E +++ +C+H+FH+ C+ W + + SCP+C
Sbjct: 132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVC 177
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVATD 192
+ D C IC ++ + +IT C H FH +C+ +W E+CP+C + ++
Sbjct: 532 QHNDICSICFQDMKS---AVITPCSHFFHAACLKKWLYVQETCPLCHGQLKSQLQPTSSP 588
Query: 193 HSKVQGT 199
+ QGT
Sbjct: 589 GTPTQGT 595
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 120 KSEVSQLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179
K +V +LN+ + C +CLE++ + I C+H FH C+++W E + CP+C+
Sbjct: 66 KEKVKELNL------HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN 119
Query: 180 QDAVFRYVIVATDHSK 195
+ +A HSK
Sbjct: 120 MPV----LQLAQLHSK 131
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCPICDQ 180
+ +E D C ICL+EY+ + I C H +H C+ W + ++CPIC Q
Sbjct: 221 YQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQ 273
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC 178
CPICL EY + E + + +C+H FH+ CI EW + SCP+C
Sbjct: 253 CPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
SE C +C+ +Y T N C H FH+ CI W + +CPIC Q
Sbjct: 626 SELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQ 674
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 121 SEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICD 179
+ + ++ + S E +C +CL+++ E + + C H FHL CI +W R SCP+C
Sbjct: 159 NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
Query: 180 Q 180
+
Sbjct: 219 R 219
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183
++ C IC EE T +L C H FH SC+ W +R ++CP C D +
Sbjct: 288 DNVCIICREEMVTGAKRL--PCNHIFHTSCLRSWFQRQQTCPTCRMDVL 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,005,681
Number of Sequences: 539616
Number of extensions: 2905796
Number of successful extensions: 7821
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 7341
Number of HSP's gapped (non-prelim): 714
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)