Query 028971
Match_columns 201
No_of_seqs 129 out of 1216
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02364 L-ascorbate peroxidas 100.0 3.8E-63 8.2E-68 423.2 20.1 196 1-197 1-197 (250)
2 PLN02879 L-ascorbate peroxidas 100.0 1.6E-62 3.5E-67 418.9 19.7 196 1-197 2-197 (251)
3 PLN02608 L-ascorbate peroxidas 100.0 1.6E-62 3.4E-67 425.6 18.6 192 5-197 3-194 (289)
4 cd00691 ascorbate_peroxidase A 100.0 2.8E-59 6.1E-64 400.3 17.7 185 9-201 13-200 (253)
5 PLN03030 cationic peroxidase; 100.0 1.4E-57 3E-62 399.8 13.4 183 2-199 31-260 (324)
6 cd00693 secretory_peroxidase H 100.0 1.6E-55 3.4E-60 385.0 14.3 183 2-199 8-239 (298)
7 PF00141 peroxidase: Peroxidas 100.0 1.4E-54 3E-59 367.1 4.2 174 12-199 1-206 (230)
8 cd00692 ligninase Ligninase an 100.0 2E-50 4.4E-55 355.5 17.0 176 20-197 21-209 (328)
9 cd00314 plant_peroxidase_like 100.0 1.8E-50 3.8E-55 345.9 15.7 184 11-201 2-200 (255)
10 cd08201 plant_peroxidase_like_ 100.0 1.6E-50 3.4E-55 345.5 11.3 166 28-199 37-215 (264)
11 cd00649 catalase_peroxidase_1 100.0 1.1E-47 2.3E-52 343.9 14.6 185 14-199 42-313 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 2.1E-46 4.6E-51 354.2 14.4 186 15-201 53-324 (716)
13 PRK15061 catalase/hydroperoxid 100.0 1.9E-43 4.1E-48 332.8 14.9 186 13-199 53-326 (726)
14 cd08200 catalase_peroxidase_2 100.0 2.9E-41 6.2E-46 291.9 16.0 182 14-201 14-228 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.1E-36 2.4E-41 288.3 17.0 184 12-201 430-641 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.3E-35 2.9E-40 279.8 16.5 182 14-201 439-653 (726)
17 COG0376 KatG Catalase (peroxid 100.0 6.2E-32 1.3E-36 246.2 10.6 184 15-199 68-338 (730)
18 COG0376 KatG Catalase (peroxid 99.7 2.5E-17 5.4E-22 151.1 11.0 184 12-201 447-657 (730)
19 PF15656 Tox-HDC: Toxin with a 38.9 34 0.00075 26.3 2.9 54 138-195 14-69 (119)
20 KOG0400 40S ribosomal protein 32.4 35 0.00077 26.9 2.1 34 136-170 31-65 (151)
21 PRK13859 type IV secretion sys 28.4 33 0.00072 22.6 1.1 30 96-125 9-41 (55)
22 PF09533 DUF2380: Predicted li 28.2 68 0.0015 26.6 3.1 32 138-170 107-138 (188)
23 PF00043 GST_C: Glutathione S- 25.8 1.3E+02 0.0027 20.5 3.9 37 73-109 32-73 (95)
24 PF09027 GTPase_binding: GTPas 25.6 22 0.00047 24.6 -0.1 12 181-192 31-42 (66)
25 COG4982 3-oxoacyl-[acyl-carrie 21.2 30 0.00064 34.2 -0.2 55 129-194 693-747 (866)
26 cd02642 R3H_encore_like R3H do 21.1 1E+02 0.0023 20.5 2.6 32 15-46 4-42 (63)
No 1
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3.8e-63 Score=423.17 Aligned_cols=196 Identities=79% Similarity=1.337 Sum_probs=190.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccChHHhhccccCchHHHHHH
Q 028971 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (201)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~ 80 (201)
|++.||.+.+.+++++++++++|++++.++.++|.+|||+||||++||...+.|||||||.+++|+++++|.+|.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888999999999999999999999889999
Q ss_pred HHHhHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCCcccceee
Q 028971 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (201)
Q Consensus 81 i~~iK~~~~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~-~Gl~~~e~VaL 159 (201)
|+.||+++++|||||||+||||+||+++|||.|+|++||+|+.+++++++||.|+.++++|++.| ++ +||+++|||||
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999998889999999999999999 76 69999999999
Q ss_pred ecccccCcccCCCCCCCCCCCCCCCcccHHHHHHHhhC
Q 028971 160 SGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLG 197 (201)
Q Consensus 160 ~GaHtiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~ 197 (201)
+||||||.+||.|+++.|+|+.||.+|||+||++|+.+
T Consensus 160 sGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~ 197 (250)
T PLN02364 160 SGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSG 197 (250)
T ss_pred ecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcC
Confidence 99999999999999998999999999999999999987
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-62 Score=418.89 Aligned_cols=196 Identities=76% Similarity=1.308 Sum_probs=191.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccChHHhhccccCchHHHHHH
Q 028971 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (201)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~ 80 (201)
|.+.||.+.+.++++++.++++|.+++.++.++|.+|||+||||++||..++.|||||||++.+|+++++|.||..++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHhHHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCcccceeee
Q 028971 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (201)
Q Consensus 81 i~~iK~~~~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (201)
|++||++++.|||||||+||+++||+.+|||.|+|++||+|+..++++++||.|+.+++++++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999998899999999999999999 99999999999999
Q ss_pred cccccCcccCCCCCCCCCCCCCCCcccHHHHHHHhhC
Q 028971 161 GGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLG 197 (201)
Q Consensus 161 GaHtiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~ 197 (201)
