AmiGO: BLAST Results


BLAST match view associations BLAST with SR45a SR45a SR45a AT1G07350	protein from Arabidopsis thaliana	2.0e-31
BLAST match view associations BLAST with DDB_G0292698 DDB_G0292698 DDB_G0292698 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	1.2e-17
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	3.9e-12
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	6.6e-12
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Canis lupus familiaris	9.4e-12
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Canis lupus familiaris	9.5e-12
BLAST match view associations BLAST with Safb2 Safb2 Safb2 scaffold attachment factor B2	protein from Mus musculus	9.9e-12
BLAST match view associations BLAST with H9KZ12 H9KZ12 H9KZ12 Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with safb safb safb scaffold attachment factor B	gene_product from Danio rerio	1.1e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Gallus gallus	1.5e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Gallus gallus	2.3e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Sus scrofa	2.5e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Sus scrofa	2.6e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	2.8e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A cDNA FLJ50689, highly similar to Transformer-2 protein homolog	protein from Homo sapiens	2.8e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Scaffold attachment factor B2	protein from Homo sapiens	4.1e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Bos taurus	4.1e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Bos taurus	5.0e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Canis lupus familiaris	5.0e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	5.0e-11
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	protein from Mus musculus	5.0e-11
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	gene from Rattus norvegicus	5.0e-11
BLAST match view associations BLAST with Safb Safb Safb scaffold attachment factor B	gene from Rattus norvegicus	5.1e-11
BLAST match view associations BLAST with tra2a tra2a tra2a transformer-2 alpha	gene_product from Danio rerio	5.5e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Canis lupus familiaris	5.6e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A	protein from Sus scrofa	5.7e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Bos taurus	5.8e-11
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	protein from Mus musculus	5.8e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	5.9e-11
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	gene from Rattus norvegicus	5.9e-11
BLAST match view associations BLAST with Safb Safb Safb scaffold attachment factor B	protein from Mus musculus	8.5e-11
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Uncharacterized protein	protein from Sus scrofa	1.1e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Uncharacterized protein	protein from Bos taurus	1.3e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.3e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.3e-10
BLAST match view associations BLAST with SAFB SAFB SAFB SAFB protein	protein from Homo sapiens	1.3e-10
BLAST match view associations BLAST with LOC787645 LOC787645 LOC787645 Uncharacterized protein	protein from Bos taurus	1.5e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Uncharacterized protein	protein from Canis lupus familiaris	1.6e-10
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	5.2e-10
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	5.2e-10
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Sus scrofa	5.8e-10
BLAST match view associations BLAST with SLTM SLTM SLTM SAFB-like transcription modulator	protein from Homo sapiens	7.0e-10
BLAST match view associations BLAST with Saf-B Saf-B Saf-B Scaffold attachment factor B	protein from Drosophila melanogaster	8.2e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	8.4e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	8.4e-10
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.8e-09
BLAST match view associations BLAST with rsp-8 rsp-8 rsp-8	gene from Caenorhabditis elegans	1.8e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	2.0e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	2.0e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Canis lupus familiaris	2.3e-09
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Bos taurus	2.3e-09
BLAST match view associations BLAST with SLTM SLTM SLTM SAFB-like transcription modulator	protein from Homo sapiens	2.3e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.7e-09
BLAST match view associations BLAST with Sltm Sltm Sltm SAFB-like, transcription modulator	protein from Mus musculus	3.0e-09
BLAST match view associations BLAST with AtRZ-1c AtRZ-1c AtRZ-1c AT5G04280	protein from Arabidopsis thaliana	3.0e-09
BLAST match view associations BLAST with Hnrpdl Hnrpdl Hnrpdl heterogeneous nuclear ribonucleoprotein D-like	gene from Rattus norvegicus	3.3e-09
BLAST match view associations BLAST with AtRZ-1b AtRZ-1b AtRZ-1b AT1G60650	protein from Arabidopsis thaliana	3.3e-09
BLAST match view associations BLAST with tra2b tra2b tra2b transformer 2 beta homolog (Drosophila)	gene_product from Danio rerio	3.7e-09
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	3.9e-09
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	3.9e-09
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	3.9e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	4.2e-09
BLAST match view associations BLAST with SC35 SC35 SC35 AT5G64200	protein from Arabidopsis thaliana	4.3e-09
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	4.7e-09
BLAST match view associations BLAST with Rbmxrtl Rbmxrtl Rbmxrtl RNA binding motif protein, X chromosome retrogene-like	gene from Rattus norvegicus	5.0e-09
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X-linked-like 1	gene from Rattus norvegicus	5.0e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	5.8e-09
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	5.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	6.3e-09
BLAST match view associations BLAST with hnrpdl hnrpdl hnrpdl heterogeneous nuclear ribonucleoprotein D-like	gene_product from Danio rerio	9.5e-09
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	9.6e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.2e-08
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	1.3e-08
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Gallus gallus	1.6e-08
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	1.6e-08
BLAST match view associations BLAST with F1M2S4 F1M2S4 F1M2S4 Uncharacterized protein	protein from Rattus norvegicus	2.1e-08
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	2.1e-08
BLAST match view associations BLAST with RBMY1J RBMY1J RBMY1J RNA-binding motif protein, Y chromosome, family 1 member F/J	protein from Homo sapiens	2.3e-08
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	2.5e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.6e-08
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028972
        (201 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025092 - symbol:SR45a "serine/arginine rich-l...   345  2.0e-31   1
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer...   251  1.9e-21   1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding...   215  1.2e-17   1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p...   202  2.9e-16   1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"...   163  3.9e-12   1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"...   163  6.6e-12   1
UNIPROTKB|F1PPN1 - symbol:SAFB2 "Uncharacterized protein"...   172  9.4e-12   1
UNIPROTKB|J9JHN8 - symbol:SAFB2 "Uncharacterized protein"...   172  9.5e-12   1
MGI|MGI:2146808 - symbol:Safb2 "scaffold attachment facto...   172  9.9e-12   1
UNIPROTKB|H9KZ12 - symbol:H9KZ12 "Uncharacterized protein...   171  1.1e-11   1
ZFIN|ZDB-GENE-030131-698 - symbol:safb "scaffold attachme...   171  1.1e-11   1
UNIPROTKB|H9L022 - symbol:SAFB2 "Uncharacterized protein"...   169  1.5e-11   1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"...   159  2.3e-11   1
UNIPROTKB|F1SBU9 - symbol:SAFB2 "Uncharacterized protein"...   168  2.5e-11   1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"...   158  2.6e-11   1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si...   155  2.8e-11   1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho...   155  2.8e-11   1
UNIPROTKB|Q14151 - symbol:SAFB2 "Scaffold attachment fact...   166  4.1e-11   1
UNIPROTKB|E1BDE7 - symbol:SAFB2 "Uncharacterized protein"...   166  4.1e-11   1
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho...   156  5.0e-11   1
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"...   156  5.0e-11   1
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho...   156  5.0e-11   1
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog...   156  5.0e-11   1
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr...   156  5.0e-11   1
RGD|620613 - symbol:Safb "scaffold attachment factor B" s...   165  5.1e-11   1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a...   156  5.5e-11   1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"...   155  5.6e-11   1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"...   155  5.7e-11   1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo...   155  5.8e-11   1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol...   155  5.8e-11   1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho...   155  5.9e-11   1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (...   155  5.9e-11   1
MGI|MGI:2146974 - symbol:Safb "scaffold attachment factor...   163  8.5e-11   1
UNIPROTKB|F5GZU3 - symbol:SAFB "Scaffold attachment facto...   161  1.0e-10   1
UNIPROTKB|B7Z2F6 - symbol:SAFB "cDNA FLJ54744, highly sim...   161  1.0e-10   1
UNIPROTKB|F1S7J6 - symbol:SAFB "Uncharacterized protein" ...   162  1.1e-10   1
UNIPROTKB|E1B9I2 - symbol:SAFB "Uncharacterized protein" ...   161  1.3e-10   1
UNIPROTKB|Q15424 - symbol:SAFB "Scaffold attachment facto...   161  1.3e-10   1
UNIPROTKB|B7ZLP6 - symbol:SAFB "SAFB protein" species:960...   161  1.3e-10   1
UNIPROTKB|A0AV56 - symbol:SAFB "SAFB protein" species:960...   161  1.3e-10   1
UNIPROTKB|G3X6B1 - symbol:LOC787645 "Uncharacterized prot...   159  1.5e-10   1
UNIPROTKB|E2QYH6 - symbol:SAFB "Uncharacterized protein" ...   161  1.6e-10   1
UNIPROTKB|F1M131 - symbol:F1M131 "Uncharacterized protein...   150  4.8e-10   1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s...   143  5.2e-10   1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"...   143  5.2e-10   1
UNIPROTKB|F1S050 - symbol:SLTM "Uncharacterized protein" ...   153  5.8e-10   1
UNIPROTKB|H7BXE3 - symbol:SLTM "SAFB-like transcription m...   150  7.0e-10   1
FB|FBgn0039229 - symbol:Saf-B "Scaffold attachment factor...   154  8.2e-10   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   141  8.4e-10   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   141  8.4e-10   1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote...   146  1.4e-09   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   138  1.8e-09   1
WB|WBGene00004705 - symbol:rsp-8 species:6239 "Caenorhabd...   143  1.8e-09   1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein...   142  2.0e-09   1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein...   142  2.0e-09   1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ...   142  2.2e-09   1
UNIPROTKB|E2R8E1 - symbol:SLTM "Uncharacterized protein" ...   150  2.3e-09   1
UNIPROTKB|F1LRU9 - symbol:F1LRU9 "Uncharacterized protein...   150  2.3e-09   1
UNIPROTKB|E1BLT2 - symbol:SLTM "Uncharacterized protein" ...   150  2.3e-09   1
UNIPROTKB|Q9NWH9 - symbol:SLTM "SAFB-like transcription m...   150  2.3e-09   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   127  2.7e-09   2
MGI|MGI:1913910 - symbol:Sltm "SAFB-like, transcription m...   149  3.0e-09   1
TAIR|locus:2179939 - symbol:AtRZ-1c "AtRZ-1c" species:370...   141  3.0e-09   1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu...   141  3.3e-09   1
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r...   141  3.3e-09   1
TAIR|locus:2036520 - symbol:AtRZ-1b "AtRZ-1b" species:370...   140  3.3e-09   1
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b...   139  3.7e-09   1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei...   142  3.9e-09   1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ...   142  3.9e-09   1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l...   142  3.9e-09   1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein...   142  3.9e-09   1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein...   142  3.9e-09   1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein...   142  3.9e-09   1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein...   142  3.9e-09   1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,...   142  3.9e-09   1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ...   142  3.9e-09   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   123  4.2e-09   2
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic...   120  4.3e-09   2
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   134  4.7e-09   1
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ...   141  5.0e-09   1
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X...   141  5.0e-09   1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein...   140  5.8e-09   1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   133  5.9e-09   1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ...   140  6.3e-09   1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ...   136  9.5e-09   1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370...   137  9.6e-09   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   130  1.2e-08   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   131  1.3e-08   1
UNIPROTKB|F1P1M9 - symbol:SLTM "Uncharacterized protein" ...   142  1.6e-08   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   129  1.6e-08   1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein...   128  2.1e-08   1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot...   135  2.1e-08   1
UNIPROTKB|J3KQ82 - symbol:RBMY1J "RNA-binding motif prote...   136  2.3e-08   1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi...   132  2.5e-08   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   127  2.6e-08   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   127  2.6e-08   1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ...   127  2.6e-08   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   127  2.6e-08   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   127  2.6e-08   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   127  2.6e-08   1

WARNING:  Descriptions of 825 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2025092 [details] [associations]
            symbol:SR45a "serine/arginine rich-like protein 45a"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
            "RNA splicing" evidence=NAS] [GO:0009644 "response to high light
            intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
            GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
            EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
            ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
            EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
            TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
            ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
            Uniprot:Q84TH4
        Length = 382

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/100 (68%), Positives = 80/100 (80%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             DA NPGN+LYVTGLS RVT  DLE  F  EGKVT+ HLV DP TRES GF F++M++V  
Sbjct:    69 DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 128

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLR 131
             A+RCI+ L+ SVL+GR+ITVEKA+R RGRTPTPG Y GLR
Sbjct:   129 ANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLR 168


>ASPGD|ASPL0000005578 [details] [associations]
            symbol:AN6676 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
            OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
            ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
            EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
            HOGENOM:HOG000180680 Uniprot:Q5AYF4
        Length = 307

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/97 (49%), Positives = 64/97 (65%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             A N G+NL+VTG+  R+T +D+ + F   G V  C ++ DP T+ES GF FV M T E A
Sbjct:    62 AVNTGSNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQA 121

Query:    93 DRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             D   + L   V+EGR +++EKA+RSR RTPTPG Y G
Sbjct:   122 DAAKEGLQGEVIEGRTLSIEKARRSRPRTPTPGKYFG 158


>DICTYBASE|DDB_G0292698 [details] [associations]
            symbol:DDB_G0292698 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
            EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
            RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
            PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
            KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
        Length = 306

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 43/100 (43%), Positives = 61/100 (61%)

Query:    35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADR 94
             N GN L+V+ L+ R   +DL   F   GKV +C ++ DP T+ES GF FVT  + + A  
Sbjct:    68 NNGNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQD 127

Query:    95 CIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQ 134
              I+ L+ + ++G  I VEK+KRS+ R PTPG Y G   K+
Sbjct:   128 AIQRLDSTKIDGNTIRVEKSKRSKARDPTPGFYMGSERKK 167


>POMBASE|SPAC25G10.01 [details] [associations]
            symbol:SPAC25G10.01 "RNA-binding protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
            RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
            EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
            OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
        Length = 297

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 41/100 (41%), Positives = 63/100 (63%)

Query:    31 PDAA-NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETV 89
             P+ + N GN+L+V+G+++R+   +L++ F   G VT   ++ +P T+ S GF F++  TV
Sbjct:    93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152

Query:    90 EGADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             E A   I  LN     GR++ V+KAKRSR  +PTPG Y G
Sbjct:   153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/98 (40%), Positives = 53/98 (54%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G +T  ++V D RT  S GFAFV  E ++ 
Sbjct:    12 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDD 71

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   +++ N   L+GR I V+ +   R  TPTPG Y G
Sbjct:    72 SKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 163 (62.4 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 40/98 (40%), Positives = 53/98 (54%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G +T  ++V D RT  S GFAFV  E ++ 
Sbjct:   115 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDD 174

