Query 028970
Match_columns 201
No_of_seqs 250 out of 1736
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.6 6.3E-16 2.1E-20 104.8 5.1 61 132-192 12-72 (78)
2 1iym_A EL5; ring-H2 finger, ub 99.6 7.9E-16 2.7E-20 97.3 4.0 51 133-183 3-54 (55)
3 1x4j_A Ring finger protein 38; 99.6 1E-15 3.5E-20 103.1 4.1 53 132-184 20-72 (75)
4 2ep4_A Ring finger protein 24; 99.6 1.9E-15 6.4E-20 101.4 5.4 54 133-186 13-66 (74)
5 2l0b_A E3 ubiquitin-protein li 99.6 9.7E-16 3.3E-20 107.2 4.0 53 132-184 37-89 (91)
6 2kiz_A E3 ubiquitin-protein li 99.6 1.9E-15 6.3E-20 100.1 5.1 54 132-185 11-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.5 4.2E-15 1.5E-19 101.8 4.9 54 133-186 13-78 (81)
8 2djb_A Polycomb group ring fin 99.5 5.9E-15 2E-19 98.6 5.2 57 132-190 12-68 (72)
9 3dpl_R Ring-box protein 1; ubi 99.5 3.6E-15 1.2E-19 107.3 4.3 68 118-185 17-102 (106)
10 2ecm_A Ring finger and CHY zin 99.5 9E-15 3.1E-19 92.3 4.2 51 133-183 3-54 (55)
11 3ng2_A RNF4, snurf, ring finge 99.5 6.7E-15 2.3E-19 97.7 3.5 57 133-189 8-68 (71)
12 1v87_A Deltex protein 2; ring- 99.5 2.3E-14 8E-19 103.8 5.4 53 133-185 23-95 (114)
13 1chc_A Equine herpes virus-1 r 99.5 2.1E-14 7.1E-19 94.6 4.4 50 133-184 3-52 (68)
14 2d8t_A Dactylidin, ring finger 99.5 1.3E-14 4.3E-19 96.7 3.3 54 132-188 12-65 (71)
15 2xeu_A Ring finger protein 4; 99.5 1.7E-14 5.7E-19 93.7 3.5 57 134-190 2-62 (64)
16 2ea6_A Ring finger protein 4; 99.5 2.7E-14 9.1E-19 94.1 4.0 52 133-184 13-68 (69)
17 2ecn_A Ring finger protein 141 99.5 2E-14 6.7E-19 95.3 2.7 54 133-190 13-66 (70)
18 4a0k_B E3 ubiquitin-protein li 99.5 6.4E-15 2.2E-19 107.6 0.2 68 118-185 28-113 (117)
19 2ct2_A Tripartite motif protei 99.4 1E-13 3.5E-18 95.6 5.4 59 132-190 12-74 (88)
20 2d8s_A Cellular modulator of i 99.4 6.1E-14 2.1E-18 95.8 4.1 56 131-187 11-73 (80)
21 2yur_A Retinoblastoma-binding 99.4 8.2E-14 2.8E-18 93.5 4.1 55 132-189 12-69 (74)
22 2ysl_A Tripartite motif-contai 99.4 1.9E-13 6.5E-18 91.1 5.9 52 132-186 17-71 (73)
23 3lrq_A E3 ubiquitin-protein li 99.4 6.1E-14 2.1E-18 99.6 3.2 56 133-190 20-76 (100)
24 2ecy_A TNF receptor-associated 99.4 1.7E-13 5.7E-18 89.8 4.2 51 133-186 13-64 (66)
25 2csy_A Zinc finger protein 183 99.4 2.2E-13 7.6E-18 92.8 4.8 48 133-183 13-60 (81)
26 2ecw_A Tripartite motif-contai 99.4 4E-13 1.4E-17 91.7 6.0 57 133-192 17-79 (85)
27 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 103.5 3.1 50 133-185 51-100 (138)
28 1t1h_A Gspef-atpub14, armadill 99.4 4.4E-13 1.5E-17 90.6 5.4 54 133-189 6-60 (78)
29 2y43_A E3 ubiquitin-protein li 99.4 1.9E-13 6.5E-18 96.6 3.5 53 133-187 20-72 (99)
30 2egp_A Tripartite motif-contai 99.4 1.6E-13 5.4E-18 92.8 2.5 54 133-189 10-70 (79)
31 2ecv_A Tripartite motif-contai 99.4 5.6E-13 1.9E-17 91.0 4.6 55 133-190 17-77 (85)
32 4ap4_A E3 ubiquitin ligase RNF 99.3 6.9E-13 2.4E-17 97.8 4.6 61 133-193 5-69 (133)
33 1g25_A CDK-activating kinase a 99.3 1.2E-12 4.1E-17 85.4 5.2 56 134-189 2-60 (65)
34 2ckl_A Polycomb group ring fin 99.3 6.9E-13 2.4E-17 95.2 4.3 51 133-185 13-63 (108)
35 2ysj_A Tripartite motif-contai 99.3 2E-12 6.7E-17 83.8 5.4 44 132-178 17-63 (63)
36 3ztg_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 90.4 5.1 49 132-183 10-61 (92)
37 3fl2_A E3 ubiquitin-protein li 99.3 1.8E-12 6.2E-17 95.2 4.0 49 133-184 50-99 (124)
38 1e4u_A Transcriptional repress 99.3 4.7E-12 1.6E-16 86.0 5.4 63 132-195 8-73 (78)
39 2ckl_B Ubiquitin ligase protei 99.3 1.9E-12 6.6E-17 99.7 3.7 50 133-184 52-102 (165)
40 4ap4_A E3 ubiquitin ligase RNF 99.3 4.1E-12 1.4E-16 93.6 4.9 60 131-190 68-131 (133)
41 2ecj_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 81.0 3.8 43 133-178 13-58 (58)
42 2kr4_A Ubiquitin conjugation f 99.2 5.2E-12 1.8E-16 87.1 4.4 54 133-189 12-65 (85)
43 2ct0_A Non-SMC element 1 homol 99.2 1.3E-11 4.3E-16 82.8 5.7 52 133-186 13-66 (74)
44 3hct_A TNF receptor-associated 99.2 6.2E-12 2.1E-16 91.7 4.3 54 132-188 15-69 (118)
45 1jm7_A BRCA1, breast cancer ty 99.2 4.3E-12 1.5E-16 91.3 3.0 53 134-189 20-75 (112)
46 1wgm_A Ubiquitin conjugation f 99.2 1E-11 3.4E-16 87.9 4.6 54 133-189 20-74 (98)
47 2kre_A Ubiquitin conjugation f 99.2 8.9E-12 3.1E-16 88.5 4.2 54 133-189 27-80 (100)
48 1z6u_A NP95-like ring finger p 99.2 7.6E-12 2.6E-16 95.1 4.0 50 133-185 76-126 (150)
49 1rmd_A RAG1; V(D)J recombinati 99.2 1.1E-11 3.8E-16 89.9 3.8 52 134-188 22-74 (116)
50 3l11_A E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 92.7 0.4 49 133-184 13-62 (115)
51 2vje_A E3 ubiquitin-protein li 99.1 2.7E-11 9.3E-16 79.0 3.4 49 133-184 6-57 (64)
52 1jm7_B BARD1, BRCA1-associated 99.1 9E-12 3.1E-16 90.7 0.3 50 133-186 20-69 (117)
53 3knv_A TNF receptor-associated 99.1 3E-11 1E-15 90.9 3.1 50 133-185 29-79 (141)
54 2yu4_A E3 SUMO-protein ligase 99.1 9E-11 3.1E-15 82.3 4.1 54 133-189 5-68 (94)
55 2vje_B MDM4 protein; proto-onc 99.1 6.9E-11 2.3E-15 76.8 3.1 50 133-184 5-56 (63)
56 2y1n_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 100.4 5.3 53 134-189 331-384 (389)
57 4ic3_A E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 80.5 1.4 45 134-185 23-68 (74)
58 1bor_A Transcription factor PM 99.0 3.4E-11 1.2E-15 76.4 0.6 48 132-185 3-50 (56)
59 3hcs_A TNF receptor-associated 99.0 2.9E-10 1E-14 87.7 4.3 55 131-188 14-69 (170)
60 2c2l_A CHIP, carboxy terminus 99.0 2.6E-10 9E-15 93.8 3.9 54 133-189 206-260 (281)
61 2f42_A STIP1 homology and U-bo 98.9 1.1E-09 3.7E-14 85.4 4.4 56 132-190 103-159 (179)
62 2ecg_A Baculoviral IAP repeat- 98.9 4.2E-10 1.5E-14 75.4 1.8 45 134-185 24-69 (75)
63 3htk_C E3 SUMO-protein ligase 98.9 1.1E-09 3.8E-14 89.7 4.1 57 131-189 177-237 (267)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.8 1.9E-09 6.3E-14 69.4 3.7 49 133-184 4-59 (60)
65 2ea5_A Cell growth regulator w 98.8 1.9E-09 6.4E-14 71.0 3.8 46 133-185 13-59 (68)
66 2bay_A PRE-mRNA splicing facto 98.8 2.1E-09 7.1E-14 69.4 3.5 55 136-192 4-58 (61)
67 2yho_A E3 ubiquitin-protein li 98.8 9.4E-10 3.2E-14 74.6 1.5 46 134-186 17-63 (79)
68 3k1l_B Fancl; UBC, ring, RWD, 98.7 1.9E-09 6.5E-14 91.3 1.0 53 132-184 305-373 (381)
69 1wim_A KIAA0161 protein; ring 98.7 3.1E-09 1.1E-13 74.1 1.9 53 133-185 3-67 (94)
70 3t6p_A Baculoviral IAP repeat- 98.5 1.2E-08 4.2E-13 87.2 0.6 46 133-185 293-339 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 63.6 3.8 49 137-187 3-52 (101)
72 3nw0_A Non-structural maintena 97.9 1.1E-05 3.9E-10 65.4 4.7 53 133-187 178-232 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0034 1.2E-07 43.5 2.8 34 134-169 2-37 (101)
74 2ko5_A Ring finger protein Z; 95.8 0.0048 1.6E-07 42.4 2.6 55 134-192 27-81 (99)
75 2lri_C Autoimmune regulator; Z 93.4 0.055 1.9E-06 34.7 2.8 46 133-181 10-59 (66)
76 1wil_A KIAA1045 protein; ring 92.3 0.14 4.9E-06 34.3 3.6 35 133-168 13-47 (89)
77 2k16_A Transcription initiatio 91.5 0.057 2E-06 35.3 1.1 52 133-184 16-71 (75)
78 3m62_A Ubiquitin conjugation f 90.3 0.25 8.7E-06 47.1 4.6 55 132-189 888-943 (968)
79 2l5u_A Chromodomain-helicase-D 89.7 0.17 5.8E-06 31.7 2.0 46 132-180 8-57 (61)
80 2ysm_A Myeloid/lymphoid or mix 89.5 0.098 3.4E-06 36.8 0.9 39 132-170 4-42 (111)
81 1f62_A Transcription factor WS 88.6 0.26 8.7E-06 29.5 2.2 44 137-180 2-49 (51)
82 1mm2_A MI2-beta; PHD, zinc fin 88.6 0.083 2.8E-06 33.2 -0.0 49 132-183 6-58 (61)
83 3i2d_A E3 SUMO-protein ligase 88.4 0.48 1.6E-05 40.4 4.6 53 134-188 248-304 (371)
84 4fo9_A E3 SUMO-protein ligase 87.6 0.58 2E-05 39.8 4.5 53 134-188 214-270 (360)
85 1we9_A PHD finger family prote 85.6 0.13 4.3E-06 32.5 -0.5 49 132-180 3-57 (64)
86 3o36_A Transcription intermedi 85.5 0.17 5.7E-06 38.8 0.1 48 133-183 2-53 (184)
87 2lbm_A Transcriptional regulat 84.5 1 3.6E-05 33.2 4.0 48 131-181 59-117 (142)
88 2yql_A PHD finger protein 21A; 83.3 0.11 3.7E-06 32.0 -1.5 45 132-179 6-54 (56)
89 3u5n_A E3 ubiquitin-protein li 82.8 0.19 6.6E-06 39.3 -0.6 48 132-182 4-55 (207)
90 1z60_A TFIIH basal transcripti 82.6 0.63 2.2E-05 29.1 1.9 43 136-178 16-58 (59)
91 2puy_A PHD finger protein 21A; 81.9 0.12 4.2E-06 32.2 -1.7 48 133-183 3-54 (60)
92 1xwh_A Autoimmune regulator; P 80.5 0.23 7.9E-06 31.6 -0.8 46 133-181 6-55 (66)
93 2vpb_A Hpygo1, pygopus homolog 80.1 1.6 5.5E-05 27.6 3.2 35 132-166 5-41 (65)
94 2l43_A N-teminal domain from h 79.8 0.29 1E-05 33.0 -0.5 52 132-183 22-77 (88)
95 1fp0_A KAP-1 corepressor; PHD 79.6 0.8 2.7E-05 31.0 1.7 47 132-181 22-72 (88)
96 3lqh_A Histone-lysine N-methyl 77.7 0.77 2.6E-05 35.3 1.3 47 136-182 3-64 (183)
97 2e6r_A Jumonji/ARID domain-con 77.5 0.15 5E-06 34.9 -2.6 49 133-181 14-66 (92)
98 3v43_A Histone acetyltransfera 76.8 4.3 0.00015 28.3 4.9 34 133-166 3-42 (112)
99 3ql9_A Transcriptional regulat 76.0 1.6 5.4E-05 31.6 2.5 48 131-181 53-111 (129)