||||||++||.|+|+.|.|+.||.+|||+||++|+.+
T Consensus 161 GaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~ 197 (251)
T PLN02879 161 GGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSG 197 (251)
T ss_pred ccccccccccccccCCCCCCCCccceeHHHHHHHHcC
Confidence 9999999999999999999999999999999999987
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-62 Score=425.59 Aligned_cols=192 Identities=67% Similarity=1.126 Sum_probs=187.0
Q ss_pred CCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccChHHhhccccCchHHHHHHHHHh
Q 028971 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (201)
Q Consensus 5 cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~i 84 (201)
-|.++..|..+|+.+|++|+++++++.++|.+|||+||||++||.+++.|||||||++++|+++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCcccceeeecccc
Q 028971 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (201)
Q Consensus 85 K~~~~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHt 164 (201)
|+++|+|||||||+||||+||+.+|||.|+|++||+|+..++++++||.|+.+++++++.| +++||+++|||+|+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 999999999999999999
Q ss_pred cCcccCCCCCCCCCCCCCCCcccHHHHHHHhhC
Q 028971 165 LGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLG 197 (201)
Q Consensus 165 iG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~ 197 (201)
||.+||.|++|.|+|+.||.+|||+||++|+.+
T Consensus 162 iG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~ 194 (289)
T PLN02608 162 LGRAHPERSGFDGPWTKEPLKFDNSYFVELLKG 194 (289)
T ss_pred cccccccCCCCCCCCCCCCCccChHHHHHHHcC
Confidence 999999998888999999999999999999987
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.8e-59 Score=400.31 Aligned_cols=185 Identities=59% Similarity=1.069 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccChHHhhccccCchHHHHHHHHHhHHhC
Q 028971 9 SEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF 88 (201)
Q Consensus 9 ~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~iK~~~ 88 (201)
+.+|+++|+++ +. ++.++|++|||+||||++||++.+.|||||++++++|+++++|.+|.+++++|++||+++
T Consensus 13 ~~~V~~~v~~~------~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 13 LEAARNDIAKL------ID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHH------HH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc
Confidence 45666666655 45 999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHhcCCCcccceeeeccccc
Q 028971 89 PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165 (201)
Q Consensus 89 ~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHti 165 (201)
|+|||||||++|+++||+.+|||.|+|++||+|+.++. ++++||.|+.+++++++.| +++||+++|||+|+|||||
T Consensus 86 ~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 86 PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhccccee
Confidence 99999999999999999999999999999999999986 6778999999999999999 9999999999999999999
Q ss_pred CcccCCCCCCCCCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 166 GRCHKERSGFEGPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 166 G~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
|.+||.++++.|+|+.||.+|||+||++|+.+++.|
T Consensus 165 G~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~ 200 (253)
T cd00691 165 GRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKL 200 (253)
T ss_pred ecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCcc
Confidence 999998888888888999999999999999998865
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.4e-57 Score=399.77 Aligned_cols=183 Identities=28% Similarity=0.386 Sum_probs=165.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccCh---HHhhccccCchHHHH
Q 028971 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (201)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~---~e~~~~~N~gl~~~~ 78 (201)
.+|||++|.||+++|+++ +.+|+.++|++|||+|||||+ +||||||++. .|+++++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 479999999999999999 999999999999999999998 9999999984 69999999999 699
Q ss_pred HHHHHhHHh----CC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHhcCC
Q 028971 79 RLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQMGL 151 (201)
Q Consensus 79 ~~i~~iK~~----~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (201)
++|+.||.+ || +|||||||++|||+||+++|||.|+|++||+|+.+|. ...+||.|+.++++|++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 999999975 88 8999999999999999999999999999999998873 3457999999999999999 99999
Q ss_pred CcccceeeecccccCcccCCCC-----CCC-------------------------CC-------CCCCCCcccHHHHHHH
Q 028971 152 SDKDIVALSGGHTLGRCHKERS-----GFE-------------------------GP-------WTRNPLIFDNSYFTYV 194 (201)
Q Consensus 152 ~~~e~VaL~GaHtiG~~~~~~~-----~~~-------------------------g~-------~~~tp~~fDn~yy~~l 194 (201)
+.+|||+|+||||||++||... +|. +. +..||.+|||+||+||
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 9999999999999999999521 111 00 1268999999999999
Q ss_pred hhCCc
Q 028971 195 SLGAL 199 (201)
Q Consensus 195 ~~~~~ 199 (201)
+.++.