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   +++ N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   175 SKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMG 212


>UNIPROTKB|F1PPN1 [details] [associations]
            symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 EMBL:AAEX03012513
            Ensembl:ENSCAFT00000029866 Uniprot:F1PPN1
        Length = 953

 Score = 172 (65.6 bits), Expect = 9.4e-12, P = 9.4e-12
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             +N G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T + A 
Sbjct:   403 SNSGRNLWVSGLSSTTRATDLKNLFNKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEAT 462

Query:    94 RCIKYLNRSVLEGRLITVEKAK 115
             +CI +L+R+ L GR+I+VEKAK
Sbjct:   463 KCISHLHRTELHGRMISVEKAK 484


>UNIPROTKB|J9JHN8 [details] [associations]
            symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:AAEX03012513
            Ensembl:ENSCAFT00000045160 Uniprot:J9JHN8
        Length = 954

 Score = 172 (65.6 bits), Expect = 9.5e-12, P = 9.5e-12
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             +N G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T + A 
Sbjct:   404 SNSGRNLWVSGLSSTTRATDLKNLFNKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEAT 463

Query:    94 RCIKYLNRSVLEGRLITVEKAK 115
             +CI +L+R+ L GR+I+VEKAK
Sbjct:   464 KCISHLHRTELHGRMISVEKAK 485


>MGI|MGI:2146808 [details] [associations]
            symbol:Safb2 "scaffold attachment factor B2" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            MGI:MGI:2146808 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
            eggNOG:NOG248048 HOGENOM:HOG000092533 HOVERGEN:HBG078408
            OrthoDB:EOG4F4S9X CTD:9667 OMA:GTEDNGL ChiTaRS:SAFB2 EMBL:BC050855
            EMBL:BC028827 IPI:IPI00857736 RefSeq:NP_001025150.2
            UniGene:Mm.214973 UniGene:Mm.482517 ProteinModelPortal:Q80YR5
            SMR:Q80YR5 PhosphoSite:Q80YR5 PaxDb:Q80YR5 PRIDE:Q80YR5
            Ensembl:ENSMUST00000075510 GeneID:224902 KEGG:mmu:224902
            UCSC:uc008dcg.1 NextBio:377444 Bgee:Q80YR5 CleanEx:MM_SAFB2
            Genevestigator:Q80YR5 GermOnline:ENSMUSG00000042625 Uniprot:Q80YR5
        Length = 991

 Score = 172 (65.6 bits), Expect = 9.9e-12, P = 9.9e-12
 Identities = 36/83 (43%), Positives = 54/83 (65%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             + + G NL+V+GLS+    ADL+  F   GKV    +VT+ R+  +  + FVTM T + A
Sbjct:   446 SCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEA 505

Query:    93 DRCIKYLNRSVLEGRLITVEKAK 115
              +CI +L+R+ L GR+I+VEKAK
Sbjct:   506 TKCISHLHRTELHGRMISVEKAK 528


>UNIPROTKB|H9KZ12 [details] [associations]
            symbol:H9KZ12 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 EMBL:AADN02043355 EMBL:AADN02043356
            Ensembl:ENSGALT00000003015 OMA:HERDERQ Uniprot:H9KZ12
        Length = 873

 Score = 171 (65.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 37/88 (42%), Positives = 55/88 (62%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   404 GRNLWVSGLSSSTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSEEATKCI 463

Query:    97 KYLNRSVLEGRLITVEKAKRS-RGRTPT 123
              +L+R+ L G++I+VEKAK    G+ P+
Sbjct:   464 NHLHRTELHGKMISVEKAKNEPAGKKPS 491


>ZFIN|ZDB-GENE-030131-698 [details] [associations]
            symbol:safb "scaffold attachment factor B"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
            SMART:SM00513 ZFIN:ZDB-GENE-030131-698 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 EMBL:BX323550 EMBL:BX901933
            IPI:IPI00993560 Ensembl:ENSDART00000129766 ArrayExpress:F1QVW3
            Bgee:F1QVW3 Uniprot:F1QVW3
        Length = 888

 Score = 171 (65.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 37/90 (41%), Positives = 57/90 (63%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+ G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM ++E A 
Sbjct:   414 ASSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMCSIEEAT 473

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS-RGRTP 122
             +CI +L+R+ L GR+I+VE+AK    G+ P
Sbjct:   474 KCISHLHRTELHGRMISVERAKNEPAGKKP 503


>UNIPROTKB|H9L022 [details] [associations]
            symbol:SAFB2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 OMA:DKADRKD EMBL:AADN02043356
            Ensembl:ENSGALT00000021807 Uniprot:H9L022
        Length = 762

 Score = 169 (64.5 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             A   G N +V+GL++     DL+  F   GKV    +VT+ R+  +  + FVTM T E A
Sbjct:   399 AGGSGRNFWVSGLASTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEA 458

Query:    93 DRCIKYLNRSVLEGRLITVEKAKRS-RGRTPT 123
              +CI +L+++ L G++I+VEKAK    G+ PT
Sbjct:   459 TKCITHLHKTELHGKIISVEKAKNEPAGKKPT 490


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 159 (61.0 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 41/98 (41%), Positives = 51/98 (52%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G + +  +V D ++R S GFAFV  E VE 
Sbjct:   112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVED 171

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209


>UNIPROTKB|F1SBU9 [details] [associations]
            symbol:SAFB2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:CU928983
            Ensembl:ENSSSCT00000014770 Uniprot:F1SBU9
        Length = 953

 Score = 168 (64.2 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 35/83 (42%), Positives = 54/83 (65%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             +++ G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T + A
Sbjct:   399 SSSSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEA 458

Query:    93 DRCIKYLNRSVLEGRLITVEKAK 115
              +CI +L+R+ L GR+I+VEKAK
Sbjct:   459 TKCISHLHRTELHGRMISVEKAK 481


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 158 (60.7 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 40/98 (40%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T +DL + F   G + +  +V D ++R S GFAFV  E V+ 
Sbjct:   104 ANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 163

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   164 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 201


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:    12 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 71

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:    72 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:    12 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 71

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:    72 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109


>UNIPROTKB|Q14151 [details] [associations]
            symbol:SAFB2 "Scaffold attachment factor B2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102
            PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.720.30
            EMBL:AC004611 eggNOG:NOG248048 HOGENOM:HOG000092533
            HOVERGEN:HBG078408 OrthoDB:EOG4F4S9X EMBL:D50928 EMBL:BC025279
            IPI:IPI00005648 RefSeq:NP_055464.1 UniGene:Hs.655392
            ProteinModelPortal:Q14151 SMR:Q14151 IntAct:Q14151
            MINT:MINT-5006081 STRING:Q14151 PhosphoSite:Q14151 DMDM:38372432
            PaxDb:Q14151 PeptideAtlas:Q14151 PRIDE:Q14151
            Ensembl:ENST00000252542 GeneID:9667 KEGG:hsa:9667 UCSC:uc002mcd.3
            CTD:9667 GeneCards:GC19M005587 HGNC:HGNC:21605 HPA:HPA050894
            MIM:608066 neXtProt:NX_Q14151 PharmGKB:PA134987683
            InParanoid:Q14151 OMA:GTEDNGL PhylomeDB:Q14151 ChiTaRS:SAFB2
            GenomeRNAi:9667 NextBio:36299 ArrayExpress:Q14151 Bgee:Q14151
            CleanEx:HS_SAFB2 Genevestigator:Q14151 GermOnline:ENSG00000130254
            Uniprot:Q14151
        Length = 953

 Score = 166 (63.5 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 35/79 (44%), Positives = 51/79 (64%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T + A +CI
Sbjct:   406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+R+ L GR+I+VEKAK
Sbjct:   466 SHLHRTELHGRMISVEKAK 484


>UNIPROTKB|E1BDE7 [details] [associations]
            symbol:SAFB2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:DAAA02019580
            IPI:IPI00837910 Ensembl:ENSBTAT00000044703 Uniprot:E1BDE7
        Length = 954

 Score = 166 (63.5 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 35/79 (44%), Positives = 51/79 (64%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G NL+V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T + A +CI
Sbjct:   405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 464

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+R+ L GR+I+VEKAK
Sbjct:   465 SHLHRTELHGRMISVEKAK 483


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G + +  +V D ++R S GFAFV  E V+ 
Sbjct:   112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G + +  +V D ++R S GFAFV  E V+ 
Sbjct:   112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G + +  +V D ++R S GFAFV  E V+ 
Sbjct:   112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G + +  +V D ++R S GFAFV  E V+ 
Sbjct:   112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G + +  +V D ++R S GFAFV  E V+ 
Sbjct:   112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A    +  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209


>RGD|620613 [details] [associations]
            symbol:Safb "scaffold attachment factor B" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0030520
            "intracellular estrogen receptor signaling pathway" evidence=ISO]
            [GO:0040007 "growth" evidence=ISO] [GO:0042445 "hormone metabolic
            process" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0050684
            "regulation of mRNA processing" evidence=IDA] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 RGD:620613 GO:GO:0005634 GO:GO:0000166
            GO:GO:0043565 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0006351
            GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0050684 CTD:6294
            HOVERGEN:HBG078408 EMBL:AF056324 IPI:IPI00209618 RefSeq:NP_071789.1
            UniGene:Rn.88640 ProteinModelPortal:O88453 IntAct:O88453
            PhosphoSite:O88453 PRIDE:O88453 GeneID:64196 KEGG:rno:64196
            NextBio:612872 Genevestigator:O88453 Uniprot:O88453
        Length = 931

 Score = 165 (63.1 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 36/98 (36%), Positives = 55/98 (56%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQ 134
              +L+++ L G++I+VEKAK        P    G  +K+
Sbjct:   487 NHLHKTELHGKMISVEKAKSEPAGKRVPDRRDGDSKKE 524


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 156 (60.0 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 42/101 (41%), Positives = 53/101 (52%)

Query:    32 DA-ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88
             DA ANP  N  L V GLS   T  DL + F   G +   ++V D RT  S GFAFV  E 
Sbjct:   126 DARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEH 185

Query:    89 VEGADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             ++ A   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   186 IDDAKEAMERANGMELDGRRIRVDYSITKRPHTPTPGIYMG 226


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 155 (59.6 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:   113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 155 (59.6 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:   113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 155 (59.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:   113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 155 (59.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:   111 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   171 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 155 (59.6 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:   113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 155 (59.6 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 39/98 (39%), Positives = 52/98 (53%)

Query:    34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             ANP  N  L V GLS   T  DL + F   G ++  ++V D RT  S GFAFV  E ++ 
Sbjct:   111 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +   ++  N   L+GR I V+ +   R  TPTPG Y G
Sbjct:   171 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208


>MGI|MGI:2146974 [details] [associations]
            symbol:Safb "scaffold attachment factor B" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0030520 "intracellular estrogen receptor
            signaling pathway" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0042445 "hormone metabolic process" evidence=IMP] [GO:0043565
            "sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0050684 "regulation of mRNA processing"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 MGI:MGI:2146974 GO:GO:0005634
            GO:GO:0040007 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0006351 GO:GO:0003682 GO:GO:0003723 Gene3D:1.10.720.30
            GO:GO:0001047 GO:GO:0042445 GO:GO:0030520 EMBL:CH466537
            EMBL:CT485788 GeneTree:ENSGT00690000102108 CTD:6294
            HOGENOM:HOG000092533 OMA:DKADRKD ChiTaRS:SAFB EMBL:BC018200
            EMBL:AK087504 IPI:IPI00944159 RefSeq:NP_001156772.1
            UniGene:Mm.255066 ProteinModelPortal:D3YXK2 SMR:D3YXK2
            IntAct:D3YXK2 PRIDE:D3YXK2 Ensembl:ENSMUST00000095224 GeneID:224903
            KEGG:mmu:224903 UCSC:uc008dck.2 OrthoDB:EOG4F4S9X NextBio:377448
            Bgee:D3YXK2 Uniprot:D3YXK2
        Length = 937

 Score = 163 (62.4 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 36/98 (36%), Positives = 55/98 (56%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQ 134
              +L+++ L G++I+VEKAK        P    G  +K+
Sbjct:   487 SHLHKTELHGKMISVEKAKSEPTGKRVPDRRDGDSKKE 524


>UNIPROTKB|F5GZU3 [details] [associations]
            symbol:SAFB "Scaffold attachment factor B1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 HGNC:HGNC:10520
            ChiTaRS:SAFB IPI:IPI00983392 ProteinModelPortal:F5GZU3 SMR:F5GZU3
            Ensembl:ENST00000433404 UCSC:uc010xiu.2 ArrayExpress:F5GZU3
            Bgee:F5GZU3 Uniprot:F5GZU3
        Length = 747

 Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   235 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 294

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   295 NHLHKTELHGKMISVEKAK 313


>UNIPROTKB|B7Z2F6 [details] [associations]
            symbol:SAFB "cDNA FLJ54744, highly similar to Scaffold
            attachment factor B" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011499
            EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802 HGNC:HGNC:10520
            HOVERGEN:HBG078408 ChiTaRS:SAFB EMBL:AK294671 IPI:IPI01018318
            SMR:B7Z2F6 STRING:B7Z2F6 Ensembl:ENST00000538656 UCSC:uc010xit.2
            Uniprot:B7Z2F6
        Length = 759

 Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   248 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 307

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   308 NHLHKTELHGKMISVEKAK 326


>UNIPROTKB|F1S7J6 [details] [associations]
            symbol:SAFB "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0042445 "hormone
            metabolic process" evidence=IEA] [GO:0040007 "growth" evidence=IEA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 GO:GO:0005634 GO:GO:0040007
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            Gene3D:1.10.720.30 GO:GO:0001047 GO:GO:0042445 GO:GO:0030520
            GeneTree:ENSGT00690000102108 OMA:DKADRKD EMBL:CU928983
            EMBL:FP089464 Ensembl:ENSSSCT00000014769 Uniprot:F1S7J6
        Length = 920

 Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 38/99 (38%), Positives = 57/99 (57%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   407 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 466

Query:    97 KYLNRSVLEGRLITVEKAKRSR-GR-TPTPGHYHGLREK 133
              +L+++ L G++I+VEKAK    G+ T       G +EK
Sbjct:   467 NHLHKTELHGKMISVEKAKNEPVGKKTSDKREGEGKKEK 505


