Query 028972
Match_columns 201
No_of_seqs 312 out of 2675
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4207 Predicted splicing fac 99.9 1.1E-22 2.4E-27 154.8 13.4 89 31-119 7-95 (256)
2 PLN03134 glycine-rich RNA-bind 99.9 5.5E-22 1.2E-26 147.6 16.1 87 33-119 30-116 (144)
3 KOG0107 Alternative splicing f 99.9 2.7E-21 5.9E-26 143.7 15.6 80 35-119 8-87 (195)
4 KOG0113 U1 small nuclear ribon 99.8 8.6E-19 1.9E-23 140.0 15.2 97 34-130 98-194 (335)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 8.1E-19 1.8E-23 148.1 13.2 84 35-118 267-350 (352)
6 TIGR01659 sex-lethal sex-letha 99.8 7.1E-19 1.5E-23 148.0 11.4 85 32-116 102-186 (346)
7 KOG0130 RNA-binding protein RB 99.8 5.5E-19 1.2E-23 126.3 8.1 91 28-118 63-153 (170)
8 PF00076 RRM_1: RNA recognitio 99.8 3.4E-18 7.4E-23 111.1 9.7 70 40-110 1-70 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.6E-18 5.6E-23 145.1 11.2 83 36-118 2-84 (352)
10 TIGR01659 sex-lethal sex-letha 99.8 1.3E-17 2.8E-22 140.3 14.4 84 36-119 192-277 (346)
11 KOG0121 Nuclear cap-binding pr 99.7 5.3E-18 1.1E-22 120.2 7.3 84 33-116 32-115 (153)
12 KOG0122 Translation initiation 99.7 1.7E-17 3.6E-22 129.4 9.8 82 36-117 188-269 (270)
13 TIGR01622 SF-CC1 splicing fact 99.7 9.3E-17 2E-21 140.2 13.7 83 34-117 86-168 (457)
14 PF14259 RRM_6: RNA recognitio 99.7 1.2E-16 2.5E-21 104.3 9.9 70 40-110 1-70 (70)
15 KOG0149 Predicted RNA-binding 99.7 7.3E-17 1.6E-21 125.3 7.6 83 33-116 8-90 (247)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3.7E-16 8E-21 138.1 12.4 83 35-117 293-375 (509)
17 TIGR01645 half-pint poly-U bin 99.7 4.6E-16 9.9E-21 138.2 12.8 85 35-119 202-286 (612)
18 PLN03120 nucleic acid binding 99.7 3.5E-16 7.7E-21 124.9 10.5 77 37-117 4-80 (260)
19 KOG0105 Alternative splicing f 99.7 2.9E-16 6.2E-21 118.1 9.1 80 36-118 5-84 (241)
20 TIGR01622 SF-CC1 splicing fact 99.7 4.9E-16 1.1E-20 135.6 12.0 82 36-117 185-266 (457)
21 KOG0125 Ataxin 2-binding prote 99.7 3.3E-16 7.1E-21 126.8 8.8 83 33-117 92-174 (376)
22 TIGR01645 half-pint poly-U bin 99.7 4.1E-16 8.9E-21 138.5 10.2 82 34-115 104-185 (612)
23 smart00362 RRM_2 RNA recogniti 99.7 1.3E-15 2.8E-20 98.2 9.6 72 39-112 1-72 (72)
24 PLN03213 repressor of silencin 99.7 5.5E-16 1.2E-20 131.5 9.9 80 33-116 6-87 (759)
25 KOG0126 Predicted RNA-binding 99.7 2E-17 4.3E-22 123.9 0.7 81 35-115 33-113 (219)
26 TIGR01628 PABP-1234 polyadenyl 99.6 1.4E-15 3.1E-20 136.0 10.9 79 39-117 2-80 (562)
27 PLN03121 nucleic acid binding 99.6 2.6E-15 5.6E-20 118.3 10.6 78 35-116 3-80 (243)
28 TIGR01628 PABP-1234 polyadenyl 99.6 2.3E-15 5.1E-20 134.7 11.2 84 34-118 282-365 (562)
29 TIGR01648 hnRNP-R-Q heterogene 99.6 1.8E-15 4E-20 134.0 10.1 80 34-114 55-135 (578)
30 smart00360 RRM RNA recognition 99.6 3.1E-15 6.8E-20 96.0 8.7 71 42-112 1-71 (71)
31 KOG0117 Heterogeneous nuclear 99.6 2.4E-15 5.3E-20 126.0 10.0 83 34-116 80-163 (506)
32 KOG0111 Cyclophilin-type pepti 99.6 4.6E-16 9.9E-21 119.9 4.9 86 34-119 7-92 (298)
33 KOG0148 Apoptosis-promoting RN 99.6 6.2E-15 1.4E-19 116.7 10.4 81 33-119 160-240 (321)
34 KOG0131 Splicing factor 3b, su 99.6 1.4E-15 3E-20 114.0 6.1 83 33-115 5-87 (203)
35 cd00590 RRM RRM (RNA recogniti 99.6 2E-14 4.2E-19 93.1 10.2 74 39-113 1-74 (74)
36 COG0724 RNA-binding proteins ( 99.6 8.5E-15 1.8E-19 117.4 10.2 80 37-116 115-194 (306)
37 TIGR01648 hnRNP-R-Q heterogene 99.6 9.2E-15 2E-19 129.6 11.3 76 35-118 231-308 (578)
38 KOG0148 Apoptosis-promoting RN 99.6 4.7E-15 1E-19 117.4 8.2 84 35-118 60-143 (321)
39 KOG0114 Predicted RNA-binding 99.6 1.9E-14 4.1E-19 98.6 9.8 82 33-117 14-95 (124)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.6E-14 3.4E-19 127.1 11.7 80 34-118 272-352 (481)
41 KOG0145 RNA-binding protein EL 99.6 1.4E-14 3E-19 114.3 9.2 86 33-118 37-122 (360)
42 KOG0109 RNA-binding protein LA 99.6 3.9E-15 8.4E-20 118.9 5.9 72 38-117 3-74 (346)
43 KOG0108 mRNA cleavage and poly 99.6 1.1E-14 2.4E-19 124.9 9.0 82 38-119 19-100 (435)
44 KOG0145 RNA-binding protein EL 99.6 2.8E-14 6E-19 112.6 10.5 85 33-117 274-358 (360)
45 KOG0144 RNA-binding protein CU 99.5 5.9E-15 1.3E-19 123.3 5.8 85 35-120 122-209 (510)
46 KOG0144 RNA-binding protein CU 99.5 1.5E-14 3.3E-19 120.9 8.2 97 24-120 21-120 (510)
47 KOG0117 Heterogeneous nuclear 99.5 1.3E-14 2.8E-19 121.7 7.5 78 33-118 255-332 (506)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4E-14 8.6E-19 124.6 10.6 76 36-117 1-78 (481)
49 KOG0127 Nucleolar protein fibr 99.5 2.9E-14 6.2E-19 122.3 9.1 84 34-118 114-197 (678)
50 KOG0127 Nucleolar protein fibr 99.5 3.1E-14 6.8E-19 122.0 9.2 88 31-118 286-379 (678)
51 KOG0415 Predicted peptidyl pro 99.5 1.8E-14 3.8E-19 118.0 6.9 85 32-116 234-318 (479)
52 KOG4212 RNA-binding protein hn 99.5 2.9E-13 6.3E-18 113.5 14.2 86 30-116 37-123 (608)
53 PF13893 RRM_5: RNA recognitio 99.5 1.8E-13 3.9E-18 85.4 8.5 56 54-114 1-56 (56)
54 KOG0146 RNA-binding protein ET 99.5 4.8E-14 1E-18 111.7 6.1 86 33-118 281-366 (371)
55 smart00361 RRM_1 RNA recogniti 99.5 2.2E-13 4.9E-18 89.0 8.2 61 51-111 2-69 (70)
56 KOG0109 RNA-binding protein LA 99.5 7.2E-14 1.6E-18 111.7 6.3 90 34-131 75-164 (346)
57 KOG0124 Polypyrimidine tract-b 99.5 4.8E-14 1E-18 115.9 4.9 77 37-113 113-189 (544)
58 KOG0132 RNA polymerase II C-te 99.5 3.4E-13 7.4E-18 119.6 10.3 79 36-120 420-498 (894)
59 KOG0147 Transcriptional coacti 99.4 1.2E-13 2.7E-18 118.4 6.4 83 36-118 277-359 (549)
60 KOG4206 Spliceosomal protein s 99.4 9.4E-13 2E-17 102.1 8.0 85 32-119 4-92 (221)
61 KOG0131 Splicing factor 3b, su 99.4 1E-12 2.2E-17 98.7 6.8 88 32-119 91-179 (203)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.9E-12 4.1E-17 114.5 9.0 72 37-115 175-258 (509)
63 KOG0153 Predicted RNA-binding 99.3 1.9E-11 4.2E-16 100.0 9.0 83 29-117 220-303 (377)
64 KOG4208 Nucleolar RNA-binding 99.3 2E-11 4.4E-16 93.5 8.4 87 31-117 43-130 (214)
65 KOG0116 RasGAP SH3 binding pro 99.3 6E-11 1.3E-15 101.5 12.1 85 33-118 284-368 (419)
66 KOG0123 Polyadenylate-binding 99.3 1.5E-11 3.3E-16 104.4 8.5 79 40-121 79-157 (369)
67 KOG4205 RNA-binding protein mu 99.3 1.5E-11 3.2E-16 101.5 7.5 89 32-121 92-180 (311)
68 KOG4661 Hsp27-ERE-TATA-binding 99.3 1.7E-11 3.7E-16 106.0 7.8 84 35-118 403-486 (940)
69 KOG0110 RNA-binding protein (R 99.2 2.7E-11 5.8E-16 106.9 8.2 79 37-115 515-596 (725)
70 KOG0124 Polypyrimidine tract-b 99.2 2.9E-11 6.3E-16 99.7 7.3 84 35-118 208-291 (544)
71 KOG4205 RNA-binding protein mu 99.2 1.6E-11 3.5E-16 101.4 5.6 82 36-118 5-86 (311)
72 KOG4212 RNA-binding protein hn 99.2 4.8E-11 1.1E-15 100.4 7.3 80 30-114 529-608 (608)
73 KOG0533 RRM motif-containing p 99.2 1.1E-10 2.4E-15 93.0 8.7 84 33-117 79-162 (243)
74 KOG0106 Alternative splicing f 99.2 3.7E-11 8E-16 93.9 5.1 73 38-118 2-74 (216)
75 KOG0110 RNA-binding protein (R 99.2 3.6E-11 7.8E-16 106.1 5.2 82 36-117 612-693 (725)
76 PF04059 RRM_2: RNA recognitio 99.1 5.1E-10 1.1E-14 77.2 9.0 80 38-117 2-87 (97)
77 KOG0123 Polyadenylate-binding 99.1 2.3E-10 4.9E-15 97.3 8.4 75 38-118 2-76 (369)
78 KOG0146 RNA-binding protein ET 99.1 1.1E-10 2.4E-15 92.8 5.4 84 36-120 18-104 (371)
79 KOG4209 Splicing factor RNPS1, 99.1 2.4E-10 5.3E-15 91.0 6.1 84 33-117 97-180 (231)
80 KOG1548 Transcription elongati 99.0 9.2E-10 2E-14 90.2 8.3 84 34-118 131-222 (382)
81 KOG4454 RNA binding protein (R 99.0 1.1E-10 2.4E-15 90.3 2.4 80 33-114 5-84 (267)
82 KOG1457 RNA binding protein (c 98.9 1.5E-08 3.2E-13 78.9 9.8 83 36-118 33-119 (284)
83 KOG0226 RNA-binding proteins [ 98.9 3.9E-09 8.4E-14 83.4 5.5 93 24-116 177-269 (290)
84 KOG4211 Splicing factor hnRNP- 98.9 1.1E-08 2.4E-13 87.4 8.6 81 33-117 6-86 (510)
85 KOG1995 Conserved Zn-finger pr 98.9 3.1E-09 6.7E-14 87.7 4.9 84 35-118 64-155 (351)
86 KOG4660 Protein Mei2, essentia 98.8 2.5E-09 5.4E-14 92.5 4.4 72 34-110 72-143 (549)
87 KOG0151 Predicted splicing reg 98.8 7E-09 1.5E-13 91.9 7.0 84 34-117 171-257 (877)
88 KOG0120 Splicing factor U2AF, 98.8 5.7E-09 1.2E-13 90.7 4.6 90 29-118 281-370 (500)
89 KOG0106 Alternative splicing f 98.7 4.1E-08 8.9E-13 76.9 6.3 71 33-111 95-165 (216)
90 PF08777 RRM_3: RNA binding mo 98.7 5.1E-08 1.1E-12 68.6 6.1 71 37-113 1-76 (105)
91 KOG0105 Alternative splicing f 98.6 1.3E-06 2.8E-11 66.4 11.8 72 28-106 106-177 (241)
92 KOG4211 Splicing factor hnRNP- 98.6 1.9E-07 4.2E-12 79.9 8.3 85 28-114 94-179 (510)
93 KOG1190 Polypyrimidine tract-b 98.5 6.5E-07 1.4E-11 75.3 10.0 77 37-118 297-374 (492)
94 KOG4206 Spliceosomal protein s 98.5 3.9E-07 8.3E-12 71.1 8.1 77 34-115 143-220 (221)
95 PF11608 Limkain-b1: Limkain b 98.5 4.8E-07 1E-11 60.1 6.7 71 38-118 3-78 (90)
96 KOG0147 Transcriptional coacti 98.5 1.1E-07 2.5E-12 82.2 3.7 83 36-119 178-260 (549)
97 KOG4849 mRNA cleavage factor I 98.5 1.4E-07 3.1E-12 77.8 3.7 75 38-112 81-157 (498)
98 KOG1457 RNA binding protein (c 98.4 2.6E-07 5.7E-12 72.0 4.0 67 34-104 207-273 (284)
99 KOG1456 Heterogeneous nuclear 98.4 2.1E-06 4.5E-11 71.6 9.5 86 28-118 278-364 (494)
100 KOG4210 Nuclear localization s 98.4 5.4E-07 1.2E-11 74.2 4.8 82 36-118 183-265 (285)
101 PF05172 Nup35_RRM: Nup53/35/4 98.3 4.9E-06 1.1E-10 57.8 8.0 78 36-115 5-90 (100)
102 COG5175 MOT2 Transcriptional r 98.3 1.7E-06 3.7E-11 71.2 6.6 82 36-117 113-203 (480)
103 KOG3152 TBP-binding protein, a 98.3 5.5E-07 1.2E-11 71.4 2.7 72 37-108 74-157 (278)
104 KOG2314 Translation initiation 98.3 2.6E-06 5.7E-11 74.2 7.0 77 36-113 57-140 (698)
105 PF14605 Nup35_RRM_2: Nup53/35 98.2 3.3E-06 7.1E-11 51.9 5.3 52 38-96 2-53 (53)
106 KOG4307 RNA binding protein RB 98.2 5.3E-06 1.2E-10 74.0 8.0 78 36-113 865-943 (944)
107 KOG1190 Polypyrimidine tract-b 98.2 4.8E-06 1E-10 70.1 6.8 83 29-116 405-490 (492)
108 KOG2416 Acinus (induces apopto 98.1 3.3E-06 7.1E-11 74.0 4.1 84 27-116 434-521 (718)
109 KOG1365 RNA-binding protein Fu 98.1 5.3E-06 1.1E-10 69.4 4.9 77 37-114 280-359 (508)
110 KOG1456 Heterogeneous nuclear 98.1 3.1E-05 6.6E-10 64.8 9.0 83 31-118 114-200 (494)
111 KOG0120 Splicing factor U2AF, 98.0 1.8E-05 3.9E-10 69.2 7.6 66 52-117 424-492 (500)
112 KOG1855 Predicted RNA-binding 98.0 8.4E-06 1.8E-10 69.0 5.1 71 32-102 226-309 (484)
113 KOG0129 Predicted RNA-binding 98.0 1.8E-05 3.9E-10 68.5 7.0 66 32-97 365-431 (520)
114 KOG1548 Transcription elongati 98.0 2.5E-05 5.4E-10 64.6 7.4 78 35-116 263-351 (382)
115 PF08952 DUF1866: Domain of un 98.0 6.5E-05 1.4E-09 55.4 8.2 74 35-117 25-107 (146)
116 KOG0129 Predicted RNA-binding 97.9 5.7E-05 1.2E-09 65.5 8.3 67 33-100 255-327 (520)
117 KOG1996 mRNA splicing factor [ 97.9 5.1E-05 1.1E-09 61.6 6.8 65 51-115 300-365 (378)
118 KOG0112 Large RNA-binding prot 97.8 2.2E-05 4.9E-10 71.8 4.7 80 33-118 451-532 (975)
119 KOG2202 U2 snRNP splicing fact 97.8 9.1E-06 2E-10 64.6 1.7 66 52-118 83-149 (260)
120 KOG4676 Splicing factor, argin 97.7 7.1E-05 1.5E-09 62.9 4.9 73 39-112 9-84 (479)
121 KOG0128 RNA-binding protein SA 97.6 3.1E-05 6.8E-10 70.5 2.5 80 37-117 736-815 (881)
122 KOG4307 RNA binding protein RB 97.6 6.2E-05 1.3E-09 67.4 4.2 87 26-113 423-510 (944)
123 PF10309 DUF2414: Protein of u 97.6 0.00043 9.4E-09 43.6 6.7 55 37-99 5-62 (62)
124 KOG1365 RNA-binding protein Fu 97.5 0.00014 3.1E-09 61.1 4.7 70 39-110 163-236 (508)
125 PF08675 RNA_bind: RNA binding 97.4 0.00087 1.9E-08 44.6 6.9 56 37-101 9-64 (87)
126 KOG2193 IGF-II mRNA-binding pr 97.4 0.00015 3.2E-09 61.7 3.7 75 38-118 2-77 (584)
127 KOG0128 RNA-binding protein SA 97.4 4.7E-06 1E-10 75.7 -5.6 75 37-111 667-741 (881)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 97.2 0.0005 1.1E-08 52.8 4.8 84 34-117 4-98 (176)
129 KOG2135 Proteins containing th 97.2 0.00029 6.2E-09 60.6 3.3 85 25-116 360-445 (526)
130 KOG4660 Protein Mei2, essentia 97.1 0.0009 1.9E-08 58.7 5.6 57 61-117 413-473 (549)
131 KOG0112 Large RNA-binding prot 97.0 0.00018 3.8E-09 66.1 0.5 79 35-114 370-448 (975)
132 KOG4285 Mitotic phosphoprotein 97.0 0.0039 8.4E-08 51.0 7.9 72 36-115 196-268 (350)
133 KOG2068 MOT2 transcription fac 97.0 0.00027 5.9E-09 58.4 1.3 80 37-117 77-163 (327)
134 KOG0115 RNA-binding protein p5 97.0 0.001 2.2E-08 53.2 4.1 77 38-115 32-112 (275)
135 PF07576 BRAP2: BRCA1-associat 96.9 0.015 3.2E-07 41.2 9.0 72 33-106 8-81 (110)
136 PF04847 Calcipressin: Calcipr 96.8 0.0047 1E-07 47.7 6.6 62 50-117 8-71 (184)
137 PF03880 DbpA: DbpA RNA bindin 96.8 0.0094 2E-07 39.0 7.1 67 39-114 2-74 (74)
138 KOG2591 c-Mpl binding protein, 96.7 0.0024 5.2E-08 56.1 4.9 69 36-111 174-246 (684)
139 KOG4676 Splicing factor, argin 96.7 0.00026 5.6E-09 59.6 -1.2 66 38-108 152-217 (479)
140 PF15023 DUF4523: Protein of u 96.5 0.015 3.3E-07 42.7 7.2 74 34-115 83-160 (166)
141 KOG2253 U1 snRNP complex, subu 96.4 0.0024 5.3E-08 57.1 2.8 74 31-113 34-107 (668)
142 KOG0804 Cytoplasmic Zn-finger 96.2 0.021 4.5E-07 49.3 7.4 73 32-106 69-142 (493)
143 KOG4210 Nuclear localization s 96.1 0.0036 7.8E-08 51.7 2.4 80 36-115 87-166 (285)
144 KOG4574 RNA-binding protein (c 96.0 0.0062 1.3E-07 56.1 3.5 73 42-120 303-377 (1007)
145 PF11767 SET_assoc: Histone ly 95.7 0.11 2.4E-06 33.2 7.3 55 48-111 11-65 (66)
146 KOG2193 IGF-II mRNA-binding pr 95.7 0.001 2.2E-08 56.7 -2.8 81 37-120 80-160 (584)
147 PRK11634 ATP-dependent RNA hel 94.6 1.3 2.7E-05 40.9 13.8 70 39-117 488-563 (629)
148 KOG2318 Uncharacterized conser 93.3 0.59 1.3E-05 41.9 8.4 80 33-112 170-301 (650)
149 smart00596 PRE_C2HC PRE_C2HC d 92.7 0.19 4.2E-06 32.2 3.5 63 52-117 2-65 (69)
150 KOG4410 5-formyltetrahydrofola 92.4 0.49 1.1E-05 38.8 6.3 62 33-100 326-395 (396)
151 KOG4483 Uncharacterized conser 92.4 0.4 8.7E-06 41.1 6.0 56 35-97 389-445 (528)
152 PF07530 PRE_C2HC: Associated 92.4 0.28 6.1E-06 31.5 4.0 63 52-117 2-65 (68)
153 KOG4019 Calcineurin-mediated s 91.2 0.18 3.9E-06 38.5 2.5 75 37-117 10-90 (193)
154 PF03468 XS: XS domain; Inter 91.0 0.52 1.1E-05 33.6 4.6 56 39-97 10-75 (116)
155 KOG4207 Predicted splicing fac 87.3 7.7 0.00017 30.6 8.9 58 50-107 29-88 (256)
156 KOG2295 C2H2 Zn-finger protein 86.3 0.1 2.2E-06 46.3 -2.0 74 35-108 229-302 (648)
157 COG0724 RNA-binding proteins ( 84.7 1.2 2.6E-05 34.9 3.6 65 33-97 221-285 (306)
158 KOG1295 Nonsense-mediated deca 84.6 1.2 2.7E-05 37.9 3.7 69 36-104 6-77 (376)
159 PRK14548 50S ribosomal protein 83.8 4.6 0.0001 27.0 5.5 58 39-99 22-81 (84)
160 TIGR03636 L23_arch archaeal ri 83.2 5.4 0.00012 26.2 5.6 58 39-99 15-74 (77)
161 COG5638 Uncharacterized conser 83.0 4.6 0.0001 35.0 6.4 83 31-113 140-294 (622)
162 PF15513 DUF4651: Domain of un 81.8 3.5 7.6E-05 25.9 4.0 20 52-71 9-28 (62)
163 KOG4365 Uncharacterized conser 81.7 0.22 4.8E-06 43.1 -1.8 78 38-116 4-81 (572)
164 KOG4454 RNA binding protein (R 81.3 0.35 7.5E-06 38.2 -0.7 73 36-109 79-155 (267)
165 PRK11901 hypothetical protein; 79.9 6.7 0.00014 33.0 6.2 63 36-103 244-308 (327)
166 PF10567 Nab6_mRNP_bdg: RNA-re 79.3 6.3 0.00014 32.6 5.8 80 36-115 14-106 (309)
167 PF02714 DUF221: Domain of unk 75.6 3.8 8.2E-05 34.2 3.8 35 82-118 1-35 (325)
168 KOG3702 Nuclear polyadenylated 74.9 2.4 5.1E-05 38.7 2.4 72 39-111 513-584 (681)
169 PF00403 HMA: Heavy-metal-asso 73.6 18 0.00038 22.0 6.7 54 39-98 1-58 (62)
170 PRK10629 EnvZ/OmpR regulon mod 72.5 34 0.00073 24.8 7.9 71 37-115 35-109 (127)
171 KOG4008 rRNA processing protei 70.1 2.9 6.2E-05 33.5 1.6 36 33-68 36-71 (261)
172 KOG0835 Cyclin L [General func 69.9 28 0.00061 29.4 7.4 8 49-56 213-220 (367)
173 KOG4213 RNA-binding protein La 66.2 9.6 0.00021 29.3 3.7 48 49-97 118-168 (205)
174 KOG2891 Surface glycoprotein [ 64.6 10 0.00022 31.3 3.8 35 37-71 149-195 (445)
175 PF08734 GYD: GYD domain; Int 62.7 37 0.00079 22.9 5.8 46 51-100 22-68 (91)
176 PRK11230 glycolate oxidase sub 62.2 37 0.0008 30.5 7.3 63 37-100 189-255 (499)
177 COG0150 PurM Phosphoribosylami 61.8 2.3 5.1E-05 35.9 -0.3 48 51-102 275-322 (345)
178 COG2608 CopZ Copper chaperone 61.6 39 0.00085 21.5 5.6 54 38-97 4-61 (71)
179 KOG2187 tRNA uracil-5-methyltr 60.9 7.9 0.00017 34.6 2.8 38 80-117 64-101 (534)