T Consensus 256 l~~rG 260 (324)
T PLN03030 256 KNGRG 260 (324)
T ss_pred HhcCC
Confidence 98875
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.6e-55 Score=384.95 Aligned_cols=183 Identities=31% Similarity=0.474 Sum_probs=165.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccCh------HHhhccccCchH
Q 028971 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA------AEQAHSANNGLD 75 (201)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~------~e~~~~~N~gl~ 75 (201)
.++||+||.+|+++|+++ +..++.++|++|||+||||++ +||||||+++ +|+++++|.+|
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999999 999999999999999999998 8999999973 69999999999
Q ss_pred HHHHHHHHhHHh----CC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHh
Q 028971 76 IAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ--EGRLPDAKQGNDHLRQVFGAQ 148 (201)
Q Consensus 76 ~~~~~i~~iK~~----~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~ 148 (201)
++|++|+.||++ || +|||||||++|+++||+.+|||.|+|++||+|+..+.+ .+.||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 699999999974 78 89999999999999999999999999999999987643 368999999999999999 99
Q ss_pred cCCCcccceeeecccccCcccCC----C-CCCCC--------------------C----------CC-CCCCcccHHHHH
Q 028971 149 MGLSDKDIVALSGGHTLGRCHKE----R-SGFEG--------------------P----------WT-RNPLIFDNSYFT 192 (201)
Q Consensus 149 ~Gl~~~e~VaL~GaHtiG~~~~~----~-~~~~g--------------------~----------~~-~tp~~fDn~yy~ 192 (201)
+||+++|||||+||||||.+||. | ++|.| + ++ .||.+|||+||+
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 232 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYK 232 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHH
Confidence 99999999999999999999994 3 23321 1 12 789999999999
Q ss_pred HHhhCCc
Q 028971 193 YVSLGAL 199 (201)
Q Consensus 193 ~l~~~~~ 199 (201)
+|+.++.
T Consensus 233 ~l~~~~g 239 (298)
T cd00693 233 NLLAGRG 239 (298)
T ss_pred HHHhccc
Confidence 9998764
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.4e-54 Score=367.06 Aligned_cols=174 Identities=37% Similarity=0.636 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCccccC-hHHhhccccCchHHHHHHHHHhHHh---
Q 028971 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQ--- 87 (201)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~-~~e~~~~~N~gl~~~~~~i~~iK~~--- 87 (201)
||++|+++ +..+++++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|+.||++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 56777777 7779999999999999999987 999999976 7899999999998899999999976
Q ss_pred -CC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHhcCCCcccceeeeccc
Q 028971 88 -FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (201)
Q Consensus 88 -~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (201)
|| +|||||||++|+++||+.+|||.|+|++||+|+..+.+.+ +||.|..+++++++.| +++|||++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 77 7999999999999999999999999999999999997643 5999999999999999 99999999999999999
Q ss_pred ccCcccCCCCC-------------CC----------C-CCCCCCCcccHHHHHHHhhCCc
Q 028971 164 TLGRCHKERSG-------------FE----------G-PWTRNPLIFDNSYFTYVSLGAL 199 (201)
Q Consensus 164 tiG~~~~~~~~-------------~~----------g-~~~~tp~~fDn~yy~~l~~~~~ 199 (201)
|||.+||.... |. . +++ ||.+|||+||++|++++.
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~g 206 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGRG 206 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTEE
T ss_pred ccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCCC
Confidence 99999996211 00 0 234 899999999999998753
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2e-50 Score=355.48 Aligned_cols=176 Identities=31% Similarity=0.538 Sum_probs=154.1
Q ss_pred HHHHhhHh-hcCCc---hHHHHHHHhhhcCcccc-----CCCCCCCCccccCh--HHhhccccCchHHHHHHHHHhHHhC
Q 028971 20 KRKLRGFI-AEKNC---APLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (201)
Q Consensus 20 ~~~i~~~~-~~~~~---a~~~lRl~FHDc~~~d~-----~~~~gG~dgSi~~~--~e~~~~~N~gl~~~~~~i~~iK~~~ 88 (201)
+++|++.+ .+..+ ++.+|||+||||++||. ..+.|||||||++. .|++.++|.||...++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 45555444 35454 66799999999999994 56789999999874 5999999999987888888887776
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCcccceeeecccccCc
Q 028971 89 PTISYADLYQLAGVVGVEV-TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGR 167 (201)
Q Consensus 89 ~~VS~ADiialaa~~av~~-~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~ 167 (201)
+ |||||||+||+++||+. .|||.|+|++||+|+..+.++++||.|+.++++|++.| +++||+.+|||+|+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 5 99999999999999995 69999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccCCCCCCCC-CCCCCCCcccHHHHHHHhhC
Q 028971 168 CHKERSGFEG-PWTRNPLIFDNSYFTYVSLG 197 (201)
Q Consensus 168 ~~~~~~~~~g-~~~~tp~~fDn~yy~~l~~~ 197 (201)
+|......+| +|+.||.+|||+||+|++.+
T Consensus 179 a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~ 209 (328)
T cd00692 179 QDFVDPSIAGTPFDSTPGVFDTQFFIETLLK 209 (328)
T ss_pred cCCCCCCCCCCCCCCCcchhcHHHHHHHHHc
Confidence 9975554555 78999999999999998843