>UNIPROTKB|E1B9I2 [details] [associations]
            symbol:SAFB "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
            PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            EMBL:DAAA02019576 GeneTree:ENSGT00690000102108 OMA:DKADRKD
            EMBL:DAAA02019577 EMBL:DAAA02019578 EMBL:DAAA02019579
            IPI:IPI01000416 Ensembl:ENSBTAT00000002344 Uniprot:E1B9I2
        Length = 902

 Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   404 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 463

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   464 NHLHKTELHGKMISVEKAK 482


>UNIPROTKB|Q15424 [details] [associations]
            symbol:SAFB "Scaffold attachment factor B1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0001047 "core promoter binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=IEA] [GO:0040007 "growth" evidence=IEA] [GO:0042445
            "hormone metabolic process" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0006325
            "chromatin organization" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
            SMART:SM00513 GO:GO:0005634 GO:GO:0040007 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
            GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0003690 GO:GO:0001047
            GO:GO:0042445 GO:GO:0030520 GO:GO:0006325 EMBL:AC011499 EMBL:U72355
            EMBL:AK298707 EMBL:AC004611 EMBL:AC134303 EMBL:AB208780 EMBL:L43631
            IPI:IPI00300631 IPI:IPI00941773 PIR:S64732 RefSeq:NP_002958.2
            UniGene:Hs.728802 ProteinModelPortal:Q15424 SMR:Q15424
            IntAct:Q15424 MINT:MINT-1033560 STRING:Q15424 PhosphoSite:Q15424
            DMDM:116242782 PaxDb:Q15424 PRIDE:Q15424 Ensembl:ENST00000292123
            Ensembl:ENST00000454510 GeneID:6294 KEGG:hsa:6294 UCSC:uc002mcf.3
            CTD:6294 GeneCards:GC19P005574 H-InvDB:HIX0014682 HGNC:HGNC:10520
            HPA:CAB001969 HPA:HPA016832 HPA:HPA020076 MIM:602895
            neXtProt:NX_Q15424 PharmGKB:PA34928 eggNOG:NOG248048
            HOGENOM:HOG000092533 HOVERGEN:HBG078408 InParanoid:Q15424
            OMA:DKADRKD PhylomeDB:Q15424 ChiTaRS:SAFB GenomeRNAi:6294
            NextBio:24435 ArrayExpress:Q15424 Bgee:Q15424 CleanEx:HS_SAFB
            Genevestigator:Q15424 GermOnline:ENSG00000160633 Uniprot:Q15424
        Length = 915

 Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   465 NHLHKTELHGKMISVEKAK 483


>UNIPROTKB|B7ZLP6 [details] [associations]
            symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC011499 EMBL:AC004611
            EMBL:AC134303 UniGene:Hs.728802 GeneID:6294 KEGG:hsa:6294 CTD:6294
            HGNC:HGNC:10520 HOVERGEN:HBG078408 ChiTaRS:SAFB GenomeRNAi:6294
            NextBio:24435 EMBL:BC143939 IPI:IPI00646058 RefSeq:NP_001188268.1
            ProteinModelPortal:B7ZLP6 STRING:B7ZLP6 PRIDE:B7ZLP6
            Ensembl:ENST00000592224 UCSC:uc002mce.4 Bgee:B7ZLP6 Uniprot:B7ZLP6
        Length = 916

 Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   465 NHLHKTELHGKMISVEKAK 483


>UNIPROTKB|A0AV56 [details] [associations]
            symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
            PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802
            GeneID:6294 KEGG:hsa:6294 CTD:6294 HGNC:HGNC:10520
            HOGENOM:HOG000092533 HOVERGEN:HBG078408 ChiTaRS:SAFB
            GenomeRNAi:6294 NextBio:24435 OrthoDB:EOG4F4S9X EMBL:BC126219
            EMBL:BC143937 IPI:IPI00983392 RefSeq:NP_001188267.1
            ProteinModelPortal:A0AV56 SMR:A0AV56 STRING:A0AV56 PRIDE:A0AV56
            Ensembl:ENST00000588852 UCSC:uc002mcg.3 ArrayExpress:A0AV56
            Bgee:A0AV56 Uniprot:A0AV56
        Length = 917

 Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   465 NHLHKTELHGKMISVEKAK 483


>UNIPROTKB|G3X6B1 [details] [associations]
            symbol:LOC787645 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102108 EMBL:DAAA02019579 EMBL:DAAA02019580
            Ensembl:ENSBTAT00000002342 Uniprot:G3X6B1
        Length = 699

 Score = 159 (61.0 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 36/98 (36%), Positives = 55/98 (56%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G   +V+GLS+    ADL+  F   GKV    +VT+ R+  +  + FVTM TVE A +CI
Sbjct:   346 GRYFWVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCI 405

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQ 134
              +L+++ L G++I+VEK         T     G R+K+
Sbjct:   406 NHLHKTELHGKMISVEKVINEPAGKKTSERREGERKKE 443


>UNIPROTKB|E2QYH6 [details] [associations]
            symbol:SAFB "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
            PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 EMBL:AAEX03012513
            Ensembl:ENSCAFT00000029855 OMA:WELEERE Uniprot:E2QYH6
        Length = 1054

 Score = 161 (61.7 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G N +V+GLS+     DL+  F   GKV    +VT+ R+  +  + FVTM T E A +CI
Sbjct:   543 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 602

Query:    97 KYLNRSVLEGRLITVEKAK 115
              +L+++ L G++I+VEKAK
Sbjct:   603 NHLHKTELHGKMISVEKAK 621


>UNIPROTKB|F1M131 [details] [associations]
            symbol:F1M131 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00196639
            Ensembl:ENSRNOT00000018496 ArrayExpress:F1M131 Uniprot:F1M131
        Length = 376

 Score = 150 (57.9 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   296 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 355

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   356 LHRTELHGQLISVEKVK 372


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 34/86 (39%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             LYV  +S   T  DL + F   G VT  H++TDP T  S G  +V M T E A   I+ L
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   100 NRSVLEGRLITVEKAKRSRGRT-PTP 124
             + ++L  R+ITV  A+  +  T P P
Sbjct:    65 DGALLRNRVITVSVARPQKQATRPAP 90


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 34/86 (39%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             LYV  +S   T  DL + F   G VT  H++TDP T  S G  +V M T E A   I+ L
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   100 NRSVLEGRLITVEKAKRSRGRT-PTP 124
             + ++L  R+ITV  A+  +  T P P
Sbjct:    65 DGALLRNRVITVSVARPQKQATRPAP 90


>UNIPROTKB|F1S050 [details] [associations]
            symbol:SLTM "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108 EMBL:CU582792
            Ensembl:ENSSSCT00000005073 OMA:MESKDET Uniprot:F1S050
        Length = 633

 Score = 153 (58.9 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 33/77 (42%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 444

Query:    99 LNRSVLEGRLITVEKAK 115
             L+RS L G+LI+VEK K
Sbjct:   445 LHRSELHGQLISVEKVK 461


>UNIPROTKB|H7BXE3 [details] [associations]
            symbol:SLTM "SAFB-like transcription modulator"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC025918 EMBL:AC090515
            HGNC:HGNC:20709 ChiTaRS:SLTM Ensembl:ENST00000249736 Bgee:H7BXE3
            Uniprot:H7BXE3
        Length = 453

 Score = 150 (57.9 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   367 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 426

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   427 LHRTELHGQLISVEKVK 443


>FB|FBgn0039229 [details] [associations]
            symbol:Saf-B "Scaffold attachment factor B" species:7227
            "Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC] [GO:0005654 "nucleoplasm"
            evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 GO:GO:0005654 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.10.720.30 GO:GO:0016363
            GO:GO:0000381 FlyBase:FBgn0039229 EMBL:BT001582
            ProteinModelPortal:Q8IGV1 STRING:Q8IGV1 PRIDE:Q8IGV1
            InParanoid:Q8IGV1 ArrayExpress:Q8IGV1 Bgee:Q8IGV1 Uniprot:Q8IGV1
        Length = 977

 Score = 154 (59.3 bits), Expect = 8.2e-10, P = 8.2e-10
 Identities = 35/86 (40%), Positives = 51/86 (59%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A    NL+V+GLST    +DL+  F   GKV    +VT+ RT  +  + +VTM +   A 
Sbjct:   357 ATLSRNLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSSSADAS 416

Query:    94 RCIKYLNRSVLEGRLITVEKAKRSRG 119
             RCI+ L+R+ L GR+I+VE+ K   G
Sbjct:   417 RCIENLHRTELHGRIISVERTKNEIG 442


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             N +YV  LS  VT  +L+ FFG  G++ E  L+ D  T  S GFAF+T  T + A   + 
Sbjct:    18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77

Query:    98 YLNRSVLEGRLITVEKAKRSRG 119
               N   L+GR I V  A+ + G
Sbjct:    78 KANGIDLQGRKIRVNIARENTG 99


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             N +YV  LS  VT  +L+ FFG  G++ E  L+ D  T  S GFAF+T  T + A   + 
Sbjct:    18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77

Query:    98 YLNRSVLEGRLITVEKAKRSRG 119
               N   L+GR I V  A+ + G
Sbjct:    78 KANGIDLQGRKIRVNIARENTG 99


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 146 (56.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 38/103 (36%), Positives = 53/103 (51%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR---SRGR--TPTPGHYHG 129
             A    + +N   L+G+ I VE+A +    RGR   P P    G
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRG 104


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/85 (37%), Positives = 47/85 (55%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR 116
             A    + +N   L+G+ I VE+A +
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATK 86


>WB|WBGene00004705 [details] [associations]
            symbol:rsp-8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
            GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
            eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
            CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
            ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
            MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
            EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
            UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
            NextBio:893300 Uniprot:Q9XTZ2
        Length = 309

 Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 35/96 (36%), Positives = 47/96 (48%)

Query:    36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95
             P   L V  LS+  T  DL   FG  G++ +C LV D  +  S GF F+    +E A   
Sbjct:    74 PSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAA 133

Query:    96 IKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLR 131
                L  + L+G  I V+ +   RG +PTPG Y G R
Sbjct:   134 RDKLCNTDLDGHKIRVDFSLTKRGHSPTPGQYMGDR 169


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 142 (55.0 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    64 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 112


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 142 (55.0 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|E2R8E1 [details] [associations]
            symbol:SLTM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
            OMA:HDARRMG EMBL:AAEX03016176 EMBL:AAEX03016175
            Ensembl:ENSCAFT00000026278 Uniprot:E2R8E1
        Length = 1017

 Score = 150 (57.9 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   368 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 427

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   428 LHRTELHGQLISVEKVK 444


>UNIPROTKB|F1LRU9 [details] [associations]
            symbol:F1LRU9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108 IPI:IPI00566573
            PRIDE:F1LRU9 Ensembl:ENSRNOT00000019984 ArrayExpress:F1LRU9
            Uniprot:F1LRU9
        Length = 1030

 Score = 150 (57.9 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   383 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 442

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   443 LHRTELHGQLISVEKVK 459


>UNIPROTKB|E1BLT2 [details] [associations]
            symbol:SLTM "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102
            PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 OMA:HDARRMG EMBL:DAAA02028819
            EMBL:DAAA02028820 IPI:IPI00715190 Ensembl:ENSBTAT00000015043
            Uniprot:E1BLT2
        Length = 1033

 Score = 150 (57.9 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   387 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 446

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   447 LHRTELHGQLISVEKVK 463


>UNIPROTKB|Q9NWH9 [details] [associations]
            symbol:SLTM "SAFB-like transcription modulator"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 GO:GO:0005634 GO:GO:0006915
            GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 Gene3D:1.10.720.30 CleanEx:HS_MET EMBL:AC025918
            EMBL:AC090515 eggNOG:NOG248048 EMBL:AK000867 EMBL:AK023275
            EMBL:AK024710 EMBL:BC014944 EMBL:BC046119 EMBL:BC108656
            EMBL:BC140851 EMBL:AL834297 IPI:IPI00792743 RefSeq:NP_001013865.1
            RefSeq:NP_079031.2 UniGene:Hs.512932 HSSP:Q9UH33
            ProteinModelPortal:Q9NWH9 SMR:Q9NWH9 IntAct:Q9NWH9 STRING:Q9NWH9
            PhosphoSite:Q9NWH9 DMDM:160185645 PaxDb:Q9NWH9 PRIDE:Q9NWH9
            Ensembl:ENST00000380516 GeneID:79811 KEGG:hsa:79811 UCSC:uc002afn.3
            CTD:79811 GeneCards:GC15M059171 H-InvDB:HIX0012286 HGNC:HGNC:20709
            HPA:HPA040256 neXtProt:NX_Q9NWH9 PharmGKB:PA142670898
            HOVERGEN:HBG096731 InParanoid:Q9NWH9 OMA:HDARRMG OrthoDB:EOG4DNF4Q
            ChiTaRS:SLTM GenomeRNAi:79811 NextBio:69400 ArrayExpress:Q9NWH9
            Bgee:Q9NWH9 CleanEx:HS_SLTM Genevestigator:Q9NWH9 Uniprot:Q9NWH9
        Length = 1034

 Score = 150 (57.9 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 444

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   445 LHRTELHGQLISVEKVK 461


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 127 (49.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 32 (16.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query:   119 GRTPTPGHYHGLR 131
             GR P PG   G++
Sbjct:   263 GRRPRPGLASGVK 275


>MGI|MGI:1913910 [details] [associations]
            symbol:Sltm "SAFB-like, transcription modulator"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 MGI:MGI:1913910 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 CleanEx:MM_MET eggNOG:NOG248048
            HOGENOM:HOG000092533 HSSP:Q9UH33 CTD:79811 HOVERGEN:HBG096731
            OMA:HDARRMG OrthoDB:EOG4DNF4Q ChiTaRS:SLTM EMBL:AF462146
            EMBL:AK017839 EMBL:AK045723 EMBL:AK077578 EMBL:AK134756
            EMBL:BC019992 IPI:IPI00229571 IPI:IPI00556695 RefSeq:NP_079966.2
            RefSeq:NP_080613.1 UniGene:Mm.22379 ProteinModelPortal:Q8CH25
            SMR:Q8CH25 STRING:Q8CH25 PhosphoSite:Q8CH25 PaxDb:Q8CH25
            PRIDE:Q8CH25 Ensembl:ENSMUST00000049263 GeneID:66660 KEGG:mmu:66660
            UCSC:uc009qok.1 InParanoid:Q8CH25 NextBio:322303 Bgee:Q8CH25
            CleanEx:MM_SLTM Genevestigator:Q8CH25 Uniprot:Q8CH25
        Length = 1031

