Query 028972
Match_columns 201
No_of_seqs 312 out of 2675
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.7E-24 9.1E-29 149.4 12.1 82 35-116 17-98 (99)
2 3pgw_S U1-70K; protein-RNA com 99.9 1.3E-23 4.3E-28 181.2 18.5 89 34-122 99-187 (437)
3 2cq0_A Eukaryotic translation 99.9 3.1E-23 1.1E-27 144.5 13.5 90 32-121 10-99 (103)
4 2dnm_A SRP46 splicing factor; 99.9 2.5E-23 8.4E-28 145.1 12.1 92 30-121 6-97 (103)
5 3s8s_A Histone-lysine N-methyl 99.9 3.2E-23 1.1E-27 146.6 12.7 84 34-117 3-86 (110)
6 2dnz_A Probable RNA-binding pr 99.9 7.7E-23 2.6E-27 140.4 13.1 87 34-120 2-88 (95)
7 2dgs_A DAZ-associated protein 99.9 1.1E-22 3.8E-27 140.7 13.8 90 31-121 4-93 (99)
8 2cpz_A CUG triplet repeat RNA- 99.9 8.2E-23 2.8E-27 145.2 12.9 92 31-122 19-110 (115)
9 2dgo_A Cytotoxic granule-assoc 99.9 3.3E-22 1.1E-26 142.0 16.0 91 29-119 7-97 (115)
10 3ex7_B RNA-binding protein 8A; 99.9 3.5E-23 1.2E-27 149.4 11.0 91 29-119 14-104 (126)
11 1x5u_A Splicing factor 3B subu 99.9 1.3E-22 4.3E-27 141.9 13.5 91 29-119 7-97 (105)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.9 6.8E-23 2.3E-27 142.5 11.8 91 31-121 6-96 (102)
13 1p27_B RNA-binding protein 8A; 99.9 5.5E-23 1.9E-27 143.9 11.3 93 26-118 12-104 (106)
14 2d9p_A Polyadenylate-binding p 99.9 2.1E-22 7E-27 140.4 14.0 89 31-121 9-97 (103)
15 2cph_A RNA binding motif prote 99.9 1.8E-22 6.2E-27 141.4 13.6 91 30-120 8-100 (107)
16 1x4h_A RNA-binding protein 28; 99.9 2.4E-22 8.1E-27 141.8 14.2 91 30-120 8-104 (111)
17 1whw_A Hypothetical protein ri 99.9 1.6E-22 5.5E-27 139.8 13.0 87 34-120 5-91 (99)
18 2dnh_A Bruno-like 5, RNA bindi 99.9 2.9E-22 9.9E-27 140.0 14.3 89 33-122 11-102 (105)
19 2do4_A Squamous cell carcinoma 99.9 2.7E-22 9.3E-27 139.0 13.9 88 30-118 10-97 (100)
20 2cqd_A RNA-binding region cont 99.9 4.9E-22 1.7E-26 141.4 15.4 90 28-118 8-97 (116)
21 2cqc_A Arginine/serine-rich sp 99.9 1.8E-22 6.1E-27 138.5 12.6 87 30-116 8-94 (95)
22 2dng_A Eukaryotic translation 99.9 3E-22 1E-26 139.6 13.9 89 29-119 7-95 (103)
23 1x5s_A Cold-inducible RNA-bind 99.9 1.1E-22 3.8E-27 141.4 11.4 89 31-119 6-94 (102)
24 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.2E-22 4.2E-27 137.1 11.2 84 34-117 3-86 (87)
25 2e5h_A Zinc finger CCHC-type a 99.9 2.2E-22 7.6E-27 137.8 12.4 87 29-115 8-94 (94)
26 1x5t_A Splicing factor 3B subu 99.9 1.3E-22 4.3E-27 139.5 11.2 85 35-119 3-88 (96)
27 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.3E-22 8E-27 150.3 13.3 87 32-118 34-120 (156)
28 1wi8_A EIF-4B, eukaryotic tran 99.9 3.3E-22 1.1E-26 139.6 13.1 89 29-119 7-96 (104)
29 2cpe_A RNA-binding protein EWS 99.9 2.4E-22 8.3E-27 142.3 12.6 91 30-120 8-106 (113)
30 2la6_A RNA-binding protein FUS 99.9 2.7E-22 9.4E-27 138.8 12.5 88 28-115 4-99 (99)
31 3ulh_A THO complex subunit 4; 99.9 2.1E-22 7.2E-27 141.2 12.0 85 30-115 22-106 (107)
32 2lxi_A RNA-binding protein 10; 99.9 2.5E-23 8.7E-28 142.2 7.1 84 37-120 1-86 (91)
33 1oo0_B CG8781-PA, drosophila Y 99.9 1.5E-22 5.1E-27 142.7 11.2 93 26-118 15-107 (110)
34 1u6f_A Tcubp1, RNA-binding pro 99.9 2.9E-22 9.9E-27 146.9 13.1 88 33-120 38-125 (139)
35 2cq3_A RNA-binding protein 9; 99.9 9.8E-22 3.3E-26 136.9 15.0 91 29-121 7-97 (103)
36 3md1_A Nuclear and cytoplasmic 99.9 3.4E-22 1.2E-26 133.7 12.1 82 37-118 1-82 (83)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.1E-22 7.2E-27 135.3 10.8 82 34-115 4-85 (85)
38 2cpf_A RNA binding motif prote 99.9 2.9E-22 9.9E-27 138.3 11.8 86 35-120 3-91 (98)
39 2kxn_B Transformer-2 protein h 99.9 1.8E-22 6.2E-27 146.7 11.2 88 31-118 40-127 (129)
40 2fy1_A RNA-binding motif prote 99.9 4.9E-22 1.7E-26 141.7 13.2 85 33-118 3-87 (116)
41 2dgp_A Bruno-like 4, RNA bindi 99.9 2.5E-22 8.6E-27 140.6 11.2 90 30-119 6-98 (106)
42 1x4a_A Splicing factor, argini 99.9 1.3E-21 4.4E-26 137.7 14.8 87 30-119 15-101 (109)
43 2do0_A HnRNP M, heterogeneous 99.9 3.3E-21 1.1E-25 136.6 16.9 88 30-118 8-95 (114)
44 2lkz_A RNA-binding protein 5; 99.9 1.2E-22 4.2E-27 139.9 9.0 86 31-116 3-94 (95)
45 3p5t_L Cleavage and polyadenyl 99.9 5.8E-23 2E-27 139.9 7.2 83 38-120 2-86 (90)
46 2x1f_A MRNA 3'-END-processing 99.9 4.4E-22 1.5E-26 137.0 11.6 83 36-118 1-83 (96)
47 2dh8_A DAZ-associated protein 99.9 4.6E-22 1.6E-26 139.1 11.6 90 29-119 8-97 (105)
48 2jrs_A RNA-binding protein 39; 99.9 6.5E-22 2.2E-26 139.4 11.9 89 30-118 19-107 (108)
49 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.9E-21 6.4E-26 135.5 14.0 89 30-120 8-96 (103)
50 2dhg_A TRNA selenocysteine ass 99.9 9.4E-22 3.2E-26 137.2 12.0 86 33-119 5-92 (104)
51 1x4c_A Splicing factor, argini 99.9 2.7E-21 9.4E-26 136.0 14.4 81 31-118 9-94 (108)
52 2div_A TRNA selenocysteine ass 99.9 6E-22 2.1E-26 137.0 10.8 87 32-118 4-95 (99)