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.8e-50 Score=345.87 Aligned_cols=184 Identities=44% Similarity=0.732 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCC-CCCCCCccccChHHhhccccCchHHHHHHHHHhHHhCC
Q 028971 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89 (201)
Q Consensus 11 ~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~-~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~iK~~~~ 89 (201)
.|++.|++. +.+++.+++++|||+||||++|+..+ +.|||||||++.+|+++++|.+|.+++++|++||++++
T Consensus 2 ~v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcC
Confidence 356666666 66689999999999999999999886 78999999999999999999999889999999999985
Q ss_pred ---CCCHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHhcCCCcccceee
Q 028971 90 ---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (201)
Q Consensus 90 ---~VS~ADiialaa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL 159 (201)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+.+|.+..+++++++.| +++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhh
Confidence 8999999999999999999 999999999999998 5567788899999999999999 9999999999999
Q ss_pred e-ccccc-CcccCCCCCCC--CCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 160 S-GGHTL-GRCHKERSGFE--GPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 160 ~-GaHti-G~~~~~~~~~~--g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
+ |+||| |.+||...+.. +.++.||.+|||+||++|+.+++.|
T Consensus 155 ~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~ 200 (255)
T cd00314 155 SAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEW 200 (255)
T ss_pred ccCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCccc
Confidence 9 99999 99999765543 5788999999999999999998765
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.6e-50 Score=345.54 Aligned_cols=166 Identities=31% Similarity=0.473 Sum_probs=147.8
Q ss_pred hcCCchHHHHHHHhhhcCccccCCCCCCCCccccChHHhhccccCchH--HHHHHHHHhHHhCCCCCHHHHHHHHHHHHH
Q 028971 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (201)
Q Consensus 28 ~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~--~~~~~i~~iK~~~~~VS~ADiialaa~~av 105 (201)
.++.++++||||+||||++||...+.|||||||++ |...+||.|+. ..+..++.|+. ++|||||||+||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999998 56678888775 33455555533 58999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCcccceeeec-ccccCcccCCCC------CCC--
Q 028971 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLGRCHKERS------GFE-- 176 (201)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~G-aHtiG~~~~~~~------~~~-- 176 (201)
+.+|||.|+|++||+|+..+.+.+ ||.|+.++++|++.| +++||+++|||+|+| |||||++||.+. ++.
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~ 190 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPD 190 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCccccC
Confidence 999999999999999999998876 999999999999999 999999999999995 999999999764 343
Q ss_pred C--CCCCCCCcccHHHHHHHhhCCc
Q 028971 177 G--PWTRNPLIFDNSYFTYVSLGAL 199 (201)
Q Consensus 177 g--~~~~tp~~fDn~yy~~l~~~~~ 199 (201)
+ +|++||.+|||+||.+++.|++
T Consensus 191 ~~~p~dstp~~FDn~~f~E~l~g~~ 215 (264)
T cd08201 191 TVLQFFDTTIQFDNKVVTEYLSGTT 215 (264)
T ss_pred CCCCCCCCccccchHHHHHHhcCCC
Confidence 3 7999999999999999998875
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.1e-47 Score=343.91 Aligned_cols=185 Identities=39% Similarity=0.664 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcCccccCCCCCCCC-ccccChHHhhccccCchHHHHHHHHH
Q 028971 14 KAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEP 83 (201)
Q Consensus 14 ~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~gl~~~~~~i~~ 83 (201)
-.++++|++|+++++++ .++|.+|||+||++.|||.++++||++ |+|+|.+|.+++.|.||..++.+|++
T Consensus 42 ~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~p 121 (409)
T cd00649 42 LDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWP 121 (409)
T ss_pred ccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHH
Confidence 34677899999999875 699999999999999999999999998 79999999999999999999999999
Q ss_pred hHHhCC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC------------------------------------
Q 028971 84 FKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------ 126 (201)
Q Consensus 84 iK~~~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~------------------------------------ 126 (201)
||++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 122 ik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliy 201 (409)
T cd00649 122 IKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIY 201 (409)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccc
Confidence 999998 7999999999999999999999999999999996532
Q ss_pred --CCC--CCCCCCCCHHHHHHHHHHhcCCCcccceee-ecccccCcccCCC-----------------------------
Q 028971 127 --QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKER----------------------------- 172 (201)
Q Consensus 127 --~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL-~GaHtiG~~~~~~----------------------------- 172 (201)
|++ .+|.|..++.+|++.| .++|||.+||||| +||||||++||..