 Score = 149 (57.5 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 31/77 (40%), Positives = 48/77 (62%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             N++V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RC+ +
Sbjct:   385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCVAH 444

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+LI+VEK K
Sbjct:   445 LHRTELHGQLISVEKVK 461


>TAIR|locus:2179939 [details] [associations]
            symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
            GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
            ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
            RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
            SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
            EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
            TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
            ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
        Length = 310

 Score = 141 (54.7 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             AA  G+ ++V GLS  VT+ DLE+ F   G + +C ++ +  T  S GF F+T       
Sbjct:     2 AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61

Query:    93 DRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLR 131
             D  I+ ++      R+I+V +A+   GR    G  HG R
Sbjct:    62 DESIREMHGRDFGDRVISVNRAEPKLGRDD--GESHGSR 98


>RGD|1309950 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
            EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
            UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
            PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
            NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
        Length = 322

 Score = 141 (54.7 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             GN +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     D+ +
Sbjct:    50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTP 122
             + L    L+G+LI  ++AK  +G+ P
Sbjct:   110 E-LKEHKLDGKLIDPKRAKALKGKEP 134


>UNIPROTKB|Q3SWU3 [details] [associations]
            symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
            D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
            EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
            UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
            PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
            NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
        Length = 322

 Score = 141 (54.7 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             GN +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     D+ +
Sbjct:    50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTP 122
             + L    L+G+LI  ++AK  +G+ P
Sbjct:   110 E-LKEHKLDGKLIDPKRAKALKGKEP 134


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 140 (54.3 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:    32 DAANPGN---NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88
             D  N GN    ++V GLS  VT   LE  F   GK+TEC ++    T    GF F+T   
Sbjct:     3 DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62

Query:    89 VEGADRCIKYLNRSVLEGRLITVEKAKRSRG 119
               GAD  IK+++   L  ++I+V KA+   G
Sbjct:    63 RRGADDAIKHMHGRELGNKVISVNKAEPKVG 93


>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
            symbol:tra2b "transformer 2 beta homolog
            (Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
            HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
            RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
            SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
            InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
            Uniprot:Q7ZUG9
        Length = 278

 Score = 139 (54.0 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 38/100 (38%), Positives = 50/100 (50%)

Query:    32 DAANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETV 89
             D ANP  N  L V GLS   T  DL + F   G +++  +V D ++R S GFA V  E  
Sbjct:   115 DRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENR 174

Query:    90 EGADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             E +    +  N   L+GR I V+ +      TPTPG Y G
Sbjct:   175 EDSKEAKERANGMELDGRRIRVDYSITKGPHTPTPGIYMG 214


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLR 110


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLR 110


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     4 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 62

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    63 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 111


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 123 (48.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 28/81 (34%), Positives = 44/81 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKA 114
               +  +N   ++GR I V++A
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQA 82

 Score = 32 (16.3 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query:   119 GRTPTPGHYHGLR 131
             GR P PG   G++
Sbjct:   229 GRRPRPGLASGVK 241


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 120 (47.3 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PD ++   +L V  ++ R T  DL   F   GKV +  +  D RT +S GFAFV  +  +
Sbjct:    10 PDISDT-YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68

Query:    91 GADRCIKYLNRSVLEGRLITVEKAK 115
              A + ++ L+  V++GR ITV+ AK
Sbjct:    69 EAHKAVERLDGRVVDGREITVQFAK 93

 Score = 38 (18.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query:   115 KRSRGRTPTPGHYHGLRE 132
             +RS  R+P+PG    LR+
Sbjct:   272 RRSNERSPSPGSPAPLRK 289

 Score = 34 (17.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query:   111 VEKAKRSRGRTPTP 124
             V   KRS  R+P+P
Sbjct:   235 VSPDKRSNERSPSP 248


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V+ LS   T+  L + F   G++ E  L+ D  T+   GF F+T ++ + A + +K L
Sbjct:     9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query:   100 NRSVLEGRLITVEKAKRS 117
             +  +++GRLI VE AK +
Sbjct:    69 DGKIVDGRLIFVEVAKNA 86


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 141 (54.7 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 141 (54.7 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 40/109 (36%), Positives = 55/109 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +       RG  P P   G   GLR
Sbjct:    62 AKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLR 110


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 35/92 (38%), Positives = 49/92 (53%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  F   G+V E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
             A    + LN   L+G+ I VE+A +    TP+
Sbjct:    62 AKDAARELNGKALDGKPIKVEQATKPSFSTPS 93


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V+GLS   TN  L+  F   G++ +  ++TD  +  S GF FVT  T+E A++    +
Sbjct:    36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
             N   L+G +I V+ A+    R P
Sbjct:    96 NAKFLDGWVIFVDPARPREPRRP 118


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 140 (54.3 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 40/110 (36%), Positives = 55/110 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS-------RGRTPTP---GHYHGLR 131
             A    + +N   L+G+ I VE+A +        RG  P P   G   GLR
Sbjct:    62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGGRRGPPPPPRSRGPPRGLR 111


>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
            symbol:hnrpdl "heterogeneous nuclear
            ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
            OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
            RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
            Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
            InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
        Length = 296

 Score = 136 (52.9 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL  +    G+V +C + TDP T  S GF FV  +  E  DR ++ L
Sbjct:    32 MFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLE-L 90

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:    91 TEHKLDGKLIDPKRAKAIKGKEP 113

 Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 25/81 (30%), Positives = 39/81 (48%)

Query:    36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95
             P   ++V GLS  +T   L ++FG  G++    L TD +T E  GF FVT    E   + 
Sbjct:   113 PPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKL 172

Query:    96 IKYLNRSVLEGRL-ITVEKAK 115
             ++     +  G+  I V + K
Sbjct:   173 LENRYHQIGSGKCEIKVAQPK 193


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 137 (53.3 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 37/96 (38%), Positives = 45/96 (46%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P    P   +YV  L   V N  LE+ F   GKV E  +V D  T  S GF FVTM  V+
Sbjct:   237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGH 126
               +  I  L+   LEGR I V  A+    R P  G+
Sbjct:   297 ELNEAISALDGQNLEGRAIRVNVAEE---RPPRRGY 329

 Score = 121 (47.7 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 31/83 (37%), Positives = 44/83 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V  L+  V +  L   F   G V    ++ +  T +S GF FVTM +V+ A+  ++  
Sbjct:   152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
             NR  L GRL+TV KA   RG  P
Sbjct:   212 NRYDLNGRLLTVNKAA-PRGSRP 233


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/91 (37%), Positives = 51/91 (56%)

Query:    40 LYVTGLSTRVTNAD-LEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             L++ GL+   TN D LE+ F   G+++E  +V D  T+ S GF FVT E V+ A   +  
Sbjct:     7 LFIGGLNFE-TNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query:    99 LNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             +N   ++GR I V++A +S G     G Y G
Sbjct:    66 MNGKSVDGRQIRVDQAGKSSGERR--GGYRG 94


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 131 (51.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T   LE+ F   G + +  ++ D  T  S GF FVT E  E A   +  +
Sbjct:    25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84

Query:   100 NRSVLEGRLITVEKAKRSRGRT 121
             N   ++GR+I V++A +S GR+
Sbjct:    85 NGKQVDGRMIRVDEAGKSGGRS 106


>UNIPROTKB|F1P1M9 [details] [associations]
            symbol:SLTM "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00690000102108
            OMA:HDARRMG EMBL:AADN02040361 IPI:IPI00597539
            Ensembl:ENSGALT00000006663 Uniprot:F1P1M9
        Length = 979

 Score = 142 (55.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             NL+V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   335 NLWVSGLSSNTKAADLKNLFGKYGKVLGAKVVTNARSPGAKCYGIVTMSSSTEVARCIAH 394

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+ I+VEK K
Sbjct:   395 LHRTELHGQQISVEKVK 411


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 33/89 (37%), Positives = 46/89 (51%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G+ LYV  L+ RV +ADLE+ F   G V    +V D  T  S GF FV M + + A   I
Sbjct:     2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTPTPG 125
               LN   ++GR + V +A+    R  + G
Sbjct:    62 AGLNGKEMDGRNLMVNEARPPERRGGSGG 90


>UNIPROTKB|F1M2S4 [details] [associations]
            symbol:F1M2S4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
            ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
        Length = 208

 Score = 128 (50.1 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS + T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:     9 LFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68

Query:   100 NRSVLEGRLITVEKA-KRSRGRTP 122
                V +GR++  ++A  R   R P
Sbjct:    69 PHKV-DGRVVEPKRAVSREDSRRP 91


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 34/92 (36%), Positives = 48/92 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  F   G+V E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
             A    + LN   L+G+ I VE+A +     P+
Sbjct:    62 AKDAARELNGKALDGKPIKVEQATKPSFSAPS 93


>UNIPROTKB|J3KQ82 [details] [associations]
            symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
            ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
            Ensembl:ENST00000454978 Uniprot:J3KQ82
        Length = 459

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 36/97 (37%), Positives = 52/97 (53%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N + L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A  GN +YV  LS  V +  LE  F  +GKV E  ++ D  +  S GF FVT ++ +   
Sbjct:   200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259

Query:    94 RCIKYLNRSVLEGRLITVEKAK 115
               IK L+ + L+GR I V +A+
Sbjct:   260 NAIKSLDGADLDGRQIRVSEAE 281

 Score = 93 (37.8 bits), Expect = 0.00050, P = 0.00050
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V  L   V +A L + F   G V    ++ D  T  S GF FVTM +V   +   +  
Sbjct:    93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152

Query:   100 NRSVLEGRLITV 111
             N   L+GR + V
Sbjct:   153 NGYELDGRPLRV 164


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             ++ P   LYV+GLS R T   L   F   G +   ++V D       GFAF+  ET E A
Sbjct:    72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131

Query:    93 DRCIKYLNRSVLEGRLITVEKAK 115
              + I+ ++   L+GR+I VE+AK
Sbjct:   132 MKAIQGMHGKFLDGRVIFVEEAK 154


>UNIPROTKB|Q15415 [details] [associations]
            symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
            [GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
            MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
            EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
            EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
            RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
            HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
            PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
            DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
            Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
            KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
            CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
            HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
            PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
            NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
            Uniprot:Q15415
        Length = 496

 Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 36/97 (37%), Positives = 52/97 (53%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N + L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T  +   LE +F   G+++E  L+ D  T +S GFAFVT E    
Sbjct:     3 EADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRT 121
             A    + +N   L+G+ I VE+A + +  T
Sbjct:    62 AKDAAREMNGKPLDGKPIKVEQATKPQFET 91


>TAIR|locus:2083810 [details] [associations]
            symbol:PSRP2 "plastid-speciﬁc ribosomal protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
            EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
            RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
            SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
            EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
            KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
            PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
            Genevestigator:Q8VYM4 Uniprot:Q8VYM4
        Length = 253

 Score = 130 (50.8 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 31/75 (41%), Positives = 40/75 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +YV  L+  VT   LE  F  +GKV    +   P T +S GF FVT  + E  +  I  L
Sbjct:   179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238

Query:   100 NRSVLEGRLITVEKA 114
             N S+LEG+ I V KA
Sbjct:   239 NNSLLEGQKIRVNKA 253

 Score = 106 (42.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/96 (29%), Positives = 47/96 (48%)

Query:    31 PDAANPGNN----LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTM 86
             P A +P +     +Y+  +   VTN  L K     G V +  ++ D  +  S  F F TM
Sbjct:    65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124

Query:    87 ETVEGADRCIKYLNRSVLEGRLITVEKAKRSRGRTP 122
             ++VE A+  ++ LN + +EGR I V   ++    +P
Sbjct:   125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP 160


>UNIPROTKB|B7ZMD9 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
            HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
            SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
        Length = 459

 Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>UNIPROTKB|J3KPK3 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
            Ensembl:ENST00000382658 Uniprot:J3KPK3
        Length = 459

 Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 127 (49.8 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+   T   LE+ F   G+V E  +V D  ++ S GF FVT E  E A   +  +
Sbjct:     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRTPTPGHYHG 129
             N   ++GR I V++A K S  R    G Y G
Sbjct:    68 NGKSVDGRQIRVDQAGKSSNDRR---GGYRG 95


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GL+       LE+ F   G+++E  +V D  T+ S GF FVT E  + A   +  +
Sbjct:     7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             N   ++GR I V++A +S G     G Y G
Sbjct:    67 NGKAVDGRQIRVDQAGKSSG--DRRGGYRG 94


>UNIPROTKB|A6NDE4 [details] [associations]
            symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
            family 1 member B" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
            IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
            ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
            PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
            UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
            neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
            InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
            NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
            Genevestigator:A6NDE4 Uniprot:A6NDE4
        Length = 496

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>UNIPROTKB|A6NEQ0 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
            ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
            PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
            Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
            UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
            neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
            GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
            Genevestigator:A6NEQ0 Uniprot:A6NEQ0
        Length = 496

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>UNIPROTKB|P0C7P1 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
            ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
            DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
            Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
            UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
            neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
            OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
            Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
        Length = 496

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>UNIPROTKB|P0DJD3 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
            InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
            EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
            PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
            DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
            Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
            GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
            neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
            Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
            Uniprot:P0DJD3
        Length = 496

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+AK+    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPP 97


>UNIPROTKB|F1LVK5 [details] [associations]
            symbol:F1LVK5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
            Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
        Length = 249

 Score = 129 (50.5 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 33/95 (34%), Positives = 48/95 (50%)

Query:    35 NPGNNLY--VTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             NP  N +  V GLS  +T  DL + F   G V +  +V D ++ +S  FAFV  E ++ A
Sbjct:    82 NPDPNYFLGVFGLSLYITERDLREVFSKYGPVADVSIVYDQQSSQSREFAFVCFENIDDA 141

Query:    93 DRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHY 127
                 ++ N   L+G    V+ +   R  TPTPG Y
Sbjct:   142 KEAKEHANGMELDGCQSRVDFSITKRLHTPTPGIY 176


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 36/108 (33%), Positives = 54/108 (50%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+       LE  FG  G+++E  L+ D  T +S GFAF+T E+   
Sbjct:     3 EADRPGK-LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR---SRGRTPTP-----GHYHGLR 131
             A   ++ +N   L+G+ I V +A +     GR   P     G   GLR
Sbjct:    62 AKAAVRDMNGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRGRSRGLR 109