180 KOG3424 40S ribosomal protein 59.7 28 0.0006 24.9 4.8 46 48-94 34-84 (132)
181 PF09869 DUF2096: Uncharacteri 58.5 55 0.0012 24.8 6.5 48 43-100 117-164 (169)
182 KOG4840 Predicted hydrolases o 58.4 17 0.00036 29.3 3.9 71 37-112 37-113 (299)
183 PF08206 OB_RNB: Ribonuclease 57.3 2 4.4E-05 26.4 -1.1 37 78-115 7-44 (58)
184 KOG0156 Cytochrome P450 CYP2 s 56.9 20 0.00044 32.0 4.7 60 40-109 35-97 (489)
185 COG5193 LHP1 La protein, small 55.7 6.2 0.00013 34.1 1.2 59 38-96 175-243 (438)
186 COG3254 Uncharacterized conser 55.0 42 0.00092 23.4 5.0 42 52-96 27-68 (105)
187 PF14893 PNMA: PNMA 55.0 16 0.00035 30.9 3.6 77 35-114 16-94 (331)
188 PRK08559 nusG transcription an 54.5 41 0.00088 25.0 5.4 35 64-103 36-70 (153)
189 PF07292 NID: Nmi/IFP 35 domai 54.4 8.6 0.00019 26.0 1.5 24 35-58 50-73 (88)
190 PF07292 NID: Nmi/IFP 35 domai 54.1 26 0.00056 23.7 3.8 30 82-112 1-32 (88)
191 PF14581 SseB_C: SseB protein 53.3 30 0.00066 23.8 4.3 81 35-115 3-89 (108)
192 PF08156 NOP5NT: NOP5NT (NUC12 53.1 5.1 0.00011 25.5 0.3 38 52-99 27-64 (67)
193 PF09707 Cas_Cas2CT1978: CRISP 53.0 36 0.00079 22.8 4.4 48 37-87 25-72 (86)
194 PF08544 GHMP_kinases_C: GHMP 52.2 60 0.0013 20.7 5.5 44 52-100 37-80 (85)
195 PF09902 DUF2129: Uncharacteri 51.1 38 0.00083 21.9 4.1 39 57-104 16-54 (71)
196 cd00027 BRCT Breast Cancer Sup 49.8 53 0.0011 19.4 5.1 26 38-63 2-27 (72)
197 PRK01178 rps24e 30S ribosomal 49.5 66 0.0014 22.2 5.3 47 48-95 30-81 (99)
198 PF12623 Hen1_L: RNA repair, l 49.0 44 0.00095 26.8 4.9 62 37-99 118-183 (245)
199 PF05189 RTC_insert: RNA 3'-te 48.9 67 0.0015 21.9 5.4 48 39-86 12-64 (103)
200 CHL00030 rpl23 ribosomal prote 48.6 56 0.0012 22.3 4.8 34 39-72 20-55 (93)
201 PF11491 DUF3213: Protein of u 48.4 57 0.0012 21.8 4.6 67 40-113 3-73 (88)
202 PF00276 Ribosomal_L23: Riboso 48.4 17 0.00036 24.6 2.2 32 39-70 21-54 (91)
203 PTZ00071 40S ribosomal protein 47.3 62 0.0014 23.6 5.1 47 48-95 35-87 (132)
204 smart00195 DSPc Dual specifici 47.0 70 0.0015 22.6 5.6 27 39-67 7-33 (138)
205 TIGR00387 glcD glycolate oxida 46.9 73 0.0016 27.7 6.5 63 37-100 131-198 (413)
206 PF03439 Spt5-NGN: Early trans 45.9 26 0.00056 23.2 2.8 26 78-103 43-68 (84)
207 PF05036 SPOR: Sporulation rel 45.9 3.9 8.5E-05 25.8 -1.2 61 37-100 4-65 (76)
208 TIGR01033 DNA-binding regulato 45.8 85 0.0018 25.3 6.3 46 35-87 92-143 (238)
209 PRK12280 rplW 50S ribosomal pr 44.8 65 0.0014 24.3 5.1 33 39-71 23-57 (158)
210 PRK10905 cell division protein 44.6 53 0.0011 27.7 4.9 63 36-103 246-310 (328)
211 PRK02886 hypothetical protein; 44.5 52 0.0011 22.2 4.1 39 57-104 20-58 (87)
212 COG0225 MsrA Peptide methionin 44.1 54 0.0012 25.1 4.6 73 39-115 59-136 (174)
213 COG0030 KsgA Dimethyladenosine 43.9 32 0.0007 28.1 3.6 32 37-68 95-126 (259)
214 PRK02302 hypothetical protein; 43.9 55 0.0012 22.2 4.1 38 57-103 22-59 (89)
215 PF13291 ACT_4: ACT domain; PD 43.8 84 0.0018 20.0 6.8 64 39-102 8-72 (80)
216 KOG0151 Predicted splicing reg 43.6 13 0.00029 34.5 1.4 14 187-200 860-873 (877)
217 cd04904 ACT_AAAH ACT domain of 43.4 85 0.0018 19.9 7.5 50 50-101 13-65 (74)
218 PF01282 Ribosomal_S24e: Ribos 43.4 97 0.0021 20.6 6.7 46 48-94 12-62 (84)
219 PRK04199 rpl10e 50S ribosomal 42.9 1.5E+02 0.0033 22.7 7.5 65 36-107 80-159 (172)
220 TIGR00110 ilvD dihydroxy-acid 42.7 1.4E+02 0.003 27.2 7.6 37 78-117 382-418 (535)
221 COG5507 Uncharacterized conser 42.7 31 0.00066 23.8 2.8 20 80-99 67-86 (117)
222 PRK05738 rplW 50S ribosomal pr 42.5 1E+02 0.0022 20.9 5.4 33 39-71 21-55 (92)
223 KOG2135 Proteins containing th 42.3 20 0.00042 31.8 2.2 52 47-105 207-258 (526)
224 PF11411 DNA_ligase_IV: DNA li 42.2 20 0.00043 19.9 1.5 16 47-62 19-34 (36)
225 PF04127 DFP: DNA / pantothena 41.8 94 0.002 23.9 5.8 59 39-99 20-79 (185)
226 PF09383 NIL: NIL domain; Int 41.4 46 0.001 21.2 3.5 55 48-102 13-69 (76)
227 KOG0107 Alternative splicing f 41.4 1.6E+02 0.0035 22.7 6.7 9 88-96 59-67 (195)
228 PF11823 DUF3343: Protein of u 41.3 40 0.00087 21.5 3.1 25 81-105 3-27 (73)
229 COG5584 Predicted small secret 41.2 62 0.0014 22.2 4.0 31 44-74 29-59 (103)
230 PF08442 ATP-grasp_2: ATP-gras 40.8 70 0.0015 25.0 5.0 54 49-105 25-81 (202)
231 PF14111 DUF4283: Domain of un 40.1 10 0.00022 27.6 0.2 71 39-115 17-90 (153)
232 cd04878 ACT_AHAS N-terminal AC 39.8 83 0.0018 18.8 7.5 61 39-101 2-64 (72)
233 PF00585 Thr_dehydrat_C: C-ter 39.6 92 0.002 20.9 4.9 62 39-102 11-74 (91)
234 PTZ00191 60S ribosomal protein 39.5 90 0.002 23.2 5.0 56 39-97 83-140 (145)
235 PF00398 RrnaAD: Ribosomal RNA 39.4 28 0.0006 28.2 2.6 28 37-64 97-126 (262)
236 smart00666 PB1 PB1 domain. Pho 38.8 1E+02 0.0023 19.6 6.5 57 39-100 11-69 (81)
237 COG5236 Uncharacterized conser 38.1 87 0.0019 26.8 5.3 52 50-109 263-314 (493)
238 PF14401 RLAN: RimK-like ATPgr 37.0 74 0.0016 23.7 4.4 60 36-95 86-146 (153)
239 COG0217 Uncharacterized conser 36.8 1.7E+02 0.0038 23.6 6.6 46 35-87 92-143 (241)
240 PRK11558 putative ssRNA endonu 36.2 76 0.0016 21.9 3.9 49 37-88 27-75 (97)
241 KOG1999 RNA polymerase II tran 35.8 92 0.002 30.3 5.6 28 78-105 209-236 (1024)
242 cd04908 ACT_Bt0572_1 N-termina 35.8 1E+02 0.0023 18.7 8.3 44 50-97 14-58 (66)
243 PRK00911 dihydroxy-acid dehydr 35.4 2E+02 0.0043 26.3 7.5 38 78-118 397-434 (552)
244 COG4010 Uncharacterized protei 34.8 1.3E+02 0.0029 22.3 5.2 46 44-99 118-163 (170)
245 KOG0226 RNA-binding proteins [ 34.6 19 0.00041 29.3 0.9 78 34-112 93-173 (290)
246 PRK00110 hypothetical protein; 34.6 1.6E+02 0.0035 23.8 6.3 46 35-87 92-143 (245)
247 PF01071 GARS_A: Phosphoribosy 34.3 1E+02 0.0023 24.0 5.0 46 50-99 25-70 (194)
248 COG5470 Uncharacterized conser 34.1 86 0.0019 21.5 3.9 41 54-96 25-70 (96)
249 PHA01632 hypothetical protein 33.4 36 0.00079 20.8 1.8 20 41-60 20-39 (64)
250 CHL00123 rps6 ribosomal protei 33.2 1.3E+02 0.0029 20.4 4.9 52 46-97 15-80 (97)
251 TIGR00755 ksgA dimethyladenosi 33.1 59 0.0013 26.0 3.6 25 39-63 96-120 (253)
252 PLN02805 D-lactate dehydrogena 32.7 2E+02 0.0044 26.2 7.2 51 49-100 278-332 (555)
253 PRK12448 dihydroxy-acid dehydr 32.3 2.3E+02 0.005 26.3 7.4 37 79-118 448-484 (615)
254 TIGR00405 L26e_arch ribosomal 32.1 1.4E+02 0.0031 21.6 5.3 26 78-103 37-62 (145)
255 PF06919 Phage_T4_Gp30_7: Phag 32.0 79 0.0017 22.1 3.5 45 60-118 28-72 (121)
256 KOG2854 Possible pfkB family c 31.8 57 0.0012 27.7 3.3 61 36-97 159-230 (343)
257 PF04026 SpoVG: SpoVG; InterP 31.8 1.1E+02 0.0023 20.5 4.0 26 63-88 2-27 (84)
258 KOG3346 Phosphatidylethanolami 31.7 1.2E+02 0.0026 23.5 4.8 43 38-89 87-131 (185)
259 cd04880 ACT_AAAH-PDT-like ACT 31.7 1.3E+02 0.0029 18.7 7.3 51 50-101 12-66 (75)
260 PRK00274 ksgA 16S ribosomal RN 31.6 57 0.0012 26.6 3.3 22 39-60 107-128 (272)
261 PF02829 3H: 3H domain; Inter 31.4 1.8E+02 0.0038 20.0 6.6 53 47-102 7-59 (98)
262 PF01762 Galactosyl_T: Galacto 31.2 61 0.0013 24.7 3.3 56 37-100 21-79 (195)
263 COG0129 IlvD Dihydroxyacid deh 30.5 2.7E+02 0.0058 25.7 7.4 33 84-118 419-451 (575)
264 cd04879 ACT_3PGDH-like ACT_3PG 30.5 1.2E+02 0.0026 17.9 6.1 32 40-71 2-34 (71)
265 PF01037 AsnC_trans_reg: AsnC 30.4 1.3E+02 0.0029 18.4 7.5 45 50-98 11-55 (74)
266 PRK12378 hypothetical protein; 30.0 1.6E+02 0.0035 23.7 5.5 46 35-87 89-140 (235)
267 cd06404 PB1_aPKC PB1 domain is 29.6 1.8E+02 0.0038 19.5 6.6 55 39-100 10-69 (83)
268 TIGR01873 cas_CT1978 CRISPR-as 29.5 51 0.0011 22.2 2.2 49 37-88 25-74 (87)
269 smart00650 rADc Ribosomal RNA 29.4 84 0.0018 23.3 3.7 23 38-60 78-100 (169)
270 smart00738 NGN In Spt5p, this 29.4 1.1E+02 0.0023 20.6 3.9 23 80-102 60-82 (106)
271 PRK06737 acetolactate synthase 29.2 1.7E+02 0.0036 19.1 7.9 61 39-102 6-67 (76)
272 PHA03008 hypothetical protein; 29.1 95 0.0021 24.4 3.9 39 33-71 17-55 (234)
273 PF05573 NosL: NosL; InterPro 28.8 82 0.0018 23.2 3.5 24 79-102 114-137 (149)
274 cd04903 ACT_LSD C-terminal ACT 28.7 1.3E+02 0.0029 17.8 5.8 48 50-100 12-60 (71)
275 PF14026 DUF4242: Protein of u 28.7 1.7E+02 0.0037 19.0 7.7 61 40-103 3-70 (77)
276 PTZ00338 dimethyladenosine tra 28.6 59 0.0013 27.0 2.9 22 39-60 103-124 (294)
277 cd04889 ACT_PDH-BS-like C-term 28.5 1.3E+02 0.0028 17.5 6.3 42 52-96 13-55 (56)
278 KOG1888 Putative phosphoinosit 27.9 2E+02 0.0044 27.5 6.3 65 39-109 311-378 (868)
279 PF09122 DUF1930: Domain of un 27.9 1.6E+02 0.0035 18.6 4.0 41 30-70 13-55 (68)
280 cd06405 PB1_Mekk2_3 The PB1 do 27.8 1.8E+02 0.0039 19.0 7.3 60 44-112 15-75 (79)
281 KOG0862 Synaptobrevin/VAMP-lik 27.7 33 0.00072 27.2 1.2 13 77-89 107-119 (216)
282 PF13046 DUF3906: Protein of u 27.5 77 0.0017 20.0 2.6 32 51-84 32-63 (64)
283 PRK06131 dihydroxy-acid dehydr 27.0 3.6E+02 0.0079 24.8 7.7 37 79-118 401-439 (571)
284 PF07876 Dabb: Stress responsi 26.9 1.9E+02 0.004 18.9 6.8 56 40-95 4-70 (97)
285 PF15063 TC1: Thyroid cancer p 26.9 36 0.00078 22.3 1.0 26 39-64 27-52 (79)
286 PRK13011 formyltetrahydrofolat 26.8 1.7E+02 0.0037 24.2 5.4 61 44-105 56-116 (286)
287 PF14111 DUF4283: Domain of un 26.8 61 0.0013 23.4 2.5 34 38-71 105-139 (153)
288 PRK11633 cell division protein 26.7 2.7E+02 0.0059 22.2 6.3 71 37-109 149-221 (226)
289 KOG1232 Proteins containing th 26.6 90 0.002 27.2 3.6 53 43-96 230-286 (511)
290 PF13193 AMP-binding_C: AMP-bi 26.6 1.6E+02 0.0036 18.2 5.3 51 53-105 1-54 (73)
291 KOG3671 Actin regulatory prote 26.5 1.4E+02 0.003 26.9 4.9 49 49-102 90-138 (569)
292 COG0045 SucC Succinyl-CoA synt 26.4 2.9E+02 0.0063 24.0 6.7 64 49-115 26-96 (387)
293 COG1691 NCAIR mutase (PurE)-re 26.4 53 0.0012 26.4 2.1 55 44-99 14-69 (254)
294 PF01842 ACT: ACT domain; Int 26.2 1.5E+02 0.0032 17.5 5.3 47 50-99 13-61 (66)
295 cd00127 DSPc Dual specificity 25.9 2E+02 0.0042 20.1 5.0 18 38-55 7-24 (139)
296 PRK07868 acyl-CoA synthetase; 25.8 5E+02 0.011 25.5 9.1 57 48-104 868-929 (994)
297 PF13820 Nucleic_acid_bd: Puta 25.5 1.2E+02 0.0026 22.6 3.8 59 39-101 6-67 (149)
298 PF12687 DUF3801: Protein of u 25.2 2E+02 0.0044 22.5 5.3 57 49-107 39-98 (204)
299 PRK12450 foldase protein PrsA; 25.1 1.4E+02 0.0031 24.9 4.6 39 48-100 132-170 (309)
300 KOG0829 60S ribosomal protein 25.0 2.1E+02 0.0045 21.5 4.9 60 31-90 11-81 (169)
301 PRK13259 regulatory protein Sp 24.9 1.4E+02 0.0031 20.4 3.8 26 63-88 2-27 (94)
302 PF05336 DUF718: Domain of unk 24.9 1.8E+02 0.0039 20.0 4.4 41 51-94 25-65 (106)
303 TIGR01743 purR_Bsub pur operon 24.7 1.7E+02 0.0036 24.1 4.8 40 53-99 44-85 (268)
304 cd04894 ACT_ACR-like_1 ACT dom 24.5 1.9E+02 0.0041 18.4 3.9 38 44-87 6-45 (69)
305 PLN02707 Soluble inorganic pyr 23.7 46 0.00099 27.4 1.4 42 51-101 207-249 (267)
306 cd04882 ACT_Bt0572_2 C-termina 23.6 1.7E+02 0.0036 17.2 5.8 45 51-97 13-58 (65)
307 KOG2855 Ribokinase [Carbohydra 23.6 1.2E+02 0.0027 25.7 3.9 47 36-86 60-107 (330)
308 PRK09213 pur operon repressor; 23.5 1.7E+02 0.0037 24.1 4.7 41 53-100 46-88 (271)
309 PRK14046 malate--CoA ligase su 23.5 3.3E+02 0.0071 23.6 6.7 52 50-104 27-81 (392)
310 TIGR00587 nfo apurinic endonuc 23.4 1.7E+02 0.0037 23.7 4.8 58 37-100 137-202 (274)
311 cd04931 ACT_PAH ACT domain of 23.4 2.4E+02 0.0051 18.9 8.0 60 40-101 16-80 (90)
312 cd04909 ACT_PDH-BS C-terminal 23.4 1.8E+02 0.0039 17.6 7.7 48 50-99 14-62 (69)
313 PLN00168 Cytochrome P450; Prov 22.8 2.9E+02 0.0064 24.5 6.5 51 39-98 43-98 (519)
314 PF12829 Mhr1: Transcriptional 21.7 1.2E+02 0.0025 20.7 2.8 21 80-100 52-72 (91)
315 PLN02655 ent-kaurene oxidase 21.6 1.8E+02 0.004 25.3 4.9 48 41-97 9-59 (466)
316 COG5594 Uncharacterized integr 21.6 97 0.0021 29.5 3.2 21 79-99 357-377 (827)
317 cd04905 ACT_CM-PDT C-terminal 21.6 2.3E+02 0.0049 18.0 7.4 51 50-101 14-68 (80)
318 PF02426 MIase: Muconolactone 21.6 2.7E+02 0.0058 18.8 7.3 58 43-104 9-76 (91)
319 KOG3432 Vacuolar H+-ATPase V1 21.5 79 0.0017 22.3 2.0 24 47-70 43-66 (121)
320 PRK13016 dihydroxy-acid dehydr 21.4 4.9E+02 0.011 24.0 7.5 38 78-118 405-444 (577)
321 PF13037 DUF3898: Domain of un 21.4 1.2E+02 0.0025 20.5 2.7 50 50-99 32-89 (91)
322 PF03389 MobA_MobL: MobA/MobL 21.2 2.6E+02 0.0056 22.0 5.2 47 39-88 69-123 (216)
323 PF06014 DUF910: Bacterial pro 21.1 75 0.0016 20.0 1.7 17 50-66 3-19 (62)
324 PF07045 DUF1330: Protein of u 21.0 2.2E+02 0.0047 17.5 4.9 43 53-97 10-57 (65)
325 cd04902 ACT_3PGDH-xct C-termin 21.0 2.1E+02 0.0045 17.3 5.4 53 48-102 10-65 (73)
326 COG0002 ArgC Acetylglutamate s 20.9 1.9E+02 0.0041 24.8 4.5 27 45-71 253-280 (349)
327 PF09250 Prim-Pol: Bifunctiona 20.8 2.9E+02 0.0062 20.0 5.2 36 49-90 32-67 (163)
328 COG1207 GlmU N-acetylglucosami 20.6 3.5E+02 0.0076 24.0 6.1 67 36-102 96-174 (460)
329 PF09341 Pcc1: Transcription f 20.6 1.5E+02 0.0034 18.8 3.2 19 81-99 4-22 (76)
330 cd04929 ACT_TPH ACT domain of 20.4 2.5E+02 0.0054 17.9 8.0 52 50-102 13-66 (74)
No 1
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=154.76 Aligned_cols=89 Identities=30% Similarity=0.475 Sum_probs=83.1
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
|...+..+.|.|-||.+.|+.++|..+|++||.|.+|.|+.++.|++++|||||.|.+..+|+.||+.|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44555677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCC
Q 028972 111 VEKAKRSRG 119 (201)
Q Consensus 111 V~~a~~~~~ 119 (201)
|++|+....
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999987654
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.89 E-value=5.5e-22 Score=147.56 Aligned_cols=87 Identities=28% Similarity=0.401 Sum_probs=81.6
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.....++|||+|||+++++++|+++|++||+|..|.|+.++.+++++|||||+|++.++|++||+.||++.|+|+.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 028972 113 KAKRSRG 119 (201)
Q Consensus 113 ~a~~~~~ 119 (201)
++..+..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9987653
No 3
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.7e-21 Score=143.68 Aligned_cols=80 Identities=30% Similarity=0.507 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
+-.++|||+||+..+++.||+.+|.+||.|..|+|...+ .|||||||+++.+|+.|+..|+|..|.|..|.|++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999998754 589999999999999999999999999999999998
Q ss_pred ccCCC
Q 028972 115 KRSRG 119 (201)
Q Consensus 115 ~~~~~ 119 (201)
+....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 87653
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=8.6e-19 Score=140.01 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=87.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.+|-+||||+-|+.+++|..|+..|++||+|+.|.|+.++.||+++|||||+|+++.++++|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCC
Q 028972 114 AKRSRGRTPTPGHYHGL 130 (201)
Q Consensus 114 a~~~~~~~~~~~~~~~~ 130 (201)
......+..-+...+|+
T Consensus 178 ERgRTvkgW~PRRLGGG 194 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLGGG 194 (335)
T ss_pred cccccccccccccccCC
Confidence 88776665555444443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=8.1e-19 Score=148.15 Aligned_cols=84 Identities=26% Similarity=0.393 Sum_probs=79.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+.+|||+|||.++++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8774
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=7.1e-19 Score=147.98 Aligned_cols=85 Identities=31% Similarity=0.495 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
......++|||+|||+++|+++|+++|++||+|+.|.|+.++.+++++|||||+|.++++|+.||+.||+++|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q 028972 112 EKAKR 116 (201)
Q Consensus 112 ~~a~~ 116 (201)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98764
No 7
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=5.5e-19 Score=126.27 Aligned_cols=91 Identities=29% Similarity=0.401 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
...|.-...++.|||.+|..++|+++|.+.|..||+|++|.+.++..||..+|||+|+|++.++|++||..|||..|.|+
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 44566677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecccCC
Q 028972 108 LITVEKAKRSR 118 (201)
Q Consensus 108 ~i~V~~a~~~~ 118 (201)
.|.|.|+..+.