T Consensus 202 v~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~ 280 (409)
T cd00649 202 VNPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGK 280 (409)
T ss_pred cCCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCC
Confidence 233 5899999999999999 9999999999999 5999999999942
Q ss_pred ------CCCCCCCCCCCCcccHHHHHHHhhCCc
Q 028971 173 ------SGFEGPWTRNPLIFDNSYFTYVSLGAL 199 (201)
Q Consensus 173 ------~~~~g~~~~tp~~fDn~yy~~l~~~~~ 199 (201)
++++|+|+.||.+|||+||++|+..++
T Consensus 281 g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW 313 (409)
T cd00649 281 GKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEW 313 (409)
T ss_pred CCCCccccCCCCCCCCcchhhHHHHHHHHhccc
Confidence 256678999999999999999998553
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.1e-46 Score=354.15 Aligned_cols=186 Identities=38% Similarity=0.654 Sum_probs=168.4
Q ss_pred HHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcCccccCCCCCCCC-ccccChHHhhccccCchHHHHHHHHHh
Q 028971 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (201)
Q Consensus 15 ~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~gl~~~~~~i~~i 84 (201)
.++.+|++|+++++++ .++|.+|||+||++.||+.++++||++ |+|+|.+|.+++.|.+|.+++.+|++|
T Consensus 53 d~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pI 132 (716)
T TIGR00198 53 DLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPI 132 (716)
T ss_pred cHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHH
Confidence 3455899999999885 689999999999999999999999997 799999999999999999999999999
Q ss_pred HHhCC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-------------------------------------
Q 028971 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (201)
Q Consensus 85 K~~~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~------------------------------------- 126 (201)
|++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 133 k~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvn 212 (716)
T TIGR00198 133 KKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVN 212 (716)
T ss_pred HHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccC
Confidence 99998 8999999999999999999999999999999994321
Q ss_pred CCC--CCCCCCCCHHHHHHHHHHhcCCCcccceeee-cccccCcccCCC-------------------------------
Q 028971 127 QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER------------------------------- 172 (201)
Q Consensus 127 ~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~~~~------------------------------- 172 (201)
|++ .+|.|..++.+|++.| .++|||.+|||||+ ||||||.+||..
T Consensus 213 peg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~ 291 (716)
T TIGR00198 213 PEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGR 291 (716)
T ss_pred cccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCC
Confidence 222 5899999999999999 99999999999995 999999999941
Q ss_pred ----CCCCCCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 173 ----SGFEGPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 173 ----~~~~g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
++++|+|+.||.+|||+||+||+.+++.|
T Consensus 292 dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~ 324 (716)
T TIGR00198 292 DTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWEL 324 (716)
T ss_pred CcccccCCCCCCCCCCccchHHHHHHhcCCcee
Confidence 24457889999999999999999987765
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.9e-43 Score=332.78 Aligned_cols=186 Identities=40% Similarity=0.676 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcCccccCCCCCCCC-ccccChHHhhccccCchHHHHHHHH
Q 028971 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (201)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~gl~~~~~~i~ 82 (201)
.-.++.+|++|+++++++ .++|.+|||+||++.|||.++++||++ |+|+|.+|.+++.|.+|.+++.+|+
T Consensus 53 ~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~ 132 (726)
T PRK15061 53 KLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLW 132 (726)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHH
Confidence 345667899999999876 689999999999999999999999998 7999999999999999999999999
Q ss_pred HhHHhCC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC----------------------------------
Q 028971 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---------------------------------- 127 (201)
Q Consensus 83 ~iK~~~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------------- 127 (201)
+||++|+ .||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 133 pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgl 212 (726)
T PRK15061 133 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGL 212 (726)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccc
Confidence 9999998 89999999999999999999999999999999864321
Q ss_pred -----CC--CCCCCCCCHHHHHHHHHHhcCCCcccceeee-cccccCcccCCC---------------------------
Q 028971 128 -----EG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER--------------------------- 172 (201)
Q Consensus 128 -----~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~~~~--------------------------- 172 (201)
++ -+|.|..++.+|++.| .++|||.+|||||+ ||||||++||..