53 1rk8_A CG8781-PA, CG8781-PA pr 99.9 7.5E-22 2.6E-26 149.0 12.1 91 28-118 63-153 (165)
54 2ywk_A Putative RNA-binding pr 99.9 6.7E-22 2.3E-26 135.6 10.7 86 30-116 9-94 (95)
55 4f25_A Polyadenylate-binding p 99.9 7.9E-22 2.7E-26 140.4 11.3 82 36-119 4-85 (115)
56 3s7r_A Heterogeneous nuclear r 99.9 1.4E-21 5E-26 131.9 12.0 83 31-114 5-87 (87)
57 4a8x_A RNA-binding protein wit 99.9 8.7E-22 3E-26 133.0 10.5 83 36-118 3-86 (88)
58 2cq4_A RNA binding motif prote 99.9 4.5E-22 1.5E-26 141.2 9.4 83 35-118 23-105 (114)
59 2dgv_A HnRNP M, heterogeneous 99.9 1.5E-21 5.1E-26 133.1 11.6 86 31-118 2-87 (92)
60 2dgx_A KIAA0430 protein; RRM d 99.9 1.1E-21 3.9E-26 135.1 11.1 84 33-119 5-92 (96)
61 1wel_A RNA-binding protein 12; 99.9 3.1E-22 1E-26 144.3 8.5 84 33-117 21-104 (124)
62 2khc_A Testis-specific RNP-typ 99.9 7.9E-22 2.7E-26 140.7 10.0 84 32-115 35-118 (118)
63 1p1t_A Cleavage stimulation fa 99.9 2.9E-22 9.9E-27 139.7 7.5 88 31-118 2-89 (104)
64 2cqp_A RNA-binding protein 12; 99.9 9.3E-22 3.2E-26 135.8 10.0 85 33-117 11-95 (98)
65 1x4b_A Heterogeneous nuclear r 99.9 1.5E-21 5.1E-26 138.9 11.3 87 32-119 22-108 (116)
66 3ns6_A Eukaryotic translation 99.9 3E-22 1E-26 139.1 7.4 83 35-117 4-93 (100)
67 2cqg_A TDP-43, TAR DNA-binding 99.9 6.6E-21 2.3E-25 132.7 14.2 88 30-119 8-95 (103)
68 2dgu_A Heterogeneous nuclear r 99.9 5E-21 1.7E-25 133.4 13.6 84 30-121 4-87 (103)
69 2cpi_A CCR4-NOT transcription 99.9 3.2E-21 1.1E-25 136.3 11.8 87 32-118 10-102 (111)
70 3ucg_A Polyadenylate-binding p 99.9 3.3E-21 1.1E-25 130.5 11.2 82 36-118 5-86 (89)
71 2ek1_A RNA-binding protein 12; 99.9 7.8E-22 2.7E-26 135.3 8.0 83 34-116 12-94 (95)
72 2kt5_A RNA and export factor-b 99.9 8.1E-21 2.8E-25 136.7 13.7 89 33-122 31-119 (124)
73 2fc9_A NCL protein; structure 99.9 5.4E-21 1.8E-25 132.7 12.2 85 30-118 8-92 (101)
74 2m2b_A RNA-binding protein 10; 99.9 9.6E-22 3.3E-26 143.0 8.3 90 29-119 15-110 (131)
75 3n9u_C Cleavage and polyadenyl 99.9 2.5E-21 8.5E-26 145.1 10.6 82 36-117 54-137 (156)
76 2dgw_A Probable RNA-binding pr 99.9 9.6E-21 3.3E-25 129.0 12.6 83 33-118 6-88 (91)
77 2cq1_A PTB-like protein L; RRM 99.9 1.5E-20 5.3E-25 130.8 13.8 84 31-120 9-94 (101)
78 2fc8_A NCL protein; structure 99.9 1.2E-20 4E-25 131.1 13.1 84 32-118 10-93 (102)
79 1x4e_A RNA binding motif, sing 99.9 6.5E-22 2.2E-26 133.0 6.3 82 34-115 2-83 (85)
80 2rs2_A Musashi-1, RNA-binding 99.9 4.7E-21 1.6E-25 135.1 11.0 87 31-118 19-105 (109)
81 2lea_A Serine/arginine-rich sp 99.9 1.3E-21 4.4E-26 143.2 8.4 90 29-118 39-128 (135)
82 2err_A Ataxin-2-binding protei 99.9 3.8E-21 1.3E-25 135.6 10.3 88 28-117 20-107 (109)
83 2dnq_A RNA-binding protein 4B; 99.9 1.2E-20 4.1E-25 128.3 12.3 79 34-120 5-83 (90)
84 2cpx_A Hypothetical protein FL 99.9 9E-22 3.1E-26 139.7 7.0 92 31-122 19-110 (115)
85 1x5o_A RNA binding motif, sing 99.9 2.1E-20 7.1E-25 132.5 14.1 86 31-117 19-112 (114)
86 2kn4_A Immunoglobulin G-bindin 99.9 5.4E-21 1.8E-25 143.0 11.4 88 32-119 65-152 (158)
87 1sjq_A Polypyrimidine tract-bi 99.8 4.1E-21 1.4E-25 134.2 9.9 82 32-119 11-94 (105)
88 1wex_A Hypothetical protein (r 99.8 1.4E-20 4.8E-25 131.7 12.6 85 30-120 8-94 (104)
89 2jwn_A Embryonic polyadenylate 99.8 7.1E-21 2.4E-25 136.8 11.4 82 36-118 35-116 (124)
90 1s79_A Lupus LA protein; RRM, 99.8 2.4E-21 8.3E-26 135.4 8.6 81 34-116 8-88 (103)
91 3r27_A HnRNP L, heterogeneous 99.8 7E-21 2.4E-25 131.9 10.6 81 32-118 16-98 (100)
92 2dgt_A RNA-binding protein 30; 99.8 1.6E-20 5.4E-25 128.2 12.3 82 31-120 4-85 (92)
93 3beg_B Splicing factor, argini 99.8 3E-21 1E-25 137.4 9.0 73 34-113 13-85 (115)
94 2dis_A Unnamed protein product 99.8 7.5E-21 2.6E-25 133.7 10.7 85 35-119 6-94 (109)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.5E-21 5.3E-26 135.4 7.1 88 29-118 11-99 (100)
96 1wez_A HnRNP H', FTP-3, hetero 99.8 8.3E-21 2.8E-25 132.4 10.7 84 32-118 10-93 (102)
97 1why_A Hypothetical protein ri 99.8 2.3E-20 7.7E-25 128.6 12.8 81 32-118 12-94 (97)
98 1x4d_A Matrin 3; structural ge 99.8 7.3E-21 2.5E-25 132.6 10.3 79 34-118 12-93 (102)
99 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.1E-20 3.8E-25 138.3 11.8 84 31-114 57-140 (140)
100 2mss_A Protein (musashi1); RNA 99.8 2.3E-21 7.9E-26 127.3 7.2 75 39-114 1-75 (75)
101 2f3j_A RNA and export factor b 99.8 1.8E-20 6.2E-25 143.1 13.1 85 33-118 84-168 (177)
102 2cpj_A Non-POU domain-containi 99.8 3.2E-20 1.1E-24 128.3 12.6 83 30-118 8-90 (99)
103 2nlw_A Eukaryotic translation 99.8 9.8E-21 3.3E-25 132.5 9.8 85 31-117 9-100 (105)
104 1wg5_A Heterogeneous nuclear r 99.8 2E-20 7E-25 130.7 11.1 84 33-118 11-95 (104)
105 2cpy_A RNA-binding protein 12; 99.8 7.4E-21 2.5E-25 135.1 9.0 85 32-118 10-95 (114)
106 2ad9_A Polypyrimidine tract-bi 99.8 1.8E-20 6.2E-25 133.9 11.0 83 32-120 26-110 (119)