100 2lv9_A Histone-lysine N-methyl 74.5 0.88 3E-05 31.2 0.8 46 134-180 27-75 (98)
101 2ku3_A Bromodomain-containing 72.7 3.2 0.00011 26.6 3.1 50 131-180 12-65 (71)
102 2e6s_A E3 ubiquitin-protein li 71.9 0.71 2.4E-05 30.3 -0.2 45 136-180 27-76 (77)
103 2yt5_A Metal-response element- 71.5 1.3 4.4E-05 27.8 1.0 51 132-182 3-62 (66)
104 1wep_A PHF8; structural genomi 71.3 2.5 8.5E-05 27.6 2.4 49 133-182 10-64 (79)
105 1weu_A Inhibitor of growth fam 70.4 1.9 6.6E-05 29.2 1.7 46 133-182 34-86 (91)
106 1wen_A Inhibitor of growth fam 70.0 2 6.8E-05 27.6 1.6 46 133-182 14-66 (71)
107 3asl_A E3 ubiquitin-protein li 69.0 0.67 2.3E-05 29.8 -0.8 44 137-180 20-68 (70)
108 1wem_A Death associated transc 68.7 1.4 4.9E-05 28.5 0.7 47 134-181 15-70 (76)
109 3v43_A Histone acetyltransfera 66.4 1.5 5.2E-05 30.6 0.5 44 137-180 63-111 (112)
110 2cs3_A Protein C14ORF4, MY039 66.1 1.4 4.9E-05 29.2 0.3 36 133-171 13-52 (93)
111 2ro1_A Transcription intermedi 65.9 1 3.5E-05 34.7 -0.5 45 135-182 2-50 (189)
112 4gne_A Histone-lysine N-methyl 65.1 2.4 8.2E-05 29.6 1.4 44 131-179 11-60 (107)
113 3shb_A E3 ubiquitin-protein li 62.2 0.9 3.1E-05 29.9 -1.2 43 138-180 29-76 (77)
114 3ask_A E3 ubiquitin-protein li 61.3 1.8 6.1E-05 34.4 0.1 46 135-180 174-224 (226)
115 3o70_A PHD finger protein 13; 61.1 1.4 4.6E-05 28.2 -0.5 48 132-180 16-66 (68)
116 3mjh_B Early endosome antigen 57.4 2.5 8.5E-05 23.3 0.2 12 134-145 4-15 (34)
117 1wyh_A SLIM 2, skeletal muscle 55.3 8.5 0.00029 23.8 2.6 42 135-185 5-46 (72)
118 1wfk_A Zinc finger, FYVE domai 55.1 7.7 0.00026 25.9 2.5 52 132-183 6-65 (88)
119 2kgg_A Histone demethylase jar 55.1 4 0.00014 24.3 0.9 43 137-179 4-52 (52)
120 1weo_A Cellulose synthase, cat 54.9 30 0.001 23.2 5.3 51 134-184 15-70 (93)
121 2ri7_A Nucleosome-remodeling f 54.5 2.7 9.1E-05 31.5 0.0 48 133-181 6-59 (174)
122 2d8v_A Zinc finger FYVE domain 53.9 7.7 0.00026 24.6 2.1 34 131-168 4-38 (67)
123 1z2q_A LM5-1; membrane protein 53.8 8.5 0.00029 25.3 2.5 36 133-168 19-55 (84)
124 2vnf_A ING 4, P29ING4, inhibit 53.2 2.1 7.2E-05 26.5 -0.6 43 134-180 9-58 (60)
125 2xb1_A Pygopus homolog 2, B-ce 52.8 7.5 0.00026 26.8 2.2 48 135-182 3-62 (105)
126 1x63_A Skeletal muscle LIM-pro 51.6 11 0.00038 24.0 2.8 42 135-185 15-56 (82)
127 3a1b_A DNA (cytosine-5)-methyl 51.3 9.5 0.00033 28.5 2.6 48 130-180 74-133 (159)
128 2dar_A PDZ and LIM domain prot 51.2 12 0.0004 24.5 2.9 42 133-185 23-64 (90)
129 2ysm_A Myeloid/lymphoid or mix 51.1 1.8 6.1E-05 30.1 -1.3 44 137-180 56-103 (111)
130 3c6w_A P28ING5, inhibitor of g 50.7 2.5 8.7E-05 26.0 -0.5 43 134-180 8-57 (59)
131 2pv0_B DNA (cytosine-5)-methyl 50.3 12 0.00043 31.9 3.5 49 130-181 88-148 (386)
132 1x4k_A Skeletal muscle LIM-pro 50.3 9.6 0.00033 23.6 2.2 41 136-185 6-46 (72)
133 1vfy_A Phosphatidylinositol-3- 50.0 9.8 0.00033 24.2 2.3 32 135-166 11-43 (73)
134 2yw8_A RUN and FYVE domain-con 49.8 8.9 0.00031 25.0 2.1 36 133-168 17-53 (82)
135 1m3v_A FLIN4, fusion of the LI 49.5 19 0.00063 25.0 3.9 53 134-187 31-84 (122)
136 1y02_A CARP2, FYVE-ring finger 49.3 1.4 4.8E-05 31.5 -2.2 47 134-180 18-65 (120)
137 1x4u_A Zinc finger, FYVE domai 49.2 9 0.00031 25.1 2.0 35 133-167 12-47 (84)
138 1joc_A EEA1, early endosomal a 48.8 9.3 0.00032 27.2 2.2 34 134-167 68-102 (125)
139 1x61_A Thyroid receptor intera 48.8 13 0.00043 23.0 2.7 39 136-183 6-44 (72)
140 2o35_A Hypothetical protein DU 48.6 7.1 0.00024 26.8 1.4 12 159-170 42-53 (105)
141 3fyb_A Protein of unknown func 48.1 7.4 0.00025 26.7 1.4 12 159-170 41-52 (104)
142 3t7l_A Zinc finger FYVE domain 47.7 9 0.00031 25.6 1.9 36 134-169 19-55 (90)
143 1x4l_A Skeletal muscle LIM-pro 47.7 14 0.00049 22.8 2.8 41 135-184 5-47 (72)
144 1x62_A C-terminal LIM domain p 47.1 7.8 0.00027 24.7 1.4 40 134-184 14-53 (79)
145 1wev_A Riken cDNA 1110020M19; 46.7 4.2 0.00014 27.2 0.0 51 133-183 14-74 (88)
146 1iml_A CRIP, cysteine rich int 46.6 4.2 0.00014 25.8 0.0 43 134-180 26-69 (76)
147 2dj7_A Actin-binding LIM prote 45.6 10 0.00035 24.3 1.9 40 134-183 14-53 (80)
148 2kwj_A Zinc finger protein DPF 45.0 1.4 4.9E-05 30.9 -2.7 46 137-182 60-109 (114)
149 1wig_A KIAA1808 protein; LIM d 43.5 11 0.00037 23.7 1.7 37 136-183 6-42 (73)
150 1zbd_B Rabphilin-3A; G protein 42.7 7.1 0.00024 28.3 0.7 48 133-180 53-106 (134)
151 1g47_A Pinch protein; LIM doma 42.4 12 0.0004 23.5 1.7 43 134-185 10-52 (77)
152 1x68_A FHL5 protein; four-and- 42.4 14 0.00047 23.2 2.1 41 135-184 5-47 (76)
153 2l3k_A Rhombotin-2, linker, LI 42.2 13 0.00044 25.9 2.1 36 134-170 35-70 (123)
154 1x64_A Alpha-actinin-2 associa 42.2 12 0.0004 24.4 1.8 41 134-185 24-64 (89)
155 2zet_C Melanophilin; complex, 41.4 13 0.00046 27.4 2.1 47 133-180 66-116 (153)
156 2cu8_A Cysteine-rich protein 2 41.3 6.8 0.00023 24.7 0.4 42 134-185 8-49 (76)
157 1dvp_A HRS, hepatocyte growth 40.7 12 0.0004 29.1 1.8 34 134-167 160-194 (220)
158 2l4z_A DNA endonuclease RBBP8, 40.6 10 0.00035 26.7 1.3 40 134-183 60-99 (123)
159 3f6q_B LIM and senescent cell 40.1 9.7 0.00033 23.3 1.0 43 134-185 10-52 (72)
160 2d8z_A Four and A half LIM dom 40.0 22 0.00076 21.7 2.8 38 136-184 6-43 (70)
161 1v6g_A Actin binding LIM prote 39.9 10 0.00035 24.1 1.2 40 136-186 16-55 (81)
162 2co8_A NEDD9 interacting prote 39.1 20 0.0007 22.9 2.5 43 134-186 14-56 (82)
163 1nyp_A Pinch protein; LIM doma 38.3 16 0.00054 22.1 1.8 39 135-184 5-43 (66)
164 2g6q_A Inhibitor of growth pro 38.2 5.2 0.00018 24.9 -0.5 43 134-180 10-59 (62)
165 2d8x_A Protein pinch; LIM doma 37.9 9.7 0.00033 23.5 0.8 40 135-185 5-44 (70)
166 3zyq_A Hepatocyte growth facto 36.8 13 0.00044 29.1 1.5 35 134-168 163-198 (226)
167 1wew_A DNA-binding family prot 36.0 28 0.00096 22.3 2.8 48 133-181 14-72 (78)
168 2gmg_A Hypothetical protein PF 35.4 9.9 0.00034 26.4 0.5 30 152-186 69-98 (105)
169 1x6a_A LIMK-2, LIM domain kina 34.8 19 0.00065 22.8 1.8 38 136-184 16-53 (81)
170 2ehe_A Four and A half LIM dom 34.8 21 0.0007 22.6 2.0 41 136-185 16-56 (82)
171 1q2j_A MU-conotoxin SMIIIA; HE 34.1 16 0.00054 18.4 1.0 10 2-11 1-15 (26)
172 2cor_A Pinch protein; LIM doma 34.1 16 0.00055 23.2 1.4 41 134-185 14-54 (79)
173 2d8y_A Eplin protein; LIM doma 32.9 16 0.00054 23.9 1.2 41 135-185 15-55 (91)
174 2xjy_A Rhombotin-2; oncoprotei 32.9 42 0.0014 23.2 3.6 49 134-183 28-77 (131)
175 2cuq_A Four and A half LIM dom 32.9 21 0.00073 22.4 1.8 39 136-185 16-54 (80)
176 1wd2_A Ariadne-1 protein homol 32.7 5.3 0.00018 24.7 -1.1 37 135-171 6-47 (60)
177 2a20_A Regulating synaptic mem 31.7 2.4 8.3E-05 26.3 -2.8 48 133-180 7-59 (62)
178 2cur_A Skeletal muscle LIM-pro 31.6 21 0.00072 21.8 1.6 39 135-184 5-43 (69)
179 1a7i_A QCRP2 (LIM1); LIM domai 30.5 8.3 0.00029 24.6 -0.5 41 135-185 7-47 (81)
180 3o7a_A PHD finger protein 13 v 29.3 6.9 0.00024 23.2 -1.0 41 140-180 8-51 (52)
181 3mpx_A FYVE, rhogef and PH dom 29.2 12 0.00039 31.9 0.0 50 133-182 373-430 (434)
182 2xqn_T Testin, TESS; metal-bin 28.9 59 0.002 22.2 3.8 47 134-184 29-75 (126)
183 2jmo_A Parkin; IBR, E3 ligase, 28.9 3.5 0.00012 27.0 -2.6 20 155-176 55-74 (80)
184 1j2o_A FLIN2, fusion of rhombo 28.8 26 0.0009 23.9 1.8 38 133-171 28-66 (114)
185 2egq_A FHL1 protein; LIM domai 28.2 17 0.00058 22.7 0.7 41 136-185 16-59 (77)
186 2cup_A Skeletal muscle LIM-pro 28.1 38 0.0013 22.2 2.5 48 134-185 32-79 (101)
187 2pk7_A Uncharacterized protein 27.7 15 0.00051 23.4 0.3 13 171-183 7-19 (69)
188 2dlo_A Thyroid receptor-intera 27.4 14 0.00049 23.4 0.2 39 135-184 15-53 (81)
189 1x3h_A Leupaxin; paxillin fami 26.1 24 0.00082 22.1 1.2 39 136-185 16-54 (80)
190 2iyb_E Testin, TESS, TES; LIM 24.6 28 0.00097 21.0 1.2 40 137-185 4-45 (65)
191 2lq6_A Bromodomain-containing 24.4 35 0.0012 22.5 1.7 35 133-167 15-50 (87)
192 2rgt_A Fusion of LIM/homeobox 23.5 40 0.0014 24.7 2.1 37 135-171 93-129 (169)
193 2jvx_A NF-kappa-B essential mo 22.7 18 0.00063 18.8 0.0 12 173-184 4-15 (28)
194 2jny_A Uncharacterized BCR; st 22.5 14 0.00047 23.4 -0.6 13 174-186 30-42 (67)
195 3vhs_A ATPase wrnip1; zinc fin 21.6 24 0.00083 17.9 0.4 11 174-184 8-18 (29)
196 2ct7_A Ring finger protein 31; 21.2 10 0.00036 24.9 -1.4 41 138-178 28-73 (86)
197 1wee_A PHD finger family prote 20.8 26 0.0009 22.0 0.5 47 133-180 14-65 (72)
198 2jtn_A LIM domain-binding prot 20.3 44 0.0015 24.7 1.8 49 133-186 85-133 (182)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=6.3e-16 Score=104.77 Aligned_cols=61 Identities=30% Similarity=0.674 Sum_probs=52.1
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeeccC
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVATD 192 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~~~ 192 (201)
...+..|+||++.|.....+..++|+|.||..||.+|++.+.+||+||+.+..........