T Consensus 143 ~v~VDw~Fv~g 153 (170)
T KOG0130|consen 143 NVSVDWCFVKG 153 (170)
T ss_pred ceeEEEEEecC
Confidence 99999998764
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=3.4e-18 Score=111.09 Aligned_cols=70 Identities=34% Similarity=0.600 Sum_probs=66.7
Q ss_pred EEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
|||+|||.++++++|.++|.+||.|..+.+..+ .++...+||||+|++.++|++||+.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 5788999999999999999999999999999999885
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.6e-18 Score=145.07 Aligned_cols=83 Identities=30% Similarity=0.478 Sum_probs=78.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+.++|||+|||..+++++|+++|.+||+|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.3e-17 Score=140.35 Aligned_cols=84 Identities=32% Similarity=0.493 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eeeEEee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG--RLITVEK 113 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g--~~i~V~~ 113 (201)
..++|||+|||..+++++|+++|++||+|+.|.|+.++.+++++|||||+|++.++|++||+.||++.|.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999999899999999999999999999999999999866 6899999
Q ss_pred cccCCC
Q 028972 114 AKRSRG 119 (201)
Q Consensus 114 a~~~~~ 119 (201)
|.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 887643
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=5.3e-18 Score=120.20 Aligned_cols=84 Identities=23% Similarity=0.414 Sum_probs=79.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+...+++|||+||+..++|++|.++|.++|+|..|.|-.++.+..++|||||+|.+.++|+.||+.++|+.|+.++|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 028972 113 KAKR 116 (201)
Q Consensus 113 ~a~~ 116 (201)
|...
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8543
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.7e-17 Score=129.43 Aligned_cols=82 Identities=37% Similarity=0.434 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..++|-|.||+.++++++|+++|.+||.|..|.|..++.||.++|||||.|.+.++|++||..|||+-++...|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 028972 116 RS 117 (201)
Q Consensus 116 ~~ 117 (201)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.72 E-value=9.3e-17 Score=140.18 Aligned_cols=83 Identities=28% Similarity=0.461 Sum_probs=77.6
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
+.+..+|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||. |+|..|.|.+|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457799999999999999999999999999999999999999999999999999999999998 999999999999998
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7654
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.71 E-value=1.2e-16 Score=104.31 Aligned_cols=70 Identities=33% Similarity=0.609 Sum_probs=64.7
Q ss_pred EEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
|||+|||+.+++++|.++|+.||.|..|.+..++. +..+++|||+|.++++|+.|++.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999874
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=7.3e-17 Score=125.33 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
-+..-++|||+||+|++..++|..+|++||+|++..|+.|+.+++++||+||+|.+.+.|..||+. ..-+|+|++..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 345567899999999999999999999999999999999999999999999999999999999984 4456899998888
Q ss_pred eccc
Q 028972 113 KAKR 116 (201)
Q Consensus 113 ~a~~ 116 (201)
+|--
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8754
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=3.7e-16 Score=138.08 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
....+|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccC
Q 028972 115 KRS 117 (201)
Q Consensus 115 ~~~ 117 (201)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=4.6e-16 Score=138.19 Aligned_cols=85 Identities=21% Similarity=0.450 Sum_probs=79.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
...++|||+|||.++++++|+++|+.||+|..|.|+.++.++.++|||||+|++.++|.+||+.||+..|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34578999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 028972 115 KRSRG 119 (201)
Q Consensus 115 ~~~~~ 119 (201)
..+..
T Consensus 282 i~pP~ 286 (612)
T TIGR01645 282 VTPPD 286 (612)
T ss_pred CCCcc
Confidence 87543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=3.5e-16 Score=124.89 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=70.9
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
..+|||+|||+.+++++|+++|+.||+|..|.|+.+.. .+|||||+|+++++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56899999999999999999999999999999988753 46899999999999999996 999999999999999864
Q ss_pred C
Q 028972 117 S 117 (201)
Q Consensus 117 ~ 117 (201)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 19
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.9e-16 Score=118.07 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..+.|||+|||.++.+.+|+++|-+||.|.+|.|...+ .+..||||+|+++.+|+.||..-+|..++|..|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45789999999999999999999999999999886543 244699999999999999999999999999999999988
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 765
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=4.9e-16 Score=135.65 Aligned_cols=82 Identities=32% Similarity=0.467 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
...+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+|.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cC
Q 028972 116 RS 117 (201)
Q Consensus 116 ~~ 117 (201)
..
T Consensus 265 ~~ 266 (457)
T TIGR01622 265 DS 266 (457)
T ss_pred CC
Confidence 43
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=3.3e-16 Score=126.77 Aligned_cols=83 Identities=35% Similarity=0.514 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.....+.|||.|||+..-+.||..||++||.|.+|+|+.+. .-++||+||+|++.++|++|-++|||+.|.|++|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34455689999999999999999999999999999998763 4578999999999999999999999999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
.|+..
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98754
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=4.1e-16 Score=138.50 Aligned_cols=82 Identities=27% Similarity=0.398 Sum_probs=77.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
....++|||+|||+.+++++|+++|.+||+|..|.|+.++.+++++|||||+|.+.++|+.||+.|||..|+|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cc
Q 028972 114 AK 115 (201)
Q Consensus 114 a~ 115 (201)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 44
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.65 E-value=1.3e-15 Score=98.21 Aligned_cols=72 Identities=38% Similarity=0.596 Sum_probs=66.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+|||.|||..+++++|.++|.+||+|..+.+..++ +.+.++|||+|.+.++|+.|++.|++..|.|..|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988765 6788999999999999999999999999999998873
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.65 E-value=5.5e-16 Score=131.46 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=72.9
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCH--HHHHHHHHHhCCCeeCCeeeE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETV--EGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--~~a~~al~~l~g~~l~g~~i~ 110 (201)
....+.+||||||++.+++++|..+|..||.|..|.|+. .+| +|||||+|.+. +++.+||..|||..|+|..|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 345667999999999999999999999999999999994 466 89999999987 789999999999999999999
Q ss_pred Eeeccc
Q 028972 111 VEKAKR 116 (201)
Q Consensus 111 V~~a~~ 116 (201)
|..|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999875
No 25
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2e-17 Score=123.89 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+.-|||+|||+++||.||..+|++||+|++|.++.++.||+++||||+.|++......|+..|||..|.|+.|.|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 028972 115 K 115 (201)
Q Consensus 115 ~ 115 (201)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.4e-15 Score=136.05 Aligned_cols=79 Identities=30% Similarity=0.473 Sum_probs=75.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
.|||+|||.++|+++|.++|.+||+|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.|+.|.|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999997643
No 27
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.6e-15 Score=118.28 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+.+|||+||++.+|+++|++||+.||+|..|.|+.+.. ..+||||+|+++++|+.||. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 3568999999999999999999999999999999998743 34799999999999999997 9999999999999876
Q ss_pred cc
Q 028972 115 KR 116 (201)
Q Consensus 115 ~~ 116 (201)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=2.3e-15 Score=134.67 Aligned_cols=84 Identities=31% Similarity=0.515 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.....+|||+||+..+++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred cccCC
Q 028972 114 AKRSR 118 (201)
Q Consensus 114 a~~~~ 118 (201)
|..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98653
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=1.8e-15 Score=134.01 Aligned_cols=80 Identities=28% Similarity=0.439 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeeeEEe
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITVE 112 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~-g~~i~V~ 112 (201)
....++|||+|||.+++|++|.++|++||+|..|.|+.+ .+++++|||||+|.+.++|++||+.||+.+|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 68999999999999999999999999999884 6666665
Q ss_pred ec
Q 028972 113 KA 114 (201)
Q Consensus 113 ~a 114 (201)
++
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 44
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.62 E-value=3.1e-15 Score=96.01 Aligned_cols=71 Identities=38% Similarity=0.593 Sum_probs=66.8
Q ss_pred EeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 42 VTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 42 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
|+|||..+++++|+++|++||.|..|.+..++.++.++|+|||+|.+.++|..|++.|++..|+|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888778999999999999999999999999999999998873
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.4e-15 Score=126.00 Aligned_cols=83 Identities=31% Similarity=0.451 Sum_probs=77.4
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee-CCeeeEEe
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL-EGRLITVE 112 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l-~g~~i~V~ 112 (201)
.+.++.|||+.||.++.|++|..+|++.|+|-++.|+.++.+|.++|||||.|.+.++|++||+.||+++| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 36788999999999999999999999999999999999999999999999999999999999999999988 68888887
Q ss_pred eccc
Q 028972 113 KAKR 116 (201)
Q Consensus 113 ~a~~ 116 (201)
.+..
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 6543
No 32
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-16 Score=119.89 Aligned_cols=86 Identities=35% Similarity=0.449 Sum_probs=81.6
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.....+|||++|..++++..|...|-.||.|..|.|+.+..+++++|||||+|+..|+|.+||..||+.+|.|+.|.|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 028972 114 AKRSRG 119 (201)
Q Consensus 114 a~~~~~ 119 (201)
|++.+-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998754
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.2e-15 Score=116.69 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
..+.+++|||+||+..+++++|++.|..||.|.+|.+.+++ |||||.|++.|.|..||..||+++|.|+.+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 34668899999999999999999999999999999999886 799999999999999999999999999999999
Q ss_pred ecccCCC
Q 028972 113 KAKRSRG 119 (201)
Q Consensus 113 ~a~~~~~ 119 (201)
|-+....
T Consensus 234 WGKe~~~ 240 (321)
T KOG0148|consen 234 WGKEGDD 240 (321)
T ss_pred ccccCCC
Confidence 9887654
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.60 E-value=1.4e-15 Score=114.02 Aligned_cols=83 Identities=36% Similarity=0.476 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+.+...+|||+||+..++++.|.++|-+.|+|.++.|+.++.+...+|||||+|.++++|+-||+.||...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 028972 113 KAK 115 (201)
Q Consensus 113 ~a~ 115 (201)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 35
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.59 E-value=2e-14 Score=93.12 Aligned_cols=74 Identities=41% Similarity=0.594 Sum_probs=68.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
+|+|.|||..+++++|.++|+.||.|..+.+..++.+ .+.++|||+|.+.++|+.|++.+++..++|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 6788999999999999999999999999999998864
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=8.5e-15 Score=117.41 Aligned_cols=80 Identities=43% Similarity=0.603 Sum_probs=76.9
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
..+|||+|||..+++++|.++|.+||.|..|.|+.++.++..+|||||+|.+.++|..||+.|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999754
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=9.2e-15 Score=129.59 Aligned_cols=76 Identities=36% Similarity=0.398 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCC--CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGE--GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
....+|||+||+.++++++|+++|++| |+|+.|.++. +||||+|++.++|++||+.||+++|+|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445789999999999999999999999 9999998764 499999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
||++..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 998764
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.7e-15 Score=117.36 Aligned_cols=84 Identities=29% Similarity=0.432 Sum_probs=80.3
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
.....|||+-|..+++-++|++.|.+||+|.+++|+.|..|++++||+||.|-+.++|+.||+.|||.-|+++.|...||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
..+.
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 8876
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=98.61 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
++..+..|||.|||..+|.+++.++|.+||.|..|.|-.++. .+|.|||.|++..+|+.|++.|+|..+.+..|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 444567899999999999999999999999999999987654 46899999999999999999999999999999998
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
+.++.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 76543
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.58 E-value=1.6e-14 Score=127.13 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=73.4
Q ss_pred CCCCCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 34 ANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 34 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.+++++|||+||++ .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45778999999997 69999999999999999999998763 4899999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+++...
T Consensus 347 ~s~~~~ 352 (481)
T TIGR01649 347 PSKQQN 352 (481)
T ss_pred Eccccc
Confidence 987654
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.4e-14 Score=114.31 Aligned_cols=86 Identities=31% Similarity=0.494 Sum_probs=81.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.+...+.|.|.-||..+|+++|+.+|...|+|+.|+++.|+.+|++.||+||.|-++++|++||..|||..|..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
||.+..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 998754
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.56 E-value=3.9e-15 Score=118.92 Aligned_cols=72 Identities=32% Similarity=0.558 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
.+|||+|||.++++.+|+.+|++||+|++|.|+++ ||||..++...|+.||..||+.+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999975 9999999999999999999999999999999998877
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=124.86 Aligned_cols=82 Identities=28% Similarity=0.460 Sum_probs=79.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
..|||+|||+++++++|.++|+..|.|..+.++.|+.||+++||||++|.+.++|+.|++.|||.++.|..|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 028972 118 RG 119 (201)
Q Consensus 118 ~~ 119 (201)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.8e-14 Score=112.62 Aligned_cols=85 Identities=29% Similarity=0.384 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.+..++.|||-||.++++|..|+++|..||.|.+|+|+.|..|.+++||+||.+.+-++|..||..|||..|+++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34558899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
|...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87654
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=5.9e-15 Score=123.28 Aligned_cols=85 Identities=31% Similarity=0.465 Sum_probs=77.9
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCC--eeeEE
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV-LEG--RLITV 111 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~-l~g--~~i~V 111 (201)
....+|||+.|+..+||.+|+++|.+||.|++|.|+.+. .+.++|||||.|.+.+.|..||+.|||+. +.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 446789999999999999999999999999999999987 79999999999999999999999999985 555 68999
Q ss_pred eecccCCCC
Q 028972 112 EKAKRSRGR 120 (201)
Q Consensus 112 ~~a~~~~~~ 120 (201)
.||..++++
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999988765
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=120.85 Aligned_cols=97 Identities=28% Similarity=0.394 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 24 SRSRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 24 ~~~~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
..+......++....+|||+-||..++|.||+++|++||.|.+|.|++|+.|+..+|||||.|.+.++|.+|+..||+..
T Consensus 21 ~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 21 NGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred cCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence 34444555556677799999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -eCC--eeeEEeecccCCCC
Q 028972 104 -LEG--RLITVEKAKRSRGR 120 (201)
Q Consensus 104 -l~g--~~i~V~~a~~~~~~ 120 (201)
|-| .+|.|.+|....++
T Consensus 101 tlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 101 TLPGMHHPVQVKYADGERER 120 (510)
T ss_pred ccCCCCcceeecccchhhhc
Confidence 544 68899998876644
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.3e-14 Score=121.68 Aligned_cols=78 Identities=32% Similarity=0.385 Sum_probs=71.6
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
....-..|||.||+.+||++.|+++|.+||.|+.|+.+.| ||||.|.+.++|.+||+.|||++|+|..|.|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 3444567999999999999999999999999999988765 99999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+|++..
T Consensus 327 LAKP~~ 332 (506)
T KOG0117|consen 327 LAKPVD 332 (506)
T ss_pred ecCChh
Confidence 998764
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=4e-14 Score=124.59 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh--CCCeeCCeeeEEee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL--NRSVLEGRLITVEK 113 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l--~g~~l~g~~i~V~~ 113 (201)
|+.+|||+|||+.+++++|.++|++||+|..|.|+.++ +||||+|++.++|++||+.| ++..|.|+.|.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 46789999999999999999999999999999988643 69999999999999999864 77899999999999
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.9e-14 Score=122.25 Aligned_cols=84 Identities=26% Similarity=0.487 Sum_probs=77.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.+.|+|.|||+.+.+.+|+.+|+.||.|..|.|+..+ .++-+|||||.|....+|..||+.||++.|+|++|.|.|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 4457899999999999999999999999999999999766 455569999999999999999999999999999999999
Q ss_pred cccCC
Q 028972 114 AKRSR 118 (201)
Q Consensus 114 a~~~~ 118 (201)
|..+.
T Consensus 193 AV~Kd 197 (678)
T KOG0127|consen 193 AVDKD 197 (678)
T ss_pred ecccc
Confidence 98764
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3.1e-14 Score=121.99 Aligned_cols=88 Identities=30% Similarity=0.459 Sum_probs=80.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh-----CC-Cee
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL-----NR-SVL 104 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l-----~g-~~l 104 (201)
+++...+.+|||.|||+++|+++|.++|.+||+|.++.|+.++.|+.++|+|||.|.++.+|+.||... .| ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 566677899999999999999999999999999999999999999999999999999999999999866 33 568
Q ss_pred CCeeeEEeecccCC
Q 028972 105 EGRLITVEKAKRSR 118 (201)
Q Consensus 105 ~g~~i~V~~a~~~~ 118 (201)
+|+.|.|..|..+.
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999987654
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-14 Score=117.95 Aligned_cols=85 Identities=28% Similarity=0.518 Sum_probs=81.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
+..+|.+.|||..|.+-+|.++|+-+|+.||.|..|.|+.+..||.+..||||+|++.+.|++|.-+|++..|+...|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q 028972 112 EKAKR 116 (201)
Q Consensus 112 ~~a~~ 116 (201)
.|++.
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 98753
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.53 E-value=2.9e-13 Score=113.52 Aligned_cols=86 Identities=20% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHc-CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFG-GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
...+......+||.|||+++.|++|+++|. +.|+|++|.++.|. .++++|||.|||+++|.+++|++.||.+.|+|+.
T Consensus 37 ~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~ 115 (608)
T KOG4212|consen 37 GGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRE 115 (608)
T ss_pred CCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCce
Confidence 334445555699999999999999999995 68999999999986 8999999999999999999999999999999999
Q ss_pred eEEeeccc
Q 028972 109 ITVEKAKR 116 (201)
Q Consensus 109 i~V~~a~~ 116 (201)
|.|+....
T Consensus 116 l~vKEd~d 123 (608)
T KOG4212|consen 116 LVVKEDHD 123 (608)
T ss_pred EEEeccCc
Confidence 99987654
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.50 E-value=1.8e-13 Score=85.45 Aligned_cols=56 Identities=36% Similarity=0.548 Sum_probs=50.7
Q ss_pred HHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 54 LEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 54 L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
|.++|++||+|..|.+...+ .++|||+|.+.++|+.|++.|||..|.|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997654 479999999999999999999999999999999986
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.8e-14 Score=111.66 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=81.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+.+.+|.|||-.||.+..+.+|..+|-.||.|...++..|..|..+++|+||.|+++..|++||..|||..|+-+.|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+..++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 987765
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.48 E-value=2.2e-13 Score=89.00 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=54.7
Q ss_pred HHHHHHHHc----CCCCeeEEE-EeeCCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 51 NADLEKFFG----GEGKVTECH-LVTDPRT--RESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 51 ~~~L~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
+++|.++|. +||+|..|. |+.++.+ +.++|||||+|.+.++|.+||+.|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 6666656 889999999999999999999999999999999976
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=7.2e-14 Score=111.71 Aligned_cols=90 Identities=28% Similarity=0.452 Sum_probs=80.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|+|+||.+.++.++|++.|++||+|.+|+|+++ |+||.|+-.++|..||..||+++|.|+.|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 346779999999999999999999999999999999875 999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCC
Q 028972 114 AKRSRGRTPTPGHYHGLR 131 (201)
Q Consensus 114 a~~~~~~~~~~~~~~~~~ 131 (201)
+...-...++.+...+.-
T Consensus 147 stsrlrtapgmgDq~~cy 164 (346)
T KOG0109|consen 147 STSRLRTAPGMGDQSGCY 164 (346)
T ss_pred eccccccCCCCCCHHHhe
Confidence 998876666666544433
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.8e-14 Score=115.90 Aligned_cols=77 Identities=29% Similarity=0.440 Sum_probs=74.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
-+.|||+.|.+++.|+.|...|..||+|+.|.|.+|+.|++++|||||+|+-+|.|+.|++.|||..|+|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999873
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.46 E-value=3.4e-13 Score=119.62 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
.++||||++|+..+++.||..+|+.||+|..|.++.. +|||||.+....+|++||.+|..+.|.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3679999999999999999999999999999998864 4799999999999999999999999999999999998
Q ss_pred cCCCC
Q 028972 116 RSRGR 120 (201)
Q Consensus 116 ~~~~~ 120 (201)
.+..+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 77543
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.45 E-value=1.2e-13 Score=118.43 Aligned_cols=83 Identities=34% Similarity=0.472 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
|...|||+||+.++++++|..+|+.||.|..|.+.++..||.++||+||+|.+.++|.+|+++|||.+|.|..|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 33348999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
.+.
T Consensus 357 ~r~ 359 (549)
T KOG0147|consen 357 ERV 359 (549)
T ss_pred eec
Confidence 554
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.40 E-value=9.4e-13 Score=102.12 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHH----HHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEK----FFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
....+..+|||.||+..+..++|+. +|++||+|..|.... +.+.+|-|||.|.+.+.|..|+..|+|..|.|+
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 3445666999999999999988877 999999999988765 667889999999999999999999999999999
Q ss_pred eeEEeecccCCC
Q 028972 108 LITVEKAKRSRG 119 (201)
Q Consensus 108 ~i~V~~a~~~~~ 119 (201)
.+.|+||+.+..
T Consensus 81 ~mriqyA~s~sd 92 (221)
T KOG4206|consen 81 PMRIQYAKSDSD 92 (221)
T ss_pred hhheecccCccc
Confidence 999999987653
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=1e-12 Score=98.69 Aligned_cols=88 Identities=28% Similarity=0.394 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.+...+..|||+||.+++++..|.++|+.||.|.. -.|+.+..||.++|||||.|.+.+.+.+||+.|||..+...+|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 34455689999999999999999999999998765 37888888999999999999999999999999999999999999
Q ss_pred EeecccCCC
Q 028972 111 VEKAKRSRG 119 (201)
Q Consensus 111 V~~a~~~~~ 119 (201)
|.++..+..
T Consensus 171 v~ya~k~~~ 179 (203)
T KOG0131|consen 171 VSYAFKKDT 179 (203)
T ss_pred EEEEEecCC
Confidence 999988753
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.37 E-value=1.9e-12 Score=114.49 Aligned_cols=72 Identities=21% Similarity=0.423 Sum_probs=59.8
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCC------------CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGE------------GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
..+|||+|||+.+|+++|.++|.+| +.|..+.+.. .+|||||+|.+.++|..||. |+|..|
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 5689999999999999999999875 2344444433 45899999999999999996 999999
Q ss_pred CCeeeEEeecc
Q 028972 105 EGRLITVEKAK 115 (201)
Q Consensus 105 ~g~~i~V~~a~ 115 (201)
.|..|+|....
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997543
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=99.97 Aligned_cols=83 Identities=24% Similarity=0.415 Sum_probs=72.1
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCe
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL-NRSVLEGR 107 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l-~g~~l~g~ 107 (201)
..|.++..-.+|||++|-..+++.+|.++|.+||+|..|.++..+ ++|||+|.+.+.|+.|.+++ +...|+|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345566677899999999999999999999999999999988765 59999999999999988755 55568999
Q ss_pred eeEEeecccC
Q 028972 108 LITVEKAKRS 117 (201)
Q Consensus 108 ~i~V~~a~~~ 117 (201)
.|+|.|..+.
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 9999998883
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.27 E-value=2e-11 Score=93.49 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCC-CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGE-GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
+........+||..||.-+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++++.|+-|.+.||+..|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3344455578999999999999999999988 677888888999999999999999999999999999999999999999
Q ss_pred EEeecccC
Q 028972 110 TVEKAKRS 117 (201)
Q Consensus 110 ~V~~a~~~ 117 (201)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 98876554
No 65
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.27 E-value=6e-11 Score=101.47 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=69.9
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+......|||.|||.++++.+|+++|.+||.|+...|..-...++..+||||+|++.++++.||+ .+-..|+++.|.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 33445569999999999999999999999999988776543334444899999999999999999 45777999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
..+...
T Consensus 363 ek~~~~ 368 (419)
T KOG0116|consen 363 EKRPGF 368 (419)
T ss_pred eccccc
Confidence 876654
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.5e-11 Score=104.38 Aligned_cols=79 Identities=30% Similarity=0.519 Sum_probs=73.1
Q ss_pred EEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCCC
Q 028972 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSRG 119 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~~ 119 (201)
|||.||+..++..+|.++|+.||+|+.|++..+. .| .+|| ||+|++++.|++||+.|||..+.++.|.|..+..+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999987 44 8999 9999999999999999999999999999988877654
Q ss_pred CC
Q 028972 120 RT 121 (201)
Q Consensus 120 ~~ 121 (201)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 43
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=101.54 Aligned_cols=89 Identities=22% Similarity=0.388 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
.......+|||++||.++++++|+++|++||.|..+.++.++.+..++||+||.|.+++.+.+++. +.-+.|+++.|.|
T Consensus 92 ~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vev 170 (311)
T KOG4205|consen 92 GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEV 170 (311)
T ss_pred ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeE
Confidence 333456799999999999999999999999999999999999999999999999999999999988 7888999999999
Q ss_pred eecccCCCCC
Q 028972 112 EKAKRSRGRT 121 (201)
Q Consensus 112 ~~a~~~~~~~ 121 (201)
..|.++....