107 2ytc_A PRE-mRNA-splicing facto 99.8 2.2E-20 7.6E-25 125.4 10.9 81 29-115 4-85 (85)
108 2dnp_A RNA-binding protein 14; 99.8 3.1E-20 1.1E-24 126.2 11.4 80 32-119 4-83 (90)
109 1wf1_A RNA-binding protein RAL 99.8 2.7E-20 9.1E-25 131.2 11.4 79 32-118 22-101 (110)
110 2db1_A Heterogeneous nuclear r 99.8 9.7E-21 3.3E-25 135.4 9.0 84 32-117 12-98 (118)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5E-21 1.7E-25 126.2 6.9 76 38-114 1-76 (77)
112 1x4g_A Nucleolysin TIAR; struc 99.8 3.7E-20 1.3E-24 130.3 11.7 81 33-119 21-101 (109)
113 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-20 6.3E-25 126.0 9.5 75 35-115 5-79 (89)
114 2a3j_A U1 small nuclear ribonu 99.8 1.8E-20 6.2E-25 135.7 10.1 85 31-118 23-111 (127)
115 2jvo_A Nucleolar protein 3; nu 99.8 2.7E-20 9.1E-25 131.1 10.6 80 31-118 25-104 (108)
116 1fj7_A Nucleolin RBD1, protein 99.8 2E-21 6.8E-26 134.9 4.7 85 32-118 12-96 (101)
117 3q2s_C Cleavage and polyadenyl 99.8 9.6E-21 3.3E-25 150.3 9.2 82 36-117 67-150 (229)
118 2e5j_A Methenyltetrahydrofolat 99.8 3.5E-20 1.2E-24 127.7 10.9 82 32-118 14-95 (97)
119 2lcw_A RNA-binding protein FUS 99.7 2.5E-22 8.6E-27 143.0 0.0 88 32-119 2-97 (116)
120 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-20 3.7E-25 133.7 8.4 81 33-117 24-105 (111)
121 2dnn_A RNA-binding protein 12; 99.8 1.7E-20 5.7E-25 132.4 9.1 82 33-117 12-93 (109)
122 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-19 6.3E-24 124.5 14.2 83 28-118 6-90 (99)
123 2ki2_A SS-DNA binding protein 99.8 2.5E-21 8.6E-26 131.5 4.1 81 38-119 2-82 (90)
124 2kvi_A Nuclear polyadenylated 99.8 2.6E-20 8.8E-25 128.2 9.0 78 33-118 6-84 (96)
125 2hgl_A HNRPF protein, heteroge 99.8 1.5E-20 5.1E-25 137.6 8.1 83 33-117 40-125 (136)
126 1nu4_A U1A RNA binding domain; 99.8 1.7E-20 5.9E-25 129.0 8.0 83 33-118 4-90 (97)
127 2cqh_A IGF-II mRNA-binding pro 99.8 4.6E-20 1.6E-24 126.1 9.7 79 34-119 5-85 (93)
128 2la4_A Nuclear and cytoplasmic 99.8 4.3E-20 1.5E-24 128.1 9.6 78 34-117 24-101 (101)
129 1fjc_A Nucleolin RBD2, protein 99.8 2.9E-20 1E-24 127.7 8.4 82 32-118 11-92 (96)
130 2lmi_A GRSF-1, G-rich sequence 99.8 1.1E-20 3.9E-25 132.7 6.4 85 31-117 5-92 (107)
131 1x5p_A Negative elongation fac 99.8 3.9E-19 1.3E-23 122.4 14.0 81 32-120 10-90 (97)
132 2e5g_A U6 snRNA-specific termi 99.8 1.7E-19 6E-24 123.5 12.1 79 35-119 6-84 (94)
133 2krb_A Eukaryotic translation 99.8 2.1E-20 7.2E-25 124.7 7.0 73 37-111 1-80 (81)
134 2hvz_A Splicing factor, argini 99.8 4.8E-20 1.6E-24 127.8 9.0 76 38-118 1-76 (101)
135 2xnq_A Nuclear polyadenylated 99.8 1.5E-19 5.2E-24 124.7 11.4 78 32-117 17-95 (97)
136 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-19 3.6E-24 129.0 10.8 82 34-118 5-86 (115)
137 1x4f_A Matrin 3; structural ge 99.8 3.4E-20 1.2E-24 131.1 8.0 81 34-120 22-105 (112)
138 1iqt_A AUF1, heterogeneous nuc 99.8 1.2E-20 4.2E-25 123.7 5.1 75 39-114 1-75 (75)
139 2hgn_A Heterogeneous nuclear r 99.8 1.3E-20 4.6E-25 138.3 5.2 85 31-118 40-124 (139)
140 4f02_A Polyadenylate-binding p 99.8 2E-19 6.7E-24 140.8 12.1 84 34-117 12-95 (213)
141 2xs2_A Deleted in azoospermia- 99.8 3.4E-20 1.2E-24 128.8 6.7 85 31-118 3-87 (102)
142 3md3_A Nuclear and cytoplasmic 99.8 3.8E-19 1.3E-23 132.6 12.8 85 32-116 82-166 (166)
143 2e44_A Insulin-like growth fac 99.8 1.8E-19 6.2E-24 123.7 9.6 81 34-118 12-93 (96)
144 2cq2_A Hypothetical protein LO 99.8 1.6E-19 5.5E-24 127.9 9.2 83 34-122 22-111 (114)
145 3egn_A RNA-binding protein 40; 99.8 4.1E-20 1.4E-24 136.1 5.9 85 33-120 41-133 (143)
146 1l3k_A Heterogeneous nuclear r 99.8 3.1E-19 1.1E-23 137.0 11.0 91 27-118 3-93 (196)
147 2qfj_A FBP-interacting repress 99.8 6E-19 2.1E-23 137.3 12.8 87 35-121 123-209 (216)
148 1whx_A Hypothetical protein ri 99.8 2.8E-19 9.5E-24 126.4 9.8 77 36-118 9-85 (111)
149 2i2y_A Fusion protein consists 99.8 2.8E-19 9.5E-24 132.7 10.0 84 30-118 66-149 (150)
150 2hgm_A HNRPF protein, heteroge 99.8 1.1E-19 3.9E-24 131.2 7.4 82 33-117 38-121 (126)
151 1fxl_A Paraneoplastic encephal 99.8 8.6E-19 2.9E-23 130.8 12.4 83 36-118 1-83 (167)
152 1b7f_A Protein (SXL-lethal pro 99.8 6.5E-19 2.2E-23 131.9 11.6 83 36-118 2-84 (168)
153 2e5i_A Heterogeneous nuclear r 99.8 2.3E-18 7.8E-23 123.9 13.4 78 35-118 21-103 (124)
154 1l3k_A Heterogeneous nuclear r 99.8 9.5E-19 3.2E-23 134.2 12.1 89 31-120 98-186 (196)
155 2dha_A FLJ20171 protein; RRM d 99.8 1.3E-19 4.5E-24 130.4 6.5 81 35-117 21-105 (123)
156 1wg1_A KIAA1579 protein, homol 99.8 6.5E-19 2.2E-23 119.2 9.4 76 36-118 4-79 (88)
157 2yh0_A Splicing factor U2AF 65 99.8 1.6E-18 5.3E-23 133.2 12.4 85 34-118 111-195 (198)
158 2g4b_A Splicing factor U2AF 65 99.8 1.5E-18 5.2E-23 130.4 12.1 81 35-115 92-172 (172)