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 72 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPP 72 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCC
Confidence 3567789999999977677778999999999999999999999999999998877655443
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=7.9e-16 Score=97.32 Aligned_cols=51 Identities=27% Similarity=0.765 Sum_probs=44.7
Q ss_pred CCcccccccccccCCCCCeEEcC-CCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
+++..|+||++.+..++....++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46678999999997766667676 9999999999999999999999999874
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=103.09 Aligned_cols=53 Identities=26% Similarity=0.793 Sum_probs=47.2
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
..++..|+||++.|...+.++.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45677899999999777777889999999999999999999999999998764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=101.38 Aligned_cols=54 Identities=28% Similarity=0.799 Sum_probs=47.4
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
.++..|+||++.|.....+..++|+|.||..||.+|++...+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 456789999999977777777899999999999999999999999999886543
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.57 E-value=9.7e-16 Score=107.19 Aligned_cols=53 Identities=32% Similarity=0.696 Sum_probs=47.0
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
.+++..|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 35677899999999777777889999999999999999999999999998753
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=100.05 Aligned_cols=54 Identities=30% Similarity=0.694 Sum_probs=47.6
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
.+.+..|+||++.|.....++.++|+|.||..||.+|++...+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 356678999999997767778899999999999999999999999999988654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.2e-15 Score=101.76 Aligned_cols=54 Identities=35% Similarity=0.766 Sum_probs=43.1
Q ss_pred CCcccccccccccCC-----------CC-CeEEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 133 EEEDTCPICLEEYDT-----------EN-PKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 133 ~~~~~C~ICle~~~~-----------~~-~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
.+++.|+||++.|.. .+ .+++++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 456678888888833 22 3355569999999999999999999999999987654
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=98.56 Aligned_cols=57 Identities=26% Similarity=0.410 Sum_probs=48.5
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeec
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~ 190 (201)
.+++..|+||++.+ .+++.+++|+|.||..||.+|++.+..||+||+.+...++..+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 35677899999999 5676656999999999999999988999999999987765544
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.54 E-value=3.6e-15 Score=107.25 Aligned_cols=68 Identities=26% Similarity=0.538 Sum_probs=51.5
Q ss_pred CCcchhhhcccc---ccCCCcccccccccccCCC---------------CCeEEcCCCCcccHHHHHHHHhcCCCCcccc
Q 028970 118 PRKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (201)
Q Consensus 118 ~~~~~~~k~~~~---~~~~~~~~C~ICle~~~~~---------------~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr 179 (201)
.++..+++.... ....+++.|+||++.|... ..+++++|+|.||..||.+||..+.+||+||
T Consensus 17 ~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 96 (106)
T 3dpl_R 17 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96 (106)
T ss_dssp CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSC
T ss_pred cCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCC
Confidence 344455554433 3345678899999999532 1357789999999999999999999999999
Q ss_pred cccccc
Q 028970 180 QDAVFR 185 (201)
Q Consensus 180 ~~~~~~ 185 (201)
+.+.+.
T Consensus 97 ~~~~~~ 102 (106)
T 3dpl_R 97 REWEFQ 102 (106)
T ss_dssp SBCCEE
T ss_pred Ccceee
Confidence 987543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.51 E-value=9e-15 Score=92.31 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=43.6
Q ss_pred CCcccccccccccCC-CCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
..+..|+||++.+.. .+.++.++|+|.||..||.+|+....+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356679999999943 345688999999999999999999899999998764
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.51 E-value=6.7e-15 Score=97.67 Aligned_cols=57 Identities=23% Similarity=0.589 Sum_probs=47.8
Q ss_pred CCcccccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~ 189 (201)
+++..|+||++.+.. ...++.++|||.||..||.+|++.+.+||+||+.+...+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 567789999999833 244478999999999999999999999999999988766543
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=2.3e-14 Score=103.80 Aligned_cols=53 Identities=34% Similarity=0.689 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCC---------------CeEEcCCCCcccHHHHHHHH-----hcCCCCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTEN---------------PKLITKCEHHFHLSCILEWN-----ERSESCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~---------------~~~~~~C~H~Fh~~CI~~Wl-----~~~~~CP~Cr~~~~~~ 185 (201)
..++.|+||++.|.... .+.+++|+|.||..||.+|+ ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34568999999994421 33479999999999999999 4567999999987654
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.48 E-value=2.1e-14 Score=94.61 Aligned_cols=50 Identities=32% Similarity=0.792 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
+.+..|+||++.+ .++.+.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4566899999999 5666889999999999999999999999999998864
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=96.68 Aligned_cols=54 Identities=24% Similarity=0.530 Sum_probs=45.8
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccccee
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVI 188 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~ 188 (201)
..++..|+||++.+ .++ +.++|+|.||..||.+|+.....||+||+.+..+.+.
T Consensus 12 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBC--SSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCCccCCccc--CCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 35667899999999 444 6689999999999999999999999999998765543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=93.66 Aligned_cols=57 Identities=23% Similarity=0.576 Sum_probs=47.5
Q ss_pred CcccccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeec
Q 028970 134 EEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 134 ~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~ 190 (201)
++..|+||++.+.. ...++.++|||.||..||.+|++.+.+||+||+.+...+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 45679999999933 2344779999999999999999999999999999987766543
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.7e-14 Score=94.06 Aligned_cols=52 Identities=25% Similarity=0.672 Sum_probs=43.9
Q ss_pred CCcccccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
.+...|+||++.|.. ...+++++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 567789999999933 2334779999999999999999999999999998753
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2e-14 Score=95.32 Aligned_cols=54 Identities=31% Similarity=0.759 Sum_probs=45.8
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeec
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~ 190 (201)
.+...|+||++.+. + +.++|+|.||..||.+|+....+||+||+.+...+....
T Consensus 13 ~~~~~C~IC~~~~~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCC--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCcc--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 46678999999993 3 679999999999999999999999999999886654433
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.45 E-value=6.4e-15 Score=107.56 Aligned_cols=68 Identities=26% Similarity=0.538 Sum_probs=9.3
Q ss_pred CCcchhhhcccc---ccCCCcccccccccccCCC---------------CCeEEcCCCCcccHHHHHHHHhcCCCCcccc
Q 028970 118 PRKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (201)
Q Consensus 118 ~~~~~~~k~~~~---~~~~~~~~C~ICle~~~~~---------------~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr 179 (201)
.++.++++.... ....+++.|+||++.|... ..++.++|+|.||..||.+||+.+.+||+||
T Consensus 28 ~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr 107 (117)
T 4a0k_B 28 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107 (117)
T ss_dssp CCSEEEEEEEEEEEEEECCCC-----------------------------------------------------------
T ss_pred CCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCC
Confidence 344555555444 4445678899999999431 1334579999999999999999999999999
Q ss_pred cccccc
Q 028970 180 QDAVFR 185 (201)
Q Consensus 180 ~~~~~~ 185 (201)
+.+.+.
T Consensus 108 ~~~~~~ 113 (117)
T 4a0k_B 108 REWEFQ 113 (117)
T ss_dssp ------
T ss_pred Ceeeee
Confidence 987654
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=95.58 Aligned_cols=59 Identities=24% Similarity=0.522 Sum_probs=47.2
Q ss_pred CCCcccccccccccCCCCC-eEEcCCCCcccHHHHHHHHhcC---CCCccccccccccceeec
Q 028970 132 SEEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNERS---ESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~~---~~CP~Cr~~~~~~~~~~~ 190 (201)
..+...|+||++.|...+. .+.++|||.||..||.+|++.. ..||+||+.+...++..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 3567789999999954332 5778999999999999999876 799999999877654333
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.1e-14 Score=95.80 Aligned_cols=56 Identities=32% Similarity=0.759 Sum_probs=46.8
Q ss_pred cCCCcccccccccccCCCCCeEEcCCC-----CcccHHHHHHHHhcC--CCCccccccccccce
Q 028970 131 ASEEEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERS--ESCPICDQDAVFRYV 187 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~--~~CP~Cr~~~~~~~~ 187 (201)
...+++.|.||+++|+.++.+ ++||. |.||..||.+|+..+ .+||+||+.+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 445677899999999777774 68996 999999999999875 499999999987653
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.43 E-value=8.2e-14 Score=93.53 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=44.8
Q ss_pred CCCcccccccccccCCCCCeEEcC-CCCcccHHHHHHHHhcC--CCCccccccccccceee
Q 028970 132 SEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQDAVFRYVIV 189 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~--~~CP~Cr~~~~~~~~~~ 189 (201)
..++..|+||++.| .++ +.++ |+|.||..||.+|+..+ ..||+||+.+...+.++
T Consensus 12 ~~~~~~C~IC~~~~--~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2yur_A 12 IPDELLCLICKDIM--TDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALS 69 (74)
T ss_dssp SCGGGSCSSSCCCC--TTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTT
T ss_pred CCCCCCCcCCChHH--hCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccc
Confidence 35677899999999 566 5588 99999999999999865 69999999876555443
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=91.09 Aligned_cols=52 Identities=35% Similarity=0.760 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh---cCCCCccccccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPICDQDAVFRY 186 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~~CP~Cr~~~~~~~ 186 (201)
..++..|+||++.+ .++ +.++|||.||..||.+|++ ....||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBC--SSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCccc--CCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 35677899999999 444 6679999999999999997 4559999999987654
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=6.1e-14 Score=99.60 Aligned_cols=56 Identities=27% Similarity=0.636 Sum_probs=46.8
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCccccccccccceeec
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~~~~~ 190 (201)
.++..|+||++.| .+++..++|||.||..||.+|+... ..||+||+.+..+++...
T Consensus 20 ~~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh
Confidence 4667899999999 5564449999999999999999987 699999999977665443
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=89.83 Aligned_cols=51 Identities=27% Similarity=0.520 Sum_probs=43.3
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh-cCCCCccccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQDAVFRY 186 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~~CP~Cr~~~~~~~ 186 (201)
.++..|+||++.+ .++ +.++|||.||..||.+|+. ....||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVL--CSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEE--SSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHh--cCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4677899999999 555 4489999999999999994 5679999999987665
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=92.81 Aligned_cols=48 Identities=42% Similarity=0.770 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
+....|+||++.+ .++ ++++|+|.||..||.+|++....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh--cCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4667899999999 555 56999999999999999999999999999875
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=4e-13 Score=91.71 Aligned_cols=57 Identities=35% Similarity=0.699 Sum_probs=47.3
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc------CCCCccccccccccceeeccC
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQDAVFRYVIVATD 192 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~------~~~CP~Cr~~~~~~~~~~~~~ 192 (201)
.++..|+||++.+ .++ +.++|+|.||..||..|+.. ...||+||+.+..+++.....
T Consensus 17 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CTTTSCTTTCSCC--SSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred ccCCCCcCCChhh--Ccc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 4667899999999 555 56899999999999999987 679999999998776554433
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=1.2e-13 Score=103.52 Aligned_cols=50 Identities=38% Similarity=0.800 Sum_probs=43.6
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
+++..|+||++.| .++ +.++|||.||..||..|+..+.+||+||+.+...
T Consensus 51 ~~~~~C~iC~~~~--~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYF--IEA-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBC--SSE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCccc--CCc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4566899999999 455 6689999999999999999999999999988644
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=4.4e-13 Score=90.57 Aligned_cols=54 Identities=24% Similarity=0.495 Sum_probs=45.8
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~~~~ 189 (201)
.++..|+||++.+ .++ +.++|||.||..||.+|+.. ..+||+||+.+....+..
