BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028972
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADR 94
N GN+L+V+G+++R+ +L++ F G VT ++ +P T+ S GF F++ TVE A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 95 CIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
I LN GR++ V+KAKRSR +PTPG Y G
Sbjct: 158 AIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
G NL+V+GLS+ ADL+ F GKV +VT+ R+ + + FVTM T + A +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509
Query: 97 KYLNRSVLEGRLITVEKAK 115
+L+R+ L GR+I+VEKAK
Sbjct: 510 SHLHRTELHGRMISVEKAK 528
>sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
Length = 915
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
G N +V+GLS+ DL+ F GKV +VT+ R+ + + FVTM T E A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 97 KYLNRSVLEGRLITVEKAK 115
+L+++ L G++I+VEKAK
Sbjct: 465 NHLHKTELHGKMISVEKAK 483
>sp|Q5R452|SAFB1_PONAB Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1
Length = 914
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
G N +V+GLS+ DL+ F GKV +VT+ R+ + + FVTM T E A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 97 KYLNRSVLEGRLITVEKAK 115
+L+++ L G++I+VEKAK
Sbjct: 465 NHLHKTELHGKMISVEKAK 483
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
G NL+V+GLS+ DL+ F GKV +VT+ R+ + + FVTM T + A +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465
Query: 97 KYLNRSVLEGRLITVEKAK 115
+L+R+ L GR+I+VEKAK
Sbjct: 466 SHLHRTELHGRMISVEKAK 484
>sp|D3YXK2|SAFB1_MOUSE Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2
Length = 937
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
G N +V+GLS+ DL+ F GKV +VT+ R+ + + FVTM T E A +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 97 KYLNRSVLEGRLITVEKAK 115
+L+++ L G++I+VEKAK
Sbjct: 487 SHLHKTELHGKMISVEKAK 505
>sp|O88453|SAFB1_RAT Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1
SV=2
Length = 931
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
G N +V+GLS+ DL+ F GKV +VT+ R+ + + FVTM T E A +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 97 KYLNRSVLEGRLITVEKAK 115
+L+++ L G++I+VEKAK
Sbjct: 487 NHLHKTELHGKMISVEKAK 505
>sp|Q9NWH9|SLTM_HUMAN SAFB-like transcription modulator OS=Homo sapiens GN=SLTM PE=1 SV=2
Length = 1034
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
N++V+GLS+ ADL+ FG GKV +VT+ R+ + + VTM + RCI +
Sbjct: 385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAH 444
Query: 99 LNRSVLEGRLITVEKAK 115
L+R+ L G+LI+VEK K
Sbjct: 445 LHRTELHGQLISVEKVK 461
>sp|Q8CH25|SLTM_MOUSE SAFB-like transcription modulator OS=Mus musculus GN=Sltm PE=1 SV=1
Length = 1031
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
N++V+GLS+ ADL+ FG GKV +VT+ R+ + + VTM + RC+ +
Sbjct: 385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCVAH 444
Query: 99 LNRSVLEGRLITVEKAK 115
L+R+ L G+LI+VEK K
Sbjct: 445 LHRTELHGQLISVEKVK 461
>sp|Q498L2|SLTM_XENLA SAFB-like transcription modulator OS=Xenopus laevis GN=sltm PE=2
SV=1
Length = 998
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98
NL+V+GLS+ ADL+ FG GKV +VT+ R+ + + VTM + RCI +
Sbjct: 346 NLWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSADVARCISH 405
Query: 99 LNRSVLEGRLITVEKAK 115
L+R+ L G+ I+VEK K
Sbjct: 406 LHRTELHGQQISVEKVK 422
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
ANP N L V GLS T DL + F G + + +V D ++R S GFAFV E V+
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQRGNGRRR---SRSYSPY 148
A + N L+GR I V+ + R TPTPG Y G G+ RRR R Y
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG--RPTYGSSRRRDYYDRGYDRG 229
Query: 149 RYNRDSYSR 157
+RD YSR
Sbjct: 230 YDDRDYYSR 238
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
ANP N L V GLS T DL + F G + + +V D ++R S GFAFV E V+
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQRGNGRRR---SRSYSPY 148
A + N L+GR I V+ + R TPTPG Y G G+ RRR R Y
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG--RPTYGSSRRRDYYDRGYDRG 229
Query: 149 RYNRDSYSR 157
+RD YSR
Sbjct: 230 YDDRDYYSR 238
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
ANP N L V GLS T DL + F G + + +V D ++R S GFAFV E V+
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQRGNGRRR---SRSYSPY 148
A + N L+GR I V+ + R TPTPG Y G G+ RRR R Y
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG--RPTYGSSRRRDYYDRGYDRG 229
Query: 149 RYNRDSYSR 157
+RD YSR
Sbjct: 230 YDDRDYYSR 238
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