T Consensus 213 iyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~ 291 (726)
T PRK15061 213 IYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGS 291 (726)
T ss_pred eecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCC
Confidence 11 1688899999999999 99999999999995 999999999941
Q ss_pred --------CCCCCCCCCCCCcccHHHHHHHhhCCc
Q 028971 173 --------SGFEGPWTRNPLIFDNSYFTYVSLGAL 199 (201)
Q Consensus 173 --------~~~~g~~~~tp~~fDn~yy~~l~~~~~ 199 (201)
++++|+|+.||.+|||+||++|+.+++
T Consensus 292 g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W 326 (726)
T PRK15061 292 GKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEW 326 (726)
T ss_pred CCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcc
Confidence 245678999999999999999998754
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.9e-41 Score=291.93 Aligned_cols=182 Identities=28% Similarity=0.449 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCcc-ccChHHhhccccCc--hHHHHHHHHHhHHhCC-
Q 028971 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP- 89 (201)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgS-i~~~~e~~~~~N~g--l~~~~~~i~~iK~~~~- 89 (201)
.+|+.+|++ ++....+++.+|||+||++.||+.++++||++|+ |+|++|++++.|.+ |.+++.++++||+++|
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 455555555 5556678999999999999999999999999986 99999999999999 9999999999999997
Q ss_pred ------CCCHHHHHHHHHHHHHHhcCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCCC------------CHHHH
Q 028971 90 ------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ--E---GRLPDAKQ------------GNDHL 141 (201)
Q Consensus 90 ------~VS~ADiialaa~~av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~~------------~~~~l 141 (201)
.||.||+|+||+.+|||.+|| |.|+|.+||.|...+.. + .++|.+.. ..+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 799999999999999999999 99999999999987632 1 24454421 34789
Q ss_pred HHHHHHhcCCCcccceeeeccc-ccCcccCCCCCCCCCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 142 RQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
++.| .++|||..|||||+||| ++|.+|. ++ +.|+|+.+|.+|||.||++|++..+.|
T Consensus 171 rd~f-~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~N~fF~nLLd~~~~W 228 (297)
T cd08200 171 VDKA-QLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMSTEW 228 (297)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhccccee
Confidence 9999 99999999999999998 6999886 54 569999999999999999999887776
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.1e-36 Score=288.26 Aligned_cols=184 Identities=27% Similarity=0.435 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCcc-ccChHHhhcccc--CchHHHHHHHHHhHHhC
Q 028971 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF 88 (201)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgS-i~~~~e~~~~~N--~gl~~~~~~i~~iK~~~ 88 (201)
|++.|+.+|++ ++.+.-+++.|||++||++.|||.++++||++|+ |+|.+|++++.| .+|.+++.+|++||+++
T Consensus 430 v~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 36666665554 4566678999999999999999999999999985 999999999999 89999999999999999
Q ss_pred C--CCCHHHHHHHHHHHHHHhc---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCCHHHHHHH
Q 028971 89 P--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQV 144 (201)
Q Consensus 89 ~--~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP---~p------------~~~~~~l~~~ 144 (201)
| .||.||+|+||+.+|||.+ ||| .|+|.+||.|+.... ++...| .+ ....+.|++.
T Consensus 507 ~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 507 AKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 9 8999999999999999999 898 579999999998763 222222 11 1234678999
Q ss_pred HHHhcCCCcccceeeeccc-ccCcccCCCCCCCCCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 145 FGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 145 F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
| .++|||..|||||+||| ++|.+|.. + +.|+|+.+|.+|||.||++|++..+.|
T Consensus 587 a-~~lglt~~EmvaL~Gg~r~lG~~~~~-s-~~G~~T~~p~~f~NdfF~~LLd~~~~w 641 (716)
T TIGR00198 587 A-QLLTLTAPEMTVLIGGMRVLGANHGG-S-KHGVFTDRVGVLSNDFFVNLLDMAYEW 641 (716)
T ss_pred H-HhCCCChHHHHheecchhhccccCCC-C-CCCCCcCCCCccccHHHHHHhcCCcee
Confidence 9 99999999999999995 99999973 3 469999999999999999999988777
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.3e-35 Score=279.80 Aligned_cols=182 Identities=29% Similarity=0.458 Sum_probs=157.4
Q ss_pred HHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCcc-ccChHHhhccccC--chHHHHHHHHHhHHhC--
Q 028971 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-- 88 (201)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgS-i~~~~e~~~~~N~--gl~~~~~~i~~iK~~~-- 88 (201)
..|..+|++ ++...-..+.|||++||++.|||.++++||++|+ |+|.+|++++.|+ +|.+++.+|++||+++
T Consensus 439 ~di~~lk~~---i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 439 ADIAALKAK---ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 445555554 5555667999999999999999999999999985 9999999999999 9999999999999997
Q ss_pred -----CCCCHHHHHHHHHHHHHHhc---CC--CCCCCCCCCCCCCCCCC--C---CCCCCCC------------CCHHHH
Q 028971 89 -----PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPPQ--E---GRLPDAK------------QGNDHL 141 (201)
Q Consensus 89 -----~~VS~ADiialaa~~av~~~---GG--P~~~v~~GR~D~~~s~~--~---~~lP~p~------------~~~~~l 141 (201)
|.||.||+|+||+.+|||.+ || |.|+|.+||.|+..... + .++|... ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 68999999999999999998 58 99999999999987632 2 2457543 123789
Q ss_pred HHHHHHhcCCCcccceeeeccc-ccCcccCCCCCCCCCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 142 RQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
++.| .++|||..|||||+||| ++|..|. ++ +.|+|+.+|.+|||.||+||++..+.|
T Consensus 596 ~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~~-~S-~~G~~T~~p~~fsNdfFvnLLdm~~~W 653 (726)
T PRK15061 596 VDKA-QLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMGTEW 653 (726)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcCCcee
Confidence 9999 99999999999999997 6898884 44 579999999999999999999887777
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.2e-32 Score=246.17 Aligned_cols=184 Identities=39% Similarity=0.661 Sum_probs=163.4
Q ss_pred HHHHHHHHHhhHhhcC---------CchHHHHHHHhhhcCccccCCCCCCCC-ccccChHHhhccccCchHHHHHHHHHh
Q 028971 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (201)
Q Consensus 15 ~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~gl~~~~~~i~~i 84 (201)
.+..++++|+++.+++ ...|.+|||+||-+++|+..++.||.. |..+|.++.++|.|.+|++++.+|.+|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 4556899999999886 368999999999999999999999988 699999999999999999999999999
Q ss_pred HHhCC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC------------------------------------
Q 028971 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (201)
Q Consensus 85 K~~~~-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------------------ 127 (201)
|++|+ .||.||+|+|++.+|++.+|++.+.|..||.|-..+..