T Consensus 6 ~~~~~C~IC~~~~--~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCC--SSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccc--cCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 4677899999999 555 55899999999999999987 779999999987665443
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=96.64 Aligned_cols=53 Identities=23% Similarity=0.560 Sum_probs=44.9
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccce
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYV 187 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~ 187 (201)
.++..|+||++.| .+++.+++|||.||..||.+|+.....||+||+.+...++
T Consensus 20 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 20 DDLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 3566899999999 5565545999999999999999998999999998876543
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-13 Score=92.82 Aligned_cols=54 Identities=39% Similarity=0.772 Sum_probs=45.2
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-------CCCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-------SESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-------~~~CP~Cr~~~~~~~~~~ 189 (201)
+++..|+||++.| .++ +.++|||.||..||.+|+.. ...||+||+.+...++..
T Consensus 10 ~~~~~C~IC~~~~--~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELL--TEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEEC--SSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCccc--CCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 5677899999999 455 45899999999999999986 669999999988765443
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.6e-13 Score=91.00 Aligned_cols=55 Identities=35% Similarity=0.715 Sum_probs=46.0
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc------CCCCccccccccccceeec
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~------~~~CP~Cr~~~~~~~~~~~ 190 (201)
.+...|+||++.+ .++ +.++|+|.||..||..|+.. ...||+||+.+..+++...
T Consensus 17 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCTTTCSCC--SSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred cCCCCCCCCCccc--CCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 4667899999999 455 55899999999999999987 7799999999987665443
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=6.9e-13 Score=97.81 Aligned_cols=61 Identities=21% Similarity=0.507 Sum_probs=50.1
Q ss_pred CCcccccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeeccCC
Q 028970 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVATDH 193 (201)
Q Consensus 133 ~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~~~~ 193 (201)
.++..|+||++.|.. +..++.++|||.||..||.+|++.+.+||+||+.+.......+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 456789999999932 2334779999999999999999999999999999988776555444
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=1.2e-12 Score=85.43 Aligned_cols=56 Identities=23% Similarity=0.499 Sum_probs=43.5
Q ss_pred Cccccccccc-ccCCC-CCeEEcCCCCcccHHHHHHHHhc-CCCCccccccccccceee
Q 028970 134 EEDTCPICLE-EYDTE-NPKLITKCEHHFHLSCILEWNER-SESCPICDQDAVFRYVIV 189 (201)
Q Consensus 134 ~~~~C~ICle-~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~~~~ 189 (201)
++..|+||++ .+... ...++++|||.||..||.+|+.+ ...||+||+.+...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 4567999999 77322 23356899999999999999764 468999999998766543
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.33 E-value=6.9e-13 Score=95.24 Aligned_cols=51 Identities=29% Similarity=0.636 Sum_probs=44.7
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
.++..|+||++.+ .+++.+++|||.||..||..|+.....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4677899999999 56655559999999999999999999999999998764
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=83.83 Aligned_cols=44 Identities=41% Similarity=0.944 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh---cCCCCccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~~CP~C 178 (201)
.+++..|+||++.+ .++ +.++|||.||..||.+|++ ....||+|
T Consensus 17 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBC--SSC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchh--CCe-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35677899999999 555 5579999999999999998 45699998
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=90.36 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCCCeEEcC-CCCcccHHHHHHHHhcC--CCCcccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQDAV 183 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~--~~CP~Cr~~~~ 183 (201)
..++..|+||++.| .++ +.++ |||.||..||..|+... ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~--~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIM--TDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEEC--SSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhh--cCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35678899999999 566 5578 99999999999999754 59999999973
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=95.25 Aligned_cols=49 Identities=31% Similarity=0.504 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~ 184 (201)
.++..|+||++.| .++ +.++|||.||..||..|+.... .||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV--FRP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHH--cCc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4667899999999 455 6689999999999999998544 99999999876
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.27 E-value=4.7e-12 Score=85.97 Aligned_cols=63 Identities=16% Similarity=0.371 Sum_probs=47.5
Q ss_pred CCCcccccccccccCCCCCeEEc--CCCCcccHHHHHHHHh-cCCCCccccccccccceeeccCCCc
Q 028970 132 SEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNE-RSESCPICDQDAVFRYVIVATDHSK 195 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~-~~~~CP~Cr~~~~~~~~~~~~~~~~ 195 (201)
.+++..|+||++.+...+. ..+ +|||.||..||.+|+. ....||+||+.+........+.+.+
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~ 73 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQE 73 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCHH
Confidence 3567789999999854444 334 4999999999999985 3569999999998776655444443
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=1.9e-12 Score=99.65 Aligned_cols=50 Identities=32% Similarity=0.717 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~ 184 (201)
.++..|+||++.| .+++.+++|||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4566899999999 566565699999999999999987 7799999998854
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=4.1e-12 Score=93.60 Aligned_cols=60 Identities=22% Similarity=0.553 Sum_probs=50.0
Q ss_pred cCCCcccccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeec
Q 028970 131 ASEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~ 190 (201)
..++...|+||++.+.. ....+.++|||.||..||.+|++.+++||+||+.+..+++..+
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 34677789999999832 2334779999999999999999999999999999988876554
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=81.02 Aligned_cols=43 Identities=42% Similarity=1.076 Sum_probs=36.2
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh---cCCCCccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~~CP~C 178 (201)
.++..|+||++.+ .++ ++++|+|.||..||.+|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBC--SSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCccc--Ccc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4667899999999 445 5589999999999999954 56799998
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=5.2e-12 Score=87.08 Aligned_cols=54 Identities=17% Similarity=0.036 Sum_probs=46.9
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~ 189 (201)
.++..|+||++.+ .++ ++++|||.|+..||.+|+....+||+||+.+....+..
T Consensus 12 p~~~~CpI~~~~m--~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchh--cCC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 4678899999999 666 56889999999999999998889999999988766543
No 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=82.85 Aligned_cols=52 Identities=19% Similarity=0.496 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC--CCCccccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPICDQDAVFRY 186 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~--~~CP~Cr~~~~~~~ 186 (201)
+....|.||++.+..+ ..-..|+|.||..||.+||+.+ .+||+||+.+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 4566799999999543 2334899999999999999887 79999999887654
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.22 E-value=6.2e-12 Score=91.67 Aligned_cols=54 Identities=26% Similarity=0.575 Sum_probs=45.2
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCcccccccccccee
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQDAVFRYVI 188 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~~~~~ 188 (201)
.+++..|+||++.+ .++ +.++|||.||..||.+|+.... +||+||+.+..+++.
T Consensus 15 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 15 LESKYECPICLMAL--REA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (118)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCcCChhh--cCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc
Confidence 35677899999999 455 6689999999999999998765 999999998776543
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=4.3e-12 Score=91.26 Aligned_cols=53 Identities=36% Similarity=0.772 Sum_probs=43.8
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC---CCccccccccccceee
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE---SCPICDQDAVFRYVIV 189 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~---~CP~Cr~~~~~~~~~~ 189 (201)
+...|+||++.+ .++ +.++|||.||..||..|+.... .||+||+.+....+..
T Consensus 20 ~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELI--KEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCC--SSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhh--cCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 456799999999 555 4589999999999999998654 8999999988765443
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.21 E-value=1e-11 Score=87.92 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=47.2
Q ss_pred CCcccccccccccCCCCCeEEcCCC-CcccHHHHHHHHhcCCCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~-H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~ 189 (201)
.++..|+||++.+ .++ ++++|| |.|+..||.+|+....+||+||+.+..+.+..
T Consensus 20 p~~~~CpI~~~~m--~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBC--SSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccc--cCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 4678899999999 666 568999 99999999999998889999999998766544
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.20 E-value=8.9e-12 Score=88.51 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=47.0
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~ 189 (201)
.++..|+||++.+ .++ ++++|||.|+..||.+|+....+||+||+.+....+..
T Consensus 27 p~~~~CpI~~~~m--~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBC--SSE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcc--cCC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceE
Confidence 5678899999999 677 55889999999999999998889999999988766544
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=7.6e-12 Score=95.15 Aligned_cols=50 Identities=28% Similarity=0.517 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~~ 185 (201)
.+...|+||++.| .++ +.++|||.||..||.+|+.... .||+||+.+..+
T Consensus 76 ~~~~~C~IC~~~~--~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELV--YQP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhh--cCC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4567899999999 555 5599999999999999998754 899999998876
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=1.1e-11 Score=89.90 Aligned_cols=52 Identities=27% Similarity=0.537 Sum_probs=44.2
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCcccccccccccee
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQDAVFRYVI 188 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~~~ 188 (201)
++..|+||++.+ .++ +.++|||.||..||.+|+.. ..+||+||+.+...++.
T Consensus 22 ~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHIL--ADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHh--cCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 566899999999 555 55899999999999999987 67999999998776543
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=3.2e-12 Score=92.69 Aligned_cols=49 Identities=29% Similarity=0.612 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~ 184 (201)
.++..|+||++.+ .++ +.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc--Cce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4667899999999 556 55799999999999999976 6699999998864
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.12 E-value=2.7e-11 Score=79.01 Aligned_cols=49 Identities=27% Similarity=0.585 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCCCeEEc--CCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLIT--KCEHH-FHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~--~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
.++..|.||++.+ .+. +++ +|||. ||..|+.+|++....||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~--~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSC--SCE-EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCC--CCE-EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4566799999998 444 444 99999 8999999999988999999998853
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=9e-12 Score=90.70 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
.++..|+||++.| .+++.+.+|||.||..||..|+. ..||+||+.+...+
T Consensus 20 ~~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 4667899999999 66655349999999999999998 78999999986544
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.10 E-value=3e-11 Score=90.93 Aligned_cols=50 Identities=18% Similarity=0.592 Sum_probs=42.5
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~~ 185 (201)
+++..|+||++.+ .++ +.++|||.||..||.+|+.... .||+||+.+...
T Consensus 29 ~~~~~C~IC~~~~--~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhh--cCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 5777899999999 555 5589999999999999998665 999999986543
No 54
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=9e-11 Score=82.27 Aligned_cols=54 Identities=28% Similarity=0.489 Sum_probs=43.3
Q ss_pred CCcccccccccccCCCCCeEEc-CCCCcccHHHHHHHHhcC------CCCcc--cccc-ccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLIT-KCEHHFHLSCILEWNERS------ESCPI--CDQD-AVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~-~C~H~Fh~~CI~~Wl~~~------~~CP~--Cr~~-~~~~~~~~ 189 (201)
.++..|+||++.| .++++ + .|||.|+..||.+||... .+||+ |++. +...++..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchh--cCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 5678899999999 67755 6 599999999999999764 49999 9877 65555443
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.06 E-value=6.9e-11 Score=76.82 Aligned_cols=50 Identities=18% Similarity=0.495 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCCCeE-EcCCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKL-ITKCEHH-FHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~-~~~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
+.+..|.||++.. .+.++ .+||||. ||..|+.+|++....||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 4566799999987 44422 2499998 9999999999888899999998853
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.05 E-value=1.3e-10 Score=100.41 Aligned_cols=53 Identities=30% Similarity=0.646 Sum_probs=44.8
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh-cCCCCccccccccccceee
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQDAVFRYVIV 189 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~~CP~Cr~~~~~~~~~~ 189 (201)
....|+||++.+ .+ .+.++|||.||..||..|+. ...+||+||+.+.....+.
T Consensus 331 ~~~~C~ICle~~--~~-pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 331 TFQLCKICAEND--KD-VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SSSBCTTTSSSB--CC-EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCCCccCcCC--CC-eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 346899999998 44 47799999999999999998 7889999999988765443
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=3.8e-11 Score=80.47 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=38.5
Q ss_pred CcccccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
++..|+||++.+ .+ .+.++|||. ||..|+..| ..||+||+.+...
T Consensus 23 ~~~~C~iC~~~~--~~-~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRN--IA-IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSB--CC-EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCC--CC-EEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 556799999998 44 467899999 999999998 7999999988654
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=3.4e-11 Score=76.36 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
..++..|+||++.| .++ +.++|+|.||..||..| ...||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~--~~p-~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEA--KCP-KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSC--BCC-SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCcc--CCe-EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 35677899999999 455 66999999999999884 56899999987654
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=87.72 Aligned_cols=55 Identities=25% Similarity=0.574 Sum_probs=45.4
Q ss_pred cCCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCcccccccccccee
Q 028970 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQDAVFRYVI 188 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~~~ 188 (201)
..+++..|+||++.+ .++ +.++|||.||..||.+|+... .+||+||..+..+++.
T Consensus 14 ~~~~~~~C~IC~~~~--~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCCCCChhh--cCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhh
Confidence 335777899999999 555 558999999999999999764 4999999998776543
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=2.6e-10 Score=93.82 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=45.3
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCccccccccccceee
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQDAVFRYVIV 189 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~~~~ 189 (201)
.....|+||++.+ .+| ++++|||.||..||.+|+... .+||+||..+....+..