159 2diu_A KIAA0430 protein; struc 99.8 2.3E-18 7.9E-23 116.9 10.9 76 35-120 6-87 (96)
160 2bz2_A Negative elongation fac 99.8 1.8E-18 6.1E-23 124.1 10.2 80 33-120 35-114 (121)
161 3d2w_A TAR DNA-binding protein 99.8 1.9E-18 6.6E-23 117.4 9.7 78 32-118 6-85 (89)
162 1sjr_A Polypyrimidine tract-bi 99.8 1.4E-18 4.7E-23 130.3 9.6 79 36-118 45-125 (164)
163 3zzy_A Polypyrimidine tract-bi 99.8 3E-18 1E-22 124.0 10.9 76 38-118 29-107 (130)
164 1b7f_A Protein (SXL-lethal pro 99.8 6.5E-18 2.2E-22 126.4 12.4 81 34-114 86-168 (168)
165 4f02_A Polyadenylate-binding p 99.8 2.8E-18 9.6E-23 134.2 10.5 81 36-118 102-182 (213)
166 2dnl_A Cytoplasmic polyadenyla 99.8 5.5E-18 1.9E-22 120.1 11.0 79 35-116 6-87 (114)
167 2j8a_A Histone-lysine N-methyl 99.8 1.9E-18 6.5E-23 123.8 8.4 78 38-115 3-94 (136)
168 2cjk_A Nuclear polyadenylated 99.8 1.2E-18 4.1E-23 130.4 7.6 81 36-117 86-166 (167)
169 1wf0_A TDP-43, TAR DNA-binding 99.8 1.7E-18 5.9E-23 117.0 7.4 78 35-119 3-80 (88)
170 3tyt_A Heterogeneous nuclear r 99.8 5.9E-18 2E-22 132.0 11.0 79 35-118 2-81 (205)
171 3md3_A Nuclear and cytoplasmic 99.7 7.9E-18 2.7E-22 125.4 11.1 80 38-118 1-80 (166)
172 2qfj_A FBP-interacting repress 99.7 5.5E-18 1.9E-22 131.9 10.2 84 34-117 25-108 (216)
173 1fxl_A Paraneoplastic encephal 99.7 1E-17 3.5E-22 124.9 11.1 81 34-114 85-167 (167)
174 2pe8_A Splicing factor 45; RRM 99.7 1.5E-17 5.1E-22 116.4 11.1 83 34-116 5-93 (105)
175 2hzc_A Splicing factor U2AF 65 99.7 6.3E-18 2.2E-22 113.7 8.1 73 34-113 3-86 (87)
176 3nmr_A Cugbp ELAV-like family 99.7 1.5E-17 5.2E-22 125.0 10.5 81 34-115 92-175 (175)
177 1fje_B Nucleolin RBD12, protei 99.7 1.4E-17 4.9E-22 125.6 10.2 80 33-117 95-174 (175)
178 3nmr_A Cugbp ELAV-like family 99.7 2.8E-17 9.6E-22 123.5 10.5 83 36-118 2-89 (175)
179 3pgw_A U1-A; protein-RNA compl 99.7 3.3E-17 1.1E-21 132.9 11.6 84 32-118 4-91 (282)
180 2dit_A HIV TAT specific factor 99.7 1.9E-16 6.5E-21 111.9 13.5 83 32-118 10-103 (112)
181 2voo_A Lupus LA protein; RNA-b 99.7 6E-17 2E-21 125.2 11.6 79 37-117 109-187 (193)
182 2cjk_A Nuclear polyadenylated 99.7 1.9E-17 6.6E-22 123.8 8.4 80 36-117 2-81 (167)
183 3u1l_A PRE-mRNA-splicing facto 99.7 3.3E-17 1.1E-21 130.2 9.3 79 34-118 131-230 (240)
184 2ghp_A U4/U6 snRNA-associated 99.7 3.9E-17 1.3E-21 133.1 9.6 84 33-117 206-291 (292)
185 2adc_A Polypyrimidine tract-bi 99.7 5.7E-17 2E-21 128.1 10.0 81 33-118 30-111 (229)
186 3smz_A Protein raver-1, ribonu 99.7 1.5E-16 5.2E-21 129.1 12.0 85 33-118 180-265 (284)
187 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 4.7E-21 129.2 11.4 79 33-116 203-282 (282)
188 3smz_A Protein raver-1, ribonu 99.7 2.2E-16 7.5E-21 128.1 12.1 84 35-118 93-176 (284)
189 1qm9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.6E-21 121.8 8.7 77 37-118 3-80 (198)
190 3tyt_A Heterogeneous nuclear r 99.7 1.2E-16 4.2E-21 124.5 7.6 79 34-114 120-204 (205)
191 3v4m_A Splicing factor U2AF 65 99.7 4.1E-16 1.4E-20 109.0 9.4 82 35-116 3-96 (105)
192 1fje_B Nucleolin RBD12, protei 99.7 4.3E-17 1.5E-21 123.0 4.4 84 33-118 9-92 (175)
193 1qm9_A Polypyrimidine tract-bi 99.7 2.8E-16 9.5E-21 121.0 8.8 79 34-117 117-197 (198)
194 3sde_A Paraspeckle component 1 99.7 4.8E-16 1.6E-20 125.1 10.1 79 32-116 17-95 (261)
195 2adc_A Polypyrimidine tract-bi 99.6 8.9E-16 3E-20 121.2 11.1 79 34-117 148-228 (229)
196 3ue2_A Poly(U)-binding-splicin 99.6 1.3E-15 4.4E-20 108.6 10.1 82 35-116 18-108 (118)
197 2d9o_A DNAJ (HSP40) homolog, s 99.6 5.1E-15 1.7E-19 102.5 12.2 78 37-121 10-94 (100)
198 3sde_A Paraspeckle component 1 99.6 1.4E-15 4.8E-20 122.4 10.9 83 36-119 95-181 (261)
199 1jmt_A Splicing factor U2AF 35 99.6 2.1E-16 7.1E-21 110.4 5.2 72 42-114 20-103 (104)
200 2ghp_A U4/U6 snRNA-associated 99.6 1.1E-15 3.9E-20 124.3 9.4 82 36-118 116-198 (292)
201 2g4b_A Splicing factor U2AF 65 99.6 2.7E-15 9.3E-20 112.5 9.3 76 36-118 3-89 (172)
202 2yh0_A Splicing factor U2AF 65 99.6 4.8E-15 1.6E-19 113.6 9.5 76 36-118 3-89 (198)
203 3tht_A Alkylated DNA repair pr 99.6 5.8E-15 2E-19 123.1 9.6 76 34-115 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 5.8E-14 2E-18 99.4 10.3 79 34-116 4-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 1.7E-13 5.9E-18 97.5 10.2 81 29-115 10-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1E-12 3.6E-17 88.3 7.9 75 35-118 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 2.2E-11 7.6E-16 82.2 5.6 73 34-115 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 2E-10 6.8E-15 89.9 11.4 68 49-116 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 99.0 5.1E-09 1.7E-13 72.2 9.2 73 36-114 20-97 (117)
210 1wey_A Calcipressin 1; structu 98.5 6.4E-07 2.2E-11 61.3 7.5 75 37-117 5-84 (104)
211 1uw4_A UPF3X; nonsense mediate 98.4 3.4E-06 1.2E-10 56.7 10.0 80 38-117 2-88 (91)