>TAIR|locus:2042366 [details] [associations]
            symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
            IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
            ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
            PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
            KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
            PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
            Uniprot:Q8RWQ1
        Length = 809

 Score = 123 (48.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 25/68 (36%), Positives = 41/68 (60%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V  L    +  DL+K FG  G+VTE  ++ +P+T++S G AF+   TVE A R +K L
Sbjct:   216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275

Query:   100 NRSVLEGR 107
                ++ G+
Sbjct:   276 KSPMINGK 283

 Score = 38 (18.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:   110 TVEKAKRSRGRTPTP 124
             + ++A  SRGR P P
Sbjct:   527 SAKRASGSRGRRPRP 541


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKRS 117
               +  +N   ++GR I V++A +S
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQAGKS 85


>ZFIN|ZDB-GENE-040426-2647 [details] [associations]
            symbol:sltm "SAFB-like, transcription modulator"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            ZFIN:ZDB-GENE-040426-2647 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
            EMBL:AL935053 IPI:IPI00490957 Ensembl:ENSDART00000123464
            ArrayExpress:E7F7Q8 Bgee:E7F7Q8 Uniprot:E7F7Q8
        Length = 992

 Score = 138 (53.6 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query:    39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
             NL+V+GLS+    ADL+  FG  GKV    +VT+ R+  +  +  VTM +     RCI +
Sbjct:   350 NLWVSGLSSNTKAADLKNLFGKYGKVFSAKVVTNARSPGAKCYGLVTMSSSAEVARCISH 409

Query:    99 LNRSVLEGRLITVEKAK 115
             L+R+ L G+ I+V++ K
Sbjct:   410 LDRTELHGQQISVDRVK 426


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 127 (49.8 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    35 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 94

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    95 PHKV-DGRVVEPKRAV-SREDSQRPG 118


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 125 (49.1 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 31/92 (33%), Positives = 48/92 (52%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    12 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 71

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPGHYHGLR 131
                V +GR++  ++A  S   +  PG Y  ++
Sbjct:    72 PHKV-DGRVVEPKRAV-SIEDSQRPGAYLNMK 101


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 32/92 (34%), Positives = 50/92 (54%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A P  NL+V+GLS R T+  L   F   G+V +  +VTD  +  S GF FV   T+E + 
Sbjct:    52 AEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSA 111

Query:    94 RCIKYLNRSVLEGRLITVEKAK-RSRGRTPTP 124
             + I  ++   L+G +I  E A+ R + ++  P
Sbjct:   112 KGIAGMDGKFLDGWVIFAEYARPREQSQSYQP 143


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 31/94 (32%), Positives = 46/94 (48%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T   LE  F   G +T  H+  +  T  S GF FVT E  + A   ++ +
Sbjct:     7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66

Query:   100 NRSVLEGRLITVEKAKRSRG----RTPTPGHYHG 129
             N   ++GR I V++A +  G    R+   G Y G
Sbjct:    67 NGKSVDGRTIRVDEAGKGGGGGGGRSGGGGSYRG 100


>MGI|MGI:1355299 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
            D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
            "double-stranded DNA binding" evidence=ISO] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
            RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
            expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
            evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
            GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
            EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
            IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
            SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
            PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
            CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
        Length = 301

 Score = 129 (50.5 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     D+ ++ L
Sbjct:    31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-L 89

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:    90 KEHKLDGKLIDPKRAKALKGKEP 112


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 28/87 (32%), Positives = 47/87 (54%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             ++L+V G S  V+   L+K F   G+VT   ++ + RTR+S G+ +V   + E A   ++
Sbjct:    77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136

Query:    98 YLNRSVLEGRLITVEKAKR--SRGRTP 122
              +N    +GR I V+  +   SR R P
Sbjct:   137 AMNGKFFDGRFILVKFGQPGLSRRRRP 163


>UNIPROTKB|Q7ZYE9 [details] [associations]
            symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
            laevis" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
            UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
            GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
            Uniprot:Q7ZYE9
        Length = 324

 Score = 129 (50.5 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query:    32 DAANP---GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88
             D ++P   G  ++V GLS   +  DL+ +F   G+V++C +  DP T  S GF F+  + 
Sbjct:    55 DISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKD 114

Query:    89 VEGADRCIKYLNRSVLEGRLITVEKA 114
              E  D+ +++     L+GRLI  +KA
Sbjct:   115 AESVDKVLEHKEHR-LDGRLIDPKKA 139


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 129 (50.5 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             A+     LYV  L   +T+++L + FG  G V +  +V D  T  S GF FVTM ++E A
Sbjct:   111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query:    93 DRCIKYLNRSVLEGRLITVEKAKRSRG 119
                ++  N S + GR + V   +  RG
Sbjct:   171 KEAMQMFNSSQIGGRTVKVNFPEVPRG 197


>UNIPROTKB|D4ACJ8 [details] [associations]
            symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
            ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
        Length = 268

 Score = 127 (49.8 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
            symbol:rbm38 "RNA binding motif protein 38"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
            HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
            ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
            InParanoid:Q7T2V9 Uniprot:Q7T2V9
        Length = 246

 Score = 126 (49.4 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 31/94 (32%), Positives = 52/94 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    27 IFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKDP 86

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R+P  G+  G+++
Sbjct:    87 N-PIIDGRKANVNLAYLGAKPRSPLTGYSTGVQQ 119


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/83 (36%), Positives = 45/83 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A   +  +
Sbjct:     8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRT 121
             N   ++GR I V++A K S  R+
Sbjct:    68 NGKSVDGRQIRVDQAGKSSENRS 90


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/83 (36%), Positives = 45/83 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A   +  +
Sbjct:     8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRT 121
             N   ++GR I V++A K S  R+
Sbjct:    68 NGKSVDGRQIRVDQAGKSSENRS 90


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/83 (36%), Positives = 45/83 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A   +  +
Sbjct:     8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRT 121
             N   ++GR I V++A K S  R+
Sbjct:    68 NGKSVDGRQIRVDQAGKSSENRS 90


>UNIPROTKB|Q32P51 [details] [associations]
            symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
            A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
            EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
            IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
            UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
            IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
            PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
            Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
            KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
            HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
            HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
            OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
            Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
            Uniprot:Q32P51
        Length = 320

 Score = 128 (50.1 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|P0DJD4 [details] [associations]
            symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
            family 1 member C" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
            CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
            EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
            EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
            GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
            Uniprot:P0DJD4
        Length = 496

 Score = 131 (51.2 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 35/97 (36%), Positives = 51/97 (52%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A +PG  L++ GL+       L+  FG  G ++E  L+ D RT +S GFAF+T E    
Sbjct:     3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTP 124
             A    K +N   L G+ I VE+A++    S GR   P
Sbjct:    61 AKNAAKDMNGKSLHGKAIKVEQAQKPSFQSGGRRRPP 97


>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
            symbol:MAL8P1.83 "eukaryotictranslation
            initiation factor, putative" species:5833 "Plasmodium falciparum"
            [GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
            PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
            KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
            RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
            MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
            KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
            ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
        Length = 266

 Score = 126 (49.4 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 33/86 (38%), Positives = 41/86 (47%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             D  N    + VT LS  V   +L   FG  G +    L     T+ S GFAF+T    E 
Sbjct:   179 DTQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREE 238

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS 117
             A R I+ LNR   E  L++VE AK S
Sbjct:   239 AKRAIEKLNRHGFENLLLSVEWAKPS 264


>UNIPROTKB|Q8IAZ3 [details] [associations]
            symbol:MAL8P1.83 "Eukaryotic translation initiation factor
            3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006412
            "translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
            HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
            ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
            EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
            EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
            Uniprot:Q8IAZ3
        Length = 266

 Score = 126 (49.4 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 33/86 (38%), Positives = 41/86 (47%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             D  N    + VT LS  V   +L   FG  G +    L     T+ S GFAF+T    E 
Sbjct:   179 DTQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREE 238

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRS 117
             A R I+ LNR   E  L++VE AK S
Sbjct:   239 AKRAIEKLNRHGFENLLLSVEWAKPS 264


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 133 (51.9 bits), Expect = 9.7e-08, P = 9.7e-08
 Identities = 33/94 (35%), Positives = 46/94 (48%)

Query:    33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGA 92
             A  P   L++  L    TN  L + F     +    +V DP+T++S G+ FVT   VE A
Sbjct:    32 ATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDA 91

Query:    93 DRCIKYLNRSVLEGRLITVEKAK-RSRGRTPTPG 125
                ++ LN S  EG+ I VE A+ R R    T G
Sbjct:    92 KAALEELNGSTFEGKKIKVEYAQPRHRVVDETVG 125


>UNIPROTKB|F8VXY0 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
            Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
            Uniprot:F8VXY0
        Length = 304

 Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|F8VSB5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
            Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
            Uniprot:F8VSB5
        Length = 306

 Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|F8VRQ1 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
            Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
            Uniprot:F8VRQ1
        Length = 307

 Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>MGI|MGI:1889294 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
            [GO:0006978 "DNA damage response, signal transduction by p53 class
            mediator resulting in transcription of p21 class mediator"
            evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
            "cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
            of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
            GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
            GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
            EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
            IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
            ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
            PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
            Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
            KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
            NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
            GermOnline:ENSMUSG00000027510 Uniprot:Q62176
        Length = 237

 Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     ADR  K  
Sbjct:    34 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDP 93

Query:   100 NRSVLEGRLITVEKA 114
             N  +++GR   V  A
Sbjct:    94 N-PIIDGRKANVNLA 107


>RGD|1308503 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in transcription of p21 class mediator" evidence=IEA]
            [GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
            regulation of cell proliferation" evidence=IEA] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
            IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
            Uniprot:D3ZGE9
        Length = 237

 Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     ADR  K  
Sbjct:    34 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDP 93

Query:   100 NRSVLEGRLITVEKA 114
             N  +++GR   V  A
Sbjct:    94 N-PIIDGRKANVNLA 107


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A+    L+V GLS       LE+ F   G+++E  +V D  T+ S GF FVT E ++ A 
Sbjct:     2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query:    94 RCIKYLNRSVLEGRLITVEKAKR 116
               +  +N   ++GR I V++  R
Sbjct:    62 DAMMAMNGKSVDGRQIRVDQPLR 84


>UNIPROTKB|P09867 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
            GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
            RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
            SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
            GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
            OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|F8W6I7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
            Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
            Uniprot:F8W6I7
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|Q06A94 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
            EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
            SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
            Uniprot:Q06A94
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|A5A6H4 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
            EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
            RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
            UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
            Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
            GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
            CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
            Uniprot:A5A6H4
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|Q28521 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
            ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
            GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
            Uniprot:Q28521
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>MGI|MGI:104820 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
            import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
            EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
            EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
            EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
            EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
            IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
            UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
            IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
            PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
            UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
            Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
            GermOnline:ENSMUSG00000058922 Uniprot:P49312
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>RGD|69234 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
           species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
           evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
           spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
           evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
           [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
           evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
           evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
           evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
           [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
           "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
           "intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
           transport" evidence=IEA] [GO:0051168 "nuclear export"
           evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
           [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
           InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
           SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
           GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
           GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
           GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
           HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
           CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
           UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
           STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
           KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
           Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|Q5I0M7 [details] [associations]
            symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
            UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
            Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
        Length = 320

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>TAIR|locus:2050024 [details] [associations]
            symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
            eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
            IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
            ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
            PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
            KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
            InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
            ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
        Length = 1003

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 32/73 (43%), Positives = 42/73 (57%)

Query:    42 VTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 101
             V+GL   +TNA LE+ F   G V  C LVT+  + E  GFAFV     E  +R I+  N 
Sbjct:    24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83

Query:   102 SVLEGRLITVEKA 114
             S + GR ITV++A
Sbjct:    84 STVGGRRITVKQA 96


>UNIPROTKB|D4A2D2 [details] [associations]
            symbol:D4A2D2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            IPI:IPI00559583 ProteinModelPortal:D4A2D2
            Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
        Length = 262

 Score = 125 (49.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 28/75 (37%), Positives = 41/75 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GL+   T+  L   F   G +TEC ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKA 114
                V +GR++  E+A
Sbjct:    76 PHKV-DGRVVEPERA 89


>UNIPROTKB|F1N2T0 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
            PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
            Uniprot:F1N2T0
        Length = 420

 Score = 129 (50.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     D+ ++ L
Sbjct:   150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-L 208

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:   209 KEHKLDGKLIDPKRAKALKGKEP 231


>UNIPROTKB|E2QRT0 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
            EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
            GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
        Length = 420

 Score = 129 (50.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     D+ ++ L
Sbjct:   150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-L 208

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:   209 KEHKLDGKLIDPKRAKALKGKEP 231


>UNIPROTKB|O14979 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
            RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
            [GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
            of gene expression" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
            GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
            GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
            KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
            EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
            EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
            IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
            UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
            SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
            PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
            Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
            KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
            MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
            OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
            GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
            CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
        Length = 420

 Score = 129 (50.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     D+ ++ L
Sbjct:   150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-L 208

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:   209 KEHKLDGKLIDPKRAKALKGKEP 231


>UNIPROTKB|F8W1S7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
            Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
            Uniprot:F8W1S7
        Length = 330

 Score = 127 (49.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 35/102 (34%), Positives = 50/102 (49%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+       LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKR----SRGRTPTPGHYHG 129
             A    + +N   L+G+ I V +A +    S  R P P    G
Sbjct:    62 AKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRG 103


>UNIPROTKB|F1PJX5 [details] [associations]
            symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
            OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
            Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
        Length = 279

 Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    18 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 75

Query:    91 GADRCIKYLNRSVLEGRLITVEKA 114
              ADR  + LN +++EGR I V  A
Sbjct:    76 DADRAREKLNGTIVEGRKIEVNNA 99


>UNIPROTKB|D6RF44 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
            ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
            ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
        Length = 112

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:    61 EHK-LNGKVIDPKRAKAMKTKEP 82


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKA 114
             N  +++GR   V  A
Sbjct:    73 N-PIIDGRKANVNLA 86


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 34/91 (37%), Positives = 45/91 (49%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GLS       LE  F   G++ E  +V D  T+ S GF FVT E  E A   +  +
Sbjct:     8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRTPTPGHYHG 129
             N   ++GR I V++A K S  R    G Y G
Sbjct:    68 NGKTVDGRQIRVDQAGKSSNDRR---GGYRG 95