T Consensus 206 ~~~~~c~i~~~~~--~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELM--REP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBC--SSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHh--cCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 4678899999999 677 568999999999999999864 45999999997666443
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.88 E-value=1.1e-09 Score=85.39 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=46.5
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCccccccccccceeec
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQDAVFRYVIVA 190 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~~~~~ 190 (201)
..+...||||++.+ .+| ++++|||.|+..||..|+... .+||+|+..+....+..+
T Consensus 103 ip~~f~CPI~~elm--~DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 103 IPDYLCGKISFELM--REP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CcHhhcccCccccC--CCC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 35778899999999 666 558999999999999999864 479999999887665443
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.2e-10 Score=75.42 Aligned_cols=45 Identities=27% Similarity=0.662 Sum_probs=36.9
Q ss_pred CcccccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
++..|+||++.+ .++ ++++|||. ||..|+.. ...||+||+.+...
T Consensus 24 ~~~~C~IC~~~~--~~~-~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAI-VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSC--CCB-CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCC--CCE-EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 455799999998 444 66999999 99999964 37899999988654
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.1e-09 Score=89.65 Aligned_cols=57 Identities=32% Similarity=0.591 Sum_probs=48.0
Q ss_pred cCCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC--CCCcc--ccccccccceee
Q 028970 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPI--CDQDAVFRYVIV 189 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~--~~CP~--Cr~~~~~~~~~~ 189 (201)
....+..||||++.| .+|++.+.|||.||..||.+|+... ..||+ |++.+...++..
T Consensus 177 ~~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 177 GGKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SSBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred CCceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 346778899999999 8887767999999999999999864 48999 999887766543
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.84 E-value=1.9e-09 Score=69.37 Aligned_cols=49 Identities=31% Similarity=0.584 Sum_probs=39.4
Q ss_pred CCcccccccccccCCCCCeEEcCCC--C---cccHHHHHHHHhc--CCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCE--H---HFHLSCILEWNER--SESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~--H---~Fh~~CI~~Wl~~--~~~CP~Cr~~~~~ 184 (201)
+++..|.||+++. +++ .++||. + .||..||.+|+.. +.+||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5677899999985 444 458865 4 9999999999974 5699999998764
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=71.05 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
+++..|.||++.. ..++++||+|. ||..|+.. ...||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4567899999997 44578999999 99999984 47999999988654
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.83 E-value=2.1e-09 Score=69.38 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeeccC
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVATD 192 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~~~ 192 (201)
..|+|+++.+ .++++..++||.|...||.+|++.+.+||+.++.+..+++..+..
T Consensus 4 ~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 4 MLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred EEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 5799999999 677553399999999999999998889999999999888766543
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.81 E-value=9.4e-10 Score=74.63 Aligned_cols=46 Identities=28% Similarity=0.557 Sum_probs=38.4
Q ss_pred CcccccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCccccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
++..|+||++.+ ...++++|||. ||..|+..| ..||+||+.+....
T Consensus 17 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 17 EAMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HHTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 455799999998 44577999999 999999887 39999999887653
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.72 E-value=1.9e-09 Score=91.29 Aligned_cols=53 Identities=26% Similarity=0.518 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCCCCe-----EEcCCCCcccHHHHHHHHhcC-----------CCCccccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPK-----LITKCEHHFHLSCILEWNERS-----------ESCPICDQDAVF 184 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-----~~~~C~H~Fh~~CI~~Wl~~~-----------~~CP~Cr~~~~~ 184 (201)
++....|+||++.+.....+ ...+|+|.||..||.+||+.. .+||.||++|..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35667899999999542221 135899999999999999752 479999998763
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=3.1e-09 Score=74.13 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc--------CCCCcc--cccc--cccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--------SESCPI--CDQD--AVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--------~~~CP~--Cr~~--~~~~ 185 (201)
.+...|+||++.+.....+.+++|+|.||..||..|+.. ...||. |+.. +..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 356679999999854444444689999999999999863 238999 9998 5543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.53 E-value=1.2e-08 Score=87.16 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=39.0
Q ss_pred CCcccccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
+++..|+||++.+ .+ .+.++|||. ||..|+..| ..||+||..+...
T Consensus 293 ~~~~~C~IC~~~~--~~-~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKE--VS-VVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSB--CC-EEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcC--Cc-eEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4667899999999 44 466899999 999999988 6899999987643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.32 E-value=4e-07 Score=63.63 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=40.0
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCccccccccccce
Q 028970 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQDAVFRYV 187 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~~ 187 (201)
.|.+|--.+ ....++.||+|.||.+|+..|.++ .++||+|+..+..-+.
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 488887777 445588999999999999999854 6799999998875543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=65.36 Aligned_cols=53 Identities=19% Similarity=0.479 Sum_probs=41.8
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC--CCccccccccccce
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQDAVFRYV 187 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--~CP~Cr~~~~~~~~ 187 (201)
+....|.||.+....+ ..-..|+|.||..|+.+|++.+. .||.|+..+....+
T Consensus 178 ~~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TTCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 3567899999998533 33345999999999999998654 99999998876644
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=43.48 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=26.0
Q ss_pred CcccccccccccCCCCCeEE--cCCCCcccHHHHHHHH
Q 028970 134 EEDTCPICLEEYDTENPKLI--TKCEHHFHLSCILEWN 169 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~--~~C~H~Fh~~CI~~Wl 169 (201)
++..|.||++.+ ..+.+. +.|+|.||..|+..|.
T Consensus 2 ee~~C~~C~~~~--~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDP--AQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSS--CCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCC--CCCceEECCcCChHHhHHHCHHHh
Confidence 456799999864 233344 9999999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.84 E-value=0.0048 Score=42.35 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=41.8
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccceeeccC
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYVIVATD 192 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~~~~ 192 (201)
.-..|-.|+-+. .. .+.-..|.+|..|+...|.++..||+|++++...-.+....
T Consensus 27 G~~nCKsCWf~~---k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~P 81 (99)
T 2ko5_A 27 GPQFCKSCWFEN---KG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAP 81 (99)
T ss_dssp CCCCCCSSCSCC---SS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSC
T ss_pred CcccChhhcccc---CC-eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCC
Confidence 445699999876 33 33334699999999999999999999999987765444433
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.37 E-value=0.055 Score=34.75 Aligned_cols=46 Identities=22% Similarity=0.516 Sum_probs=34.1
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC----CCcccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQD 181 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----~CP~Cr~~ 181 (201)
.....|.||.+. ++.+.--.|...||..|+...|.... .|+.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 355679999864 35545567889999999988876532 89999754
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.26 E-value=0.14 Score=34.33 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHH
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W 168 (201)
..++.|.||-- +..+...----|+..||..|+.+.
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46778999953 322222222347899999999996
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.51 E-value=0.057 Score=35.27 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQDAVF 184 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~~~~ 184 (201)
.+...|.||........-+.--.|..-||..|+..-... .-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 455679999887633233344568899999999754432 3389999876544
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.30 E-value=0.25 Score=47.07 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=46.4
Q ss_pred CCCcccccccccccCCCCCeEEcCCC-CcccHHHHHHHHhcCCCCccccccccccceee
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQDAVFRYVIV 189 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~-H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~~ 189 (201)
.-++..|||-++.+ .+| ++++-| +.|-...|.+|+....+||+=|+++....+.+
T Consensus 888 iP~~F~cPIs~~lM--~DP-VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 888 VPDEFLDPLMYTIM--KDP-VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp SCGGGBCTTTCSBC--SSE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CcHHhCCcchhhHH--hCC-eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 34677899999999 677 558887 68999999999999899999999988766554
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.67 E-value=0.17 Score=31.73 Aligned_cols=46 Identities=26% Similarity=0.692 Sum_probs=32.8
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
...+..|.||... ++.+.--.|...||..|+..-+.. .-.||.|++
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3566789999874 344444568899999999875543 228999965
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.52 E-value=0.098 Score=36.77 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=29.0
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (201)
..+++.|.||.+.-+..+.+.-..|...||..|+..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 457788999988753333345578999999999987664
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.61 E-value=0.26 Score=29.52 Aligned_cols=44 Identities=25% Similarity=0.630 Sum_probs=29.7
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCccccc
Q 028970 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
.|.||...-+..+.+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48889876533444455678899999999653432 227888864
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.60 E-value=0.083 Score=33.22 Aligned_cols=49 Identities=18% Similarity=0.464 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCcccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQDAV 183 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~~~ 183 (201)
...+..|.||.+. ++.+.--.|...||..|+..-+.. .-.||.|+....
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3467779999864 344444568889999999854443 227999976543
No 83
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.48 Score=40.43 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=39.3
Q ss_pred CcccccccccccCCCCCeEEcCCCCc--ccHHHHHHHHhc--CCCCcccccccccccee
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNER--SESCPICDQDAVFRYVI 188 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~--Fh~~CI~~Wl~~--~~~CP~Cr~~~~~~~~~ 188 (201)
-...|||=+..+ ..+++-..|.|. |-..=+.....+ .-.||+|.+.+...++.
T Consensus 248 vSL~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 446799888888 888888999998 666555555443 33999999988666543
No 84
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=87.60 E-value=0.58 Score=39.77 Aligned_cols=53 Identities=28% Similarity=0.570 Sum_probs=40.0
Q ss_pred CcccccccccccCCCCCeEEcCCCCc--ccHHHHHHHHhcC--CCCcccccccccccee
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERS--ESCPICDQDAVFRYVI 188 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~--Fh~~CI~~Wl~~~--~~CP~Cr~~~~~~~~~ 188 (201)
-...|||=+..+ ..+++-..|.|. |-..=+..+..+. -.||+|.+.+..+++.
T Consensus 214 vSL~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 214 VSLMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EESBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred EeeeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 345799888888 788888999998 7766665555443 3999999988766644
No 85
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.62 E-value=0.13 Score=32.49 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=33.3
Q ss_pred CCCcccccccccccCCCC-CeEEcCCCCcccHHHHHHHHh-----cCCCCccccc
Q 028970 132 SEEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNE-----RSESCPICDQ 180 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl~-----~~~~CP~Cr~ 180 (201)
.++...|+||...+.... -+.--.|..-||..|+.--.. ....||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456778999998884333 233356788999999864322 3448999965
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.53 E-value=0.17 Score=38.82 Aligned_cols=48 Identities=27% Similarity=0.491 Sum_probs=34.5
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCcccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQDAV 183 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~~ 183 (201)
..++.|.||... ++-+.--.|...||..|+...+... -.||.|+....
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 356779999865 3544556688999999987665532 28999987543
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.45 E-value=1 Score=33.15 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=35.1
Q ss_pred cCCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh---------c--CCCCcccccc
Q 028970 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---------R--SESCPICDQD 181 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---------~--~~~CP~Cr~~ 181 (201)
....++.|.||.+-- +-+.--.|...||..||.+-+. . .-.|++|+..
T Consensus 59 ~Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345678899998874 5545567889999999997653 1 2289999753
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.29 E-value=0.11 Score=31.99 Aligned_cols=45 Identities=27% Similarity=0.599 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCcccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICD 179 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~~CP~Cr 179 (201)
...++.|.||... ++.+.-..|...||..|+..-+... -.||.|.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4567789999875 3554556788999999997544332 1677774
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.84 E-value=0.19 Score=39.26 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=33.6
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQDA 182 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~ 182 (201)
...++.|.+|...- +-+.--.|...||..|+...+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 35667899998653 333335688999999997766532 2899997643
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.61 E-value=0.63 Score=29.06 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=30.5
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~C 178 (201)
..|--|+..+.......-..|+++||.+|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998322223457899999999954434556699988
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.88 E-value=0.12 Score=32.21 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCcccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQDAV 183 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~~~ 183 (201)
..+..|.||... ++.+.--.|...||..|+..-+.. .-.||.|.....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356789999874 355455678899999999854433 227999866543
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.50 E-value=0.23 Score=31.58 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=32.8
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCcccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQD 181 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~ 181 (201)
..++.|.||.+. ++.+.--.|...||..|+..-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 467789999875 355455678899999999854433 2279999653
No 93
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=80.10 E-value=1.6 Score=27.60 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCCCeE-Ec-CCCCcccHHHHH
Q 028970 132 SEEEDTCPICLEEYDTENPKL-IT-KCEHHFHLSCIL 166 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~-~~-~C~H~Fh~~CI~ 166 (201)
.+....|++|...+......+ -. .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 456678999999985544433 34 788999999985
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.78 E-value=0.29 Score=33.04 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCCcccccccccccC-CC-CCeEEcCCCCcccHHHHHHHHh--cCCCCcccccccc
Q 028970 132 SEEEDTCPICLEEYD-TE-NPKLITKCEHHFHLSCILEWNE--RSESCPICDQDAV 183 (201)
Q Consensus 132 ~~~~~~C~ICle~~~-~~-~~~~~~~C~H~Fh~~CI~~Wl~--~~~~CP~Cr~~~~ 183 (201)
.+++..|.||..... .. +.+.--.|.-.||..|+..-+. ..-.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 357788999987531 11 2223346778999999974321 1227999966543
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.56 E-value=0.8 Score=30.96 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC----CCcccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQD 181 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----~CP~Cr~~ 181 (201)
...++.|.||... ++.+.-..|.-.||..|+..=+.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4567789999875 35444456888999999976554322 89999754
No 96
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=77.69 E-value=0.77 Score=35.31 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=32.6
Q ss_pred ccccccccccCCCC----CeEEcCCCCcccHHHHHH------HHh-----cCCCCccccccc
Q 028970 136 DTCPICLEEYDTEN----PKLITKCEHHFHLSCILE------WNE-----RSESCPICDQDA 182 (201)
Q Consensus 136 ~~C~ICle~~~~~~----~~~~~~C~H~Fh~~CI~~------Wl~-----~~~~CP~Cr~~~ 182 (201)
..|+||...|...+ -+.--.|..-||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999996654 223356889999999842 111 156999998754
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.53 E-value=0.15 Score=34.88 Aligned_cols=49 Identities=18% Similarity=0.491 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCcccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQD 181 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~ 181 (201)
.+...|.||...-.....+.--.|...||..|+..=+.. .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 466679999887533344455678899999999743332 2279999654
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.77 E-value=4.3 Score=28.26 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=23.6
Q ss_pred CCccccccccccc------CCCCCeEEcCCCCcccHHHHH
Q 028970 133 EEEDTCPICLEEY------DTENPKLITKCEHHFHLSCIL 166 (201)
Q Consensus 133 ~~~~~C~ICle~~------~~~~~~~~~~C~H~Fh~~CI~ 166 (201)
+....|.+|+..- ..++-+.-..|+..||..||.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3556799998753 122344446789999999995
No 99
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.00 E-value=1.6 Score=31.64 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=33.0
Q ss_pred cCCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHH------h-----cCCCCcccccc
Q 028970 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN------E-----RSESCPICDQD 181 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl------~-----~~~~CP~Cr~~ 181 (201)
....++.|.||-+-- +-+.--.|-..||..||.+-+ + ..=.|++|+-.