212 2dhx_A Poly (ADP-ribose) polym 98.3 7.2E-06 2.5E-10 55.9 10.3 74 36-118 7-85 (104)
213 1wwh_A Nucleoporin 35, nucleop 98.3 4.6E-06 1.6E-10 58.6 8.6 75 32-114 19-94 (119)
214 1whv_A Poly(A)-specific ribonu 98.1 1.7E-05 5.7E-10 53.5 7.5 55 37-100 16-70 (100)
215 2l08_A Regulator of nonsense t 98.0 1.7E-05 5.9E-10 53.6 6.5 81 36-116 8-95 (97)
216 3ctr_A Poly(A)-specific ribonu 97.9 1.8E-05 6.1E-10 53.5 5.4 54 38-100 7-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.8 2.2E-05 7.7E-10 55.8 5.1 78 36-115 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.0 0.0004 1.4E-08 59.7 3.2 55 37-97 53-107 (464)
219 2i2y_A Fusion protein consists 96.9 0.00049 1.7E-08 49.9 3.1 42 75-117 9-51 (150)
220 2kn4_A Immunoglobulin G-bindin 96.9 0.00093 3.2E-08 48.7 4.1 36 66-103 2-37 (158)
221 3d45_A Poly(A)-specific ribonu 94.7 0.079 2.7E-06 46.1 7.4 57 37-102 440-496 (507)
222 4eyt_A Telomerase associated p 93.7 0.63 2.2E-05 30.6 8.3 72 33-112 8-86 (129)
223 2g0c_A ATP-dependent RNA helic 93.0 0.27 9.3E-06 31.0 5.8 68 39-115 2-75 (76)
224 4e8u_A Putative uncharacterize 83.7 5.7 0.0002 29.3 7.7 57 38-97 13-81 (172)
225 3pgw_S U1-70K; protein-RNA com 77.8 9.1 0.00031 32.4 8.1 10 88-97 115-124 (437)
226 3fry_A Probable copper-exporti 75.8 8.1 0.00028 23.2 5.6 55 38-99 7-61 (73)
227 3lpe_A Putative transcription 70.5 9.8 0.00034 24.7 5.2 36 63-103 39-74 (92)
228 3j21_T 50S ribosomal protein L 66.6 17 0.00058 23.5 5.6 56 39-97 24-81 (86)
229 1xn9_A 30S ribosomal protein S 63.1 18 0.00062 24.1 5.3 49 47-96 28-81 (101)
230 1ywx_A 30S ribosomal protein S 62.0 20 0.00067 24.0 5.4 47 47-94 28-79 (102)
231 3dxs_X Copper-transporting ATP 61.8 22 0.00075 20.9 6.7 55 39-99 5-63 (74)
232 2v94_A RPS24, 30S ribosomal pr 61.0 22 0.00075 24.0 5.5 47 48-95 38-89 (107)
233 2lfv_A Protein DAMX; cell divi 65.1 1.8 6E-05 29.4 0.0 67 36-107 24-92 (106)
234 2cu1_A Mitogen-activated prote 60.4 23 0.00077 23.6 5.3 67 42-117 21-88 (103)
235 4bby_A Alkyldihydroxyacetoneph 59.9 7.5 0.00026 34.7 3.9 55 44-99 350-408 (658)
236 4a4j_A Pacszia, cation-transpo 59.9 23 0.00078 20.5 5.2 54 39-98 5-61 (69)
237 1kvi_A Copper-transporting ATP 57.9 26 0.00091 20.6 6.4 59 35-99 7-69 (79)
238 3ced_A Methionine import ATP-b 53.6 22 0.00075 23.2 4.5 63 39-101 22-87 (98)
239 4a17_R RPL23A, 60S ribosomal p 50.8 27 0.00093 25.0 4.8 56 39-97 88-145 (150)
240 1yg0_A COP associated protein; 50.4 31 0.0011 19.2 6.4 55 39-99 4-61 (66)
241 3u5e_X 60S ribosomal protein L 50.2 28 0.00096 24.7 4.8 55 40-97 81-137 (142)
242 1q8l_A Copper-transporting ATP 48.5 42 0.0015 20.2 7.2 57 37-99 10-70 (84)
243 2g9o_A Copper-transporting ATP 48.4 46 0.0016 20.6 5.9 55 39-99 6-64 (90)
244 2xzm_P RPS24E; ribosome, trans 48.3 37 0.0013 24.3 5.2 48 47-95 31-83 (149)
245 2w7a_A LINE-1 ORF1P; RNA-bindi 46.2 44 0.0015 22.2 5.0 74 38-112 4-98 (100)
246 1vq8_S 50S ribosomal protein L 45.8 31 0.0011 22.2 4.1 53 40-95 24-78 (85)
247 3uzu_A Ribosomal RNA small sub 45.5 8.1 0.00028 30.5 1.6 33 38-70 115-147 (279)
248 3u5c_Y RP50, 40S ribosomal pro 45.3 76 0.0026 22.2 7.8 46 48-94 34-84 (135)
249 3lo3_A Uncharacterized conserv 45.2 40 0.0014 21.8 4.8 42 54-97 26-71 (94)
250 2lsl_A Telomerase associated p 50.4 4.7 0.00016 26.7 0.0 23 79-101 77-99 (137)
251 2g1d_A 30S ribosomal protein S 44.4 20 0.00068 23.8 3.1 47 48-95 30-81 (98)
252 2xmw_A PACS-N, cation-transpor 43.3 43 0.0015 18.8 7.1 55 39-99 6-63 (71)
253 2l3m_A Copper-ION-binding prot 43.3 44 0.0015 18.9 6.8 55 39-99 8-66 (71)
254 3fut_A Dimethyladenosine trans 43.1 16 0.00053 28.8 2.9 32 37-69 110-141 (271)
255 2zkr_s 60S ribosomal protein L 42.3 39 0.0013 24.3 4.6 54 40-96 95-150 (156)
256 3swz_A Steroid 17-alpha-hydrox 41.5 28 0.00097 28.9 4.5 59 39-107 16-78 (494)
257 3pm9_A Putative oxidoreductase 41.4 40 0.0014 28.7 5.4 54 45-99 194-251 (476)
258 2rf4_B DNA-directed RNA polyme 41.3 15 0.00053 23.6 2.1 34 28-61 10-43 (87)
259 1cpz_A Protein (COPZ); copper 40.9 46 0.0016 18.5 8.0 54 39-98 3-60 (68)
260 2qrr_A Methionine import ATP-b 40.9 71 0.0024 20.6 5.6 62 39-100 25-88 (101)
261 3iz5_X 60S ribosomal protein L 40.6 27 0.00093 25.1 3.5 54 40-96 91-146 (152)
262 1aw0_A Menkes copper-transport 40.2 50 0.0017 18.6 5.5 55 39-99 6-64 (72)
263 1vd2_A Protein kinase C, IOTA 39.9 50 0.0017 21.3 4.5 53 40-99 17-74 (89)
264 2kt2_A Mercuric reductase; nme 39.4 51 0.0017 18.5 6.7 54 39-98 3-59 (69)
265 3e6i_A CYPIIE1, P450-J, cytoch 39.4 30 0.001 28.4 4.3 50 39-97 18-70 (476)
266 3r8s_T 50S ribosomal protein L 39.4 70 0.0024 20.8 5.1 32 39-70 28-61 (93)
267 2ew9_A Copper-transporting ATP 39.1 76 0.0026 21.2 5.8 56 38-99 82-141 (149)
268 1y3j_A Copper-transporting ATP 39.1 57 0.0019 18.9 5.3 55 39-99 6-64 (77)