ANP N L V GLS T DL + F G + + +V D ++R S GFAFV E V+
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHGLREKQRGNGRRR---SRSYSPY 148
A + N L+GR I V+ + R TPTPG Y G G+ RRR R Y
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG--RPTYGSSRRRDYYDRGYDRG 229
Query: 149 RYNRDSYSR 157
+RD YSR
Sbjct: 230 YDDRDYYSR 238
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE F G+V E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPT 123
A + LN L+G+ I VE+A + TP+
Sbjct: 62 AKDAARELNGKALDGKPIKVEQATKPSFSTPS 93
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A +PG L++ GL+ L+ FG G ++E L+ D RT +S GFAF+T E
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A K +N + L G+ I VE+AK+
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVEQAKK 85
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A +PG L++ GL+ L+ FG G ++E L+ D RT +S GFAF+T E
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A K +N L G+ I VE+AK+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A +PG L++ GL+ L+ FG G ++E L+ D RT +S GFAF+T E
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A K +N L G+ I VE+AK+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A +PG L++ GL+ L+ FG G ++E L+ D RT +S GFAF+T E
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A K +N L G+ I VE+AK+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATK 86
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATK 86
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A +PG L++ GL+ L+ FG G ++E L+ D RT +S GFAF+T E
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A K +N L G+ I VE+AK+
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T + LE +F G+++E L+ D T +S GFAFVT E
Sbjct: 3 EADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRT 121
A + +N L+G+ I VE+A + + T
Sbjct: 62 AKDAAREMNGKPLDGKPIKVEQATKPQFET 91
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+T LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I VE+A +
Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATK 86
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
ANP N L V GLS T DL + F G ++ ++V D RT S GFAFV E ++
Sbjct: 111 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
+ ++ N L+GR I V+ + R TPTPG Y G
Sbjct: 171 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 34 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
ANP N L V GLS T DL + F G ++ ++V D RT S GFAFV E ++
Sbjct: 113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
+ ++ N L+GR I V+ + R TPTPG Y G
Sbjct: 173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A +PG L++ GL+ L+ FG G ++E L+ D RT +S GFAF+T E
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPAD 60
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A K +N L G+ I VE+A++
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAQK 85
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L++ GL+ + L+ FG G + + L+ D +T +S GFAFVT E+ A + +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 100 NRSVLEGRLITVEKA-----KRSRGRTPTPG 125
N L+G+ I V + K SR PTPG
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPG 100
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96
GN +++ GLS + DL ++ G+V +C + TDP T S GF FV + D+ +
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 97 KYLNRSVLEGRLITVEKAKRSRGRTP 122
+ L L+G+LI ++AK +G+ P
Sbjct: 110 E-LKEHKLDGKLIDPKRAKALKGKEP 134
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 27 RSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTM 86
R+++ P ++V GLS + ++++FG G++ L D +T E GF F+T
Sbjct: 125 RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 184
Query: 87 ETVEGADRCIK 97
E + ++
Sbjct: 185 TDEEPVKKLLE 195
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V GL+ + L+ FG G + + L+ D +T +S GFAFVT E+ A + +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 100 NRSVLEGRLITVEKAKR-----SRGRTPTPG 125
N L+G+ I V + + SR PTPG
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFESSRWVPPTPG 100
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V GLS LE+ F G+++E +V D T+ S GF FVT E ++ A + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 NRSVLEGRLITVEKAKRS 117
N ++GR I V++A +S
Sbjct: 68 NGKSVDGRQIRVDQAGKS 85
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V GLS LE+ F G+++E +V D T+ S GF FVT E ++ A + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 NRSVLEGRLITVEKAKRS 117
N ++GR I V++A +S
Sbjct: 68 NGKSVDGRQIRVDQAGKS 85