T Consensus 53 ~Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345677799998763 433335688999999999752 1 11289999653
No 100
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.53 E-value=0.88 Score=31.22 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=30.7
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc---CCCCccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQ 180 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~~CP~Cr~ 180 (201)
+...| ||-...+.+.-+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44557 88776644444444678899999998653322 339999974
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.66 E-value=3.2 Score=26.64 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=31.8
Q ss_pred cCCCccccccccccc--CCCCCeEEcCCCCcccHHHHHHHHh--cCCCCccccc
Q 028970 131 ASEEEDTCPICLEEY--DTENPKLITKCEHHFHLSCILEWNE--RSESCPICDQ 180 (201)
Q Consensus 131 ~~~~~~~C~ICle~~--~~~~~~~~~~C~H~Fh~~CI~~Wl~--~~~~CP~Cr~ 180 (201)
...+++.|.||...- ..+..+.--.|.-.||..|+..-.. ..-.|+.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345777899998764 2223333357889999999874221 1227887754
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.89 E-value=0.71 Score=30.35 Aligned_cols=45 Identities=20% Similarity=0.531 Sum_probs=28.8
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~~CP~Cr~ 180 (201)
..|.||...-..+..+.--.|...||..|+..=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368889864323444444578899999999743332 226888853
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.54 E-value=1.3 Score=27.78 Aligned_cols=51 Identities=25% Similarity=0.517 Sum_probs=33.2
Q ss_pred CCCcccccccccccCC--CCCeEEcCCCCcccHHHHHHHHh-------cCCCCccccccc
Q 028970 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNE-------RSESCPICDQDA 182 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~-------~~~~CP~Cr~~~ 182 (201)
..++..|.||...... ...+.-..|...||..|+..-+. ..-.|+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3567789999976422 23333356889999999875332 223788886543
No 104
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.25 E-value=2.5 Score=27.57 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=31.8
Q ss_pred CCcccccccccccCC-CCCeEEcCCCCcccHHHHHHHHh-----cCCCCccccccc
Q 028970 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQDA 182 (201)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~-----~~~~CP~Cr~~~ 182 (201)
.+...| ||...++. ..-+.-..|..-||..|+.--.. ....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 445556 99888742 23333456889999999852211 345999998653
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.44 E-value=1.9 Score=29.22 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=27.9
Q ss_pred CCcccccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQDA 182 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~~~ 182 (201)
.+...| ||..... +..+.--. |. .-||..|+. |.. .-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 355567 9988652 22222223 44 579999997 332 33899997643
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.02 E-value=2 Score=27.63 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=27.9
Q ss_pred CCcccccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQDA 182 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~~~ 182 (201)
.+...| ||..... +.-+.--. |. .-||..|+. |.. .-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 455567 8988642 22211123 55 589999997 433 23899997643
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.02 E-value=0.67 Score=29.81 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=25.9
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCccccc
Q 028970 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~~CP~Cr~ 180 (201)
.|.||...-..+..+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 35566643222233333467899999999844432 227888864
No 108
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.70 E-value=1.4 Score=28.50 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=30.7
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHH---------HhcCCCCcccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW---------NERSESCPICDQD 181 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W---------l~~~~~CP~Cr~~ 181 (201)
+...| ||...+....-+.--.|..-||..|+.-- ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34557 89888743333333568899999998521 1246699999653
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.38 E-value=1.5 Score=30.64 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=28.1
Q ss_pred ccccccccc-CCCCCeEEcCCCCcccHHHHHHHHhcC----CCCccccc
Q 028970 137 TCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (201)
Q Consensus 137 ~C~ICle~~-~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~~CP~Cr~ 180 (201)
.|.||...- ..++.+.--.|...||..|+..-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577777643 222333335688999999987655432 28888864
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.07 E-value=1.4 Score=29.19 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCCCeEEcCC----CCcccHHHHHHHHhc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKC----EHHFHLSCILEWNER 171 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C----~H~Fh~~CI~~Wl~~ 171 (201)
.....|.+|.+.++...- ..| .|.||.-|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHF---VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHF---VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTS---EECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCce---eeCCCccCCeeeccccHHHHHh
Confidence 455679999999944333 345 599999999998874
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.93 E-value=1 Score=34.67 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=31.2
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQDA 182 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~~ 182 (201)
++.|.+|...- +.+.-..|...||..|+..=+.. .-.||.|+...
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 45799998653 44444567789999999754433 22799997654
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=65.07 E-value=2.4 Score=29.60 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=27.8
Q ss_pred cCCCcccccccccccCCCCCeEEc--CCCCcccHHHHHHHHhcCC----CCcccc
Q 028970 131 ASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNERSE----SCPICD 179 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~~~~----~CP~Cr 179 (201)
...+++.|.+|.+. ++.+.-- .|...||..|+. |.... .||.|.
T Consensus 11 ~~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 44677889999843 3332223 477899999987 44311 566554
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.21 E-value=0.9 Score=29.85 Aligned_cols=43 Identities=23% Similarity=0.601 Sum_probs=24.6
Q ss_pred ccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----C-CCCccccc
Q 028970 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNER----S-ESCPICDQ 180 (201)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~-~~CP~Cr~ 180 (201)
|.||...-.....+.--.|...||..|+..-|.. . =.||.|+.
T Consensus 29 C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4455444322222233467889999999865442 1 27888864
No 114
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=61.28 E-value=1.8 Score=34.40 Aligned_cols=46 Identities=22% Similarity=0.528 Sum_probs=27.0
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~~CP~Cr~ 180 (201)
+..|.+|...-..+..+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3458888764333444444578899999999854432 126999964
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.05 E-value=1.4 Score=28.18 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh---cCCCCccccc
Q 028970 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPICDQ 180 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~~CP~Cr~ 180 (201)
..+...| ||...+....-+.-..|..-||..|+.--.. ....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3466678 9988764222333356788999999863221 2347888854
No 116
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=57.44 E-value=2.5 Score=23.26 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.2
Q ss_pred Cccccccccccc
Q 028970 134 EEDTCPICLEEY 145 (201)
Q Consensus 134 ~~~~C~ICle~~ 145 (201)
+...||||+..+
T Consensus 4 EGFiCP~C~~~l 15 (34)
T 3mjh_B 4 EGFICPQCMKSL 15 (34)
T ss_dssp EEEECTTTCCEE
T ss_pred cccCCcHHHHHc
Confidence 457788888777
No 117
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.33 E-value=8.5 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=29.2
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
...|..|-..+...+. ++..-+..||..|+ .|-.|++.|...
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCCC
Confidence 3468889888844333 44556788888874 688888877654
No 118
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.14 E-value=7.7 Score=25.85 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCCCCe-EEcCCCCcccHHHHHHHH-------hcCCCCcccccccc
Q 028970 132 SEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWN-------ERSESCPICDQDAV 183 (201)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl-------~~~~~CP~Cr~~~~ 183 (201)
..+...|.+|...|...... .--.||++||..|....+ +....|-.|-..+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 34566899999999554443 235799999999976532 12336777755544
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=55.10 E-value=4 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=27.0
Q ss_pred cccccccccCCCCCeE-Ec-CCCCcccHHHHHHH----HhcCCCCcccc
Q 028970 137 TCPICLEEYDTENPKL-IT-KCEHHFHLSCILEW----NERSESCPICD 179 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~-~~-~C~H~Fh~~CI~~W----l~~~~~CP~Cr 179 (201)
.|.||...+..+...+ -. .|..-||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3778988884433332 23 57789999997521 12455888874
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=54.87 E-value=30 Score=23.22 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.9
Q ss_pred CcccccccccccCC---CCCe-EEcCCCCcccHHHHHHHH-hcCCCCccccccccc
Q 028970 134 EEDTCPICLEEYDT---ENPK-LITKCEHHFHLSCILEWN-ERSESCPICDQDAVF 184 (201)
Q Consensus 134 ~~~~C~ICle~~~~---~~~~-~~~~C~H~Fh~~CI~~Wl-~~~~~CP~Cr~~~~~ 184 (201)
....|.||=+.+.. ++.. .--.|+--.|..|..--. +.+..||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 44579999999732 2221 224567788999986433 457899999988853
No 121
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=54.45 E-value=2.7 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.473 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCC-CeEEcCCCCcccHHHHHHHH-----hcCCCCcccccc
Q 028970 133 EEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWN-----ERSESCPICDQD 181 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl-----~~~~~CP~Cr~~ 181 (201)
++...| ||...++... -+.--.|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456678 9998874322 33335688899999995211 234589999763
No 122
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.87 E-value=7.7 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=25.9
Q ss_pred cCCCcccccccccccCCCCCeEEcCC-CCcccHHHHHHH
Q 028970 131 ASEEEDTCPICLEEYDTENPKLITKC-EHHFHLSCILEW 168 (201)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C-~H~Fh~~CI~~W 168 (201)
..++..-|.||.+.- .++-+.| +-.||..|..+.
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 345667799999984 3566888 789999997664
No 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.85 E-value=8.5 Score=25.27 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCcccccccccccCCCCCe-EEcCCCCcccHHHHHHH
Q 028970 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (201)
.+...|.+|...|...... .--.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4556799999999554433 33579999999997654
No 124
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.20 E-value=2.1 Score=26.49 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=24.9
Q ss_pred CcccccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
+...| ||..... +..+.--. |. .-||..|+. |.. .-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44556 9988651 22111123 44 579999997 433 227888854
No 125
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=52.81 E-value=7.5 Score=26.80 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=32.0
Q ss_pred cccccccccccCCCCCeEE-c-CCCCcccHHHHHHH------H----hcCCCCccccccc
Q 028970 135 EDTCPICLEEYDTENPKLI-T-KCEHHFHLSCILEW------N----ERSESCPICDQDA 182 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~-~-~C~H~Fh~~CI~~W------l----~~~~~CP~Cr~~~ 182 (201)
...|+||...+......+. - .|..-||..|+.-- + ...-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 3569999999855443332 2 67889999998521 1 0234899997653
No 126
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.62 E-value=11 Score=23.98 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=30.1
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
...|..|-..+...+.+ +..=+..||..|+ .|-.|++.|...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 34799999888544553 3455788898885 788998887654
No 127
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.32 E-value=9.5 Score=28.49 Aligned_cols=48 Identities=17% Similarity=0.395 Sum_probs=31.8
Q ss_pred ccCCCcccccccccccCCCCCeEEc--CCCCcccHHHHHHHHhcC----------CCCccccc
Q 028970 130 AASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNERS----------ESCPICDQ 180 (201)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~~~----------~~CP~Cr~ 180 (201)
+.+..+..|.||-+-- +-+.-- .|...||..||..++... =.|=+|.-
T Consensus 74 DeDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CTTSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4445667788887642 222222 588999999999987631 16888854
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.15 E-value=12 Score=24.49 Aligned_cols=42 Identities=14% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
.....|..|-..+ ... .+..-+..||..|+ .|-.|++.|...