269 1osd_A MERP, hypothetical prot 38.7 53 0.0018 18.5 7.4 55 39-99 6-64 (72)
270 2exu_A Transcription initiatio 38.4 47 0.0016 25.0 4.7 27 78-104 148-174 (200)
271 2ofg_X Zinc-transporting ATPas 38.3 80 0.0027 20.4 7.5 55 39-99 11-69 (111)
272 1p6t_A Potential copper-transp 38.1 90 0.0031 20.9 7.1 55 39-99 77-135 (151)
273 1x60_A Sporulation-specific N- 37.4 33 0.0011 21.0 3.3 66 34-104 6-71 (79)
274 1wvf_A 4-cresol dehydrogenase 37.1 26 0.00087 30.2 3.5 43 53-96 217-261 (520)
275 1i4w_A Mitochondrial replicati 36.5 26 0.00088 28.7 3.3 22 39-60 144-165 (353)
276 3ts2_A Protein LIN-28 homolog 36.3 4.4 0.00015 29.0 -1.2 28 52-87 2-29 (148)
277 2yko_A LINE-1 ORF1P; RNA-bindi 36.2 90 0.0031 24.0 6.0 33 81-113 113-148 (233)
278 3tqs_A Ribosomal RNA small sub 35.8 10 0.00035 29.5 0.7 32 39-70 98-129 (255)
279 3cjk_B Copper-transporting ATP 35.6 63 0.0022 18.5 7.0 55 39-99 5-63 (75)
280 3bde_A MLL5499 protein; stress 35.3 1E+02 0.0035 20.8 6.7 55 40-94 24-86 (120)
281 3bgu_A Ferredoxin-like protein 35.1 99 0.0034 20.6 6.4 54 40-94 25-88 (116)
282 1qyr_A KSGA, high level kasuga 34.4 36 0.0012 26.2 3.7 29 38-66 91-119 (252)
283 1fvq_A Copper-transporting ATP 34.0 65 0.0022 18.1 5.6 55 39-99 5-62 (72)
284 2uuu_A Alkyldihydroxyacetoneph 34.0 30 0.001 30.3 3.5 54 46-100 282-339 (584)
285 3ftd_A Dimethyladenosine trans 34.0 21 0.00072 27.5 2.3 30 38-67 96-125 (249)
286 3bb5_A Stress responsive alpha 33.8 1.1E+02 0.0037 20.6 7.8 57 39-95 23-90 (121)
287 1x8d_A Hypothetical protein YI 32.7 91 0.0031 20.6 5.0 34 52-88 27-60 (104)
288 3h7h_B Transcription elongatio 32.4 30 0.001 23.2 2.5 25 78-102 50-74 (106)
289 2npt_B Mitogen-activated prote 32.3 96 0.0033 20.3 4.8 52 43-102 34-86 (100)
290 2crl_A Copper chaperone for su 32.1 98 0.0033 19.6 5.7 54 39-99 22-76 (98)
291 2cfx_A HTH-type transcriptiona 32.0 1.2E+02 0.0041 20.6 8.0 53 44-101 72-124 (144)
292 1mwy_A ZNTA; open-faced beta-s 31.7 75 0.0026 18.1 8.3 55 39-99 6-62 (73)
293 2lea_A Serine/arginine-rich sp 31.6 9.9 0.00034 26.3 0.0 26 81-106 6-31 (135)
294 2kyz_A Heavy metal binding pro 31.5 41 0.0014 19.0 2.9 52 39-97 4-55 (67)
295 1yjr_A Copper-transporting ATP 31.3 75 0.0026 18.0 7.9 56 38-99 6-65 (75)
296 2i9x_A Putative septation prot 31.1 74 0.0025 20.4 4.2 26 63-88 5-30 (87)
297 3pm0_A Cypib1, cytochrome P450 30.1 64 0.0022 26.7 4.8 49 40-97 18-68 (507)
298 2d8m_A DNA-repair protein XRCC 29.7 51 0.0018 22.4 3.5 30 34-64 22-51 (129)
299 2qif_A Copper chaperone COPZ; 28.5 77 0.0026 17.3 7.0 55 39-99 5-63 (69)
300 3mfb_A Uncharacterized protein 28.3 1E+02 0.0035 22.2 4.9 37 49-85 3-42 (157)
301 2qsw_A Methionine import ATP-b 28.3 74 0.0025 20.5 4.0 62 39-100 25-88 (100)
302 2e7g_A Putative ribosome-bindi 28.0 1.1E+02 0.0039 20.9 5.0 35 61-99 43-78 (129)
303 2e1c_A Putative HTH-type trans 27.8 1.6E+02 0.0056 20.8 6.7 52 44-100 94-145 (171)
304 3tbg_A Cytochrome P450 2D6; mo 27.4 38 0.0013 27.8 2.9 48 41-97 20-70 (479)
305 3dhx_A Methionine import ATP-b 26.3 74 0.0025 20.9 3.7 56 47-102 31-88 (106)
306 2e5p_A Protein PHF1, PHD finge 26.1 25 0.00085 21.5 1.1 9 80-88 38-46 (68)
307 2cyy_A Putative HTH-type trans 26.1 1.6E+02 0.0055 20.1 6.7 53 44-101 74-126 (151)
308 2c60_A Human mitogen-activated 26.1 84 0.0029 20.9 3.7 51 44-102 46-97 (111)
309 2cs4_A Protein C12ORF2; GTP bi 26.0 26 0.0009 23.0 1.3 23 41-63 20-43 (95)
310 1opz_A Potential copper-transp 26.0 95 0.0032 17.5 8.0 56 38-99 8-67 (76)
311 2jrh_A Mitogen-activated prote 25.9 1.3E+02 0.0045 19.4 4.5 64 44-116 19-83 (94)
312 2ia9_A Putative septation prot 25.8 1E+02 0.0034 20.4 4.2 26 63-88 5-30 (100)
313 2ko1_A CTR148A, GTP pyrophosph 25.3 1.2E+02 0.004 18.3 7.9 52 49-102 17-69 (88)
314 2okq_A Hypothetical protein YB 25.3 1.8E+02 0.0061 20.4 6.7 46 54-99 50-110 (141)
315 2qyc_A Ferredoxin-like protein 25.2 1.4E+02 0.0047 19.1 6.7 54 40-94 8-71 (103)
316 2i9z_A Putative septation prot 24.8 1.1E+02 0.0037 20.4 4.2 26 63-88 5-30 (105)
317 2ns6_A Mobilization protein A; 24.8 1.9E+02 0.0066 21.1 6.1 48 38-88 71-126 (185)
318 3d53_A Inorganic pyrophosphata 24.5 74 0.0025 23.3 3.6 38 51-99 132-169 (173)
319 1i1g_A Transcriptional regulat 24.0 1.4E+02 0.0049 19.9 5.1 48 50-101 76-124 (141)
320 3fjv_A Uncharacterized novel p 23.7 61 0.0021 24.2 3.1 47 50-103 66-112 (194)
321 4dqz_A Methyltransferase type 23.6 50 0.0017 25.1 2.6 59 39-98 119-181 (230)
322 3bn7_A Ferredoxin-like protein 23.2 1.7E+02 0.0059 19.5 6.0 54 40-93 24-90 (120)
323 2ldi_A Zinc-transporting ATPas 23.1 1E+02 0.0035 16.9 6.5 54 39-98 6-63 (71)
324 2k2p_A Uncharacterized protein 22.8 92 0.0031 19.1 3.5 55 39-99 25-80 (85)
325 1e8g_A Vanillyl-alcohol oxidas 22.8 39 0.0013 29.4 2.2 43 54-97 250-294 (560)