>UNIPROTKB|D4A491 [details] [associations]
            symbol:D4A491 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            IPI:IPI00560785 ProteinModelPortal:D4A491
            Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
        Length = 239

 Score = 123 (48.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:     9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPGHY 127
                V  GR++  ++A  SR  +  P  Y
Sbjct:    69 PHKV-NGRVVEPKRAV-SREDSQRPDAY 94

 Score = 103 (41.3 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 31/102 (30%), Positives = 47/102 (46%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PDA      ++V G+        L  +FG  GK     +VTD  + +  GFAFVT +  +
Sbjct:    91 PDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRD 150

Query:    91 GADRCIKYLNRSVLEGRLITVEKA-KRSRGRTPTPGHYHGLR 131
               D+ +     +V  G    V KA    RGR+ + G++ G R
Sbjct:   151 SVDKIVIQKYHTV-NGHNCEVRKAPSNQRGRSGS-GNFGGGR 190


>UNIPROTKB|P09651 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
            "single-stranded RNA binding" evidence=IC] [GO:0005654
            "nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
            [GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
            export" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
            filament cytoskeleton" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
            Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
            Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
            GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
            GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
            EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
            EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
            EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
            IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
            RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
            UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
            PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
            PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
            PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
            PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
            PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
            ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
            MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
            SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
            Ensembl:ENST00000340913 Ensembl:ENST00000546500
            Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
            KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
            GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
            H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
            MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
            InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
            ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
            GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
            CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
            Uniprot:P09651
        Length = 372

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|E2QYP1 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
            NextBio:20853043 Uniprot:E2QYP1
        Length = 373

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>UNIPROTKB|D4ACJ7 [details] [associations]
            symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
            OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
            Uniprot:D4ACJ7
        Length = 373

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    76 PHKV-DGRVVEPKRAV-SREDSQRPG 99


>MGI|MGI:106368 [details] [associations]
            symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C.
            elegans) 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043025 "neuronal cell
            body" evidence=IDA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0097458 "neuron part" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106368 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622 EMBL:CH466558
            GO:GO:0043484 EMBL:AL591075 GO:GO:0000381 eggNOG:NOG258617
            GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 CTD:146713
            EMBL:FJ958310 EMBL:FJ958311 EMBL:AK079086 EMBL:AK160816
            EMBL:AL591514 EMBL:AL591544 EMBL:BC054403 IPI:IPI00222115
            IPI:IPI00408241 IPI:IPI00648836 IPI:IPI00720112 IPI:IPI00894965
            RefSeq:NP_001020102.2 RefSeq:NP_001034256.1 RefSeq:NP_001034257.1
            UniGene:Mm.341103 ProteinModelPortal:Q8BIF2 SMR:Q8BIF2
            IntAct:Q8BIF2 STRING:Q8BIF2 PaxDb:Q8BIF2 PRIDE:Q8BIF2
            Ensembl:ENSMUST00000017576 Ensembl:ENSMUST00000069343
            Ensembl:ENSMUST00000103023 Ensembl:ENSMUST00000106278
            Ensembl:ENSMUST00000117731 Ensembl:ENSMUST00000120061 GeneID:52897
            KEGG:mmu:52897 UCSC:uc007mpo.1 InParanoid:Q8BIF2 OMA:LQASLCR
            NextBio:309687 Bgee:Q8BIF2 Genevestigator:Q8BIF2 Uniprot:Q8BIF2
        Length = 374

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 32/96 (33%), Positives = 47/96 (48%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    92 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 149

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGH 126
              ADR  + LN +++EGR I V  A         PG+
Sbjct:   150 DADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGN 185


>RGD|1560070 [details] [associations]
            symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C. elegans)
            3" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA;ISO] [GO:0003677 "DNA
            binding" evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0043025 "neuronal cell body"
            evidence=IEA;ISO] [GO:0097458 "neuron part" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            RGD:1560070 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003677 GO:GO:0043025 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473948 GO:GO:0000381
            GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
            Pfam:PF12414 OrthoDB:EOG4NVZKS CTD:146713 OMA:LQASLCR
            IPI:IPI00370377 RefSeq:NP_001127970.1 UniGene:Rn.143966
            Ensembl:ENSRNOT00000004524 GeneID:287847 KEGG:rno:287847
            NextBio:627138 Uniprot:D4A2H6
        Length = 375

 Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 32/96 (33%), Positives = 47/96 (48%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    92 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 149

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGH 126
              ADR  + LN +++EGR I V  A         PG+
Sbjct:   150 DADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGN 185


>UNIPROTKB|F1Q3G7 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
            GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
        Length = 384

 Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    37 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 96

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    97 PHKV-DGRVVEPKRAV-SREDSQRPG 120


>UNIPROTKB|Q5ZI72 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
            RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
            ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
            Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
            Uniprot:Q5ZI72
        Length = 301

 Score = 125 (49.1 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     ++ ++ L
Sbjct:    32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE-L 90

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:    91 KEHKLDGKLIDPKRAKALKGKEP 113


>UNIPROTKB|F1M6U1 [details] [associations]
            symbol:F1M6U1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
            Uniprot:F1M6U1
        Length = 252

 Score = 123 (48.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+   GF FVT  TVE  D  +   
Sbjct:     9 LFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNAR 68

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    69 PHKV-DGRVVEPKRAV-SREDSQRPG 92


>UNIPROTKB|A6NFN3 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
            KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
            CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
            IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
            ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
            PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
            Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
            UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
            neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
            NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
            Uniprot:A6NFN3
        Length = 312

 Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    92 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 149

Query:    91 GADRCIKYLNRSVLEGRLITVEKA 114
              ADR  + LN +++EGR I V  A
Sbjct:   150 DADRAREKLNGTIVEGRKIEVNNA 173


>UNIPROTKB|J9PAH3 [details] [associations]
            symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
            EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
            Uniprot:J9PAH3
        Length = 314

 Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    33 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 90

Query:    91 GADRCIKYLNRSVLEGRLITVEKA 114
              ADR  + LN +++EGR I V  A
Sbjct:    91 DADRAREKLNGTIVEGRKIEVNNA 114


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/93 (35%), Positives = 46/93 (49%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRTPTPGHYHGLR 131
             N   L+GR I V+ A K +RG   T G   G R
Sbjct:    68 NGESLDGRQIRVDHAGKSARG---TRGGAFGAR 97


>POMBASE|SPBC4F6.14 [details] [associations]
            symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
            "rRNA processing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
            HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
            PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
            STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
            KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
        Length = 674

 Score = 130 (50.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 30/90 (33%), Positives = 44/90 (48%)

Query:    35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADR 94
             N  + L+V  L+ +    DL  FF   G +    +VT+P T E+ G+ FVT   +E A R
Sbjct:     2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61

Query:    95 CIKYLNRSVLEGRLITVEKAK-RSRGRTPT 123
               K L    L GR++ ++ A  R R    T
Sbjct:    62 AAKELKNKKLHGRILRLDFATPRKRSEVDT 91


>UNIPROTKB|B4DF29 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
            IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
            HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
            EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
            Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
            Bgee:B4DF29 Uniprot:B4DF29
        Length = 325

 Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    92 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 149

Query:    91 GADRCIKYLNRSVLEGRLITVEKA 114
              ADR  + LN +++EGR I V  A
Sbjct:   150 DADRAREKLNGTIVEGRKIEVNNA 173


>UNIPROTKB|H0YA96 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
        Length = 210

 Score = 120 (47.3 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:     3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 62

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:    63 EHK-LNGKVIDPKRAKAMKTKEP 84

 Score = 90 (36.7 bits), Expect = 0.00057, P = 0.00057
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query:    36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95
             P   ++V GLS       + ++FGG G+V    L  D +T +  GF F+T +  E   + 
Sbjct:    84 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 143

Query:    96 I--KYLN 100
             +  KY N
Sbjct:   144 MEKKYHN 150


>UNIPROTKB|F1NCV5 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
            EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
            Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
        Length = 338

 Score = 125 (49.1 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   +  DL ++    G+V +C + TDP T  S GF FV  +     ++ ++ L
Sbjct:    68 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE-L 126

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L+G+LI  ++AK  +G+ P
Sbjct:   127 KEHKLDGKLIDPKRAKALKGKEP 149


>ZFIN|ZDB-GENE-040628-1 [details] [associations]
            symbol:rbm24a "RNA binding motif protein 24a"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003228
            "atrial cardiac muscle tissue development" evidence=IMP]
            [GO:0072358 "cardiovascular system development" evidence=IGI]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
            GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
            ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
            Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
            ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
        Length = 230

 Score = 121 (47.7 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T++ L K+F   G++ E  ++TD +T +S G+ FVTM     ADR  K  
Sbjct:    13 IFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGL 130
             N  +++GR   V  A   ++ R   PG   G+
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRVMQPGFTFGV 103


>UNIPROTKB|F1NCV3 [details] [associations]
            symbol:SRSF5A "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
            IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
            Uniprot:F1NCV3
        Length = 163

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/84 (38%), Positives = 41/84 (48%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G  ++V  LS+R    D+EKFF G G++ E HL          GF FV  E    AD  I
Sbjct:     3 GCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKN--------GFGFVEFEDHRDADDAI 54

Query:    97 KYLNRSVLEGRLITVEKAKRSRGR 120
               LN   L    +T+E A+  RGR
Sbjct:    55 YELNGKELCDERVTIEHARARRGR 78


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRG 119
             N   L+GR I V+ A K +RG
Sbjct:    68 NGESLDGRQIRVDHAGKSARG 88


>UNIPROTKB|A5GFN7 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
            GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
            ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
            ArrayExpress:A5GFN7 Uniprot:A5GFN7
        Length = 193

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    36 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 95

Query:   100 NRSVLEGRLITVEKA 114
             N ++ +GR   V  A
Sbjct:    96 NPNI-DGRKANVNLA 109


>ZFIN|ZDB-GENE-070424-97 [details] [associations]
            symbol:hnrnpd "heterogeneous nuclear
            ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
            IPI:IPI00512852 Ensembl:ENSDART00000101414
            Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
        Length = 314

 Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/83 (34%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  ++ I   
Sbjct:    56 MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQK 115

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  +KAK  + + P
Sbjct:   116 EHK-LNGKVIDPKKAKAMKTKEP 137


>UNIPROTKB|J3QRF4 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
            Pfam:PF12414 EMBL:AC021534 EMBL:AC073624 HGNC:HGNC:27097
            OMA:LQASLCR EMBL:AC020689 EMBL:AC027824 EMBL:AC055858 EMBL:AC142247
            ProteinModelPortal:J3QRF4 Ensembl:ENST00000583458 Uniprot:J3QRF4
        Length = 358

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:    91 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 148

Query:    91 GADRCIKYLNRSVLEGRLITVEKA 114
              ADR  + LN +++EGR I V  A
Sbjct:   149 DADRAREKLNGTIVEGRKIEVNNA 172


>UNIPROTKB|A6QPJ1 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
            EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
            RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
            Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
            NextBio:20873922 Uniprot:A6QPJ1
        Length = 236

 Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 31/94 (32%), Positives = 51/94 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F   G++ E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|Q9BX46 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
            EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
            RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
            UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
            IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
            DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
            Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
            UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
            HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
            InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
            GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
            CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
        Length = 236

 Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 31/94 (32%), Positives = 51/94 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F   G++ E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|O43347 [details] [associations]
            symbol:MSI1 "RNA-binding protein Musashi homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
            hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=TAS] [GO:0007399 "nervous system development"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
            EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
            UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
            IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
            PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
            GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
            GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
            neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
            OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
            Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
            GermOnline:ENSG00000135097 Uniprot:O43347
        Length = 362

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PD+ +    +++ GLS + T   L ++FG  G+V EC ++ DP T+ S GF FVT     
Sbjct:    13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

Query:    91 GADRCIKYLNRSVLEGRLI 109
             G D+ +   +R  L+ + I
Sbjct:    73 GVDKVLAQ-SRHELDSKTI 90

 Score = 101 (40.6 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 24/93 (25%), Positives = 46/93 (49%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        ++V GLS   T  D++++F   GKV +  L+ D  T    GF FVT E+ +
Sbjct:   102 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
               ++  + ++   +  +++  +KA+     +PT
Sbjct:   162 IVEKVCE-IHFHEINNKMVECKKAQPKEVMSPT 193


>MGI|MGI:107376 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
            "response to hormone stimulus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
            GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
            EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
            RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
            PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
            ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
            PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
            Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
            UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
            EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
            Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
        Length = 362

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PD+ +    +++ GLS + T   L ++FG  G+V EC ++ DP T+ S GF FVT     
Sbjct:    13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

Query:    91 GADRCIKYLNRSVLEGRLI 109
             G D+ +   +R  L+ + I
Sbjct:    73 GVDKVLAQ-SRHELDSKTI 90

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/93 (25%), Positives = 45/93 (48%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        ++V GLS   T  D++ +F   GKV +  L+ D  T    GF FVT E+ +
Sbjct:   102 PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
               ++  + ++   +  +++  +KA+     +PT
Sbjct:   162 IVEKVCE-IHFHEINNKMVECKKAQPKEVMSPT 193


>RGD|628778 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
            evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
            evidence=IMP] [GO:0030855 "epithelial cell differentiation"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PD+ +    +++ GLS + T   L ++FG  G+V EC ++ DP T+ S GF FVT     
Sbjct:    13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

Query:    91 GADRCIKYLNRSVLEGRLI 109
             G D+ +   +R  L+ + I
Sbjct:    73 GVDKVLAQ-SRHELDSKTI 90

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/93 (25%), Positives = 45/93 (48%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        ++V GLS   T  D++ +F   GKV +  L+ D  T    GF FVT E+ +
Sbjct:   102 PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
               ++  + ++   +  +++  +KA+     +PT
Sbjct:   162 IVEKVCE-IHFHEINNKMVECKKAQPKEVMSPT 193


>UNIPROTKB|Q8K3P4 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PD+ +    +++ GLS + T   L ++FG  G+V EC ++ DP T+ S GF FVT     
Sbjct:    13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

Query:    91 GADRCIKYLNRSVLEGRLI 109
             G D+ +   +R  L+ + I
Sbjct:    73 GVDKVLAQ-SRHELDSKTI 90

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/93 (25%), Positives = 45/93 (48%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        ++V GLS   T  D++ +F   GKV +  L+ D  T    GF FVT E+ +
Sbjct:   102 PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
               ++  + ++   +  +++  +KA+     +PT
Sbjct:   162 IVEKVCE-IHFHEINNKMVECKKAQPKEVMSPT 193