T Consensus 23 ~~~~~C~~C~~~I--~~~-~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVI--RGP-FLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBC--CSC-EEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCCCccCCCEe--cce-EEEECCccccccCC--------ccCCCCCCCCCC
Confidence 3456799999988 233 33456788998885 788998887643
No 129
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.06 E-value=1.8 Score=30.08 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=27.1
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCccccc
Q 028970 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
.|.||...-.....+.-..|...||..|+..=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 46677665432233344568899999999754432 226777754
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.73 E-value=2.5 Score=26.04 Aligned_cols=43 Identities=26% Similarity=0.513 Sum_probs=25.7
Q ss_pred CcccccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
+...| ||..... +.-+.--. |. .-||..|+. |.. .-.||.|++
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 9988651 22222233 55 589999997 332 237888854
No 131
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.33 E-value=12 Score=31.89 Aligned_cols=49 Identities=14% Similarity=0.369 Sum_probs=34.0
Q ss_pred ccCCCcccccccccccCCCCCeEEc--CCCCcccHHHHHHHHhc----------CCCCcccccc
Q 028970 130 AASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNER----------SESCPICDQD 181 (201)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~~----------~~~CP~Cr~~ 181 (201)
+.+..+..|.||-+-- +-+.-- .|...||..||.+++.. .=.|=+|.-.
T Consensus 88 D~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 88 DDDGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSSSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3445667799998653 443434 78899999999999842 1278888543
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.25 E-value=9.6 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=27.9
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
..|..|-..+...+. ++..-+..||..|+ .|-.|++.|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTR-KMEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSC-EEEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCce-EEEECcCeecccCC--------cccccCCccCCC
Confidence 468888888844333 33445778887774 788888877544
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.02 E-value=9.8 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=23.3
Q ss_pred cccccccccccCCCCCe-EEcCCCCcccHHHHH
Q 028970 135 EDTCPICLEEYDTENPK-LITKCEHHFHLSCIL 166 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~ 166 (201)
+..|.+|...|...... .--.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35799999999544332 235799999999964
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.82 E-value=8.9 Score=25.04 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=25.8
Q ss_pred CCcccccccccccCCCCCe-EEcCCCCcccHHHHHHH
Q 028970 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (201)
.+...|.+|...|...... .--.||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3455799999999544332 23579999999997643
No 135
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.53 E-value=19 Score=25.02 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=36.6
Q ss_pred CcccccccccccCC-CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccce
Q 028970 134 EEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRYV 187 (201)
Q Consensus 134 ~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~ 187 (201)
+=..|..|-..+.. +.. ....=+..||..|..+-+..+..|-.|.+.|....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 44568888877731 122 234456789999998877666689999998876543
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=49.30 E-value=1.4 Score=31.51 Aligned_cols=47 Identities=19% Similarity=0.556 Sum_probs=30.4
Q ss_pred CcccccccccccCCCCCe-EEcCCCCcccHHHHHHHHhcCCCCccccc
Q 028970 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSESCPICDQ 180 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~ 180 (201)
+...|.+|...|...... .--.||.+||..|....+.....|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 445799999999543332 33679999999997766655667777743
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.18 E-value=9 Score=25.11 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCcccccccccccCCCCCe-EEcCCCCcccHHHHHH
Q 028970 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~ 167 (201)
.+...|.+|...|...... .--.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3455799999999544333 2357999999999643
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.83 E-value=9.3 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=24.7
Q ss_pred CcccccccccccCCCCCe-EEcCCCCcccHHHHHH
Q 028970 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~ 167 (201)
+...|.+|...|...... .--.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 445799999999544332 3357999999999654
No 139
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.80 E-value=13 Score=22.99 Aligned_cols=39 Identities=21% Similarity=0.525 Sum_probs=23.4
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
..|..|-..+...+. .+..=+..||..|+ .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccCC--------cccccCCcCC
Confidence 457777776633222 22344667777764 6777777764
No 140
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.63 E-value=7.1 Score=26.82 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=10.9
Q ss_pred cccHHHHHHHHh
Q 028970 159 HFHLSCILEWNE 170 (201)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (201)
.||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 141
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.11 E-value=7.4 Score=26.71 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=10.9
Q ss_pred cccHHHHHHHHh
Q 028970 159 HFHLSCILEWNE 170 (201)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (201)
.||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.71 E-value=9 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=26.3
Q ss_pred CcccccccccccCCCCCe-EEcCCCCcccHHHHHHHH
Q 028970 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWN 169 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl 169 (201)
+...|.+|...|...... .--.||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 445799999999544333 346799999999976543
No 143
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.69 E-value=14 Score=22.76 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=28.6
Q ss_pred cccccccccccCC--CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 135 EDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
...|..|-..+.. ... ++..-+..||..|+ .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCCC
Confidence 3469999888843 223 33456788998885 78889888753
No 144
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.09 E-value=7.8 Score=24.70 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=29.6
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
....|..|-..+.. . .+..-+..||..|+ .|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--V-FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--S-CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--c-EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 44579999998843 3 34556788998885 79999888754
No 145
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.73 E-value=4.2 Score=27.17 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCcccccccccccCC-CCC-eEEcCCCCcccHHHHHHHHhc--------CCCCcccccccc
Q 028970 133 EEEDTCPICLEEYDT-ENP-KLITKCEHHFHLSCILEWNER--------SESCPICDQDAV 183 (201)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~-~~~~~C~H~Fh~~CI~~Wl~~--------~~~CP~Cr~~~~ 183 (201)
+.+..|.||...-.. .+. +.--.|...||..|+..-|.. .-.|+.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356679999976422 133 233568899999999865431 228999976544
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.64 E-value=4.2 Score=25.77 Aligned_cols=43 Identities=7% Similarity=-0.038 Sum_probs=20.9
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccH-HHHHHHHhcCCCCccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHL-SCILEWNERSESCPICDQ 180 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~-~CI~~Wl~~~~~CP~Cr~ 180 (201)
+=..|..|...+... . ....=+..||. .|..+-+ ...|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG-G-HAEHEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTT-T-EEEETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCCCccccCccCCCC-c-eECcCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 445566666665332 1 22233455666 4654432 235666643
No 147
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.63 E-value=10 Score=24.34 Aligned_cols=40 Identities=25% Similarity=0.580 Sum_probs=28.7
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
....|..|-..+...+.+. .-+..||..|+ .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL--ALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE--ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE--ECCcccccccC--------CcCcCCCCcC
Confidence 4457999999885444433 34778888884 7889988875
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.03 E-value=1.4 Score=30.91 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=29.1
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCccccccc
Q 028970 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQDA 182 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~~~ 182 (201)
.|.||...-.....+.--.|...||..|+..=|.. .-.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 47777765433344444578899999998853432 12688886544
No 149
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.54 E-value=11 Score=23.70 Aligned_cols=37 Identities=27% Similarity=0.552 Sum_probs=25.0
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
..|.-|-..+.. . .+..-+..||..|+ .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~--~-~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG--R-VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS--C-CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC--e-eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 458888877732 2 33456778887774 7888887776
No 150
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.69 E-value=7.1 Score=28.27 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=31.4
Q ss_pred CCcccccccccccCC-CC-CeEEcCCCCcccHHHHHHHHhc----CCCCccccc
Q 028970 133 EEEDTCPICLEEYDT-EN-PKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 133 ~~~~~C~ICle~~~~-~~-~~~~~~C~H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
..+..|.+|...|.. .+ ...-..|.|.+|..|-..--.. .-.|-+|++
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 577889999999942 22 3355779999999985432111 116777755
No 151
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.41 E-value=12 Score=23.50 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=29.9
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
....|..|-..+...+.+ +..-+..||..|+ .|-.|++.|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTC-EEETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceE-EEeCccEeccccC--------eECCCCCCCCCC
Confidence 445799999988544442 2345778888874 788898887654
No 152
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.38 E-value=14 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=29.0
Q ss_pred cccccccccccCC--CCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 135 EDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
...|..|-..+.. ... .+..-+..||..|+ .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCCC
Confidence 3469999988843 223 34556788998885 78899888763
No 153
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=42.23 E-value=13 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=16.5
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHh
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (201)
+=..|..|-..+..+.... ..=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 3344555555553223222 22345566666555543
No 154
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.17 E-value=12 Score=24.41 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=29.4
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
....|..|-..+.. . .+..-+..||..|+ .|-.|++.|...
T Consensus 24 ~~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--A-VVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS--C-CEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc--c-EEEECCceECccCC--------EecCCCCCCCCC
Confidence 44579999988843 3 34556788998884 788998887654
No 155
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.43 E-value=13 Score=27.44 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCcccccccccccCC--CCCeEEcCCCCcccHHHHHHHHhcCC--CCccccc
Q 028970 133 EEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSE--SCPICDQ 180 (201)
Q Consensus 133 ~~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~--~CP~Cr~ 180 (201)
..+..|.+|...|.- ....+-..|.|.+|..|- .|..... .|-+|.+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 467889999998732 334455789999999996 2332211 6666654
No 156
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.35 E-value=6.8 Score=24.70 Aligned_cols=42 Identities=17% Similarity=0.453 Sum_probs=29.6
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
....|..|-..+...+. +..-+..||..|+ .|..|++.|...
T Consensus 8 ~~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEK--VSSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTE--EEETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeE--EEECCeEeeCCCC--------CCCCCCCccCCC
Confidence 34579999998854443 2345778888874 788998887643
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.65 E-value=12 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=24.7
Q ss_pred CcccccccccccCCCCCe-EEcCCCCcccHHHHHH
Q 028970 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~ 167 (201)
+...|.+|...|...... .--.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 357899999999544333 3357999999998654
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=40.61 E-value=10 Score=26.70 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=29.7
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
....|.-|-..+. ...++..-+..||..|+ .|-.|++.|.
T Consensus 60 ~~~~C~~C~~~I~--~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIA--DRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCC--SSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred cCCcCcCCCCCcC--CcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 4567999999884 33234556888998884 7999998886
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=40.13 E-value=9.7 Score=23.33 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=30.4
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
....|..|-..+...+.+ +..=+..||..|. .|-.|++.|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~-~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEE-EEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceE-EEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 345799999988544443 3355778888885 788998887654
No 160
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.04 E-value=22 Score=21.66 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=25.5
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
..|..|-..+. .. .+..-+..||..|+ .|-.|++.|..
T Consensus 6 ~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPIT--TG-GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCC--SS-EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeec--cc-eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 46888888773 22 23455778887774 68888887753
No 161
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.94 E-value=10 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.416 Sum_probs=28.2
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
..|..|-..+. .. .+..-+..||..|+ .|-.|++.|....
T Consensus 16 ~~C~~C~~~I~--~~-~v~a~~~~wH~~CF--------~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIE--GE-VVSALGKTYHPDCF--------VCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCC--SC-CEEETTEEECTTTS--------SCSSSCCCCCSSS
T ss_pred CcCccccCEec--cc-eEEECCceeCccCC--------ccccCCCCCCCCC
Confidence 36999998884 22 33456788888875 7889988876443
No 162
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.06 E-value=20 Score=22.89 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=30.1
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
....|..|-..+...+.+ ..-+..||..|+ .|-.|++.|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 445799999888443332 345778998884 7889988776544
No 163
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.25 E-value=16 Score=22.13 Aligned_cols=39 Identities=13% Similarity=0.437 Sum_probs=28.0
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
...|..|-..+. .. .+..-+..||..|+ .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE--GR-VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC--SC-EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec--ce-EEEECccccccCcC--------EECCCCCCCCC
Confidence 346889988884 33 44556788888874 78889887764
No 164
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=38.16 E-value=5.2 Score=24.86 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=25.5
Q ss_pred CcccccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (201)
+...| ||..... +.-+.--. |. .-||..|+. |.. .-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 44556 9988641 22212223 44 789999997 332 338888864
No 165
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.90 E-value=9.7 Score=23.46 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=25.8
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
...|..|-..+. .. .+..-+..||..|+ .|-.|++.|...
T Consensus 5 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII--GR-VIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC--SC-CEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec--ce-EEEECcccccccCC--------EeCCCCCcCCCC
Confidence 346888887773 22 23445677887774 678887776654
No 166
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.82 E-value=13 Score=29.13 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=25.6
Q ss_pred CcccccccccccCCCCCe-EEcCCCCcccHHHHHHH
Q 028970 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (201)
+...|.+|...|...... .--.||++||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999999554333 33679999999997543
No 167
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.97 E-value=28 Score=22.30 Aligned_cols=48 Identities=23% Similarity=0.522 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCCCeEEc--CCCCcccHHHHHHHHh---------cCCCCcccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNE---------RSESCPICDQD 181 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~---------~~~~CP~Cr~~ 181 (201)
.+...| ||-.....+.-+.-- .|..-||..|+.---. ....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 355567 898874333332333 6888999999853211 24589999764
No 168
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.40 E-value=9.9 Score=26.37 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 152 LITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
.-..||+.|. .-+.....||.|+.......