326 2zjr_Q 50S ribosomal protein L 22.5 70 0.0024 20.9 2.9 31 41-71 25-57 (95)
327 1jww_A Potential copper-transp 22.4 1.2E+02 0.0041 17.4 5.1 55 39-99 6-64 (80)
328 3iz6_U 40S ribosomal protein S 22.3 19 0.00064 25.5 0.0 46 48-94 39-90 (138)
329 3p8b_B Transcription antitermi 22.2 59 0.002 22.8 2.7 35 64-103 33-67 (152)
330 2m0o_A PHD finger protein 1; t 22.1 33 0.0011 21.6 1.1 10 80-89 55-64 (79)
331 4hhu_A OR280; engineered prote 21.8 2E+02 0.0067 19.7 5.2 70 39-113 44-128 (170)
332 2cg4_A Regulatory protein ASNC 21.6 2E+02 0.0068 19.6 8.2 53 44-100 75-128 (152)
333 2rop_A Copper-transporting ATP 21.5 2.3E+02 0.0077 20.2 7.6 56 38-99 124-183 (202)
334 3my7_A Alcohol dehydrogenase/a 21.4 94 0.0032 26.1 4.2 10 59-68 336-345 (452)
335 1qez_A Ppase, S-ppase, protein 21.1 94 0.0032 22.7 3.6 39 51-100 128-166 (173)
336 3n9y_A Cholesterol SIDE-chain 21.1 1.2E+02 0.0039 24.9 4.7 38 51-97 35-72 (487)
337 1q4r_A Protein AT3G17210; cent 20.7 1.8E+02 0.0063 18.9 6.6 56 39-94 13-79 (112)
338 2gu3_A YPMB protein; APC1927, 20.7 1.2E+02 0.0039 21.1 3.9 47 42-88 68-127 (136)
339 3iwl_A Copper transport protei 20.3 1.3E+02 0.0045 17.1 5.4 52 39-98 5-57 (68)
340 2nn4_A Hypothetical protein YQ 20.2 37 0.0013 21.1 1.0 17 50-66 4-20 (72)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=149.40 Aligned_cols=82 Identities=32% Similarity=0.466 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+++|||+|||.++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 028972 115 KR 116 (201)
Q Consensus 115 ~~ 116 (201)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=1.3e-23 Score=181.20 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=82.6
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||+.||+++|.++|.+||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|||+.|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 028972 114 AKRSRGRTP 122 (201)
Q Consensus 114 a~~~~~~~~ 122 (201)
|..+.....
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 997765443
No 3
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3.1e-23 Score=144.54 Aligned_cols=90 Identities=29% Similarity=0.369 Sum_probs=83.8
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccCCCCC
Q 028972 112 EKAKRSRGRT 121 (201)
Q Consensus 112 ~~a~~~~~~~ 121 (201)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998876443
No 4
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=145.08 Aligned_cols=92 Identities=25% Similarity=0.368 Sum_probs=84.9
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 44556778899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEeecccCCCCC
Q 028972 110 TVEKAKRSRGRT 121 (201)
Q Consensus 110 ~V~~a~~~~~~~ 121 (201)
.|.+|+......
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 999998875443
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=146.62 Aligned_cols=84 Identities=24% Similarity=0.363 Sum_probs=80.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
+++..+|||+|||+++++++|+++|++||+|..|.|+.++.++.++|||||+|++.++|++||+.|||+.|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
|...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.7e-23 Score=140.36 Aligned_cols=87 Identities=29% Similarity=0.399 Sum_probs=81.8
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 028972 114 AKRSRGR 120 (201)
Q Consensus 114 a~~~~~~ 120 (201)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887643
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=140.73 Aligned_cols=90 Identities=21% Similarity=0.475 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||++.|+|+.|.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445677899999999999999999999999999999999998899999999999999999999999 999999999999
Q ss_pred EeecccCCCCC
Q 028972 111 VEKAKRSRGRT 121 (201)
Q Consensus 111 V~~a~~~~~~~ 121 (201)
|.++.++....
T Consensus 83 V~~a~~~~~~~ 93 (99)
T 2dgs_A 83 VKRAEPRDSKS 93 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccC
Confidence 99999876443
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=8.2e-23 Score=145.23 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=84.6
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+...++.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeecccCCCCCC
Q 028972 111 VEKAKRSRGRTP 122 (201)
Q Consensus 111 V~~a~~~~~~~~ 122 (201)
|.+++++....+
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 999998865443
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=3.3e-22 Score=142.04 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=84.4
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455667889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEeecccCCC
Q 028972 109 ITVEKAKRSRG 119 (201)
Q Consensus 109 i~V~~a~~~~~ 119 (201)
|.|.+++.+..