T Consensus 171 krA~pk~~~~ 180 (311)
T KOG4205|consen 171 KRAIPKEVMQ 180 (311)
T ss_pred eeccchhhcc
Confidence 9999886543
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.25 E-value=1.7e-11 Score=106.00 Aligned_cols=84 Identities=42% Similarity=0.674 Sum_probs=77.3
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+..|||.+|...+...+|+.+|++||.|+..+|+.+..+.-.++|+||++.+.++|.+||+.||.++|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34668999999999999999999999999999999988777777889999999999999999999999999999999998
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7654
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.7e-11 Score=106.90 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCC---CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTR---ESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.++|||.||+++++.++|..+|.++|.|..|.|...+... .+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3349999999999999999999999999999887765321 2349999999999999999999999999999999999
Q ss_pred cc
Q 028972 114 AK 115 (201)
Q Consensus 114 a~ 115 (201)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 88
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.9e-11 Score=99.70 Aligned_cols=84 Identities=21% Similarity=0.455 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..-+.|||..++++.+++||+.+|+.||+|..|.+...+.++.++||+||+|.+......||..||-+.|+|+-|.|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999876
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
....
T Consensus 288 vTPP 291 (544)
T KOG0124|consen 288 VTPP 291 (544)
T ss_pred cCCC
Confidence 5443
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.21 E-value=1.6e-11 Score=101.38 Aligned_cols=82 Identities=34% Similarity=0.603 Sum_probs=75.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..++|||++|+++++++.|.+.|.+||+|.+|.++.++.++..+||+||+|++++.+.++|. ...+.|+|+.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67799999999999999999999999999999999999999999999999999999999987 55677999999998887
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
+..
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 765
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.19 E-value=4.8e-11 Score=100.35 Aligned_cols=80 Identities=26% Similarity=0.277 Sum_probs=71.4
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+.+....++|||.|||.++||+.|++-|..||.|.++.|+. .++.+| .|.|.++++|+.|+..|+|..|+|+.|
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 355667788999999999999999999999999999998843 566665 899999999999999999999999999
Q ss_pred EEeec
Q 028972 110 TVEKA 114 (201)
Q Consensus 110 ~V~~a 114 (201)
+|.++
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99874
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.18 E-value=1.1e-10 Score=93.01 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.+.-.++|+|.|||..|+++||+++|+.||+++.+.|..++ .|.+.|.|-|.|...++|.+||+.||+..|+|..|+|.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34445789999999999999999999999988888888776 89999999999999999999999999999999999988
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76544
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.7e-11 Score=93.90 Aligned_cols=73 Identities=33% Similarity=0.595 Sum_probs=67.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
..|||++||+.+.+.+|+.+|.+||.|..|.|.. ||+||+|+++.+|..||..||+.+|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998864 59999999999999999999999999999999998865
Q ss_pred C
Q 028972 118 R 118 (201)
Q Consensus 118 ~ 118 (201)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 4
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=3.6e-11 Score=106.11 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=76.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
.+++|+|.|||+.++..+|+.+|..||.|..|.|+.....+.++|||||+|-++.+|..|+..|..+-|.|+.|.++||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 37899999999999999999999999999999999876677889999999999999999999999999999999999997
Q ss_pred cC
Q 028972 116 RS 117 (201)
Q Consensus 116 ~~ 117 (201)
..
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 65
No 76
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.13 E-value=5.1e-10 Score=77.22 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=71.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCC--CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC----CeeeEE
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGE--GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE----GRLITV 111 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~----g~~i~V 111 (201)
++|.|.|||...|.++|.+++... |....+.++.|..++.+.|||||.|.+++.|....+.++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888653 67888899999999999999999999999999999999999885 577889
Q ss_pred eecccC
Q 028972 112 EKAKRS 117 (201)
Q Consensus 112 ~~a~~~ 117 (201)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998755
No 77
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.3e-10 Score=97.28 Aligned_cols=75 Identities=32% Similarity=0.470 Sum_probs=70.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
..|||+ +++|+..|.++|+.+|+|..|.+..+. | +.|||||.|.++++|+.||+.||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368998 899999999999999999999999998 6 9999999999999999999999999999999999998765
Q ss_pred C
Q 028972 118 R 118 (201)
Q Consensus 118 ~ 118 (201)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 3
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.1e-10 Score=92.78 Aligned_cols=84 Identities=26% Similarity=0.452 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCC--eeeEEe
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV-LEG--RLITVE 112 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~-l~g--~~i~V~ 112 (201)
...+|||+.|...-.|+|+..+|..||.|++|.++... .|.++|||||.|.+..+|++||..|||.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 45689999999999999999999999999999998876 78999999999999999999999999975 444 578999
Q ss_pred ecccCCCC
Q 028972 113 KAKRSRGR 120 (201)
Q Consensus 113 ~a~~~~~~ 120 (201)
+|...+++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99877654
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.07 E-value=2.4e-10 Score=91.04 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=78.1
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.......+||+||...+|.++|+.+|+.||.|..|.|+.++.+++++|||||+|.+.+.++.||+ ||+..|.+..|+|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44566789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87766
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.04 E-value=9.2e-10 Score=90.23 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE--------EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--------CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
+..++.|||.|||.++|.+++.++|.++|-|.. |+|..+. .|+.+|=|+|.|-..+.+..||+.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445667999999999999999999999997743 6777776 5999999999999999999999999999999
Q ss_pred CeeeEEeecccCC
Q 028972 106 GRLITVEKAKRSR 118 (201)
Q Consensus 106 g~~i~V~~a~~~~ 118 (201)
|+.|.|+.|+-+.
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999987553
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1.1e-10 Score=90.27 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=71.6
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+++...+|||+||...++|+.|.++|-+.|+|..|.|..++ .++.+ ||||+|+++..+.-|++.|||..|.+..|.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34456789999999999999999999999999999999887 55666 99999999999999999999999999988887
Q ss_pred ec
Q 028972 113 KA 114 (201)
Q Consensus 113 ~a 114 (201)
+-
T Consensus 83 ~r 84 (267)
T KOG4454|consen 83 LR 84 (267)
T ss_pred cc
Confidence 64
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=78.87 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=68.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeC-CCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeeeEE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTD-PRTRESCGFAFVTMETVEGADRCIKYLNRSVLE---GRLITV 111 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~---g~~i~V 111 (201)
.-.+|||.+||.++...+|..+|..|-..+.+.|... +.....+-+|||+|.+..+|++|+..|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3569999999999999999999999866666655432 222334469999999999999999999999985 788999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
++|+...
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9998654
No 83
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=3.9e-09 Score=83.40 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=81.0
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 24 SRSRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 24 ~~~~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
+|....--+.......||.+-|..+++.+.|-..|.+|-......++.++.|++++||+||.|.+.+++..|+..|+|..
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 44444444555667899999999999999999999999888888999999999999999999999999999999999999
Q ss_pred eCCeeeEEeeccc
Q 028972 104 LEGRLITVEKAKR 116 (201)
Q Consensus 104 l~g~~i~V~~a~~ 116 (201)
++..+|++.....
T Consensus 257 VgsrpiklRkS~w 269 (290)
T KOG0226|consen 257 VGSRPIKLRKSEW 269 (290)
T ss_pred cccchhHhhhhhH
Confidence 9999998765443
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.85 E-value=1.1e-08 Score=87.35 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=68.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+......|-+.+|||++|++||.+||+.++ |+.+.+.. .+|++.|-|||||++++++++||+ .+...+..+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344566788899999999999999999984 77766665 479999999999999999999999 78888888889887
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
.+...
T Consensus 82 ~~~~~ 86 (510)
T KOG4211|consen 82 TAGGA 86 (510)
T ss_pred ccCCc
Confidence 66443
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.85 E-value=3.1e-09 Score=87.66 Aligned_cols=84 Identities=25% Similarity=0.321 Sum_probs=76.3
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCee--------EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVT--------ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
....+|||-+||..+++++|.++|.++|.|. .|+|.+++.|+.+++-|.|.|++...|++||..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4456899999999999999999999999874 36788888999999999999999999999999999999999
Q ss_pred eeeEEeecccCC
Q 028972 107 RLITVEKAKRSR 118 (201)
Q Consensus 107 ~~i~V~~a~~~~ 118 (201)
..|+|.+|..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999887654
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.5e-09 Score=92.47 Aligned_cols=72 Identities=31% Similarity=0.465 Sum_probs=64.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
..+..+|+|.|||..|++++|..+|+.||+|..|..-.. ..|.+||+|-+.-+|+.|++.|++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345668999999999999999999999999999765443 458999999999999999999999999999887
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.84 E-value=7e-09 Score=91.92 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPR---TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
++..+.|||+||++.++++.|...|..||+|..|+|++... .....-|+||.|.+..+|++|++.|+|..+.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45677899999999999999999999999999999887542 133456999999999999999999999999999999
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
+.|++.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=5.7e-09 Score=90.67 Aligned_cols=90 Identities=27% Similarity=0.375 Sum_probs=82.4
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+......+.|||++||..+++.++.+++..||.+..+.++.+..+|.++||||.+|.++.....|+..|||..++++.
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 34455667789999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred eEEeecccCC
Q 028972 109 ITVEKAKRSR 118 (201)
Q Consensus 109 i~V~~a~~~~ 118 (201)
|.|+.|....
T Consensus 361 lvvq~A~~g~ 370 (500)
T KOG0120|consen 361 LVVQRAIVGA 370 (500)
T ss_pred eEeehhhccc
Confidence 9999887654
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=4.1e-08 Score=76.89 Aligned_cols=71 Identities=35% Similarity=0.454 Sum_probs=63.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
+....+.|+|.+|+..+.+++|.++|..+|++....+. .+++||+|++.++|..||..|++..|.++.|++
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 45567789999999999999999999999999555442 259999999999999999999999999999999
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.68 E-value=5.1e-08 Score=68.59 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=45.4
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC-----eeCCeeeEE
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS-----VLEGRLITV 111 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-----~l~g~~i~V 111 (201)
++.|+|.+++..++.++|+++|.+||.|..|.+.... ..|||-|.+++.|+.||+.+... .|.+..+++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4679999999999999999999999999999987653 38999999999999999877443 466666666
Q ss_pred ee
Q 028972 112 EK 113 (201)
Q Consensus 112 ~~ 113 (201)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 91
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=1.3e-06 Score=66.35 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
-..|........|.|.+||...+|++|+++..+.|.|+...+..+ |++.|+|...++++-||.+|+...+..
T Consensus 106 ~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 106 RRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 334556667789999999999999999999999999999888776 599999999999999999998887643
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.60 E-value=1.9e-07 Score=79.94 Aligned_cols=85 Identities=26% Similarity=0.381 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
+..|........|-+.+||+.+|++||.+||+..-.|.. |.++.++ .+.+.|-|||.|++.+.|++||. -|...|+.
T Consensus 94 ~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGh 171 (510)
T KOG4211|consen 94 PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGH 171 (510)
T ss_pred CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhcc
Confidence 334444456678999999999999999999999865555 4455555 67799999999999999999998 56677888
Q ss_pred eeeEEeec
Q 028972 107 RLITVEKA 114 (201)
Q Consensus 107 ~~i~V~~a 114 (201)
+-|.|-.+
T Consensus 172 RYIEvF~S 179 (510)
T KOG4211|consen 172 RYIEVFRS 179 (510)
T ss_pred ceEEeehh
Confidence 88888654
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.55 E-value=6.5e-07 Score=75.25 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCeEEEeCCC-CCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 37 GNNLYVTGLS-TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 37 ~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+..|.|.||. ..+|.+.|.-+|..||+|..|+|+.++. --|+|.|.+...|+.|++.|+|+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5778888887 5689999999999999999999998753 479999999999999999999999999999999987
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 654
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=3.9e-07 Score=71.10 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=68.0
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeeeEEe
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITVE 112 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~-g~~i~V~ 112 (201)
.++..+||+.|||.+++.+.|..+|++|.....|.++... .+.|||+|.+...|..|...|++..|- ...|.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5678899999999999999999999999989999887643 269999999999999999999999886 7888888
Q ss_pred ecc
Q 028972 113 KAK 115 (201)
Q Consensus 113 ~a~ 115 (201)
+|+
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.51 E-value=4.8e-07 Score=60.07 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=47.9
Q ss_pred CeEEEeCCCCCCcHHH----HHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 38 NNLYVTGLSTRVTNAD----LEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
..|+|.|||.+.+... |+.++..+| .|..|. .+.|+|.|.+++.|..|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999888654 566777775 665551 1589999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 986544
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.47 E-value=1.1e-07 Score=82.22 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
...+||+-.|...+++.+|.+||+.+|+|..|.|+.+..++.++|.|||+|.+.+.+..||. |.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 34578888999999999999999999999999999999999999999999999999999997 99999999999998765
Q ss_pred cCCC
Q 028972 116 RSRG 119 (201)
Q Consensus 116 ~~~~ 119 (201)
..+.
T Consensus 257 aekn 260 (549)
T KOG0147|consen 257 AEKN 260 (549)
T ss_pred HHHH
Confidence 5443
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.45 E-value=1.4e-07 Score=77.77 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=67.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCC--CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
..+||+||-|++|++||.+.+...| .|.+++++.+..+|+++|||+|...+...+++.|+.|..++|.|+.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3689999999999999999998876 67788888888899999999999999999999999999999999865554
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.41 E-value=2.6e-07 Score=71.97 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=54.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
...+.+|||.||..+++|++|+.+|..|-...-++|... .| -..|||+|++.+.|..||..|+|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 445678999999999999999999999976655555322 22 24899999999999999999999876
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.41 E-value=2.1e-06 Score=71.56 Aligned_cols=86 Identities=26% Similarity=0.335 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 28 SRSPDAANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
...|....+++.+.|-+|.. .++.+-|..+|..||.|+.|++++.+. |.|+|++.+..+++.||..||+..|-|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 44456667889999999984 567788999999999999999998764 799999999999999999999999999
Q ss_pred eeeEEeecccCC
Q 028972 107 RLITVEKAKRSR 118 (201)
Q Consensus 107 ~~i~V~~a~~~~ 118 (201)
..|.|++++...
T Consensus 353 ~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 353 GKLNVCVSKQNF 364 (494)
T ss_pred ceEEEeeccccc
Confidence 999999987654
No 100
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.35 E-value=5.4e-07 Score=74.19 Aligned_cols=82 Identities=24% Similarity=0.450 Sum_probs=73.7
Q ss_pred CCCeEE-EeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 36 PGNNLY-VTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 36 ~~~~l~-V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
+..++| |++|+..+++++|..+|..+|.|..+.+.....++...|||||.|.+...++.|+.. +...+.+..|.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999986 778899999999887
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
....
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 7664
No 101
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.30 E-value=4.9e-06 Score=57.79 Aligned_cols=78 Identities=14% Similarity=0.296 Sum_probs=51.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEE-EeeCC------CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECH-LVTDP------RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR- 107 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-i~~~~------~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~- 107 (201)
..+.|.|.+.|... ...|.+.|++||+|.+.. +.... .......+..|.|+++.+|++||. .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45579999999984 456777899999997764 00000 001122499999999999999999 899999886
Q ss_pred eeEEeecc
Q 028972 108 LITVEKAK 115 (201)
Q Consensus 108 ~i~V~~a~ 115 (201)
.|-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577664
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.30 E-value=1.7e-06 Score=71.22 Aligned_cols=82 Identities=26% Similarity=0.538 Sum_probs=63.3
Q ss_pred CCCeEEEeCCCCCCcHHH----H--HHHHcCCCCeeEEEEeeCCCC-CCcccE--EEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 36 PGNNLYVTGLSTRVTNAD----L--EKFFGGEGKVTECHLVTDPRT-RESCGF--AFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~----L--~~~F~~~G~i~~v~i~~~~~~-~~~~g~--afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
...-+||-+||+.+..++ | .++|.+||.|..|.|.+.... ....+. .||+|.+.++|..||.+++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 445689999998876554 3 589999999999887654311 111122 4999999999999999999999999
Q ss_pred eeeEEeecccC
Q 028972 107 RLITVEKAKRS 117 (201)
Q Consensus 107 ~~i~V~~a~~~ 117 (201)
+.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999886543
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.26 E-value=5.5e-07 Score=71.41 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=60.9
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCC--------CCcc----cEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT--------RESC----GFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~--------~~~~----g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
.-.|||++||+.+....|.++|.+||+|-.|.+.....+ +.+. --|+|+|.+...|+.+...||++.|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988765543 2222 2378999999999999999999999
Q ss_pred CCee
Q 028972 105 EGRL 108 (201)
Q Consensus 105 ~g~~ 108 (201)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8864
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=2.6e-06 Score=74.24 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=62.7
Q ss_pred CCCeEEEeCCCCCCc------HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-Cee
Q 028972 36 PGNNLYVTGLSTRVT------NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRL 108 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~-g~~ 108 (201)
-...|+|.|+|.--. ...|..+|+++|+|.++.++.+..+| .+||+|++|++..+|+.|++.|||+.|+ ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345789999986432 24577889999999999999887555 9999999999999999999999999885 455
Q ss_pred eEEee
Q 028972 109 ITVEK 113 (201)
Q Consensus 109 i~V~~ 113 (201)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55543
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.24 E-value=3.3e-06 Score=51.87 Aligned_cols=52 Identities=10% Similarity=0.310 Sum_probs=42.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
+.|-|.+++....+.. ..+|..||+|..+.+.... .+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 5688999998776554 4588899999998887322 39999999999999985
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.21 E-value=5.3e-06 Score=73.97 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCC-eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 36 PGN-NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 36 ~~~-~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
+++ .|-+.|+|++++-+||.+||..|-.+-.-.++.-.+.|.+.|-|.|.|++.++|..|...|++..|..+.|.|.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 455 678899999999999999999997665444445556899999999999999999999999999999999888754
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.18 E-value=4.8e-06 Score=70.14 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=66.5
Q ss_pred CCCCCC-CCCCeEEEeCCCCCCcHHHHHHHHcCCCCe-eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 29 RSPDAA-NPGNNLYVTGLSTRVTNADLEKFFGGEGKV-TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 29 ~~p~~~-~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
.++.+. +|+.+|++.|||..++|++|+.+|..-|.+ +..++.. +.+.+|++.+++.|+|..|+-.||.+.+++
T Consensus 405 KN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-----kd~kmal~q~~sveeA~~ali~~hnh~lge 479 (492)
T KOG1190|consen 405 KNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-----KDRKMALPQLESVEEAIQALIDLHNHYLGE 479 (492)
T ss_pred ccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC-----CCcceeecccCChhHhhhhccccccccCCC
Confidence 334444 677899999999999999999999998755 4443322 223499999999999999999999999876
Q ss_pred e-eeEEeeccc
Q 028972 107 R-LITVEKAKR 116 (201)
Q Consensus 107 ~-~i~V~~a~~ 116 (201)
. .|.|.|++.
T Consensus 480 n~hlRvSFSks 490 (492)
T KOG1190|consen 480 NHHLRVSFSKS 490 (492)
T ss_pred CceEEEEeecc
Confidence 5 889999865
No 108
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.08 E-value=3.3e-06 Score=74.03 Aligned_cols=84 Identities=21% Similarity=0.297 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHc-CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee-
Q 028972 27 RSRSPDAANPGNNLYVTGLSTRVTNADLEKFFG-GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL- 104 (201)
Q Consensus 27 ~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l- 104 (201)
+-.+|....+.+.|||.||-.-+|..+|++++. ..|.|..++|-.. +..|||.|.+.++|.+.+..|||..|
T Consensus 434 RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 434 RVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred cCCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccC
Confidence 445566677889999999999999999999999 4567777655333 35899999999999999999999987
Q ss_pred --CCeeeEEeeccc
Q 028972 105 --EGRLITVEKAKR 116 (201)
Q Consensus 105 --~g~~i~V~~a~~ 116 (201)
+.+.|.|.|+..
T Consensus 508 ~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 508 PSNPKHLIADFVRA 521 (718)
T ss_pred CCCCceeEeeecch
Confidence 668888888753
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.07 E-value=5.3e-06 Score=69.40 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=65.8
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCC-eeE--EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGK-VTE--CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
...|-+.+||+.++.++|.+||..|.. |.. |.|+.+. .|.+.|-|||+|.+.+.|.+|....+.+..+.+.|+|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457899999999999999999999863 333 7777764 789999999999999999999999999988888888865
Q ss_pred c
Q 028972 114 A 114 (201)
Q Consensus 114 a 114 (201)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 4
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.05 E-value=3.1e-05 Score=64.75 Aligned_cols=83 Identities=27% Similarity=0.268 Sum_probs=67.3
Q ss_pred CCCCCCCCeEEEeCCC--CCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--
Q 028972 31 PDAANPGNNLYVTGLS--TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG-- 106 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp--~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g-- 106 (201)
++...++..|.+.=|. +.+|.+.|..+....|+|..|.|++. ++ --|.|||++.+.|++|.+.|||..|.-
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccc
Confidence 5566667676666554 56889999999999999999988765 33 369999999999999999999998743
Q ss_pred eeeEEeecccCC
Q 028972 107 RLITVEKAKRSR 118 (201)
Q Consensus 107 ~~i~V~~a~~~~ 118 (201)
-.|+|+||++.+
T Consensus 189 CTLKIeyAkP~r 200 (494)
T KOG1456|consen 189 CTLKIEYAKPTR 200 (494)
T ss_pred eeEEEEecCcce
Confidence 478999998764
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=1.8e-05 Score=69.19 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCCeeEEEEeeCC---CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 52 ADLEKFFGGEGKVTECHLVTDP---RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
++|+..+.+||.|..|.|+... ...-..|..||+|.+.++|+.|++.|+|.+|.++.|.+.|....
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3455667899999999988762 22444678999999999999999999999999999988886543
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.01 E-value=8.4e-06 Score=69.04 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=58.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeC---CCC--CC--------cccEEEEEEcCHHHHHHHHHH
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTD---PRT--RE--------SCGFAFVTMETVEGADRCIKY 98 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---~~~--~~--------~~g~afV~f~~~~~a~~al~~ 98 (201)
+++.+..+|.+.|||.+-.-+.|.++|..+|.|..|.|+.. +.. +. .+-+|||+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 45568999999999999888999999999999999998765 221 11 245899999999999999997
Q ss_pred hCCC
Q 028972 99 LNRS 102 (201)
Q Consensus 99 l~g~ 102 (201)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7554
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.8e-05 Score=68.46 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHc-CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFG-GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
...++..|||||+||.-++.++|..||+ -||.|+.+-|-.|+.-+.++|-|=|+|.+...-.+||.
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3467888999999999999999999999 79999999999998889999999999999999999987
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.00 E-value=2.5e-05 Score=64.61 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCCCeEEEeCCCC----CCc-------HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 35 NPGNNLYVTGLST----RVT-------NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 35 ~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
....+|.|.||-. ..+ +++|.+-..+||.|..|.|.-. .+.|.+.|.|.+.++|..||+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3456788888732 222 3566777899999999987633 356899999999999999999999999
Q ss_pred eCCeeeEEeeccc
Q 028972 104 LEGRLITVEKAKR 116 (201)
Q Consensus 104 l~g~~i~V~~a~~ 116 (201)
|+|+.|.......