>UNIPROTKB|E2RK48 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
            RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
            KEGG:cfa:611488 Uniprot:E2RK48
        Length = 362

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             PD+ +    +++ GLS + T   L ++FG  G+V EC ++ DP T+ S GF FVT     
Sbjct:    13 PDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

Query:    91 GADRCIKYLNRSVLEGRLI 109
             G D+ +   +R  L+ + I
Sbjct:    73 GVDKVLAQ-SRHELDSKTI 90

 Score = 93 (37.8 bits), Expect = 0.00073, P = 0.00073
 Identities = 23/93 (24%), Positives = 45/93 (48%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        ++V GLS   T  D++++F    KV +  L+ D  T    GF FVT E+ +
Sbjct:   102 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESED 161

Query:    91 GADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
               ++  + ++   +  +++  +KA+     +PT
Sbjct:   162 IVEKVCE-IHFHEINNKMVECKKAQPKEVMSPT 193


>UNIPROTKB|D6RAF8 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
            IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
            Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
            Uniprot:D6RAF8
        Length = 221

 Score = 120 (47.3 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:    99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:   159 EHK-LNGKVIDPKRAKAMKTKEP 180


>UNIPROTKB|F1LZL9 [details] [associations]
            symbol:F1LZL9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
            Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
        Length = 247

 Score = 121 (47.7 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 31/93 (33%), Positives = 46/93 (49%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T  +    F   G +T+C +  DP T+ S GF FVT  TVE  D  +   
Sbjct:     2 LFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNAR 61

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPGHYHGLRE 132
                V + R++   +A  SR  +  PG   G++E
Sbjct:    62 PHKV-DARVVEPNRAV-SREDSQRPGFVCGIKE 92


>UNIPROTKB|J3KQA8 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
        Length = 102

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLI 109
                V +GR++
Sbjct:    76 PHKV-DGRVV 84


>UNIPROTKB|E1BVJ8 [details] [associations]
            symbol:SRSF5A "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
            IPI:IPI00823174 ProteinModelPortal:E1BVJ8
            Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
            Uniprot:E1BVJ8
        Length = 254

 Score = 121 (47.7 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 32/85 (37%), Positives = 44/85 (51%)

Query:    37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
             G  ++V  LS+R    D+EKFF G G++ E HL          GF FV  E    AD  I
Sbjct:     3 GCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKN--------GFGFVEFEDHRDADDAI 54

Query:    97 KYLN-RSVLEGRLITVEKAKRSRGR 120
               LN + + + R +T+E A+  RGR
Sbjct:    55 YELNGKELCDERRVTIEHARARRGR 79


>UNIPROTKB|F1RUJ2 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
            EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
        Length = 254

 Score = 121 (47.7 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 31/94 (32%), Positives = 51/94 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F   G++ E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    31 IFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 90

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    91 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 123


>UNIPROTKB|G5E5V7 [details] [associations]
            symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
            Uniprot:G5E5V7
        Length = 319

 Score = 123 (48.4 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 31/86 (36%), Positives = 47/86 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L   F   G +T+C +V DP T+ S GF FVT  TVE  D  +   
Sbjct:    25 LFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAMNAR 83

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
              +  ++GR++  ++A  SR  +  PG
Sbjct:    84 PQK-MDGRVVEPKRAV-SREDSQRPG 107


>UNIPROTKB|F1P5I0 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
        Length = 288

 Score = 122 (48.0 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L + F   G +T+C ++ DP+T+ S GF FVT   VE  D  +   
Sbjct:    11 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 70

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    71 PHKV-DGRVVEPKRAV-SREDSVKPG 94


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    36 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 95

Query:   100 NRSVLEGRLITVEKA 114
             N  +++GR   V  A
Sbjct:    96 N-PIIDGRKANVNLA 109


>UNIPROTKB|F1N700 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0043025 "neuronal cell body" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381
            GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
            OMA:LQASLCR EMBL:DAAA02049469 EMBL:DAAA02049462 EMBL:DAAA02049463
            EMBL:DAAA02049464 EMBL:DAAA02049465 EMBL:DAAA02049466
            EMBL:DAAA02049467 EMBL:DAAA02049468 IPI:IPI00708068
            Ensembl:ENSBTAT00000008240 Uniprot:F1N700
        Length = 432

 Score = 125 (49.1 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query:    31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90
             P        L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT ET  
Sbjct:   163 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFETSS 220

Query:    91 GADRCIKYLNRSVLEGRLITVEKA 114
              ADR  + LN +++EGR I V  A
Sbjct:   221 DADRAREKLNGTIVEGRKIEVNNA 244


>UNIPROTKB|F1SA35 [details] [associations]
            symbol:LOC100737421 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
            Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
            OMA:STFGNIV Uniprot:F1SA35
        Length = 349

 Score = 123 (48.4 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 27/95 (28%), Positives = 52/95 (54%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             + L++ GL +R T   L  ++   GK+T+C ++ DP  + S GF FVT  +V   D  + 
Sbjct:    21 HKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMA 80

Query:    98 YLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLRE 132
                 SV +G+++  ++A  +R  +  PG +  +++
Sbjct:    81 ARPHSV-DGKVVDPKRAV-AREESEKPGAHLAVKK 113


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 122 (48.0 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L + F   G +T+C ++ DP+T+ S GF FVT   VE  D  +   
Sbjct:    23 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 82

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    83 PHKV-DGRVVEPKRAV-SREDSVKPG 106


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRG 119
             N   L+GR I V+ A K +RG
Sbjct:    68 NGESLDGRQIRVDHAGKSARG 88


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRG 119
             N   L+GR I V+ A K +RG
Sbjct:    68 NGESLDGRQIRVDHAGKSARG 88


>UNIPROTKB|E1BTK3 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
            RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
            Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
            NextBio:20821039 Uniprot:E1BTK3
        Length = 216

 Score = 118 (46.6 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 27/72 (37%), Positives = 39/72 (54%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             + +YV+ L   +TN DL + F   GKV +  ++ D  TR+S G AF+     E A  C +
Sbjct:    10 STVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSR 69

Query:    98 YLNRSVLEGRLI 109
              LN   L GR+I
Sbjct:    70 ALNNKQLFGRVI 81


>UNIPROTKB|Q5ZIH1 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
            EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
            STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
            KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
        Length = 257

 Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:    61 EHK-LNGKVIDPKRAKAMKTKEP 82


>MGI|MGI:3610364 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
            EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
            UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
            Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
            UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
        Length = 236

 Score = 119 (46.9 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>RGD|1584029 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA;ISO]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
            OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
            UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
            Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
            NextBio:740266 Uniprot:D3ZLP6
        Length = 236

 Score = 119 (46.9 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|F1NCW4 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
            IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
            Uniprot:F1NCW4
        Length = 258

 Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:     2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:    62 EHK-LNGKVIDPKRAKAMKTKEP 83


>UNIPROTKB|H0Y8G5 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
        Length = 261

 Score = 120 (47.3 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:    32 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 91

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:    92 EHK-LNGKVIDPKRAKAMKTKEP 113

 Score = 90 (36.7 bits), Expect = 0.00089, P = 0.00089
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query:    36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95
             P   ++V GLS       + ++FGG G+V    L  D +T +  GF F+T +  E   + 
Sbjct:   113 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 172

Query:    96 I--KYLN 100
             +  KY N
Sbjct:   173 MEKKYHN 179


>TAIR|locus:2075860 [details] [associations]
            symbol:U11/U12-31K "U11/U12-31K" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0051302
            "regulation of cell division" evidence=IMP] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
            GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
            GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
            EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
            ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
            EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
            TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
            ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
        Length = 261

 Score = 120 (47.3 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             + LYV+ L   +TN+D+   F   GKV    ++ D  TR+S G AFV   + E A +  +
Sbjct:    57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query:    98 YLNRSVLEGRLITVEKAKRSRGR 120
              ++  +L GR +TV  A    GR
Sbjct:   117 SMDAKILNGRKLTVSIAA-DNGR 138


>DICTYBASE|DDB_G0278349 [details] [associations]
            symbol:tra2 "putative transformer-2 protein"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
            GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
            RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
            EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
            OMA:GIHPRLT Uniprot:Q54Y98
        Length = 326

 Score = 122 (48.0 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 32/98 (32%), Positives = 45/98 (45%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             + A+P N L V GL+ +    DL+  F   GK+    L+ D +T  S  F FV  E  E 
Sbjct:   107 NTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKED 166

Query:    92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
             A R  +      L G+ I  + +   +   PTPG Y G
Sbjct:   167 AVRAKEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFG 204


>UNIPROTKB|F1M6C7 [details] [associations]
            symbol:F1M6C7 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 IPI:IPI00370270
            Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
        Length = 273

 Score = 120 (47.3 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 31/93 (33%), Positives = 48/93 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS + TN  L   F     +T+C  + DP T+ S GF FVT  TVE  D  +   
Sbjct:     7 LFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNAR 66

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPGHYHGLRE 132
                V +G  +  ++A  SR  + +PG +  ++E
Sbjct:    67 PHKV-DGSFVEPKRAV-SREDSQSPGAHLTVKE 97


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 30/91 (32%), Positives = 44/91 (48%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRTPTPGHYHG 129
             N   L+GR I V+ A K +RG        HG
Sbjct:    68 NGKSLDGRQIRVDHAGKLARGTRGCAFRAHG 98


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRG 119
             N   L+GR I V+ A K +RG
Sbjct:    68 NGESLDGRQIRVDHAGKSARG 88


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRG 119
             N   L+GR I V+ A K +RG
Sbjct:    68 NGESLDGRQIRVDHAGKSARG 88


>WB|WBGene00003423 [details] [associations]
            symbol:msi-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
            GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
            PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
            ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
            EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
            CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
            Uniprot:G5EFS2
        Length = 320

 Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 30/92 (32%), Positives = 51/92 (55%)

Query:    35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADR 94
             +PG  +++ GLS + T  +L  +FG  G+V EC ++ DP T+ + GF F+T       D+
Sbjct:    43 DPGK-MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101

Query:    95 CIKYLNRS-VLEGRLITVEKA--KRSRGRTPT 123
              +   NR   L+G+ I  + A  KR++ +  T
Sbjct:   102 VLN--NREHELDGKKIDPKVAFPKRTQAKLVT 131

 Score = 105 (42.0 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 23/76 (30%), Positives = 45/76 (59%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  D++++F   GKV +  L+ D  T+   GF FVT ++ E AD+  + +
Sbjct:   136 VFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE-I 194

Query:   100 NRSVLEGRLITVEKAK 115
             +   + G+++  +KA+
Sbjct:   195 HFHEINGKMVECKKAQ 210


>UNIPROTKB|F1M5L3 [details] [associations]
            symbol:F1M5L3 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
            EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
            Uniprot:F1M5L3
        Length = 364

 Score = 122 (48.0 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L + F   G +T+C ++ DP+T+ S GF FVT   VE  D  +   
Sbjct:    38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    98 PHKV-DGRVVEPKRAV-SREDSVKPG 121


>UNIPROTKB|F1M117 [details] [associations]
            symbol:F1M117 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
            EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
            Uniprot:F1M117
        Length = 366

 Score = 122 (48.0 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L + F   G +T+C ++ DP+T+ S GF FVT   VE  D  +   
Sbjct:    38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    98 PHKV-DGRVVEPKRAV-SREDSVKPG 121


>UNIPROTKB|F1NCI5 [details] [associations]
            symbol:HNRNPA0 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
            response" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
            [GO:0032496 "response to lipopolysaccharide" evidence=IEA]
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
            GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
            IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
        Length = 328

 Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GL+ + T A L + F   G +T+C +V +P+T+ S  F FVT   VE AD  +   
Sbjct:    30 LFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAAS 89

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
               +V +G  + +++A  SR  +  PG
Sbjct:    90 PHAV-DGNSVELKRAV-SREDSAKPG 113


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    36 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 95

Query:   100 NRSVLEGRLITVEKA 114
             N ++ +GR   V  A
Sbjct:    96 NPNI-DGRKANVNLA 109


>UNIPROTKB|A5GFN8 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
            HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
            CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
            SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
            GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
        Length = 239

 Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T+A L K+F G G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    36 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 95

Query:   100 NRSVLEGRLITVEKA 114
             N ++ +GR   V  A
Sbjct:    96 NPNI-DGRKANVNLA 109


>UNIPROTKB|E1BZE6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00812068 ProteinModelPortal:E1BZE6
            Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
        Length = 380

 Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++ GLS   T+  L + F   G +T+C ++ DP+T+ S GF FVT   VE  D  +   
Sbjct:    35 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 94

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    95 PHKV-DGRVVEPKRAV-SREDSVKPG 118


>WB|WBGene00000890 [details] [associations]
            symbol:sig-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
            "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
            [GO:0006457 "protein folding" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0040007
            GO:GO:0006457 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0040035 GO:GO:0003755 SUPFAM:SSF50891
            GO:GO:0000413 GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS
            EMBL:Z97628 EMBL:Z81080 PIR:T22008 RefSeq:NP_492343.2 HSSP:Q27450
            ProteinModelPortal:G5EEW6 SMR:G5EEW6 PRIDE:G5EEW6
            EnsemblMetazoa:F39H2.2a GeneID:172664 KEGG:cel:CELE_F39H2.2
            CTD:172664 WormBase:F39H2.2a NextBio:876477 Uniprot:G5EEW6
        Length = 427

 Score = 109 (43.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
 Identities = 23/81 (28%), Positives = 42/81 (51%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             D   P N L+V  L+   T+ DLE  F   GK+  C +V D R+ +S  +AF+  +  + 
Sbjct:   235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294

Query:    92 ADRCIKYLNRSVLEGRLITVE 112
              ++    ++  +++ R I V+
Sbjct:   295 CEQAFFKMDNVLIDDRRIHVD 315

 Score = 34 (17.0 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query:   113 KAKRSRGRTPTP 124
             + KRS  R+P+P
Sbjct:   347 EVKRSHQRSPSP 358


>UNIPROTKB|F1M460 [details] [associations]
            symbol:F1M460 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
            ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
            ArrayExpress:F1M460 Uniprot:F1M460
        Length = 224

 Score = 117 (46.2 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L + GLS   T+  L + F   G +T+C ++ DP+T+ S GF FVT   VE  D  +   
Sbjct:    10 LLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCAR 69

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
                V +GR++  ++A  SR  +  PG
Sbjct:    70 PHKV-DGRVVEPKRAV-SREDSVKPG 93