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V GLS LE+ F G+++E +V D T+ S GF FVT E ++ A + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 NRSVLEGRLITVEKAKRS 117
N ++GR I V++A +S
Sbjct: 68 NGKSVDGRQIRVDQAGKS 85
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V GLS LE+ F G+++E +V D T+ S GF FVT E ++ A + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 NRSVLEGRLITVEKAKRS 117
N ++GR I V++A +S
Sbjct: 68 NGKSVDGRQIRVDQAGKS 85
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V GLS LE+ F G+++E +V D T+ S GF FVT E ++ A + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 NRSVLEGRLITVEKAKRS 117
N ++GR I V++A +S
Sbjct: 68 NGKSVDGRQIRVDQAGKS 85
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+ LE FG G+++E L+ D T +S GFAF+T E+
Sbjct: 3 EADRPGK-LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A ++ +N L+G+ I V +A +
Sbjct: 62 AKAAVRDMNGKSLDGKAIKVAQATK 86
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95
PG +++ GL+ + L++ FG G V L+ D T++S GFAF+T + A
Sbjct: 7 PGK-IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNA 65
Query: 96 IKYLNRSVLEGRLITVEKAKR 116
+K +N +L+G+ I V++A+R
Sbjct: 66 VKEMNGVILDGKRIKVKQARR 86
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+ LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I V +A +
Sbjct: 62 AKAAARDMNGKSLDGKAIKVAQATK 86
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
+++ GLS + DL ++ G+V +C + TDP T S GF FV + D+ ++ L
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-L 208
Query: 100 NRSVLEGRLITVEKAKRSRGRTP 122
L+G+LI ++AK +G+ P
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEP 231
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 27 RSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTM 86
R+++ P ++V GLS + ++++FG G++ L D +T E GF F+T
Sbjct: 222 RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
Query: 87 ETVEGADRCIK 97
E + ++
Sbjct: 282 TDEEPVKKLLE 292
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%)
Query: 26 SRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVT 85
+R+R + A+P N L V GL+ + DL+ F GK+ L+ D +T S F FV
Sbjct: 101 TRNRLANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVY 160
Query: 86 METVEGADRCIKYLNRSVLEGRLITVEKAKRSRGRTPTPGHYHG 129
E E A R + L G+ I + + + PTPG Y G
Sbjct: 161 FENKEDAVRAKEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFG 204
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEG 91
+A PG L++ GL+ LE FG G++ E L+ D T +S GFAFVT E+
Sbjct: 3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAN 61
Query: 92 ADRCIKYLNRSVLEGRLITVEKAKR 116
A + +N L+G+ I V +A +
Sbjct: 62 AKAAARDMNGKSLDGKAIKVAQATK 86
>sp|A4F5G6|RFOX2_XENLA RNA binding protein fox-1 homolog 2 OS=Xenopus laevis GN=rbfox2
PE=1 SV=1
Length = 411
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 15 SLSRSRRSRSRSRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPR 74
S + ++S+S++ S A+P L+V+ + R + DL + FG GK+ + ++ +
Sbjct: 151 SQTEGQQSQSQNNENSETKASP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-- 207
Query: 75 TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114
R S GF FVT ET ADR + L+ +V+EGR I V A
Sbjct: 208 ERGSKGFGFVTFETSADADRAREKLHSTVVEGRKIEVNNA 247
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 43/88 (48%)
Query: 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88
R+P P +YV L V N LE+ F GKV E +V D T S GF FVTM
Sbjct: 235 RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Query: 89 VEGADRCIKYLNRSVLEGRLITVEKAKR 116
V+ + I L+ LEGR I V A+
Sbjct: 295 VDELNEAISALDGQNLEGRAIRVNVAEE 322
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99
L+V L+ V + L F G V ++ + T +S GF FVTM +V+ A+ ++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 100 NRSVLEGRLITVEKA 114
NR L GRL+TV KA
Sbjct: 212 NRYDLNGRLLTVNKA 226
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95
PG +++ GL+ + L++ FG G V L+ D T++S GFAF+T A
Sbjct: 7 PGK-IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNA 65
Query: 96 IKYLNRSVLEGRLITVEKAKR 116
+K +N +L+G+ I V++A+R
Sbjct: 66 VKEMNGVILDGKRIKVKQARR 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,467,155
Number of Sequences: 539616
Number of extensions: 3239106
Number of successful extensions: 19412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 505
Number of HSP's that attempted gapping in prelim test: 11241
Number of HSP's gapped (non-prelim): 6595
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)