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYV 227 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYV 227 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEe
Confidence 99999 99999999999999999999999999999999877632
Q ss_pred --C--CCCCCCCCCHHHHHHHHHHhcCCCcccceeee-cccccCcccCCC------------------------------
Q 028971 128 --E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER------------------------------ 172 (201)
Q Consensus 128 --~--~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~~~~------------------------------ 172 (201)
+ .-.|+|..+..+++..| ++++++.+|+|||+ ||||+|.+|...
T Consensus 228 NPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G 306 (730)
T COG0376 228 NPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKG 306 (730)
T ss_pred CCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcC
Confidence 1 12677778889999999 99999999999997 799999999742
Q ss_pred -----CCCCCCCCCCCCcccHHHHHHHhhCCc
Q 028971 173 -----SGFEGPWTRNPLIFDNSYFTYVSLGAL 199 (201)
Q Consensus 173 -----~~~~g~~~~tp~~fDn~yy~~l~~~~~ 199 (201)
+|..+.|+.+|++|||+||.+|+.-++
T Consensus 307 ~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEW 338 (730)
T COG0376 307 PDTITSGLEGAWTTTPTQWSNEFFENLFNYEW 338 (730)
T ss_pred cccccccccccCCCCcchhhhHHHHHHhccce
Confidence 122457999999999999999998765
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.5e-17 Score=151.08 Aligned_cols=184 Identities=27% Similarity=0.428 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhhcCccccCCCCCCCCc-cccChHHhhccccC--chHHHHHHHHHhHHhC
Q 028971 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQF 88 (201)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dg-Si~~~~e~~~~~N~--gl~~~~~~i~~iK~~~ 88 (201)
+...|..+|.+ ++.+.-....+|-.+|..+.+|..|++.||.+| .|++.+.++++.|. .|.+.+.+++.|++.+
T Consensus 447 ~d~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~f 523 (730)
T COG0376 447 VDADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEF 523 (730)
T ss_pred chHHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555555555 566666789999999999999999999999997 99999999999996 5668899999999998
Q ss_pred C-CCCHHHHHHHHHHHHHHhc---CCC--CCCCCCCCCCCCCCCC-----CCCCCCC------------CCCHHHHHHHH
Q 028971 89 P-TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPPQ-----EGRLPDA------------KQGNDHLRQVF 145 (201)
Q Consensus 89 ~-~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~~-----~~~lP~p------------~~~~~~l~~~F 145 (201)
. .||.||+|+|++..+||.+ +|- .++|.+||.|++.... ..+-|-. ...-.-|+++-
T Consensus 524 nkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 524 NKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred cCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 7 7999999999999999974 454 5678999999987521 1111221 12235578888
Q ss_pred HHhcCCCcccceeeecccc-cCcccCCCCCCCCCCCCCCCcccHHHHHHHhhCCcCC
Q 028971 146 GAQMGLSDKDIVALSGGHT-LGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLGALDW 201 (201)
Q Consensus 146 ~~~~Gl~~~e~VaL~GaHt-iG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~~~~~~~ 201 (201)
+.++|+..||++|+||-. +|..+.. .-.|.|+..|..+.|.||.||++...+|
T Consensus 604 -qlL~LtapemtVLiGGlRvLg~n~g~--s~~GVfT~~pg~LtndFFvnLlDM~~~W 657 (730)
T COG0376 604 -QLLTLTAPEMTVLIGGLRVLGANYGG--SKHGVFTDRPGVLTNDFFVNLLDMGTEW 657 (730)
T ss_pred -HHhccCCccceEEEcceEeeccCCCC--CccceeccCcccccchhhhhhhhcccee
Confidence 889999999999998875 5544431 1247899999999999999999999888
No 19
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=38.88 E-value=34 Score=26.31 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCC--cccceeeecccccCcccCCCCCCCCCCCCCCCcccHHHHHHHh
Q 028971 138 NDHLRQVFGAQMGLS--DKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVS 195 (201)
Q Consensus 138 ~~~l~~~F~~~~Gl~--~~e~VaL~GaHtiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l~ 195 (201)
+..-++.+ +++++ ..++++|||.|= ..+..+.--.+.....|..-++.||.+=+
T Consensus 14 i~~pl~~I--ar~~s~~~~~I~IlSGtHG--~~~G~nw~~~~~~~R~p~l~e~~f~~eD~ 69 (119)
T PF15656_consen 14 INAPLETI--ARRPSGDNGDIHILSGTHG--YCSGQNWLSESNRLRRPGLKEKAFYKEDL 69 (119)