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999998876543
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.95 E-value=6.5e-05 Score=55.36 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=52.7
Q ss_pred CCCCeEEEeCCC------CCCcH---HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 35 NPGNNLYVTGLS------TRVTN---ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 35 ~~~~~l~V~nLp------~~~t~---~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
+|..+|.|.-+. ....+ .+|.+.|..||+|.-|.++.+ .-+|+|.+-+.|.+|+. |+|.+|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 445566665444 11222 367888999999998888754 68999999999999999 9999999
Q ss_pred CeeeEEeecccC
Q 028972 106 GRLITVEKAKRS 117 (201)
Q Consensus 106 g~~i~V~~a~~~ 117 (201)
|+.|+|....+.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999886554
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=5.7e-05 Score=65.46 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=50.8
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCC---CCCCccc---EEEEEEcCHHHHHHHHHHhC
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDP---RTRESCG---FAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~---~~~~~~g---~afV~f~~~~~a~~al~~l~ 100 (201)
...-..+|||++||++++|++|...|..||.+. |.++... ..-.++| |+|+.|+++..+++.|..+.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 344577999999999999999999999999764 4444211 1123456 99999999999888877553
No 117
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.85 E-value=5.1e-05 Score=61.55 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcc-cEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESC-GFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~-g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
++++++.+++||+|..|.|...+..-... --.||+|+..+.|.+|+-.|||..|+|+.+..+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45678889999999999887765332222 247999999999999999999999999999887754
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.81 E-value=2.2e-05 Score=71.80 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eeeE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG--RLIT 110 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g--~~i~ 110 (201)
...+.+.++|++|..++....|..+|..||.|..|.+-... -||+|.|++...|++|+..|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 34567789999999999999999999999999998875433 399999999999999999999999976 5789
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.+|....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99987653
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.80 E-value=9.1e-06 Score=64.63 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=52.5
Q ss_pred HHHHHHHc-CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCC
Q 028972 52 ADLEKFFG-GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 52 ~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~ 118 (201)
++|...|+ +||+|+++.|..+- .-...|-+||.|...++|++|++.||+..|.|++|..++..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 44555555 89999988665432 34556889999999999999999999999999999988865443
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.65 E-value=7.1e-05 Score=62.90 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=58.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT---RESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.|.|.||.+.+|.+++..+|..+|+|.++.|+..... ....-.|||.|.+...+..|-. |-+++|-+..|.|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 8999999999999999999999999999887653222 2234589999999998888866 77777666665554
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=3.1e-05 Score=70.52 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
...|||.|+|+..|.++|+.+|.++|.++.+.++..+ .|+++|.|||.|.++.+|..++..++...+.-..+.|+...+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4579999999999999999999999999999877766 799999999999999999999998888888888888877555
Q ss_pred C
Q 028972 117 S 117 (201)
Q Consensus 117 ~ 117 (201)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.61 E-value=6.2e-05 Score=67.40 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 26 SRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 26 ~~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
.-...|-+...+..|||..||..+++.++.++|.+.-.|++ |.|...+ +++..+.|||+|..++++..|+..-+.+.+
T Consensus 423 ~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~ 501 (944)
T KOG4307|consen 423 PGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYP 501 (944)
T ss_pred CCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhccccccc
Confidence 33445566677889999999999999999999999888877 5554443 778889999999998888888876677777
Q ss_pred CCeeeEEee
Q 028972 105 EGRLITVEK 113 (201)
Q Consensus 105 ~g~~i~V~~ 113 (201)
+...|.|.-
T Consensus 502 G~r~irv~s 510 (944)
T KOG4307|consen 502 GHRIIRVDS 510 (944)
T ss_pred CceEEEeec
Confidence 888888864
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.59 E-value=0.00043 Score=43.64 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=45.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCC---CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGE---GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
..+|+|.||. +++.++|+.+|..| .....|.++-+. -|-|.|.+.+.|..||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999995 57888999999998 235678888774 6889999999999999764
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00014 Score=61.08 Aligned_cols=70 Identities=29% Similarity=0.400 Sum_probs=53.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCC----CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGE----GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.|-+.+||+++++.++.+||..- |.++.|.++..+ +|+..|-|||.|..+++|+.||. -|...|+.+-|+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIE 236 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIE 236 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHH
Confidence 45668999999999999999743 234556665543 78999999999999999999997 344445544443
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.45 E-value=0.00087 Score=44.63 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=41.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 101 (201)
.+.+||+ +|.+.-..||.++|..||.|. |.++.+. -|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3445555 999999999999999999884 4444442 899999999999999987753
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.41 E-value=0.00015 Score=61.67 Aligned_cols=75 Identities=32% Similarity=0.508 Sum_probs=58.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCeeeEEeeccc
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV-LEGRLITVEKAKR 116 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~-l~g~~i~V~~a~~ 116 (201)
.+|||+||.+.++..+|+.+|...-.-..-.|+.. .|||||.+.+..-|.+|++.++|+. +.|+.+.|.+.-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46999999999999999999976521111122222 1699999999999999999999985 8999999988765
Q ss_pred CC
Q 028972 117 SR 118 (201)
Q Consensus 117 ~~ 118 (201)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 54
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=4.7e-06 Score=75.69 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=62.8
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
..++||.||+..+.+.+|...|..+|.|..+.+......+..+|+|||+|..++.+.+||...+.+.++...|.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 457899999999999999999999998888877766778999999999999999999999866665554333333
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.25 E-value=0.0005 Score=52.81 Aligned_cols=84 Identities=11% Similarity=0.032 Sum_probs=51.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcC-CCCe---eEEEEeeCC--CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGG-EGKV---TECHLVTDP--RTRESCGFAFVTMETVEGADRCIKYLNRSVLEG- 106 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i---~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g- 106 (201)
.....+|.|.+||+.+|++++.+.+.. ++.. ..+...... .......-|||.|.+.+++...+..++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999887776 6655 333311221 112223469999999999999999999988743
Q ss_pred ----eeeEEeecccC
Q 028972 107 ----RLITVEKAKRS 117 (201)
Q Consensus 107 ----~~i~V~~a~~~ 117 (201)
....|++|.-+
T Consensus 84 kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQ 98 (176)
T ss_dssp TS-EEEEEEEE-SS-
T ss_pred CCCCcceeEEEcchh
Confidence 24567777654
No 129
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.20 E-value=0.00029 Score=60.63 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCCCCeEEEeCCCCCCc-HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 25 RSRSRSPDAANPGNNLYVTGLSTRVT-NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 25 ~~~~~~p~~~~~~~~l~V~nLp~~~t-~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
+..-..+......+.|-+.-+|..+. -++|...|.+||+|..|.+-... -.|.|+|.+..+|-.|.. .++..
T Consensus 360 rG~gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~av 432 (526)
T KOG2135|consen 360 RGRGVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAV 432 (526)
T ss_pred cCCCCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccce
Confidence 33345556666667777777777664 68899999999999999886542 279999999999988877 89999
Q ss_pred eCCeeeEEeeccc
Q 028972 104 LEGRLITVEKAKR 116 (201)
Q Consensus 104 l~g~~i~V~~a~~ 116 (201)
|+++.|+|-|-.+
T Consensus 433 lnnr~iKl~whnp 445 (526)
T KOG2135|consen 433 LNNRFIKLFWHNP 445 (526)
T ss_pred ecCceeEEEEecC
Confidence 9999999999776
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.0009 Score=58.67 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=46.4
Q ss_pred CCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC----CeeeEEeecccC
Q 028972 61 EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE----GRLITVEKAKRS 117 (201)
Q Consensus 61 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~----g~~i~V~~a~~~ 117 (201)
.|.-..+.++.|..+..+.|||||.|.+++++..+.+++||+.|. .+.+.|.||.-+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 455556777778778889999999999999999999999999753 456688887654
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.04 E-value=0.00018 Score=66.15 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=65.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+.+||++||+..+++.+|...|..+|.|..|.|...+ -+.-..||||.|.+...+..|+..+.+..|....+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 456789999999999999999999999999999987664 2334459999999999999999989988876555555554
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.0039 Score=51.05 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee-eEEeec
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL-ITVEKA 114 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~-i~V~~a 114 (201)
....|.|.++|+... ..|..+|++||+|+......+ | .|-+|.|.+..+|++||. .||+.|+|.. |-|...
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 366788889987644 456678999999987665522 2 399999999999999999 8999998864 445543
Q ss_pred c
Q 028972 115 K 115 (201)
Q Consensus 115 ~ 115 (201)
.
T Consensus 268 t 268 (350)
T KOG4285|consen 268 T 268 (350)
T ss_pred C
Confidence 3
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.01 E-value=0.00027 Score=58.42 Aligned_cols=80 Identities=30% Similarity=0.494 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCCCcHH-HHH--HHHcCCCCeeEEEEeeCCC----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 37 GNNLYVTGLSTRVTNA-DLE--KFFGGEGKVTECHLVTDPR----TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~-~L~--~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
...+||-+|+..+..+ .|+ +.|.+||.|..|.+..+.. .+.. .-++|+|+..++|..||...+|..++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3567888998776544 443 6789999999998877551 1222 238999999999999999999999999988
Q ss_pred EEeecccC
Q 028972 110 TVEKAKRS 117 (201)
Q Consensus 110 ~V~~a~~~ 117 (201)
++.+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 87776554
No 134
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.97 E-value=0.001 Score=53.21 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=60.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe----eCCeeeEEee
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV----LEGRLITVEK 113 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~----l~g~~i~V~~ 113 (201)
..|||.||..-+..+.|...|..||+|....++.|. .++..+-++|+|...-.|.+|+..+.-.- ..+.++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999876666654 67888899999999999999998763332 3445555544
Q ss_pred cc
Q 028972 114 AK 115 (201)
Q Consensus 114 a~ 115 (201)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 33
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.88 E-value=0.015 Score=41.18 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=50.4
Q ss_pred CCCCCCeEEE-eCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 33 AANPGNNLYV-TGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 33 ~~~~~~~l~V-~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
.......|.| ..+|..++.++|..+.+.+- .|..+.|+.+. ..++=.++|.|.+.+.|.+..+.+||+.|+.
T Consensus 8 ~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 8 PDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3334444544 45555556667766666654 56778888753 2345578999999999999999999998754
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.81 E-value=0.0047 Score=47.71 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=46.4
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeeeEEeecccC
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN--RSVLEGRLITVEKAKRS 117 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~--g~~l~g~~i~V~~a~~~ 117 (201)
..+.|+++|..|+.+..+.++... +-..|.|.+.+.|..|...|+ +..|.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999998888776543 478999999999999999999 99999999999998544
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.80 E-value=0.0094 Score=38.98 Aligned_cols=67 Identities=24% Similarity=0.464 Sum_probs=39.7
Q ss_pred eEEEe-CCCCCCcHHHHHHHHcCCC-----CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 39 NLYVT-GLSTRVTNADLEKFFGGEG-----KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 39 ~l~V~-nLp~~~t~~~L~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+|||. +--..++..+|..+|...+ .|-.|.|... |+||+... +.|+.+|..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 2335678888988888764 4456776543 99998864 58899999999999999999998
Q ss_pred ec
Q 028972 113 KA 114 (201)
Q Consensus 113 ~a 114 (201)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 138
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.73 E-value=0.0024 Score=56.15 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=54.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcC--CCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCeeeEE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGG--EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS--VLEGRLITV 111 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~--~l~g~~i~V 111 (201)
.-+.|+|.-||..+..++|+.+|.. +-.+..|.+..+. -=||+|++.+||+.|.+.|... +|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3457888999999999999999975 6688888887653 3599999999999999877443 477776643
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.69 E-value=0.00026 Score=59.61 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=53.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
.+|+|.+|+..+...++.++|..+|+|.+..+... ...-+|.|+|........|+. ++|.++.-+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k~qh 217 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERKRQH 217 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhhhhh
Confidence 46899999999999999999999999988766532 233478899999999999998 7888776443
No 140
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.53 E-value=0.015 Score=42.68 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=53.6
Q ss_pred CCCCCeEEEeCCCCCCc----HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 34 ANPGNNLYVTGLSTRVT----NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
++|-.+|.|.=|..++. ...|...++.||+|..|.+.-. .-|.|.|++...|=.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 45566788876665554 2345566789999999876532 3799999999999999998876 3567777
Q ss_pred EEeecc
Q 028972 110 TVEKAK 115 (201)
Q Consensus 110 ~V~~a~ 115 (201)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777643
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.38 E-value=0.0024 Score=57.14 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+.+.++..+|||+||...+..+-++.++..+|.|..+..+. |+|.+|..+..+..|+..|+-..++|+.+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34566778999999999999999999999999887765543 999999999999999998988888888776
Q ss_pred Eee
Q 028972 111 VEK 113 (201)
Q Consensus 111 V~~ 113 (201)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 554
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.22 E-value=0.021 Score=49.25 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
.++.++..|+|-.+|..++-.||..|+..+- .|..|.|+.+.. -++=.++|.|.+.++|....+.+||..|+.
T Consensus 69 ~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 69 KNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred ccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3444588999999999999999999988764 788999988532 222358999999999999999999998764
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.13 E-value=0.0036 Score=51.71 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..+++||+++...+.+.++..+|..+|.+..+.+.........+++++|.|+..+.+..||+....+.+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999899999999988777766666678889999999999999999999444446666555544443
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.01 E-value=0.0062 Score=56.07 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=59.9
Q ss_pred EeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee--CCeeeEEeecccCCC
Q 028972 42 VTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL--EGRLITVEKAKRSRG 119 (201)
Q Consensus 42 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l--~g~~i~V~~a~~~~~ 119 (201)
+.|.+-..+-..|..+|.+||.|..++.+.+-. .|.|+|...+.|..|++.|+|+++ .|.+.+|.+|+.-.-
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 334444566677899999999999999887653 899999999999999999999974 688899999986653
Q ss_pred C
Q 028972 120 R 120 (201)
Q Consensus 120 ~ 120 (201)
.
T Consensus 377 ~ 377 (1007)
T KOG4574|consen 377 Y 377 (1007)
T ss_pred c
Confidence 3
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.67 E-value=0.11 Score=33.18 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 48 RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 48 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
.++-++|+..|.+|+-. .|..++ + --||.|.+.++|+.|....+++.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56779999999999732 334444 2 2489999999999999999999988887765
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.65 E-value=0.001 Score=56.70 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=65.1
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
..++.|.|||+...|+.|..++.+||.|..|..+.. ..-....-|+|...+.+..||.+|+|..|....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 446889999999999999999999999998865322 11223445788899999999999999999999999988765
Q ss_pred CCCC
Q 028972 117 SRGR 120 (201)
Q Consensus 117 ~~~~ 120 (201)
....
T Consensus 157 eq~~ 160 (584)
T KOG2193|consen 157 EQNA 160 (584)
T ss_pred hhhh
Confidence 5433
No 147
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.64 E-value=1.3 Score=40.89 Aligned_cols=70 Identities=9% Similarity=0.154 Sum_probs=50.3
Q ss_pred eEEEe-CCCCCCcHHHHHHHHcCCCCe-----eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 39 NLYVT-GLSTRVTNADLEKFFGGEGKV-----TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 39 ~l~V~-nLp~~~t~~~L~~~F~~~G~i-----~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.+||. +--..++..+|..++..-+.| -.|.|..+ |.||+.. .+.|...+..|++..+.|+.|.|+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 45542 233567888888777765544 44555532 8999985 566888999999999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
.+...
T Consensus 559 ~~~~~ 563 (629)
T PRK11634 559 LLGDA 563 (629)
T ss_pred ECCCC
Confidence 88543
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.59 Score=41.86 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCCCCCeEEEeCCCCC-CcHHHHHHHHcCC----CCeeEEEEeeCC----------CCCC--------------------
Q 028972 33 AANPGNNLYVTGLSTR-VTNADLEKFFGGE----GKVTECHLVTDP----------RTRE-------------------- 77 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~~~----------~~~~-------------------- 77 (201)
...++..|-|.||.|+ +...+|..+|..| |.|..|.|.... .+|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3567788999999976 5678999998876 588888764321 1111
Q ss_pred -----------------cccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 78 -----------------SCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 78 -----------------~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
-.=||.|+|.+.+.|.++.+.++|.+|....+.+.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 01279999999999999999999999865444433
No 149
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=92.69 E-value=0.19 Score=32.23 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=47.3
Q ss_pred HHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 52 ADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 52 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
.+|++.|.+.| ++..|..+....+..+.-.-||+.....+... .|+=+.|+++.|.|+-....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888888 78888888877777777788998876655444 35566788999988865543
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.38 E-value=0.49 Score=38.81 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=43.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCe-eEEEEeeCCCCCCcccEEEEEEcCH-------HHHHHHHHHhC
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKV-TECHLVTDPRTRESCGFAFVTMETV-------EGADRCIKYLN 100 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~-------~~a~~al~~l~ 100 (201)
.+...+-|+|+||+.++...||+..+.+.+.+ ..+.+.- +.|-||+.|.+. .++.+++..+|
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 34445669999999999999999999988744 4444432 346899999764 44555554443
No 151
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.4 Score=41.07 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCe-eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKV-TECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.-.+.|-|-++|...-.+||...|+.|+.- ..|.|+.+. .||..|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 346688899999998889999999999743 566666654 89999999999999998
No 152
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=92.36 E-value=0.28 Score=31.52 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 52 ADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 52 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
++|.+.|...| +|..|.-+....++.+.-..||+++...+...+ ++=+.|.+..|+|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777788777 788887777776777778889998876554444 4556688999998876554
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.23 E-value=0.18 Score=38.52 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCeEEEeCCCCCCcH-----HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-eeE
Q 028972 37 GNNLYVTGLSTRVTN-----ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR-LIT 110 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~-----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~-~i~ 110 (201)
.+.+++.+|+..+-. ...+.+|.+|-+...+.++.. .++.-|.|.+++.|..|..+++...|.|+ .|+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 446778888765432 234556666666555555443 24778899999999999999999999988 777
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
.-+|...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777654
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=90.96 E-value=0.52 Score=33.64 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=30.9
Q ss_pred eEEEeCCCCCC---------cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC-HHHHHHHHH
Q 028972 39 NLYVTGLSTRV---------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET-VEGADRCIK 97 (201)
Q Consensus 39 ~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~al~ 97 (201)
++.|-|++... +.++|.+.|..|..+. +..+..+ .-+.|+++|+|.. ..-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 57778886543 4578999999998775 4444443 2467899999974 555555554
No 155
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.33 E-value=7.7 Score=30.61 Aligned_cols=58 Identities=16% Similarity=0.049 Sum_probs=33.1
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH--HhCCCeeCCe
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK--YLNRSVLEGR 107 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~--~l~g~~l~g~ 107 (201)
+.--|.+-+...|.|---.-...++..-..=+-|-.=.++++|.+||. .|+|.+|-=+
T Consensus 29 ~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 29 DLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred HHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 344556666777766332211111121122255666678999999995 6899988433
No 156
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=86.31 E-value=0.1 Score=46.31 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=55.2
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
...+.|||.||+++++-++|+.++..+-.+..+.+-.........-+++|+|+---....|+.+||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 44668999999999999999999999876666655433323334457899998877788888888887665443
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=84.70 E-value=1.2 Score=34.92 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.......+++.+++..++..++..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 44566789999999999999999999999999777776655434344444444444444444443
No 158
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=84.60 E-value=1.2 Score=37.86 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCC-eeEEEEeeCCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGK-VTECHLVTDPRT--RESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
.-..|.|.+||+..++.+|.+.+..|-. |....+...... ..-.+.|||.|..++++......++|++|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3457889999999999998887777532 222223211101 12246799999999999999999999986
No 159
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=83.78 E-value=4.6 Score=27.04 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=41.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
..|+.-++..++..+|++.+++ || .|..|..+..+. ...=|||.+.....|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 4566678889999999999887 55 667776555432 2236999999888887776544
No 160
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.25 E-value=5.4 Score=26.23 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=41.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.-|+..++..++..+|+..+++ |+ .|..|..+..+. ...-|||.+..-+.|..+-..|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4677788999999999998887 55 666665554431 2236999998877777665433
No 161
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=82.97 E-value=4.6 Score=34.96 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCCCCCCCeEEEeCCCCC-CcHHHHHHHHcCC----CCeeEEEEeeCC----------CCC-------------------
Q 028972 31 PDAANPGNNLYVTGLSTR-VTNADLEKFFGGE----GKVTECHLVTDP----------RTR------------------- 76 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~~~----------~~~------------------- 76 (201)
|+...+...|-|-||.|+ +...+|..+|+.| |.|..|.|.... ..|
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 455677888999999975 5678888888776 567766653210 000
Q ss_pred -------Cc-----------------------------ccEEEEEEcCHHHHHHHHHHhCCCeeCC--eeeEEee
Q 028972 77 -------ES-----------------------------CGFAFVTMETVEGADRCIKYLNRSVLEG--RLITVEK 113 (201)
Q Consensus 77 -------~~-----------------------------~g~afV~f~~~~~a~~al~~l~g~~l~g--~~i~V~~ 113 (201)
.. .=||.|+|.+.+.++.....++|+++.. ..+-+.|
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 00 1279999999999999999999998754 3344443
No 162
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=81.75 E-value=3.5 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCCeeEEEEee
Q 028972 52 ADLEKFFGGEGKVTECHLVT 71 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~ 71 (201)
++|+++|+.+|+|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999998776644
No 163
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.74 E-value=0.22 Score=43.06 Aligned_cols=78 Identities=4% Similarity=-0.172 Sum_probs=58.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
...|+..||..+++.+|.-+|+.||.|..+.+...-..+...-.+||...+ ++|..||..+.-..+.|..+.|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 356778899999999999999999999888776655566666678887654 566777766666666777777777654
No 164
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=81.33 E-value=0.35 Score=38.24 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=57.0
Q ss_pred CCCeEEEeC----CCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 36 PGNNLYVTG----LSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 36 ~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
...+++.|+ |...++++.+..+|...|.|..+.+..+. .+.++.++|+++.-....-.++...++..+--+++
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 345667777 77778889999999999999999988876 47788899999988888888888777665443333
No 165
>PRK11901 hypothetical protein; Reviewed
Probab=79.95 E-value=6.7 Score=32.97 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=40.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEE--EEcCHHHHHHHHHHhCCCe
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFV--TMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~al~~l~g~~ 103 (201)
..++|-|..+ ..++.|..|..+++ +..+++......|+. .|.+| .|.+.++|+.||..|....
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3445555554 44778888888775 445555544434433 35444 6889999999999886654
No 166
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.32 E-value=6.3 Score=32.59 Aligned_cols=80 Identities=10% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCC-------CCCCcccEEEEEEcCHHHHHHHH----HHhCCC--
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDP-------RTRESCGFAFVTMETVEGADRCI----KYLNRS-- 102 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-------~~~~~~g~afV~f~~~~~a~~al----~~l~g~-- 102 (201)
.+..|.+.||..+++--.+...|.+||+|+.|.++.+. +..+......+.|-+.+.|.... +.|...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999888888999999999999998765 11223347889999888875543 333322
Q ss_pred eeCCeeeEEeecc
Q 028972 103 VLEGRLITVEKAK 115 (201)
Q Consensus 103 ~l~g~~i~V~~a~ 115 (201)
.|.-..|.|.++.