>UNIPROTKB|B4DTC3 [details] [associations]
            symbol:HNRNPD "cDNA FLJ54150, highly similar to
            Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
            UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
            Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
            Ensembl:ENST00000543098 Uniprot:B4DTC3
        Length = 303

 Score = 120 (47.3 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:    47 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 106

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:   107 EHK-LNGKVIDPKRAKAMKTKEP 128


>FB|FBgn0263396 [details] [associations]
            symbol:sqd "squid" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0008069 "dorsal/ventral axis specification, ovarian follicular
            epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
            migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
            [GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
            [GO:0017148 "negative regulation of translation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
            "dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
            "RNA export from nucleus" evidence=TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
            evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
            evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
            involved in germarium-derived egg chamber formation" evidence=IMP]
            [GO:0016325 "oocyte microtubule cytoskeleton organization"
            evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
            evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
            specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
            localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
            GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
            GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
            GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
            GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
            EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
            EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
            PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
            RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
            UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
            MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
            EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
            CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
            OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
            GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
            Uniprot:Q08473
        Length = 344

 Score = 121 (47.7 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GLS   T  +L   FG  G++   ++ TDP+T  S GFAF+     E  D+ +   
Sbjct:    58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSAA 116

Query:   100 NRSVLEGRLITVEKAKRSRGR 120
             +  ++  + +  +KAK   G+
Sbjct:   117 DEHIINSKKVDPKKAKARHGK 137


>UNIPROTKB|A5D9H5 [details] [associations]
            symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
            Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
            RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
            Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
            NextBio:20874604 Uniprot:A5D9H5
        Length = 306

 Score = 120 (47.3 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:    99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158

Query:   100 NRSVLEGRLITVEKAKRSRGRTP 122
                 L G++I  ++AK  + + P
Sbjct:   159 EHK-LNGKVIDPKRAKAMKTKEP 180


>UNIPROTKB|D6RBQ9 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
            ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
            ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
        Length = 155

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             +++ GLS   T  DL+ +F   G+V +C L  DP T  S GF FV  +  E  D+ +   
Sbjct:    80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139

Query:   100 NRSVLEGRLITVEKAK 115
                 L G++I  ++AK
Sbjct:   140 EHK-LNGKVIDPKRAK 154


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/91 (35%), Positives = 42/91 (46%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G + E  +V D  TR S GF F+T    E A   ++  
Sbjct:     8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67

Query:   100 NRSVLEGRLITVEKA-KRSRGRTPTPGHYHG 129
             N   L+GR I V+ A K +RG        HG
Sbjct:    68 NGESLDGRQIHVDHAGKSARGTRGGAFEAHG 98


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:    41 YVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100
             +V GL+    + DL++ F   G V +  ++ D  +  S GF FVT +  +     I+ +N
Sbjct:     9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query:   101 RSVLEGRLITVEKAKRSRG 119
                L+GR+ITV +A+ SRG
Sbjct:    69 GKELDGRVITVNEAQ-SRG 86


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             + L++ GLS   T   L + F   G+V E  +V D  +  S GF FVT  + + A + + 
Sbjct:    34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93

Query:    98 YLNRSVLEGRLITVE--KAKRSRG 119
               N   L GR I V+  KAK+S G
Sbjct:    94 EFNGQQLNGRTIFVDYAKAKQSLG 117


>ZFIN|ZDB-GENE-050306-36 [details] [associations]
            symbol:zgc:110796 "zgc:110796" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
            GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
            IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
            STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
            KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
            OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
        Length = 94

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 25/79 (31%), Positives = 44/79 (55%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             D+ +    +++ GLS + T   L+++F   G+V EC ++ DP T+ S GF FVT     G
Sbjct:    16 DSPHDPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTG 75

Query:    92 ADRCIKYLNRSVLEGRLIT 110
              D+ +   NR  L+ + ++
Sbjct:    76 VDKVLAQ-NRHELDSKTVS 93


>UNIPROTKB|D4AD23 [details] [associations]
            symbol:D4AD23 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
            ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
        Length = 313

 Score = 120 (47.3 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L++  LS   T+  L   F   G +T+C ++ DP T+ S GF FVT  TVE  D  +   
Sbjct:    16 LFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75

Query:   100 NRSVLEGRLITVEKAKRSRGRTPTPG 125
              + V  GR++  ++A  SR  +  PG
Sbjct:    76 PQKV-NGRVVEPKRAV-SREDSQRPG 99


>ZFIN|ZDB-GENE-040923-2 [details] [associations]
            symbol:rbfox1l "RNA binding protein, fox-1 homolog
            (C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
            development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
            development" evidence=IGI] [GO:0008380 "RNA splicing"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
            PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
            GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
            GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
            EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
            ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
            Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
            InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
            ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
        Length = 382

 Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 30/81 (37%), Positives = 45/81 (55%)

Query:    34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGAD 93
             A P   L+V+ +  R  + DL + FG  GK+ +  ++ + R   S GF FVT E+   AD
Sbjct:   144 AQP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFESAVEAD 200

Query:    94 RCIKYLNRSVLEGRLITVEKA 114
             R  + LN +++EGR I V  A
Sbjct:   201 RAREKLNGTIVEGRKIEVNNA 221


>UNIPROTKB|Q9I8B3 [details] [associations]
            symbol:rbm24-b "RNA-binding protein 24-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=ISS]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
            EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
            ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
            CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
        Length = 224

 Score = 116 (45.9 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 30/94 (31%), Positives = 50/94 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T++ L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|K7GKR9 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
        Length = 196

 Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 27/73 (36%), Positives = 39/73 (53%)

Query:    32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
             +A  PG  L++ GL+T      LE  FG  G++ E  L+ D  T +S GFAFVT E+   
Sbjct:     3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query:    92 ADRCIKYLNRSVL 104
             A    + +N  +L
Sbjct:    62 AKDAARDMNGKLL 74


>UNIPROTKB|Q5ZMA3 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
            IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
            ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
            KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
        Length = 225

 Score = 116 (45.9 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 30/94 (31%), Positives = 50/94 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T++ L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|Q6GQD3 [details] [associations]
            symbol:rbm24-a "RNA-binding protein 24-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=IMP]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
            UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
            GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
            HOVERGEN:HBG108399 Uniprot:Q6GQD3
        Length = 225

 Score = 116 (45.9 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 30/94 (31%), Positives = 50/94 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T++ L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|Q6P8A7 [details] [associations]
            symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
            evidence=ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
            HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
            RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
            SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
            Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
            Bgee:Q6P8A7 Uniprot:Q6P8A7
        Length = 226

 Score = 116 (45.9 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 30/94 (31%), Positives = 50/94 (53%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             ++V GL    T++ L K+F   G + E  ++TD +T +S G+ FVTM     A+R  K  
Sbjct:    13 IFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query:   100 NRSVLEGRLITVEKAKR-SRGRTPTPGHYHGLRE 132
             N  +++GR   V  A   ++ R   PG   G+++
Sbjct:    73 N-PIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQ 105


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
             L+V GL+       LE  F   G ++E  +V D  T+ S GF F+T    E A   ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67

Query:   100 NRSVLEGRLITVEKA-KRSRG 119
             N   L+GR I V+ A K +RG
Sbjct:    68 NGESLDGRQIRVDHAGKSARG 88


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/95 (29%), Positives = 50/95 (52%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDP-RTRESCGFAFVTMETVEGADRCI 96
             + L+V G+S   T   L + F   G+V +  ++ D  R R   GFA+VT  + E A++ +
Sbjct:    21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPK-GFAYVTFSSKEEAEKAL 79

Query:    97 KYLNRSVLEGRLITVEKAKRSRGRTPT--PGHYHG 129
               LN  +++GR++ ++  K ++   P   P H  G
Sbjct:    80 LELNAQLVDGRVVILDTTKAAKHNPPDTKPNHAGG 114


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97
             + L+V GLS    ++ L++ F   G+VTE  ++ D  T  S GF FV+    + A+  IK
Sbjct:    35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94

Query:    98 YLNRSVLEGRLITVEKA-KRS 117
              ++   L GR I V  A +RS
Sbjct:    95 EMDGKELNGRQIRVNLATERS 115


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 31/89 (34%), Positives = 44/89 (49%)

Query:    41 YVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100
             +V GL+    +  LE  F   G V +  ++ D  T  S GF FVT +  +     I+ +N
Sbjct:    11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query:   101 RSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
                L+GR ITV +A+ SRG     GH  G
Sbjct:    71 GQDLDGRSITVNEAQ-SRGSGGGGGHRGG 98

WARNING:  HSPs involving 675 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       113   0.00091  102 3  11 22  0.49    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  925
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.11u 0.08s 13.19t   Elapsed:  00:00:01
  Total cpu time:  13.12u 0.09s 13.21t   Elapsed:  00:00:01
  Start:  Fri May 10 00:45:06 2013   End:  Fri May 10 00:45:07 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with SR45a SR45a SR45a AT1G07350	protein from Arabidopsis thaliana	2.0e-31
BLAST match view associations BLAST with DDB_G0292698 DDB_G0292698 DDB_G0292698 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	1.2e-17
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	3.9e-12
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	6.6e-12
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Canis lupus familiaris	9.4e-12
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Canis lupus familiaris	9.5e-12
BLAST match view associations BLAST with Safb2 Safb2 Safb2 scaffold attachment factor B2	protein from Mus musculus	9.9e-12
BLAST match view associations BLAST with H9KZ12 H9KZ12 H9KZ12 Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with safb safb safb scaffold attachment factor B	gene_product from Danio rerio	1.1e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Gallus gallus	1.5e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Gallus gallus	2.3e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Sus scrofa	2.5e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Sus scrofa	2.6e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	2.8e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A cDNA FLJ50689, highly similar to Transformer-2 protein homolog	protein from Homo sapiens	2.8e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Scaffold attachment factor B2	protein from Homo sapiens	4.1e-11
BLAST match view associations BLAST with SAFB2 SAFB2 SAFB2 Uncharacterized protein	protein from Bos taurus	4.1e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Bos taurus	5.0e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Canis lupus familiaris	5.0e-11
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	5.0e-11
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	protein from Mus musculus	5.0e-11
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	gene from Rattus norvegicus	5.0e-11
BLAST match view associations BLAST with Safb Safb Safb scaffold attachment factor B	gene from Rattus norvegicus	5.1e-11
BLAST match view associations BLAST with tra2a tra2a tra2a transformer-2 alpha	gene_product from Danio rerio	5.5e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Canis lupus familiaris	5.6e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A	protein from Sus scrofa	5.7e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Bos taurus	5.8e-11
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	protein from Mus musculus	5.8e-11
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	5.9e-11
BLAST match view associations BLAST with Tra2a Tra2a Tra2a transformer 2 alpha homolog (Drosophila)	gene from Rattus norvegicus	5.9e-11
BLAST match view associations BLAST with Safb Safb Safb scaffold attachment factor B	protein from Mus musculus	8.5e-11
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Uncharacterized protein	protein from Sus scrofa	1.1e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Uncharacterized protein	protein from Bos taurus	1.3e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.3e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Scaffold attachment factor B1	protein from Homo sapiens	1.3e-10
BLAST match view associations BLAST with SAFB SAFB SAFB SAFB protein	protein from Homo sapiens	1.3e-10
BLAST match view associations BLAST with LOC787645 LOC787645 LOC787645 Uncharacterized protein	protein from Bos taurus	1.5e-10
BLAST match view associations BLAST with SAFB SAFB SAFB Uncharacterized protein	protein from Canis lupus familiaris	1.6e-10
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	5.2e-10
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	5.2e-10
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Sus scrofa	5.8e-10
BLAST match view associations BLAST with SLTM SLTM SLTM SAFB-like transcription modulator	protein from Homo sapiens	7.0e-10
BLAST match view associations BLAST with Saf-B Saf-B Saf-B Scaffold attachment factor B	protein from Drosophila melanogaster	8.2e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	8.4e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	8.4e-10
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.8e-09
BLAST match view associations BLAST with rsp-8 rsp-8 rsp-8	gene from Caenorhabditis elegans	1.8e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	2.0e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	2.0e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Canis lupus familiaris	2.3e-09
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Bos taurus	2.3e-09
BLAST match view associations BLAST with SLTM SLTM SLTM SAFB-like transcription modulator	protein from Homo sapiens	2.3e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.7e-09
BLAST match view associations BLAST with Sltm Sltm Sltm SAFB-like, transcription modulator	protein from Mus musculus	3.0e-09
BLAST match view associations BLAST with AtRZ-1c AtRZ-1c AtRZ-1c AT5G04280	protein from Arabidopsis thaliana	3.0e-09
BLAST match view associations BLAST with Hnrpdl Hnrpdl Hnrpdl heterogeneous nuclear ribonucleoprotein D-like	gene from Rattus norvegicus	3.3e-09
BLAST match view associations BLAST with AtRZ-1b AtRZ-1b AtRZ-1b AT1G60650	protein from Arabidopsis thaliana	3.3e-09
BLAST match view associations BLAST with tra2b tra2b tra2b transformer 2 beta homolog (Drosophila)	gene_product from Danio rerio	3.7e-09
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	3.9e-09
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	3.9e-09
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	3.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	3.9e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	4.2e-09
BLAST match view associations BLAST with SC35 SC35 SC35 AT5G64200	protein from Arabidopsis thaliana	4.3e-09
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	4.7e-09
BLAST match view associations BLAST with Rbmxrtl Rbmxrtl Rbmxrtl RNA binding motif protein, X chromosome retrogene-like	gene from Rattus norvegicus	5.0e-09
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X-linked-like 1	gene from Rattus norvegicus	5.0e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	5.8e-09
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	5.9e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	6.3e-09
BLAST match view associations BLAST with hnrpdl hnrpdl hnrpdl heterogeneous nuclear ribonucleoprotein D-like	gene_product from Danio rerio	9.5e-09
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	9.6e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.2e-08
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	1.3e-08
BLAST match view associations BLAST with SLTM SLTM SLTM Uncharacterized protein	protein from Gallus gallus	1.6e-08
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	1.6e-08
BLAST match view associations BLAST with F1M2S4 F1M2S4 F1M2S4 Uncharacterized protein	protein from Rattus norvegicus	2.1e-08
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	2.1e-08
BLAST match view associations BLAST with RBMY1J RBMY1J RBMY1J RNA-binding motif protein, Y chromosome, family 1 member F/J	protein from Homo sapiens	2.3e-08
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	2.5e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.6e-08
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-08