T ss_pred hHHHHHHH--HhCcCCCCCCEEEEeCCCC--CccccchhhccccccCchhhhhhHHHHHH
Confidence 34445555 34554 899999999883 33221100001112468888888887654
No 20
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=32.44 E-value=35 Score=26.86 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhcCCCcccc-eeeecccccCcccC
Q 028971 136 QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLGRCHK 170 (201)
Q Consensus 136 ~~~~~l~~~F~~~~Gl~~~e~-VaL~GaHtiG~~~~ 170 (201)
+++.+.+-.| +++|+++.++ |.|--+|-||.++-
T Consensus 31 ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 31 DDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHH-HHcCCChhHceeeeecccCcchhhe
Confidence 4566677789 9999999997 67779999998874
No 21
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=28.36 E-value=33 Score=22.57 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.7
Q ss_pred HHHHHHH---HHHHhcCCCCCCCCCCCCCCCCC
Q 028971 96 LYQLAGV---VGVEVTGGPDIPFHPGRDDKAEP 125 (201)
Q Consensus 96 iialaa~---~av~~~GGP~~~v~~GR~D~~~s 125 (201)
++++|+. |-+..+.||.+++-.||=-...|
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 4566663 55667899999999999655444
No 22
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=28.20 E-value=68 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCcccceeeecccccCcccC
Q 028971 138 NDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHK 170 (201)
Q Consensus 138 ~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~ 170 (201)
..+|...| .++|+++-|-+.++..|.--+.|.
T Consensus 107 a~~la~wF-~~~Gi~IHd~ti~Ip~~vH~rIH~ 138 (188)
T PF09533_consen 107 AEELAEWF-ERRGIDIHDYTIPIPRDVHRRIHG 138 (188)
T ss_pred cHHHHHHH-HHcCCChhheeEecCHHHHHHhhC
Confidence 35799999 999999999999998876555554
No 23
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=25.76 E-value=1.3e+02 Score=20.46 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=23.5
Q ss_pred chHHHHHHHHHhHHh----CC-CCCHHHHHHHHHHHHHHhcC
Q 028971 73 GLDIAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTG 109 (201)
Q Consensus 73 gl~~~~~~i~~iK~~----~~-~VS~ADiialaa~~av~~~G 109 (201)
.+.+.++.++..-.. ++ .+|.||+..+..-.-+...+
T Consensus 32 ~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 32 KVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 344567777665443 23 79999998888866655443
No 24
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=25.60 E-value=22 Score=24.58 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=4.4
Q ss_pred CCCCcccHHHHH
Q 028971 181 RNPLIFDNSYFT 192 (201)
Q Consensus 181 ~tp~~fDn~yy~ 192 (201)
..|..|||.|+.
T Consensus 31 g~~~~idn~yl~ 42 (66)
T PF09027_consen 31 GSPSEIDNNYLN 42 (66)
T ss_dssp -SS----TTT--
T ss_pred CChhhhhhhhhc
Confidence 578999999976
No 25
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=21.19 E-value=30 Score=34.21 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=34.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcccceeeecccccCcccCCCCCCCCCCCCCCCcccHHHHHHH
Q 028971 129 GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYV 194 (201)
Q Consensus 129 ~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~g~~~~tp~~fDn~yy~~l 194 (201)
.++|.|.....+..-.+..+.-++.+|||++.|+--|| +|.+.-++||-.||-++
T Consensus 693 ~alpsp~~~~~q~~~~p~~~l~~d~e~~vVivG~aEvg-----------pwGSsRTRfemE~~gel 747 (866)
T COG4982 693 AALPSPPRPFTQTPPQPRANLKVDFEDVVVIVGFAEVG-----------PWGSSRTRFEMEVEGEL 747 (866)
T ss_pred ccCCCCCCCccCCCCCchhhcccCHHHceEEecceecc-----------CccCccchhhhhhcccc
Confidence 35677655443322222266677779999999875554 66666677777777544
No 26
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.13 E-value=1e+02 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHhhcCC-------chHHHHHHHhhhcCc
Q 028971 15 AVEKCKRKLRGFIAEKN-------CAPLMLRIAWHSAGT 46 (201)
Q Consensus 15 ~v~~~~~~i~~~~~~~~-------~a~~~lRl~FHDc~~ 46 (201)
-+.+..++|.+|++++. ...+.-|++-|++.-
T Consensus 4 ~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~ 42 (63)
T cd02642 4 FVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQ 42 (63)
T ss_pred HHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHH
Confidence 45567788888998762 244688999999975
Done!