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3666677777655
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=75.63 E-value=3.8 Score=34.16 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCC
Q 028972 82 AFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 82 afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~ 118 (201)
|||+|++..+|+.|++.+.... ...+.|..|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999665543 3556777776554
No 168
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=74.88 E-value=2.4 Score=38.69 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=57.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
+||+.|.....+..-|..++..+++++...++.....+..++-|+++|.-+..++.|.. |.++.+....+++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 88988888888888899999999999888877777677777889999999888877755 6666666555544
No 169
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=73.61 E-value=18 Score=21.97 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=40.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCH----HHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETV----EGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~----~~a~~al~~ 98 (201)
+|.|.||.-..-...|+..+...-.|..+.+.... +.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57788887777788899999998888888876553 4788888743 666666664
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=72.54 E-value=34 Score=24.76 Aligned_cols=71 Identities=10% Similarity=0.196 Sum_probs=48.3
Q ss_pred CCeEEEeCCCCC---CcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 37 GNNLYVTGLSTR---VTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 37 ~~~l~V~nLp~~---~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...|.|...... .+...|.+.+.+-| .++.+.... +-..|.|.+.++..+|.+.|....=++..|.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 345777766333 45677888888877 444444332 278899999999999988887665455666666
Q ss_pred ecc
Q 028972 113 KAK 115 (201)
Q Consensus 113 ~a~ 115 (201)
.+.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 654
No 171
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=70.07 E-value=2.9 Score=33.48 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECH 68 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~ 68 (201)
+.+....||+-|||..+|++.|..+..++|-+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 344556899999999999999999999998665443
No 172
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=69.92 E-value=28 Score=29.42 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=3.4
Q ss_pred CcHHHHHH
Q 028972 49 VTNADLEK 56 (201)
Q Consensus 49 ~t~~~L~~ 56 (201)
+++.+|.+
T Consensus 213 ~~k~eid~ 220 (367)
T KOG0835|consen 213 TTKREIDE 220 (367)
T ss_pred CcHHHHHH
Confidence 44444433
No 173
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=66.21 E-value=9.6 Score=29.33 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=32.9
Q ss_pred CcHHHHHHHHcCC-CCeeEEEEeeCCCCC--CcccEEEEEEcCHHHHHHHHH
Q 028972 49 VTNADLEKFFGGE-GKVTECHLVTDPRTR--ESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 49 ~t~~~L~~~F~~~-G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~al~ 97 (201)
+|+++|.++.... |.+..|.+-... .+ ..+|-.||+|.+.+.|.++++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 4555555444322 688888775443 23 567889999999999999876
No 174
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.57 E-value=10 Score=31.30 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=27.1
Q ss_pred CCeEEEeCCCCC------------CcHHHHHHHHcCCCCeeEEEEee
Q 028972 37 GNNLYVTGLSTR------------VTNADLEKFFGGEGKVTECHLVT 71 (201)
Q Consensus 37 ~~~l~V~nLp~~------------~t~~~L~~~F~~~G~i~~v~i~~ 71 (201)
..+||+.+||.. .+++.|...|+.||.|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 347888888842 34677999999999999887753
No 175
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=62.68 E-value=37 Score=22.88 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 51 NADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 51 ~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.+.+.++++++| ++..+.+..... -.+..+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~y----D~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEY----DFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCC----CEEEEEEcCCHHHHHHHHHHHH
Confidence 356777888875 788887765442 2367888888888877665443
No 176
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=62.21 E-value=37 Score=30.46 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHc----CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
+..|.++.-..+.+..+|..+|. .+|-|+.+.|...+. .......++.|.+.++|..|+..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 33444443222233456777665 578888887766553 2334577889999999999988764
No 177
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=61.85 E-value=2.3 Score=35.86 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
...|.+++++.|.|..-.|.... +.|.+||.+-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 35677888888887665554433 4578899999999999999988765
No 178
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=61.56 E-value=39 Score=21.46 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=39.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHH
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIK 97 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~ 97 (201)
..|+|.++.-.--...+...+.....|..+.+.... +.++|.|++ .++...||+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~ 61 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIE 61 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHH
Confidence 457777777666677889999998888888887664 469999987 344455554
No 179
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=60.92 E-value=7.9 Score=34.64 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=33.1
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 80 GFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 80 g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
.|+++.|+++..+.+|+..++|..+.+..+.|..+...
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 49999999999999999999999988888877766543
No 180
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=59.71 E-value=28 Score=24.90 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHcC-CCC----eeEEEEeeCCCCCCcccEEEEEEcCHHHHHH
Q 028972 48 RVTNADLEKFFGG-EGK----VTECHLVTDPRTRESCGFAFVTMETVEGADR 94 (201)
Q Consensus 48 ~~t~~~L~~~F~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 94 (201)
+++.+||.+-+.+ |-. |.-+.+-....+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4667777766654 322 222234444556888899987 666666554
No 181
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.53 E-value=55 Score=24.83 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=38.9
Q ss_pred eCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 43 TGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 43 ~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
-+|+..+.++-|.++.+-+|-|... .+. .-.+.|.+.+..+.||+.+.
T Consensus 117 v~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 117 VKLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred EecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 3899999999999999999987665 221 45778899999999998763
No 182
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=58.39 E-value=17 Score=29.35 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=38.5
Q ss_pred CCeEEEeCCCCCCc----HHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEE-cCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 37 GNNLYVTGLSTRVT----NADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTM-ETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 37 ~~~l~V~nLp~~~t----~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
...|||++|....- .+.|...+.+.+ .+..+.+-. ...||+.-.. .+.++.+.+|+++.+..+.-..+-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~S-----sy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRS-----SYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccc-----cccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 45789999875432 234444444333 333333322 2235554444 367888888887776655444444
Q ss_pred Ee
Q 028972 111 VE 112 (201)
Q Consensus 111 V~ 112 (201)
|-
T Consensus 112 ~G 113 (299)
T KOG4840|consen 112 VG 113 (299)
T ss_pred Ee
Confidence 43
No 183
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=57.33 E-value=2 Score=26.42 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=19.1
Q ss_pred cccEEEEEEcC-HHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 78 SCGFAFVTMET-VEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 78 ~~g~afV~f~~-~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..|||||..++ .++.--+-..|++. ++|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 45899999887 22222223335544 566666666655
No 184
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.94 E-value=20 Score=32.04 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=44.3
Q ss_pred EEEeCCCCCCc---HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 40 LYVTGLSTRVT---NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 40 l~V~nLp~~~t---~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
=+||||+.-.. ...|.++-.+||.|..+++-. .-.|...+.+.|++|+. -|+..+.+++.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 46788875433 345666667899999877743 24677789999999998 67888888775
No 185
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=55.71 E-value=6.2 Score=34.05 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=46.0
Q ss_pred CeEEEeCCCCCCcH--------HHHHHHHcC--CCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 38 NNLYVTGLSTRVTN--------ADLEKFFGG--EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 38 ~~l~V~nLp~~~t~--------~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
..+|+.++..+... ++|..+|.. .+.+..|.+-.+.....+.|..|++|.....|++++
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 35677776655443 489999988 577788877777666778889999999999999997
No 186
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=54.99 E-value=42 Score=23.38 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 52 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
.+|.+++.+.| |.+..|..+..+ +.-||++++.+.+..-++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 56788888887 555555555322 3459999999554444443
No 187
>PF14893 PNMA: PNMA
Probab=54.96 E-value=16 Score=30.91 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcC-CCCeeEEEEeeCC-CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGG-EGKVTECHLVTDP-RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
++-..|.|.+||.++++++|++.+.. +-.+-.+.+.... ....+...|+|+|...-+-...=..+.| .|..++|-
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv 92 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG---KGGPWRVV 92 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC---CCCceEEE
Confidence 34557899999999999998887654 2222222221100 0011223788888653332222222332 34556655
Q ss_pred ec
Q 028972 113 KA 114 (201)
Q Consensus 113 ~a 114 (201)
+-
T Consensus 93 ~~ 94 (331)
T PF14893_consen 93 FK 94 (331)
T ss_pred ec
Confidence 43
No 188
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=54.52 E-value=41 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=26.4
Q ss_pred eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 64 VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 64 i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
|..|.++.. ..||.||+....+++..+|..+.+..
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 555555443 46899999998899999998777654
No 189
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.42 E-value=8.6 Score=25.98 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=19.9
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHH
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFF 58 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F 58 (201)
....+|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 456789999999999999998643
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.07 E-value=26 Score=23.65 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEEcCHHHHHHHHHHhCCC--eeCCeeeEEe
Q 028972 82 AFVTMETVEGADRCIKYLNRS--VLEGRLITVE 112 (201)
Q Consensus 82 afV~f~~~~~a~~al~~l~g~--~l~g~~i~V~ 112 (201)
|+|+|.++.-|+..++ +..+ .+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEE
Confidence 6899999999999988 4333 3566555554
No 191
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=53.28 E-value=30 Score=23.80 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=43.4
Q ss_pred CCCCeEEEeCCCCCCc--HHHHHHHHcCCCCeeEEEEeeCCC-CCCcccEEEEEEcC--HHHHHHHHHHhCCCeeC-Cee
Q 028972 35 NPGNNLYVTGLSTRVT--NADLEKFFGGEGKVTECHLVTDPR-TRESCGFAFVTMET--VEGADRCIKYLNRSVLE-GRL 108 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t--~~~L~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~--~~~a~~al~~l~g~~l~-g~~ 108 (201)
+.+..|.|+-.....+ .+.|.++|.+.+.|..+.+..-.. .+.+.-+-.|+|.. .+.+-.+|..+....+. +..
T Consensus 3 ~~g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (108)
T PF14581_consen 3 PKGEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWP 82 (108)
T ss_pred CCCCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCce
Confidence 3455677764433333 467889999999998776544333 34444344566765 33333333333333333 356
Q ss_pred eEEeecc
Q 028972 109 ITVEKAK 115 (201)
Q Consensus 109 i~V~~a~ 115 (201)
|.+....
T Consensus 83 vd~~~~~ 89 (108)
T PF14581_consen 83 VDFVLLD 89 (108)
T ss_pred EEEEEcc
Confidence 6554443
No 192
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=53.06 E-value=5.1 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 52 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
++|++.|..+.....+.- -.+|.-|++.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vk----------L~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK----------LKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhh----------hhhccCCCCHHHHHHHHHHh
Confidence 577777777654433321 16899999998888887654
No 193
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=52.99 E-value=36 Score=22.85 Aligned_cols=48 Identities=25% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
..-|||++++..+-+.-.+.+.+..++- .+.|+... ....||+|-.+-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEcc--CCCCCEEEEEeC
Confidence 3459999999887766555554444332 23333222 225689998773
No 194
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=52.24 E-value=60 Score=20.70 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 52 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.+|.+++.++| +..+.|.- .| .-++.|+.+.+.+.++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG---sG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG---SG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET---TS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC---CC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 44444432 21 12578888889999888887663
No 195
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=51.12 E-value=38 Score=21.87 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=26.8
Q ss_pred HHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 57 FFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 57 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
-+.+||.|..+-=.. .|+.+ |-+.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~--------kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKM--------KYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCc--------cEEEE-EECHHHHHHHHHHHhcCCC
Confidence 467999987763211 26554 6788999999988876543
No 196
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=49.78 E-value=53 Score=19.37 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGK 63 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~ 63 (201)
..++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46788887767888999999999985
No 197
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=49.54 E-value=66 Score=22.20 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHc-CCCCeeEE----EEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 48 RVTNADLEKFFG-GEGKVTEC----HLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 48 ~~t~~~L~~~F~-~~G~i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
+.+..+|++-+. .|+.-.++ .|......+.+.|||.| |++.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 445667765554 45522222 22333344677777776 6676666554
No 198
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=49.02 E-value=44 Score=26.84 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCC---CCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPR---TRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.-+|.|.-||-.-.++-++.+|+..| +|.-..+..+.. -|.+. |..|+..-..-.+.||.+|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhhh
Confidence 34688889998889999999999999 444444444432 24444 7888887777777777655
No 199
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=48.91 E-value=67 Score=21.92 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=27.7
Q ss_pred eEEEeCCCCCCcHHH---HHHHHcCCCCeeEEEE--eeCCCCCCcccEEEEEE
Q 028972 39 NLYVTGLSTRVTNAD---LEKFFGGEGKVTECHL--VTDPRTRESCGFAFVTM 86 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~---L~~~F~~~G~i~~v~i--~~~~~~~~~~g~afV~f 86 (201)
..|+.+||..+.+.. ++..|..+..-..|.+ ..........|++++.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 458899999988755 4566767664444443 22233455666665443
No 200
>CHL00030 rpl23 ribosomal protein L23
Probab=48.64 E-value=56 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTD 72 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~ 72 (201)
..|+.-++..++..+|++.++. |+ .|..|..+..
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4677788899999999999987 55 5666655443
No 201
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=48.38 E-value=57 Score=21.78 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=25.7
Q ss_pred EEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 40 LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
|-+++|.++-. .+++-.+++-..|-.+.|. |..+ .|||.|.. .+...++++.+....+.-+.|+|+.
T Consensus 3 lkfg~It~eeA-~~~QYeLsk~~~vyRvFiN-----gYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTveE 73 (88)
T PF11491_consen 3 LKFGNITPEEA-MVKQYELSKNEAVYRVFIN-----GYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVEE 73 (88)
T ss_dssp EE--S-TTTTT-HHHHHTTTTTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------SS
T ss_pred cccCCCCHHHH-HHHHHHhhcccceeeeeec-----cccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHHH
Confidence 44567755432 2233345565566555553 3333 78999974 5778888888988888888888764
No 202
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=48.36 E-value=17 Score=24.62 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEe
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLV 70 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~ 70 (201)
..|+..++..++..+|++.|++ || .|..|..+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~ 54 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTM 54 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEe
Confidence 3566778999999999999987 55 55566443
No 203
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=47.33 E-value=62 Score=23.60 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHcC-CC--CeeEE---EEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 48 RVTNADLEKFFGG-EG--KVTEC---HLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 48 ~~t~~~L~~~F~~-~G--~i~~v---~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
+.+..+|.+.+.+ |+ ....| .|......+.+.|||.| |++.+.|...
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4556777666553 55 22222 23334445677788876 6666655443
No 204
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=46.96 E-value=70 Score=22.62 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=16.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEE
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTEC 67 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 67 (201)
.|||+++|.....+.|++. .+..|.++
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l 33 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINV 33 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEc
Confidence 4999999977655444432 34445444
No 205
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=46.89 E-value=73 Score=27.67 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCeEEEeC-CCCCCcHHHHHHHHcC----CCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 37 GNNLYVTG-LSTRVTNADLEKFFGG----EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 37 ~~~l~V~n-Lp~~~t~~~L~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
+..+.++. .+......+|..+|.. +|-|+.+.|...+. .....+.++.|.+.++|.+|+..+.
T Consensus 131 G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 131 GEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHHHH
Confidence 44444432 2334444567777753 67788887766653 3334567889999999999986553
No 206
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.92 E-value=26 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.5
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
.+||-|||=.++.++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57899999999999999998776543
No 207
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=45.91 E-value=3.9 Score=25.78 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
...|.|+.+...-..+.+...+...|.-.. +.+... ... --.-+-.|.+.++|+.++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~--~~~-yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKG--GPW-YRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEE--TTC-EEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecC--Cce-EEEEECCCCCHHHHHHHHHHHh
Confidence 345677766544443444444444443322 222221 111 1123347899999999999887
No 208
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=45.85 E-value=85 Score=25.30 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCCCCC--cHHHHHHHHcCCCCe----eEEEEeeCCCCCCcccEEEEEEc
Q 028972 35 NPGNNLYVTGLSTRV--TNADLEKFFGGEGKV----TECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~--t~~~L~~~F~~~G~i----~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
+.+..|+|.-|..+. |..+|+.+|.++|-. -.|.++.++ .|+|+|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 556678888887665 478999999998743 235555554 6777775
No 209
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=44.78 E-value=65 Score=24.27 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEee
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVT 71 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~ 71 (201)
..|+..++..++..+|...|+. || .|..|..+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~ 57 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFN 57 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEe
Confidence 4688889999999999999987 55 566665543
No 210
>PRK10905 cell division protein DamX; Validated
Probab=44.57 E-value=53 Score=27.70 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEE--EEEcCHHHHHHHHHHhCCCe
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAF--VTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~af--V~f~~~~~a~~al~~l~g~~ 103 (201)
..++|-|..+. +++.|.+|..++| +....+......|+. .|.+ -.|.+.++|++||..|-...
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 34556665554 4577888887775 333333333223332 2433 36889999999999886543
No 211
>PRK02886 hypothetical protein; Provisional
Probab=44.54 E-value=52 Score=22.16 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=26.6
Q ss_pred HHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 57 FFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 57 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
.+.+||.|..+-=.. .|+++ |-+.++|++.++.|....|
T Consensus 20 ~LrkyG~I~Y~Skr~--------kYvvl-Yvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRL--------KYAVL-YCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccc--------cEEEE-EECHHHHHHHHHHHhcCCC
Confidence 357899987763211 25544 6788999999988876543
No 212
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=44.06 E-value=54 Score=25.10 Aligned_cols=73 Identities=16% Similarity=0.033 Sum_probs=38.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEE-EEeeCCCCCCcccEEE-EEEcCH---HHHHHHHHHhCCCeeCCeeeEEee
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTEC-HLVTDPRTRESCGFAF-VTMETV---EGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~af-V~f~~~---~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.|.|.-=|..++-++|.++|...-..+.+ .--.|. |.. |-- |-+.+. +.|++.++.+....+.+.+|.++.
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~--Gtq--YRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDR--GTQ--YRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCCCccCCcc--ccc--ceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 46676678888888888887765333222 111111 111 322 333444 445555566655445555666655
Q ss_pred cc
Q 028972 114 AK 115 (201)
Q Consensus 114 a~ 115 (201)
..
T Consensus 135 ~p 136 (174)
T COG0225 135 EP 136 (174)
T ss_pred ec
Confidence 43
No 213
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=43.88 E-value=32 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=24.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEE
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECH 68 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~ 68 (201)
.....|+|||++++..-|..+++..-.+..+.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v 126 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMV 126 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEE
Confidence 34678999999999999998888765543333
No 214
>PRK02302 hypothetical protein; Provisional
Probab=43.85 E-value=55 Score=22.18 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 57 FFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 57 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
.+.+||.|..+-=.. .|+++ |-+.++|++.++.|....
T Consensus 22 ~LrkfG~I~Y~Skk~--------kYvvl-Yvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKRS--------RYLVL-YVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEeccc--------cEEEE-EECHHHHHHHHHHHhcCC
Confidence 357899987763211 26554 678899999998887654
No 215
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=43.79 E-value=84 Score=19.96 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.|.|......---.+|..+|...+ .|..+.+......+......-|+..+.++....|..|...
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 345544444445678888888876 6778777664323333444455667899999988888654
No 216
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=43.60 E-value=13 Score=34.51 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=7.1
Q ss_pred ccCCCCCCCCCCCC
Q 028972 187 RRERSLSAGSSGYR 200 (201)
Q Consensus 187 ~r~Rs~s~~~~~~r 200 (201)
+.+||+.+++|.++
T Consensus 860 ~~drs~~RdRd~r~ 873 (877)
T KOG0151|consen 860 RRDRSRERDRDWRR 873 (877)
T ss_pred ccccCcccchhhhh
Confidence 34555555555443
No 217
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=43.45 E-value=85 Score=19.92 Aligned_cols=50 Identities=26% Similarity=0.230 Sum_probs=28.7
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCccc-EEEEEEc-CHHHHHHHHHHhCC
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCG-FAFVTME-TVEGADRCIKYLNR 101 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g-~afV~f~-~~~~a~~al~~l~g 101 (201)
.-.++.+.|+.+| .+..|.--.. .+..-. +-||+|+ ..+..++||+.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~--~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPS--RRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCC--CCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3567778888887 4444432222 222212 3467776 55667788887754
No 218
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=43.40 E-value=97 Score=20.57 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHcC-CC----CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHH
Q 028972 48 RVTNADLEKFFGG-EG----KVTECHLVTDPRTRESCGFAFVTMETVEGADR 94 (201)
Q Consensus 48 ~~t~~~L~~~F~~-~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 94 (201)
+.+..+|++.+.+ |+ .|.-..|......+.+.|||.| |++.+.+++
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 4455666655543 33 2222244555555667777776 677766654
No 219
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=42.92 E-value=1.5e+02 Score=22.67 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCeEEEeCCCCCC-cHHHHHHHH------cC----CCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHhC
Q 028972 36 PGNNLYVTGLSTRV-TNADLEKFF------GG----EGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYLN 100 (201)
Q Consensus 36 ~~~~l~V~nLp~~~-t~~~L~~~F------~~----~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l~ 100 (201)
.+..|+|.-.|..+ |+.-+.... .. +|.+........+ |-.++|+. +.+.|++||. +-
T Consensus 80 ~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~------G~ilfei~~~~~~~~~akeAlr-~a 152 (172)
T PRK04199 80 SNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEK------GQKIFTVRVNPEHLEAAKEALR-RA 152 (172)
T ss_pred cccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECc------CCEEEEEEecCCCHHHHHHHHH-Hh
Confidence 34567777666543 333333211 12 6766655444433 34555554 6788999988 44
Q ss_pred CCeeCCe
Q 028972 101 RSVLEGR 107 (201)
Q Consensus 101 g~~l~g~ 107 (201)
...|-.+
T Consensus 153 ~~KLP~k 159 (172)
T PRK04199 153 AMKLPTP 159 (172)
T ss_pred hccCCCc
Confidence 4444433
No 220
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=42.74 E-value=1.4e+02 Score=27.25 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=28.1
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
..|-|. .|+++++|.+||. ++..-.|..|.|.+.-++
T Consensus 382 ~~G~A~-VF~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 382 FEGPAK-VFESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEEeEE-EECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 345555 5999999999996 566667888888887665
No 221
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=42.72 E-value=31 Score=23.85 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=16.6
Q ss_pred cEEEEEEcCHHHHHHHHHHh
Q 028972 80 GFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 80 g~afV~f~~~~~a~~al~~l 99 (201)
-|.+++|.+.+...+|+.++
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48899999998888887655
No 222
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=42.50 E-value=1e+02 Score=20.88 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=24.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEee
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVT 71 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~ 71 (201)
..|+..++..++..+|++.|+. || .|..|..+.
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 4667778889999999999987 55 556665443
No 223
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=42.25 E-value=20 Score=31.77 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 47 TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 47 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
......-+..+|+++|-++...+..... |+..|.|+ +.|..+|..++...|.
T Consensus 207 ks~~s~~r~k~fee~g~~~r~el~p~~h-----g~~~vv~~--enan~~m~s~da~ei~ 258 (526)
T KOG2135|consen 207 KSRNSENRRKFFEEFGVLERGELCPTHH-----GCVPVVSK--ENANKTMKSEDAAEIM 258 (526)
T ss_pred cccccHHhhhhhHhhceeeecccccccc-----ccceeEee--ccccccccCCcchhhh
Confidence 4566778889999999887766654432 45566665 6666666655544443
No 224
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=42.17 E-value=20 Score=19.93 Aligned_cols=16 Identities=13% Similarity=0.217 Sum_probs=10.5
Q ss_pred CCCcHHHHHHHHcCCC
Q 028972 47 TRVTNADLEKFFGGEG 62 (201)
Q Consensus 47 ~~~t~~~L~~~F~~~G 62 (201)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998865
No 225
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=41.78 E-value=94 Score=23.89 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=38.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCC-CCcccEEEEEEcCHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT-RESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.=||+|.+.-.+-..|-+.|...|- .|.++..+.. ..+.++-+|.|.+.++..+++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 4588999888888889888888774 2333333322 225578999999999998888755
No 226
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=41.39 E-value=46 Score=21.20 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHcCCCCeeEEEE-eeCCCCCCcccEEEEEEc-CHHHHHHHHHHhCCC
Q 028972 48 RVTNADLEKFFGGEGKVTECHL-VTDPRTRESCGFAFVTME-TVEGADRCIKYLNRS 102 (201)
Q Consensus 48 ~~t~~~L~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~-~~~~a~~al~~l~g~ 102 (201)
.+.+..|.++...|+--.+|.. ..+.-.+.+.|.-+|++. +.++.++|+..|..+
T Consensus 13 ~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 13 SAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQ 69 (76)
T ss_dssp SSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHT
T ss_pred CcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHC
Confidence 4555667777777764333321 112224667788888885 455678888877543
No 227
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=41.37 E-value=1.6e+02 Score=22.72 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=4.9
Q ss_pred CHHHHHHHH
Q 028972 88 TVEGADRCI 96 (201)
Q Consensus 88 ~~~~a~~al 96 (201)
++++|..+|
T Consensus 59 DA~DAvr~L 67 (195)
T KOG0107|consen 59 DAEDAVRYL 67 (195)
T ss_pred cHHHHHhhc
Confidence 455555555
No 228
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.29 E-value=40 Score=21.46 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 81 FAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 81 ~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
+.+|.|.+..+|.+|-+.|....|.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 7899999999999998877665443
No 229
>COG5584 Predicted small secreted protein [Function unknown]
Probab=41.23 E-value=62 Score=22.23 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCC
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPR 74 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~ 74 (201)
||..+..-..+++.|.+++.|+.-+|...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 4555556677899999999999888776653
No 230
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=40.76 E-value=70 Score=25.02 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=33.7
Q ss_pred CcHHHHHHHHcCCCC---eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 49 VTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 49 ~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
.+.+++.++..++|. |....++. .|..++-+...-.++++|..+...|-|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~---GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLA---GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSS---STTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEee---cCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 356777777776653 33333332 3444443333345899999999999888876
No 231
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=40.06 E-value=10 Score=27.61 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=41.4
Q ss_pred eEEEeCCC--CCCcHHHHHHHHcC-CCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 39 NLYVTGLS--TRVTNADLEKFFGG-EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 39 ~l~V~nLp--~~~t~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
...|+.+. ..++...|...+.+ ++....+.+..- ..++..+.|.+++++..++. .....+++..|.++.-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34455442 23555666655543 232222322221 12589999999999999987 45555777777666544
No 232
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=39.83 E-value=83 Score=18.79 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=30.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCH-HHHHHHHHHhCC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETV-EGADRCIKYLNR 101 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~al~~l~g 101 (201)
+|.|......-.-.+|..+|.+++ .|..+........+ ....++++... +....++..|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPG--ISRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCC--eEEEEEEEECCHHHHHHHHHHHhC
Confidence 344533333334567888888876 56666554321111 11233333322 556666666654
No 233
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=39.60 E-value=92 Score=20.86 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=35.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc--CHHHHHHHHHHhCCC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME--TVEGADRCIKYLNRS 102 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~al~~l~g~ 102 (201)
.+|.-.||... ..|+.|+...++..+|.......++...+.+||-|+ +.++.++.++.|+..