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4578999981 22344569999988765544
No 169
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.80 E-value=19 Score=22.76 Aligned_cols=38 Identities=21% Similarity=0.471 Sum_probs=25.3
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
..|..|-..+. .. .+..-+..||..|+ .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT--GP-FMVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC--SC-CBCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC--ce-EEEECCceeccccC--------CccCCCCccCC
Confidence 35888888774 22 33445677887774 68888887754
No 170
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.80 E-value=21 Score=22.65 Aligned_cols=41 Identities=22% Similarity=0.525 Sum_probs=28.0
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
..|..|-..+..... ++..=+..||..|+ .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR-ELFYEDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCC-BCCCSSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred CcCccCCCccccCcE-EEEeCCccccccCC--------eecCCCCccCCC
Confidence 369999888843233 33345778888874 788998887643
No 171
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=34.08 E-value=16 Score=18.44 Aligned_cols=10 Identities=60% Similarity=1.172 Sum_probs=6.5
Q ss_pred CCcc-----cCCCCC
Q 028970 2 GGCC-----CSSRKP 11 (201)
Q Consensus 2 g~cc-----~~~~~~ 11 (201)
++|| ||++|-
T Consensus 1 ~~CC~~pngCs~rWC 15 (26)
T 1q2j_A 1 ERCCNGRRGCSSRWC 15 (26)
T ss_dssp CCSCSSSSCCCSSSS
T ss_pred CCccCCCCcccchhh
Confidence 4566 777765
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.07 E-value=16 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=28.9
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
....|.-|-..+. .. .+..-+..||..|+ .|-.|++.|...
T Consensus 14 ~~~~C~~C~~~I~--~~-~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID--EQ-PLIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC--SC-CCCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEec--ce-EEEECcceeCCCCC--------EeCCCCCccCCC
Confidence 4457999998884 22 23456778888774 788998887644
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.94 E-value=16 Score=23.87 Aligned_cols=41 Identities=22% Similarity=0.596 Sum_probs=24.4
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
...|..|-..+...+. +..-+..||..|+ .|-.|++.|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 3457777777743332 2455667777664 566776665543
No 174
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.90 E-value=42 Score=23.17 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=20.8
Q ss_pred CcccccccccccCC-CCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccc
Q 028970 134 EEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAV 183 (201)
Q Consensus 134 ~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (201)
+=..|..|...+.. +.. ....=+..||..|..+-+.....|..|.+.|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCC-EEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCe-EEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 33445555554421 111 12233444555555443332224555555544
No 175
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.87 E-value=21 Score=22.41 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=26.3
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
..|..|-..+.. . .+..=+..||..|+ .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~--~-~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQ--G-GVTYRDQPWHRECL--------VCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCS--C-CEESSSSEECTTTC--------BCSSSCCBCTTC
T ss_pred CcCCCCCCEecC--c-EEEECCchhhhhhC--------CcccCCCcCCCC
Confidence 468888887733 2 33455778887774 688888887543
No 176
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.70 E-value=5.3 Score=24.69 Aligned_cols=37 Identities=22% Similarity=0.660 Sum_probs=23.5
Q ss_pred cccccccccccCCC---CCeEEcC--CCCcccHHHHHHHHhc
Q 028970 135 EDTCPICLEEYDTE---NPKLITK--CEHHFHLSCILEWNER 171 (201)
Q Consensus 135 ~~~C~ICle~~~~~---~~~~~~~--C~H~Fh~~CI~~Wl~~ 171 (201)
...||-|...++-. +.+.-.. |++.||..|...|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34688887777332 2222223 7888998888888643
No 177
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=31.67 E-value=2.4 Score=26.32 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=27.0
Q ss_pred CCcccccccccc-cCCCCCeEEcCCCCcccHHHHHHHHhcCC----CCccccc
Q 028970 133 EEEDTCPICLEE-YDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQ 180 (201)
Q Consensus 133 ~~~~~C~ICle~-~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----~CP~Cr~ 180 (201)
.+...|.||+.. |..+.--.-.-|.-.||..|-.+|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 466789999865 43333333345666677766555543322 5555543
No 178
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.62 E-value=21 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=24.8
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
...|..|-..+.. .. +..-+..||..|+ .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~--~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS--GG-ITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT--TC-EEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc--ce-EEECccccccCcC--------EECCCCCCCCC
Confidence 3468888877742 22 2334677887774 67888877753
No 179
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.54 E-value=8.3 Score=24.60 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=25.1
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
...|..|-..+...+. +..-+..||..|+ .|-.|++.|...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 3468888877744442 2345677777764 577777766543
No 180
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=29.27 E-value=6.9 Score=23.18 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=24.7
Q ss_pred ccccccCCCCCeEEcCCCCcccHHHHHHHH---hcCCCCccccc
Q 028970 140 ICLEEYDTENPKLITKCEHHFHLSCILEWN---ERSESCPICDQ 180 (201)
Q Consensus 140 ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl---~~~~~CP~Cr~ 180 (201)
||......+.-+.--.|..-||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 787765322333334578899999986322 13447888864
No 181
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.24 E-value=12 Score=31.89 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCCCe-EEcCCCCcccHHHHHHHHh-------cCCCCccccccc
Q 028970 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNE-------RSESCPICDQDA 182 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~-------~~~~CP~Cr~~~ 182 (201)
.+...|.+|...|...... .--.||++||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3456799999999433222 3357999999999876542 134677775443
No 182
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.91 E-value=59 Score=22.21 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=24.9
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
+=..|..|...+. .......=+..||..|..+- ....|..|.+.|..
T Consensus 29 ~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCC--cCEEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3455666666652 11222344556666665442 23467777666654
No 183
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.89 E-value=3.5 Score=26.95 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=15.6
Q ss_pred CCCCcccHHHHHHHHhcCCCCc
Q 028970 155 KCEHHFHLSCILEWNERSESCP 176 (201)
Q Consensus 155 ~C~H~Fh~~CI~~Wl~~~~~CP 176 (201)
.|++.||..|-..|=. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6899999999988844 4553
No 184
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.82 E-value=26 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCcccccccccccCC-CCCeEEcCCCCcccHHHHHHHHhc
Q 028970 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171 (201)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~ 171 (201)
.+=..|..|...+.. +.. ....=+..||..|..+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCc
Confidence 355678888777732 122 22344677888888776654
No 185
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=28.21 E-value=17 Score=22.72 Aligned_cols=41 Identities=15% Similarity=0.432 Sum_probs=28.6
Q ss_pred ccccccccccCC---CCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 136 DTCPICLEEYDT---ENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 136 ~~C~ICle~~~~---~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
..|..|-..+.. ... .+..=+..||..|+ .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCCC
Confidence 469999888843 223 33445788998884 789998887643
No 186
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.07 E-value=38 Score=22.19 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=30.6
Q ss_pred CcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
+=..|..|...+... . ....=+..||..|..+ .....|..|.+.|...
T Consensus 32 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANE-T-FVAKDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSS-C-CEEETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcC-e-eECcCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 456688887777322 1 2234467788888633 2345899999988754
No 187
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.73 E-value=15 Score=23.39 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=6.0
Q ss_pred cCCCCcccccccc
Q 028970 171 RSESCPICDQDAV 183 (201)
Q Consensus 171 ~~~~CP~Cr~~~~ 183 (201)
..-.||+|+..+.
T Consensus 7 eiL~CP~ck~~L~ 19 (69)
T 2pk7_A 7 DILACPICKGPLK 19 (69)
T ss_dssp GTCCCTTTCCCCE
T ss_pred hheeCCCCCCcCe
Confidence 3334555554443
No 188
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.38 E-value=14 Score=23.43 Aligned_cols=39 Identities=15% Similarity=0.528 Sum_probs=25.9
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVF 184 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (201)
...|..|-..+. .. .+..-+..||..|+ .|..|++.|..
T Consensus 15 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPIL--DR-ILRAMGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCC--SC-CEEETTEEECTTTC--------BCSSSCCBCTT
T ss_pred CCccccCCCeec--ce-eEEECCccccHHhc--------CcccCCCccCC
Confidence 346888888774 22 33445677887774 68888887753
No 189
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.06 E-value=24 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=25.8
Q ss_pred ccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 028970 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
..|..|-..+.. . .+..-+..||..|+ .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~--~-~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE--N-YLSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS--S-CEEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc--e-eEEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 468888887743 2 23445677887774 688888877654
No 190
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.56 E-value=28 Score=20.98 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=27.6
Q ss_pred cccccccccCCCCCeEEcCCCCccc--HHHHHHHHhcCCCCcccccccccc
Q 028970 137 TCPICLEEYDTENPKLITKCEHHFH--LSCILEWNERSESCPICDQDAVFR 185 (201)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh--~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (201)
.|.-|-..+...+. .+..-+..|| ..|+ .|-.|++.|...
T Consensus 4 ~C~~C~~~I~~~~~-~v~a~~~~wH~~~~CF--------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQ-RVTYNNFSWHASTECF--------LCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSC-EEEETTEEEETTTTTS--------BCTTTCCBCTTS
T ss_pred CCcCCCCeeccCce-EEEECCCccCCCCCCE--------ECCCCCCcCCCC
Confidence 58888888854333 3344578888 8884 788888887543
No 191
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=24.45 E-value=35 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCcccccccccc-cCCCCCeEEcCCCCcccHHHHHH
Q 028970 133 EEEDTCPICLEE-YDTENPKLITKCEHHFHLSCILE 167 (201)
Q Consensus 133 ~~~~~C~ICle~-~~~~~~~~~~~C~H~Fh~~CI~~ 167 (201)
.....|.||... ...-..-....|.-.||..|-.+
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 456679999754 21111112346889999999765
No 192
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.53 E-value=40 Score=24.65 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=19.7
Q ss_pred cccccccccccCCCCCeEEcCCCCcccHHHHHHHHhc
Q 028970 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER 171 (201)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~ 171 (201)
=..|.+|-..+..++......=+..||..|..+.+..
T Consensus 93 CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 93 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp GCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 3456666666533333223344566666666665544
No 193
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.67 E-value=18 Score=18.77 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=8.1
Q ss_pred CCCccccccccc
Q 028970 173 ESCPICDQDAVF 184 (201)
Q Consensus 173 ~~CP~Cr~~~~~ 184 (201)
..||+|+..+..
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 368888776543
No 194
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.49 E-value=14 Score=23.42 Aligned_cols=13 Identities=0% Similarity=-0.335 Sum_probs=7.0
Q ss_pred CCccccccccccc
Q 028970 174 SCPICDQDAVFRY 186 (201)
Q Consensus 174 ~CP~Cr~~~~~~~ 186 (201)
.|+.|+..+...+
T Consensus 30 vC~~c~~~YPI~d 42 (67)
T 2jny_A 30 VNERLNLAYRIDD 42 (67)
T ss_dssp EETTTTEEEEEET
T ss_pred EcCCCCccccCCC
Confidence 5666655554443
No 195
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.63 E-value=24 Score=17.89 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=7.4
Q ss_pred CCccccccccc
Q 028970 174 SCPICDQDAVF 184 (201)
Q Consensus 174 ~CP~Cr~~~~~ 184 (201)
.||+|.+.+..
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 68888776543
No 196
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.24 E-value=10 Score=24.89 Aligned_cols=41 Identities=24% Similarity=0.624 Sum_probs=23.8
Q ss_pred ccccccccC--CCCCeEE-cCCCCcccHHHHHHHHhcCC--CCccc
Q 028970 138 CPICLEEYD--TENPKLI-TKCEHHFHLSCILEWNERSE--SCPIC 178 (201)
Q Consensus 138 C~ICle~~~--~~~~~~~-~~C~H~Fh~~CI~~Wl~~~~--~CP~C 178 (201)
||-|-..+. .....+. ..|++.||..|-..|=++|. +|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 776654431 1222233 35999999999988844333 55443
No 197
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.78 E-value=26 Score=21.99 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCC-CeEEcCCCCcccHHHHHHHH----hcCCCCccccc
Q 028970 133 EEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWN----ERSESCPICDQ 180 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl----~~~~~CP~Cr~ 180 (201)
.+...| ||...+..+. -+.--.|..-||..|+.--. .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 455568 7988764332 33335678899999986421 23448998865
No 198
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.29 E-value=44 Score=24.73 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=31.7
Q ss_pred CCcccccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCccccccccccc
Q 028970 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQDAVFRY 186 (201)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (201)
.+=..|..|...+.... . ..=+..||..|..+- ....|..|++.|....
T Consensus 85 ~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFKR--FGTKCAACQLGIPPTQ 133 (182)
T ss_dssp SSTTSCTTTCCCCSSCC--E-EETTEEECHHHHHHT--TSCCCTTTCCCCCSSC
T ss_pred cccCccCCCCCccCCCc--e-eECCEeeecCccccc--cccccccCCCccCCCc
Confidence 45567788877774322 2 334677888886553 3458999998886543
Done!