T Consensus 11 ~~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 11 ALFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 45556677543 457777777776554444333445556778887775 445566777777654
No 234
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=39.46 E-value=90 Score=23.17 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=36.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
..|+.-+...++..+|++.+++ |+ .|..|..+..+. ...-|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 4566667888899999988887 54 556665544332 12358999976666544433
No 235
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=39.39 E-value=28 Score=28.20 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHc--CCCCe
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFG--GEGKV 64 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~--~~G~i 64 (201)
...++|+|||+.++..-|..++. .||.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 44688999999999999988887 44543
No 236
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=38.77 E-value=1e+02 Score=19.60 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=35.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHc-CCCCe-eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 39 NLYVTGLSTRVTNADLEKFFG-GEGKV-TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~-~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.++.-.||..++-++|...+. .|+.. ..+.+......| -+|.+.+.++.+.|+..+.
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 355556788888888776654 35432 223332221112 3889999999999999654
No 237
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.12 E-value=87 Score=26.83 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=36.9
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
+-++|+..|..---+..+....+ --||.|.+..+.++-|...++..+.+..|
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~--------~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRV--------GKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEec--------CcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 34678888877655555544433 24788999988888888889888777654
No 238
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=37.03 E-value=74 Score=23.73 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
-..+||+|.-+..--+.--+.+|+.|- +|..|.+..............|.+.+..+.+++
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 344677777755545555678899984 778888877654344445555666554444443
No 239
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=36.81 E-value=1.7e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCCCCC--cHHHHHHHHcCCCC-e---eEEEEeeCCCCCCcccEEEEEEc
Q 028972 35 NPGNNLYVTGLSTRV--TNADLEKFFGGEGK-V---TECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~--t~~~L~~~F~~~G~-i---~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
+.+.-|.|..|..+. |..+|+..|.+.|- + -.|.++.++ .++|+|.
T Consensus 92 P~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~-------kGvi~~~ 143 (241)
T COG0217 92 PGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR-------KGVIVVE 143 (241)
T ss_pred CCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec-------cEEEEEC
Confidence 456678899898665 57899999999863 3 246666654 4556665
No 240
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=36.15 E-value=76 Score=21.85 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
..-|||++++..+-+.--+.+-+.++. -.+.|+.. +....||+|..+.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCC
Confidence 345999999887765433333333332 22333332 12233899988754
No 241
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=35.85 E-value=92 Score=30.26 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=24.3
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
-+||-|||-..+..++.||+.|-+..+.
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 4689999999999999999988877665
No 242
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.83 E-value=1e+02 Score=18.75 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=28.7
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.-.+|-++|.+.| .|..+.+.... . .++.-+.+.+.+.|.++|+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHH
Confidence 3467778887776 67777654432 1 3566666777777777776
No 243
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=35.36 E-value=2e+02 Score=26.33 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=28.0
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCC
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~ 118 (201)
+.|-|. .|+++++|.+||. ++..-.|..|.|.+.-++.
T Consensus 397 ~~GpA~-VF~see~a~~ai~--~g~I~~gdVvViRyeGPkG 434 (552)
T PRK00911 397 FTGPAR-VFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKG 434 (552)
T ss_pred eeeeEE-EECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 344454 5999999999997 4666677888888766653
No 244
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.76 E-value=1.3e+02 Score=22.35 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.|+..+.++-|.++.+..|-|..+. -. -..+.|.+.+.++.||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~---------D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EY---------DLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ec---------cEEEEeccHHHHHHHHHHH
Confidence 5788888999999999999876654 11 2356788999999999866
No 245
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=34.57 E-value=19 Score=29.32 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=51.4
Q ss_pred CCCCCeEEEeCCCCCCcHHH-H--HHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 34 ANPGNNLYVTGLSTRVTNAD-L--EKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~-L--~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.+.-..++++++-..+..+- | ...|+.|-.+....++.+. -+...+++|+.|.......++...-+++.+.-..|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 33444566776655555443 3 6677777666666665554 466678999999988887777776677777666655
Q ss_pred Ee
Q 028972 111 VE 112 (201)
Q Consensus 111 V~ 112 (201)
+.
T Consensus 172 ~a 173 (290)
T KOG0226|consen 172 LA 173 (290)
T ss_pred ec
Confidence 44
No 246
>PRK00110 hypothetical protein; Validated
Probab=34.56 E-value=1.6e+02 Score=23.83 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCCCeEEEeCCCCCC--cHHHHHHHHcCCCC-e---eEEEEeeCCCCCCcccEEEEEEc
Q 028972 35 NPGNNLYVTGLSTRV--TNADLEKFFGGEGK-V---TECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~--t~~~L~~~F~~~G~-i---~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
+.+..|.|.-|..+. |..+|+.+|.++|- + -.|.++.++ .|+|+|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~ 143 (245)
T PRK00110 92 PGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIE 143 (245)
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeC
Confidence 456677788787665 46899999999863 3 235555554 6777775
No 247
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=34.34 E-value=1e+02 Score=23.96 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=29.9
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
+.++..+++..++... +.|..+ |...|-+.+...+.++|.+||..+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 5677777777765433 344433 334444566679999999999866
No 248
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=34.14 E-value=86 Score=21.50 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=23.9
Q ss_pred HHHHHcCCCCee-----EEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 54 LEKFFGGEGKVT-----ECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 54 L~~~F~~~G~i~-----~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
+...|++||.=- ++..+.. ...+.-...|+|.+.+.|..+.
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHh
Confidence 456677776311 1222211 2333458999999998887654
No 249
>PHA01632 hypothetical protein
Probab=33.43 E-value=36 Score=20.83 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.8
Q ss_pred EEeCCCCCCcHHHHHHHHcC
Q 028972 41 YVTGLSTRVTNADLEKFFGG 60 (201)
Q Consensus 41 ~V~nLp~~~t~~~L~~~F~~ 60 (201)
.|..+|...|+++|+.++.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 35689999999999877654
No 250
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=33.20 E-value=1.3e+02 Score=20.36 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=26.9
Q ss_pred CCCCcHHHHH-------HHHcCC-CCeeEEEEeeC-----CCCCCccc-EEEEEEcCHHHHHHHHH
Q 028972 46 STRVTNADLE-------KFFGGE-GKVTECHLVTD-----PRTRESCG-FAFVTMETVEGADRCIK 97 (201)
Q Consensus 46 p~~~t~~~L~-------~~F~~~-G~i~~v~i~~~-----~~~~~~~g-~afV~f~~~~~a~~al~ 97 (201)
.++++++++. +++... |+|..+...-. +..+...| |.++.|.-..++.+.|+
T Consensus 15 ~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 15 KPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4455555544 445444 46666542111 11233445 57888886666666554
No 251
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=33.13 E-value=59 Score=26.04 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=20.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGK 63 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~ 63 (201)
.+.|+|||+.++...|..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 3789999999999999999875543
No 252
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=32.69 E-value=2e+02 Score=26.25 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=35.2
Q ss_pred CcHHHHHHHH----cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 49 VTNADLEKFF----GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 49 ~t~~~L~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.+..+|..+| ..+|-|+.+.+...+. .....++++.|.+.++|.+|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~-P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKI-PQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecC-CcceEEEEEEcCCHHHHHHHHHHHH
Confidence 3445777776 2478888887765442 2334578899999999988887653
No 253
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=32.31 E-value=2.3e+02 Score=26.30 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.6
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCC
Q 028972 79 CGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 79 ~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~ 118 (201)
.|-| +.|+++++|.+||. ++..-.|..|.|.+.-++.
T Consensus 448 ~GpA-~VFdsee~a~~ai~--~g~I~~gdVvVIRyeGPkG 484 (615)
T PRK12448 448 TGPA-RVFESQDDAVEAIL--GGKVKAGDVVVIRYEGPKG 484 (615)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 3444 45999999999996 4666678888888876654
No 254
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=32.07 E-value=1.4e+02 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=21.3
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
..||.||++....+...++..+.|..
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv~ 62 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHVR 62 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCEE
Confidence 67899999998888888887777653
No 255
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=31.97 E-value=79 Score=22.06 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=27.4
Q ss_pred CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCC
Q 028972 60 GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 60 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~ 118 (201)
+-|.|.+|.+...++ |+|+.|++--. + ...+.|..++|.+...-.
T Consensus 28 ~NGtv~qI~~Y~~pN------Yvf~~FEnG~t-------v-sv~~~gs~~kI~~~Dd~r 72 (121)
T PF06919_consen 28 KNGTVAQIEQYMTPN------YVFMRFENGIT-------V-SVTYNGSIFKIGLDDDHR 72 (121)
T ss_pred CCCcEEEEeeecCCC------EEEEEecCCCE-------E-EEEecCcEEEEEecCchh
Confidence 567888887666553 99999975211 0 112467777776654443
No 256
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=31.82 E-value=57 Score=27.67 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=33.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCC---CCe--eEEEEee------CCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGE---GKV--TECHLVT------DPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~---G~i--~~v~i~~------~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
....+||.++-..+..+.|..+-+.. -.+ .++..+. +. -.+.-.|+.|.|.++++|.+..+
T Consensus 159 ka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~-l~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 159 KAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDA-LDKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred heeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHH-HHhhcCcceEEEcCHHHHHHHHH
Confidence 34467888887777665554333222 221 1111100 00 01112489999999999988776
No 257
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=31.77 E-value=1.1e+02 Score=20.47 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.5
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 63 KVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 63 ~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
+|++|.|..-...+..++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766668899999999976
No 258
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=31.73 E-value=1.2e+02 Score=23.53 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=27.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCC--CCCCcccEEEEEEcCH
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDP--RTRESCGFAFVTMETV 89 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~ 89 (201)
....|.|||-... -..|.+....+..-+ .+|.++ |.|+.|...
T Consensus 87 lHWlV~nIPg~~~--------~~~G~~i~~Y~~P~Pp~~tG~HR-yVfll~rQ~ 131 (185)
T KOG3346|consen 87 LHWLVTNIPGTDG--------ISKGQEISEYLGPGPPKGTGLHR-YVFLLYRQP 131 (185)
T ss_pred EEEEEEeecCCcc--------ccCCeEeeeeeCCCCCCCCCceE-EEEEEEEcC
Confidence 3567889987654 345655554444333 478887 999999753
No 259
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=31.66 E-value=1.3e+02 Score=18.73 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=30.5
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcC---HHHHHHHHHHhCC
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKYLNR 101 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~al~~l~g 101 (201)
.-.+|.+.|+.+| .|..|.-...+. ....-..||+++. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4567888888886 566664333221 1222356788874 5666777776644
No 260
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=31.56 E-value=57 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=18.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG 60 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~ 60 (201)
.++|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 261
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=31.42 E-value=1.8e+02 Score=20.03 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 47 TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 47 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.+-++++|.-+...-|.|.+|.+...- -| .-.|.+...+..+++..|+.|+..
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~-YG--~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPV-YG--EITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETT-TE--EEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCC-Cc--EEEEEEecCCHHHHHHHHHHHhcc
Confidence 344567788888877788888776532 22 235677888999999999888543
No 262
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=31.16 E-value=61 Score=24.70 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=33.5
Q ss_pred CCeEEEeCCCC--CCc-HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 37 GNNLYVTGLST--RVT-NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 37 ~~~l~V~nLp~--~~t-~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
-..+||-+.+. +.. .+.|.+..++||.|..+.+... |.=+.+++....+-+.+.+.
T Consensus 21 ~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~--------y~nlt~K~~~~~~w~~~~c~ 79 (195)
T PF01762_consen 21 VKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDS--------YRNLTLKTLAGLKWASKHCP 79 (195)
T ss_pred EEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccc--------cchhhHHHHHHHHHHHhhCC
Confidence 34678777776 322 3457888899999988776432 33334444444444544443
No 263
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=30.49 E-value=2.7e+02 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.9
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccCC
Q 028972 84 VTMETVEGADRCIKYLNRSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 84 V~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~~ 118 (201)
+.|+++++|.+||. ++..-.|..|.|.|.-++.
T Consensus 419 ~VFds~e~~~~ai~--~g~l~~g~VvVIRyeGPkG 451 (575)
T COG0129 419 RVFDSQEDAIKAIL--DGELKAGDVVVIRYEGPKG 451 (575)
T ss_pred EEECCHHHHHHHHh--cCCCCCCeEEEEeccCCCC
Confidence 46999999999985 6776677777888876664
No 264
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=30.46 E-value=1.2e+02 Score=17.89 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=19.2
Q ss_pred EEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEee
Q 028972 40 LYVTGLSTRVTNADLEKFFGGEG-KVTECHLVT 71 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~ 71 (201)
|+|..-...-.-.+|..+|.+++ .|..+.+..
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence 33433333345677888888886 666666543
No 265
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=30.38 E-value=1.3e+02 Score=18.36 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=36.0
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHH
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~ 98 (201)
..+++.+.+...-+|..|..+ +|..-=.+.|.+.+.++....+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSV----TGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE----SSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEE----eCCCCEEEEEEECCHHHHHHHHHH
Confidence 467788889999999999887 444455788999999999999654
No 266
>PRK12378 hypothetical protein; Provisional
Probab=29.99 E-value=1.6e+02 Score=23.67 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCCCeEEEeCCCCCC--cHHHHHHHHcCCCC-e---eEEEEeeCCCCCCcccEEEEEEc
Q 028972 35 NPGNNLYVTGLSTRV--TNADLEKFFGGEGK-V---TECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~--t~~~L~~~F~~~G~-i---~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
+.+..|.|.-|..+. |..+|+.+|.++|- + -.|.++.++ .++|+|.
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~i~ 140 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDH-------KGVFVFE 140 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeec-------ceEEEeC
Confidence 456678888887765 46899999999864 3 235555543 4555553
No 267
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=29.55 E-value=1.8e+02 Score=19.46 Aligned_cols=55 Identities=5% Similarity=0.148 Sum_probs=33.6
Q ss_pred eEEEeCCCCCCcHHHHH----HHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 39 NLYVTGLSTRVTNADLE----KFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~----~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
-|+|..++..++-++|. ++|.-.- ..-.++++-+ .|. .|.|.+.++.+.|+..+.
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DE--EGD-----p~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDE--EGD-----PCTISSQMELEEAFRLYE 69 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECC--CCC-----ceeecCHHHHHHHHHHHH
Confidence 47788888888866554 4444322 2333444432 333 467889999999988543
No 268
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.47 E-value=51 Score=22.19 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=25.1
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcC-CCCeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGG-EGKVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
..-|||++++..+-+.--+.+-+. .++ -.+.|+.. +....||+|-.+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe--CCCCCCcEEEecCC
Confidence 345999999887765432222222 222 12223222 22244788877654
No 269
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=29.41 E-value=84 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=19.0
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGG 60 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~ 60 (201)
.-+.|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 45778999999988888888764
No 270
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=29.40 E-value=1.1e+02 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.1
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCC
Q 028972 80 GFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 80 g~afV~f~~~~~a~~al~~l~g~ 102 (201)
||.||++.-.+++..+|..+.+.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 89999998766667777777664
No 271
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=29.19 E-value=1.7e+02 Score=19.09 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=42.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.|+|.|-|.- -+.+..+|..-| .|..+.+-.....+.++ +.++...+.+..++.+++|+..
T Consensus 6 si~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCC
Confidence 4677777653 355778888777 67777766444334443 5677678999999999888765
No 272
>PHA03008 hypothetical protein; Provisional
Probab=29.14 E-value=95 Score=24.41 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEee
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVT 71 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 71 (201)
.+.-+-.+||.|+..--+..-|+-+|.+|-.+.+|.++.
T Consensus 17 ~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvp 55 (234)
T PHA03008 17 IDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVP 55 (234)
T ss_pred CcccccEEEEecccccccccHHHHHHhhccccceEEEcc
Confidence 344566789999998888889999999999888887654
No 273
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=28.78 E-value=82 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=17.1
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 79 CGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 79 ~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
-|..+|-|.+.++|++.++...|.
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~GG~ 137 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEHGGK 137 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHTEEE
T ss_pred CCCcccccCCHHHHHHHHHHcCCE
Confidence 467899999999999999866443
No 274
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.74 E-value=1.3e+02 Score=17.80 Aligned_cols=48 Identities=4% Similarity=0.126 Sum_probs=24.3
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.-.+|..+|.+++ .|..+..... .....+...|..++. +..++++.|.
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~i~i~v~~~-~~~~~i~~l~ 60 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRK--EKGDQALMVIEVDQP-IDEEVIEEIK 60 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEec--cCCCeEEEEEEeCCC-CCHHHHHHHH
Confidence 4567788888776 5666654331 111222334555543 4444444443
No 275
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=28.65 E-value=1.7e+02 Score=18.97 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=37.4
Q ss_pred EEEeCCCCCCcHHHHHHHHcCC-------CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 40 LYVTGLSTRVTNADLEKFFGGE-------GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~~-------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
|..-+||..+|.++|.++..+. ..|.-+........ .+-||+.+=.+++.+.++-+.- |..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~a-G~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRA-GLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHc-CCC
Confidence 4456888888888887765543 33444433333222 2457777777888888877743 654
No 276
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=28.56 E-value=59 Score=27.01 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=18.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG 60 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~ 60 (201)
.+.|.|||+.++...|..+++.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4788999999999888888864
No 277
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=28.48 E-value=1.3e+02 Score=17.50 Aligned_cols=42 Identities=12% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 52 ADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 52 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
..|..+|.+.| .|..+.+.... ...+...+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 45666777765 67777655432 23456677778877777765
No 278
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=27.89 E-value=2e+02 Score=27.54 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=40.4
Q ss_pred eEEEeCCC--CCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 39 NLYVTGLS--TRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 39 ~l~V~nLp--~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
-|+|.+.. ..++......+|..|| +|.-+.+++.+..++.. +. -.++.++||..||.....-..|
T Consensus 311 ~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E--~I----L~~eF~~ai~yLNqflp~e~rl 378 (868)
T KOG1888|consen 311 DIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRE--SI----LREEFENAIDYLNQFLPPENRL 378 (868)
T ss_pred CeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchh--HH----HHHHHHHHHHHHhccCCCccee
Confidence 47776665 4667788899999998 55556666654322221 11 2467788888888554444333
No 279
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=27.86 E-value=1.6e+02 Score=18.56 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcC--CCCeeEEEEe
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGG--EGKVTECHLV 70 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~i~ 70 (201)
++++...+.+|.|-+.+-.-.+++|...|.. .|+-..|.+.
T Consensus 13 N~KA~~~~~tl~vDg~~v~~PD~El~sA~~HlH~GEkA~V~Fk 55 (68)
T PF09122_consen 13 NPKATLDNATLIVDGEIVENPDAELKSALVHLHIGEKAQVFFK 55 (68)
T ss_dssp S-B--TTT--EEETTEEESS--HHHHHHHTT-BTT-EEEEEET
T ss_pred CccccccceEEEEcCeEcCCCCHHHHHHHHHhhcCceeEEEEe
Confidence 3455556778889888877778888888875 4666555554
No 280
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=27.76 E-value=1.8e+02 Score=19.05 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCCCCCcHHHHHHH-HcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 44 GLSTRVTNADLEKF-FGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 44 nLp~~~t~~~L~~~-F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.+|.-+.-+||..- -..||...++.+..+ --.|-..+.++..+||+.++.. -..+.|.|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s-~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRS-PHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccC-ccccceeEe
Confidence 45666666666544 457898877766543 3677888999999999977763 333444443
No 281
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.68 E-value=33 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=9.8
Q ss_pred CcccEEEEEEcCH
Q 028972 77 ESCGFAFVTMETV 89 (201)
Q Consensus 77 ~~~g~afV~f~~~ 89 (201)
..+.|+||+|.+-
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 3456999999763
No 282
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=27.53 E-value=77 Score=20.01 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEE
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFV 84 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 84 (201)
+.+|+.+|-+.-+|+++.|...+.-+ +|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 56678888888889998887655333 355665
No 283
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=27.04 E-value=3.6e+02 Score=24.81 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=26.6
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCCee--CCeeeEEeecccCC
Q 028972 79 CGFAFVTMETVEGADRCIKYLNRSVL--EGRLITVEKAKRSR 118 (201)
Q Consensus 79 ~g~afV~f~~~~~a~~al~~l~g~~l--~g~~i~V~~a~~~~ 118 (201)
.|-|. .|+++++|.+||. ++..- .|..|.|.+.-++.
T Consensus 401 ~G~A~-VF~see~a~~ai~--~g~i~i~~gdVvVIRyeGPkG 439 (571)
T PRK06131 401 EGRAV-VFEGYEDYKARID--DPDLDVDEDTVLVLRNAGPKG 439 (571)
T ss_pred EeeeE-EECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCC
Confidence 44554 5999999999985 56532 67788888766654
No 284
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=26.93 E-value=1.9e+02 Score=18.90 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=31.4
Q ss_pred EEEeCCCCCCcHHHHHHHH-------cCCCCeeEEEEeeCCCCC---CcccEE-EEEEcCHHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFF-------GGEGKVTECHLVTDPRTR---ESCGFA-FVTMETVEGADRC 95 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F-------~~~G~i~~v~i~~~~~~~---~~~g~a-fV~f~~~~~a~~a 95 (201)
|.+..|...++++++.+++ .+.-.|..+.+-.+-... ..--++ +++|++.++.+.-
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y 70 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAY 70 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHH
Confidence 4455677788877765443 334456666655443222 122344 4688888776543
No 285
>PF15063 TC1: Thyroid cancer protein 1
Probab=26.91 E-value=36 Score=22.28 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCe
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKV 64 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i 64 (201)
+--+.||-.+++...|..+|..-|..
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccch
Confidence 44467888899999999999999965
No 286
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.83 E-value=1.7e+02 Score=24.17 Aligned_cols=61 Identities=5% Similarity=-0.098 Sum_probs=34.5
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
.+|..++.++|++.|...+.-..+.+......... ..|++.-..-..+++.+..+....++
T Consensus 56 ~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~-ri~vl~Sg~g~nl~al~~~~~~~~~~ 116 (286)
T PRK13011 56 HSEEGLDEDALRAGFAPIAARFGMQWELHDPAARP-KVLIMVSKFDHCLNDLLYRWRIGELP 116 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhCcEEEEeecccCc-eEEEEEcCCcccHHHHHHHHHcCCCC
Confidence 47877888999988888765444433333222222 35555555555555555544444443
No 287
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=26.77 E-value=61 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=27.1
Q ss_pred CeEEEeCCCCC-CcHHHHHHHHcCCCCeeEEEEee
Q 028972 38 NNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVT 71 (201)
Q Consensus 38 ~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~ 71 (201)
.-|.|-|||.. .+++.|..+.+.+|++..+....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 34667899976 56788899999999998887654
No 288
>PRK11633 cell division protein DedD; Provisional
Probab=26.68 E-value=2.7e+02 Score=22.24 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=45.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEE-EEcCHHHHHHHHHHhCCC-eeCCeee
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFV-TMETVEGADRCIKYLNRS-VLEGRLI 109 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV-~f~~~~~a~~al~~l~g~-~l~g~~i 109 (201)
.+.|.|+-|......+.|.+-+..-|--.++.-.... .|.-. -.|| =|.+.+.|++++..|+.. -|.|..+
T Consensus 149 ~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~-~G~~t-RV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~Vv 221 (226)
T PRK11633 149 AYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPV-QGKIT-RIYVGPDASKDKLKGSLGELKQLSGLSGVVM 221 (226)
T ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecC-CCcEE-EEEeCCCCCHHHHHHHHHHHHHhcCCCceEE
Confidence 4678888887777777888878777755554332211 22211 1333 356899999999988874 5777554
No 289
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=26.63 E-value=90 Score=27.24 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=38.0
Q ss_pred eCCCCCCcHHHHHHHHc----CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 43 TGLSTRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 43 ~nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
.+|-.+-|.-+|+.+|- ..|.|+.|.|+..+ ..+....||+-.++-+++++++
T Consensus 230 ~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 230 SSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHHH
Confidence 45566777788999883 35778888887655 4455568999888887776654
No 290
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=26.61 E-value=1.6e+02 Score=18.17 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=29.5
Q ss_pred HHHHHHcCCCCeeEEEEeeCC--CCCCcccEEEEEEcCHHHHHHHHH-HhCCCeeC
Q 028972 53 DLEKFFGGEGKVTECHLVTDP--RTRESCGFAFVTMETVEGADRCIK-YLNRSVLE 105 (201)
Q Consensus 53 ~L~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~al~-~l~g~~l~ 105 (201)
+|++++.++..|.++.++... ..| ..-+|||.. +.++..+.|. .|....+-
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g-~~l~a~vv~-~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWG-ERLVAFVVL-DEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTE-EEEEEEEEE-HHHHHHHHHHHHS-GGGS-
T ss_pred CHHHHHhcCCCccEEEEEEEEccccc-ccceeEEEe-eecccccchhhhCCCccee
Confidence 577888888888887654433 223 455889888 4444444443 34444433
No 291
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=26.47 E-value=1.4e+02 Score=26.87 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=30.2
Q ss_pred CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 49 VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 49 ~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
+-+++|..-|.-+-.-..+.-+. +. .|++=+.|.++++|++.++.+...
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFe----gd-dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFE----GD-DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eehHHhhhhceeccCccceeeec----cc-cceeeecccCHHHHHHHHHHHHHH
Confidence 45667777776554332222211 11 247778899999999998877554
No 292
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=26.41 E-value=2.9e+02 Score=24.04 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=40.3
Q ss_pred CcHHHHHHHHcCCC--C-eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC----CeeCCeeeEEeecc
Q 028972 49 VTNADLEKFFGGEG--K-VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR----SVLEGRLITVEKAK 115 (201)
Q Consensus 49 ~t~~~L~~~F~~~G--~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g----~~l~g~~i~V~~a~ 115 (201)
.+.+++..+-.++| + |...++.. .|..++-+...-++.++|.++.+.|-| +.+.|..+..-+..
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~a---GGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlve 96 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHA---GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVE 96 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeee---cCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEE
Confidence 45677887777886 2 23334433 333443344444689999999998888 77788766544443
No 293
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=26.39 E-value=53 Score=26.40 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=34.2
Q ss_pred CCCCCCcHHHHHH-HHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 44 GLSTRVTNADLEK-FFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 44 nLp~~~t~~~L~~-~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.|..+--+++|+. .|+.++++..+.+..+..+|.+. ..|-.=+++++..++++.|
T Consensus 14 ~i~~~~a~~~i~~~~~~~~~~~~k~D~~R~~RtG~pE-vv~a~gKt~eqi~~i~~~~ 69 (254)
T COG1691 14 KISLEEAEEQIKSLAFESLGEFAKLDIHREKRTGFPE-VVFAPGKTPEQIVEIVEVL 69 (254)
T ss_pred CccHHHHHHHHhhhhhhhhchhhhccchhhccCCCce-EeecCCCCHHHHHHHHHHH
Confidence 3333334555665 67778878777777766665443 3444456778777777655
No 294
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=26.17 E-value=1.5e+02 Score=17.48 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=25.6
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEc-CHHHHHHHHHHh
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKYL 99 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~-~~~~a~~al~~l 99 (201)
.-.+|-.+|...| .|..+........ ..+.|+.+. +...++.+++.|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 3567788888877 6666666554322 234444442 344444444443
No 295
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=25.93 E-value=2e+02 Score=20.08 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=12.8
Q ss_pred CeEEEeCCCCCCcHHHHH
Q 028972 38 NNLYVTGLSTRVTNADLE 55 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~ 55 (201)
..||||++|.....+.|.
T Consensus 7 ~~l~~g~~~~~~d~~~L~ 24 (139)
T cd00127 7 PGLYLGSYPAASDKELLK 24 (139)
T ss_pred CCeEECChhHhcCHHHHH
Confidence 369999999766555554
No 296
>PRK07868 acyl-CoA synthetase; Validated
Probab=25.80 E-value=5e+02 Score=25.48 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc-----CHHHHHHHHHHhCCCee
Q 028972 48 RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-----TVEGADRCIKYLNRSVL 104 (201)
Q Consensus 48 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~-----~~~~a~~al~~l~g~~l 104 (201)
.+...+|+.++.+...|..+.++-.+......-.|||... +.++..+++..|....+
T Consensus 868 ~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~v 929 (994)
T PRK07868 868 PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLG 929 (994)
T ss_pred eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcC
Confidence 3667899999999988988766544333333457888764 34555566655544443
No 297
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=25.48 E-value=1.2e+02 Score=22.63 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=33.6
Q ss_pred eEEEeCCCC-CCcHHHHHHHHcC-CCC-eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 028972 39 NLYVTGLST-RVTNADLEKFFGG-EGK-VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 39 ~l~V~nLp~-~~t~~~L~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 101 (201)
.+|+++|.. ..+-++|+..+.. |++ +..+.+...+ .-+.+.|+|.-+-+|...|..|-.
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~----~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVE----PWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccc----cCceEEEEEechHHHHHHHHHHhh
Confidence 456788861 1223445544444 222 2233332222 224899999999999888877744
No 298
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=25.21 E-value=2e+02 Score=22.46 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred CcHHHHH---HHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 49 VTNADLE---KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 49 ~t~~~L~---~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
+++.+|. .++.+|| |.++ |+.+..++.+.-..|+.=.+.+.+..|++.+....+...
T Consensus 39 i~~~~lk~F~k~AkKyG-V~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYG-VDYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred cCHhhHHHHHHHHHHcC-CceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 4444554 4566787 4444 444544444443455555688888999988877665443
No 299
>PRK12450 foldase protein PrsA; Reviewed
Probab=25.07 E-value=1.4e+02 Score=24.86 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 48 RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 48 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.+|+++|+.+|..|.+ .+. ..+|.+.+.+.|+.+++.|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998732 111 23577889999999999885
No 300
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=25.01 E-value=2.1e+02 Score=21.53 Aligned_cols=60 Identities=15% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCCCCCCCeEEEeCCC--C-CCcH-------HHHHHHHcCCCCeeEEEEeeCCCCCCcccEE-EEEEcCHH
Q 028972 31 PDAANPGNNLYVTGLS--T-RVTN-------ADLEKFFGGEGKVTECHLVTDPRTRESCGFA-FVTMETVE 90 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp--~-~~t~-------~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~a-fV~f~~~~ 90 (201)
|.+..+...||...|= . -+.. ..|..+=..-|+|..|.-+.++.-..-+.|| ++.|.+..
T Consensus 11 PTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSRs 81 (169)
T KOG0829|consen 11 PTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSRS 81 (169)
T ss_pred CCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccCC
Confidence 4445555567766551 1 1222 2344444456999998766666555556666 46676543
No 301
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.91 E-value=1.4e+02 Score=20.36 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.0
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 63 KVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 63 ~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
+|++|.|..-...|+-++||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777766555567888899898876
No 302
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=24.86 E-value=1.8e+02 Score=20.05 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHH
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADR 94 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 94 (201)
..+|.+.+...| |.+..|.....+ +.-|+++++.+.+.+.+
T Consensus 25 WPEv~~~l~~~G-i~~ysIf~~g~~--~~LF~~~E~~~~~~~~~ 65 (106)
T PF05336_consen 25 WPEVLAALREAG-IRNYSIFRDGDT--GRLFMYMETDDFDADMA 65 (106)
T ss_dssp -HHHHHHHHHCT-EEEEEEEEETTT--TEEEEEEEECT-CHHHH
T ss_pred CHHHHHHHHHCC-CeEEEEEEeCCC--CEEEEEEEecChhhHHH
Confidence 356667777776 667666665332 34588888888333333
No 303
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=24.68 E-value=1.7e+02 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHcCCC--CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 53 DLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 53 ~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.|++.|+++| .|+.+ .|..-|.-||-+-..++|++.++.|
T Consensus 44 i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~~~~~~~~l 85 (268)
T TIGR01743 44 IIKETFEKFGIGKLLTV-------PGAAGGVKYIPKMSQAEAEEFVEEL 85 (268)
T ss_pred HHHHHHHhcCCceEEEe-------CCCCCCeEEEeCCCHHHHHHHHHHH
Confidence 4688898764 44433 4556678888888888888877655
No 304
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.47 E-value=1.9e+02 Score=18.35 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCCCCc-HHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEc
Q 028972 44 GLSTRVT-NADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 44 nLp~~~t-~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
|.|..+- ..||-.+.-.|| .|..-.+..+- .+|||.|-
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDG------kWCyiv~w 45 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDG------RWCYIVFW 45 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCC------cEEEEEEE
Confidence 5665544 567877777888 44555554432 29999884
No 305
>PLN02707 Soluble inorganic pyrophosphatase
Probab=23.67 E-value=46 Score=27.36 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEE-EEcCHHHHHHHHHHhCC
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFV-TMETVEGADRCIKYLNR 101 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV-~f~~~~~a~~al~~l~g 101 (201)
-++|+++|..|-.... +...-|||+ +|.+.+.|.+.|+..+.
T Consensus 207 l~~I~~fF~~YK~~eG---------K~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 207 LTAIRDWFRDYKIPDG---------KPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHHhcCCCC---------CceeeccccCCcCCHHHHHHHHHHHHH
Confidence 3678888888843211 111125664 78899999888876554
No 306
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.65 E-value=1.7e+02 Score=17.24 Aligned_cols=45 Identities=11% Similarity=0.193 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 51 NADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 51 ~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
-.+|..+|.++| .|..+...... ........+..++.+.+.++|+
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~--~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEK--KGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccC--CCCeEEEEEEeCCHHHHHHHHH
Confidence 356667777775 66655543321 1122344555667666666666
No 307
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=23.63 E-value=1.2e+02 Score=25.68 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTM 86 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f 86 (201)
-+...||++|-.+.--++|..++.+++ .+..|.+.. +...++|+|..
T Consensus 60 G~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~----~~~T~~a~i~v 107 (330)
T KOG2855|consen 60 GGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDE----NARTACATITV 107 (330)
T ss_pred CcceeeeecccchhhHHHHHHHHhhCCcccccceecC----CCceEEEEEEE
Confidence 467889999999998899999999976 233333332 33445665543
No 308
>PRK09213 pur operon repressor; Provisional
Probab=23.52 E-value=1.7e+02 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.0
Q ss_pred HHHHHHcCCC--CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 53 DLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 53 ~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.|++.|+++| .|..+ .|..-|.-||-+...++|+..++.|.
T Consensus 46 i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~a~~~~~~L~ 88 (271)
T PRK09213 46 IIKETFEKQGIGTLETV-------PGAAGGVKYIPSISEEEAREFVEELC 88 (271)
T ss_pred HHHHHHHhcCCceEEEe-------CCCCCCeEEEcCCCHHHHHHHHHHHH
Confidence 4688898764 44433 45566788888888888888776663
No 309
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=23.51 E-value=3.3e+02 Score=23.62 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=31.8
Q ss_pred cHHHHHHHHcCCCC---eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 50 TNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 50 t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
+.+++.+...++|. |..+.+.. ...++.-|..+. .+.+++..|.+.|-+..|
T Consensus 27 ~~~ea~~~a~~lg~p~~VvK~qv~~-g~Rgk~GGV~l~--~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 27 SPEQAVYRARELGGWHWVVKAQIHS-GARGKAGGIKLC--RTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred CHHHHHHHHHHcCCCcEEEEeeecc-CCCCcCCeEEEE--CCHHHHHHHHHHHhcchh
Confidence 56677777777764 33433331 123444444444 589999999988877654
No 310
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.45 E-value=1.7e+02 Score=23.70 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=37.3
Q ss_pred CCeEEEeCCCCC-----CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEE---cCHHHHHHHHHHhC
Q 028972 37 GNNLYVTGLSTR-----VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTM---ETVEGADRCIKYLN 100 (201)
Q Consensus 37 ~~~l~V~nLp~~-----~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f---~~~~~a~~al~~l~ 100 (201)
+.+|.|.|++.. .+.++|..++..++....+.+..|. +.+|+.- .+.+....+++.+.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt------~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT------CHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh------hhHHhcCCCcCCHHHHHHHHHHHH
Confidence 467999999743 4788999999988754556666663 2333322 23556666666554
No 311
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.45 E-value=2.4e+02 Score=18.89 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=30.7
Q ss_pred EEEeCCCCCC-cHHHHHHHHcCCC-CeeEEEEeeCCCCCCccc-EEEEEEcC--HHHHHHHHHHhCC
Q 028972 40 LYVTGLSTRV-TNADLEKFFGGEG-KVTECHLVTDPRTRESCG-FAFVTMET--VEGADRCIKYLNR 101 (201)
Q Consensus 40 l~V~nLp~~~-t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g-~afV~f~~--~~~a~~al~~l~g 101 (201)
..|..|+... .-.++..+|+.+| .+..|.--.. .+..-. +-||+|+- .+.+++||+.|..
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~--~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPS--RLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC--CCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 3344444432 3466778888886 4444432221 111112 45677763 4555677776643
No 312
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.41 E-value=1.8e+02 Score=17.57 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=28.1
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.-.+|..+|.++| .|..+....... + ..+...+.+...++++++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~-~-~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIRE-G-IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeec-C-CcEEEEEEECCHHHHHHHHHHH
Confidence 3467888888877 666665444321 1 2345567776555666666555
No 313
>PLN00168 Cytochrome P450; Provisional
Probab=22.81 E-value=2.9e+02 Score=24.47 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=34.1
Q ss_pred eEEEeCCCCCC-----cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHH
Q 028972 39 NLYVTGLSTRV-----TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~-----t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~ 98 (201)
.-+|||+..-. ....+.++..+||.|..+.+.. .-+|...+++.++.++..
T Consensus 43 ~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~dpe~~~~il~~ 98 (519)
T PLN00168 43 VPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGS---------RLSVFVADRRLAHAALVE 98 (519)
T ss_pred CcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCC---------ccEEEECCHHHHHHHHHh
Confidence 45678875321 1345677788999887666532 346677799999999863
No 314
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.69 E-value=1.2e+02 Score=20.68 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=18.1
Q ss_pred cEEEEEEcCHHHHHHHHHHhC
Q 028972 80 GFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 80 g~afV~f~~~~~a~~al~~l~ 100 (201)
.+|.|+|.+.+.+..|.+.|-
T Consensus 52 pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 52 PMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EeEEEECCChHHHHHHHHHHH
Confidence 489999999999999987664
No 315
>PLN02655 ent-kaurene oxidase
Probab=21.64 E-value=1.8e+02 Score=25.35 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=33.2
Q ss_pred EEeCCCCCC---cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 41 YVTGLSTRV---TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 41 ~V~nLp~~~---t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
+||||..-. ....+.+++.+||.|..+.+.. .-+|...+++.++.++.
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~~pe~~k~il~ 59 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGA---------SSVVVLNSTEVAKEAMV 59 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEECC---------EeEEEeCCHHHHHHHHH
Confidence 567764321 2457888889999987666532 45666778999999886
No 316
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=21.64 E-value=97 Score=29.54 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.4
Q ss_pred ccEEEEEEcCHHHHHHHHHHh
Q 028972 79 CGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 79 ~g~afV~f~~~~~a~~al~~l 99 (201)
.+.|||+|++...|+.|.+..
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~ 377 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQ 377 (827)
T ss_pred cccEEEEEehhHHHHHHHHhh
Confidence 458999999999999999854
No 317
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=21.61 E-value=2.3e+02 Score=17.97 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=30.3
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcC---HHHHHHHHHHhCC
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKYLNR 101 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~al~~l~g 101 (201)
.-.+|.++|.++| .|..+...... .....-..||+++. .+..+++++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567788888886 66666544332 12222244566663 5677778777665
No 318
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=21.58 E-value=2.7e+02 Score=18.85 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=39.7
Q ss_pred eCCCCCCcHHHHHHH----------HcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 43 TGLSTRVTNADLEKF----------FGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 43 ~nLp~~~t~~~L~~~----------F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
-+||.+++.+++.++ +..-|.+..++-+ .|....++++.-++.++..+.|..|.=..+
T Consensus 9 v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~ 76 (91)
T PF02426_consen 9 VNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLPLFPY 76 (91)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCCCccc
Confidence 378888887654333 4455888887665 344456888888899998888776655443
No 319
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=21.51 E-value=79 Score=22.30 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHcCCCCeeEEEEe
Q 028972 47 TRVTNADLEKFFGGEGKVTECHLV 70 (201)
Q Consensus 47 ~~~t~~~L~~~F~~~G~i~~v~i~ 70 (201)
..+|.++|++.|..|-.-.++.|+
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEEE
Confidence 478999999999999765555443
No 320
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=21.41 E-value=4.9e+02 Score=24.02 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=26.3
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCe-e-CCeeeEEeecccCC
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSV-L-EGRLITVEKAKRSR 118 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~-l-~g~~i~V~~a~~~~ 118 (201)
..|-|. .|+++++|.+||. ++.. | .|..|.|.+.-++.
T Consensus 405 ~~GpA~-VF~see~a~~ai~--~g~i~i~~GdVvVIRyeGPkG 444 (577)
T PRK13016 405 HRGPAL-VFDSYPEMKAAID--DENLDVTPDHVMVLRNAGPQG 444 (577)
T ss_pred EEeeEE-EECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCC
Confidence 345554 5999999999986 5532 2 67778887766654
No 321
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=21.36 E-value=1.2e+02 Score=20.47 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=31.4
Q ss_pred cHHHHHHHHcCCCCeeEEE--------EeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 50 TNADLEKFFGGEGKVTECH--------LVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~--------i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
..-+++.+++.||.-..+. ++....-.--+|+.=|+|-.+++.+..++.+
T Consensus 32 d~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri 89 (91)
T PF13037_consen 32 DHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERI 89 (91)
T ss_pred CceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHh
Confidence 3446788888898644332 2211111223467779999999999888765
No 322
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=21.16 E-value=2.6e+02 Score=22.03 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=25.8
Q ss_pred eEEEeCCCCCCcHHH--------HHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 39 NLYVTGLSTRVTNAD--------LEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~--------L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
.=||-.||.+++.++ ++++|..+|-+..+.|..+.. ..-.|.|.|.+
T Consensus 69 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~---~NpHaHim~t~ 123 (216)
T PF03389_consen 69 REFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGP---RNPHAHIMFTT 123 (216)
T ss_dssp EEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETT---TEEEEEEEE--
T ss_pred eeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCC---CCCEEEEEeec
Confidence 446779999988654 344566778888888775422 23377777765
No 323
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=21.10 E-value=75 Score=19.96 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=10.8
Q ss_pred cHHHHHHHHcCCCCeeE
Q 028972 50 TNADLEKFFGGEGKVTE 66 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~ 66 (201)
|--||.+++.+||.+..
T Consensus 3 tlyDVqQLLK~fG~~IY 19 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIY 19 (62)
T ss_dssp SHHHHHHHHHTTS----
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 44688999999997654
No 324
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=21.03 E-value=2.2e+02 Score=17.51 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHHcCCC-CeeE----EEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 53 DLEKFFGGEG-KVTE----CHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 53 ~L~~~F~~~G-~i~~----v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.+..++.+|| ++.. ..++.. .....-..+|+|.+.+.|.+++.
T Consensus 10 ~~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 10 AVPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 3456677776 3321 223332 23334578999999999888753
No 325
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=20.98 E-value=2.1e+02 Score=17.30 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcC--HHHHHHHHHHhCCC
Q 028972 48 RVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMET--VEGADRCIKYLNRS 102 (201)
Q Consensus 48 ~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~--~~~a~~al~~l~g~ 102 (201)
.-.-.+|.++|.++| .|..+.+.... .....+..+..++ ..++.++|+.+.|.
T Consensus 10 ~G~l~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~i~v~~~~~~~~~~~l~~~~~v 65 (73)
T cd04902 10 PGVIGKVGTILGEAGINIAGMQVGRDE--PGGEALMVLSVDEPVPDEVLEELRALPGI 65 (73)
T ss_pred CCHHHHHHHHHHHcCcChhheEeeccC--CCCEEEEEEEeCCCCCHHHHHHHHcCCCc
Confidence 334566778888887 56555543321 1122333444433 23455555555543
No 326
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.93 E-value=1.9e+02 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=17.8
Q ss_pred CCCCCcHHHHHHHHcCC-CCeeEEEEee
Q 028972 45 LSTRVTNADLEKFFGGE-GKVTECHLVT 71 (201)
Q Consensus 45 Lp~~~t~~~L~~~F~~~-G~i~~v~i~~ 71 (201)
|...++.++|.++|.+| ..-..|.|+.
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~ 280 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVP 280 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 44558899999999874 4334455443
No 327
>PF09250 Prim-Pol: Bifunctional DNA primase/polymerase, N-terminal; InterPro: IPR015330 Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities []. ; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=20.79 E-value=2.9e+02 Score=19.99 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=22.1
Q ss_pred CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHH
Q 028972 49 VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVE 90 (201)
Q Consensus 49 ~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 90 (201)
++.++|..+|..+. -..|-|+. ...++..|.+...+
T Consensus 32 ~~~~~i~~~~~~~~-~~~igl~~-----~~~gl~viDiD~~~ 67 (163)
T PF09250_consen 32 TDPEQIERWWRRYP-GANIGLVL-----GPSGLVVIDIDNKD 67 (163)
T ss_dssp THHHHHHHHHH--T-T-EEEEES-----SGGGEEEEEES-HH
T ss_pred CCHHHHHHHHhhCC-CceEEEEe-----cCCceEEEECCCcc
Confidence 47888999998762 23444443 23479999998877
No 328
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=20.59 E-value=3.5e+02 Score=24.02 Aligned_cols=67 Identities=21% Similarity=0.170 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCC----CeeEEEEeeCCCCCCc--------ccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEG----KVTECHLVTDPRTRES--------CGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G----~i~~v~i~~~~~~~~~--------~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.+..|.+.+=-+-++.+.|++++.... .+.-+.+..+..+|.. .-.++||.++..++++.|..+|.-
T Consensus 96 ~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtG 174 (460)
T COG1207 96 DGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTG 174 (460)
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeee
Confidence 344666666556678888887776552 2222222222223221 226889999988888888776654
No 329
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.56 E-value=1.5e+02 Score=18.80 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=15.1
Q ss_pred EEEEEEcCHHHHHHHHHHh
Q 028972 81 FAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 81 ~afV~f~~~~~a~~al~~l 99 (201)
.+-|.|.+++.|+.+++.|
T Consensus 4 ~l~i~f~s~~~A~ii~~sL 22 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSL 22 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHh
Confidence 5678999999999988766
No 330
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.35 E-value=2.5e+02 Score=17.95 Aligned_cols=52 Identities=27% Similarity=0.229 Sum_probs=28.7
Q ss_pred cHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEc-CHHHHHHHHHHhCCC
Q 028972 50 TNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKYLNRS 102 (201)
Q Consensus 50 t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~-~~~~a~~al~~l~g~ 102 (201)
.-.++..+|+.+| .+..|.--..+. ....=.-||+++ ..+.++.||+.|...
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~-~~~~y~F~id~e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKR-RSSEFEIFVDCECDQRRLDELVQLLKRE 66 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCC-CCceEEEEEEEEcCHHHHHHHHHHHHHh
Confidence 3566778888886 445544322211 111124567775 345777888777543
Done!