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999988754
No 10
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.89 E-value=3.5e-23 Score=149.38 Aligned_cols=91 Identities=29% Similarity=0.367 Sum_probs=84.5
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..|....+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34556667889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEeecccCCC
Q 028972 109 ITVEKAKRSRG 119 (201)
Q Consensus 109 i~V~~a~~~~~ 119 (201)
|.|++|..+..
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999988753
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=141.85 Aligned_cols=91 Identities=30% Similarity=0.402 Sum_probs=84.4
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34455677889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEeecccCCC
Q 028972 109 ITVEKAKRSRG 119 (201)
Q Consensus 109 i~V~~a~~~~~ 119 (201)
|.|.+|.++..
T Consensus 87 l~v~~a~~~~~ 97 (105)
T 1x5u_A 87 IRVNKASAHNK 97 (105)
T ss_dssp CEEEETTTTSC
T ss_pred EEEEECCCCCc
Confidence 99999988753
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=6.8e-23 Score=142.51 Aligned_cols=91 Identities=35% Similarity=0.420 Sum_probs=84.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34456788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 028972 111 VEKAKRSRGRT 121 (201)
Q Consensus 111 V~~a~~~~~~~ 121 (201)
|.+++++....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998876443
No 13
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.5e-23 Score=143.94 Aligned_cols=93 Identities=28% Similarity=0.366 Sum_probs=84.4
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 26 SRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 26 ~~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
+....|....++++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||+.|+
T Consensus 12 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 12 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp ---CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 34455556677889999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CeeeEEeecccCC
Q 028972 106 GRLITVEKAKRSR 118 (201)
Q Consensus 106 g~~i~V~~a~~~~ 118 (201)
|+.|.|.+|.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (106)
T 1p27_B 92 GQPISVDWCFVRG 104 (106)
T ss_dssp SSBCEEEESEESS
T ss_pred CcEEEEEeecCCC
Confidence 9999999998874
No 14
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=140.37 Aligned_cols=89 Identities=25% Similarity=0.374 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.....+.++|||+|||+++++++|+++|++||+|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344567889999999999999999999999999999999987 889999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 028972 111 VEKAKRSRGRT 121 (201)
Q Consensus 111 V~~a~~~~~~~ 121 (201)
|.++.++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999876443
No 15
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.8e-22 Score=141.44 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=83.9
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeC-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCe
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTD-PRTRESCGFAFVTMETVEGADRCIKYL-NRSVLEGR 107 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~al~~l-~g~~l~g~ 107 (201)
.+....+.++|||+|||..+++++|+++|++||+|..|.|+.+ +.++.++|||||+|.+.++|++||+.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3455667889999999999999999999999999999999988 778999999999999999999999999 99999999
Q ss_pred eeEEeecccCCCC
Q 028972 108 LITVEKAKRSRGR 120 (201)
Q Consensus 108 ~i~V~~a~~~~~~ 120 (201)
.|.|.+|+++...
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999887643
No 16
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=141.76 Aligned_cols=91 Identities=24% Similarity=0.380 Sum_probs=84.4
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC------CCe
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN------RSV 103 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~------g~~ 103 (201)
.+....+.++|||+|||.++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34556778899999999999999999999999999999999999899999999999999999999999999 999
Q ss_pred eCCeeeEEeecccCCCC
Q 028972 104 LEGRLITVEKAKRSRGR 120 (201)
Q Consensus 104 l~g~~i~V~~a~~~~~~ 120 (201)
|+|+.|.|.++.++...
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999887543
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.6e-22 Score=139.85 Aligned_cols=87 Identities=30% Similarity=0.449 Sum_probs=81.8
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 028972 114 AKRSRGR 120 (201)
Q Consensus 114 a~~~~~~ 120 (201)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887643
No 18
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=2.9e-22 Score=140.00 Aligned_cols=89 Identities=24% Similarity=0.358 Sum_probs=82.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC---eee
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG---RLI 109 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g---~~i 109 (201)
...+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568899999999999999999999999999999999987 79999999999999999999999999999988 999
Q ss_pred EEeecccCCCCCC
Q 028972 110 TVEKAKRSRGRTP 122 (201)
Q Consensus 110 ~V~~a~~~~~~~~ 122 (201)
.|.+|..+..+.+
T Consensus 90 ~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 90 VVKFADTDKESGP 102 (105)
T ss_dssp EEEESCSSCCCSC
T ss_pred EEEECccCcccCC
Confidence 9999998875543
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=139.02 Aligned_cols=88 Identities=20% Similarity=0.363 Sum_probs=82.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||.++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455677899999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|.++.++.
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998775
No 20
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.9e-22 Score=141.40 Aligned_cols=90 Identities=31% Similarity=0.480 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
...+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|.|+
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 34455667888999999999999999999999999999999999988999999999999999999999999998 89999
Q ss_pred eeEEeecccCC
Q 028972 108 LITVEKAKRSR 118 (201)
Q Consensus 108 ~i~V~~a~~~~ 118 (201)
.|.|++|....
T Consensus 87 ~l~V~~a~~~~ 97 (116)
T 2cqd_A 87 KANVNLAYLGA 97 (116)
T ss_dssp ECEEEESTTTC
T ss_pred EEEEEEcccCC
Confidence 99999998764
No 21
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.8e-22 Score=138.46 Aligned_cols=87 Identities=33% Similarity=0.465 Sum_probs=81.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
......+.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEeeccc
Q 028972 110 TVEKAKR 116 (201)
Q Consensus 110 ~V~~a~~ 116 (201)
.|++|+.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 22
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=3e-22 Score=139.60 Aligned_cols=89 Identities=20% Similarity=0.362 Sum_probs=82.0
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+.+..+.++|||+|||.++++++|+++|++|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3455566788999999999999999999999997 999999999989999999999999999999999 79999999999
Q ss_pred eEEeecccCCC
Q 028972 109 ITVEKAKRSRG 119 (201)
Q Consensus 109 i~V~~a~~~~~ 119 (201)
|.|.++.++..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dng_A 85 LRVDIAEGRKQ 95 (103)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99999988753
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=141.44 Aligned_cols=89 Identities=33% Similarity=0.541 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCCC
Q 028972 111 VEKAKRSRG 119 (201)
Q Consensus 111 V~~a~~~~~ 119 (201)
|.+++++..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999988753
No 24
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=137.07 Aligned_cols=84 Identities=26% Similarity=0.385 Sum_probs=77.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35677999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
|+++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9875
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=137.78 Aligned_cols=87 Identities=32% Similarity=0.471 Sum_probs=80.9
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+...++.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 33445567889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eEEeecc
Q 028972 109 ITVEKAK 115 (201)
Q Consensus 109 i~V~~a~ 115 (201)
|.|++|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=139.54 Aligned_cols=85 Identities=24% Similarity=0.410 Sum_probs=80.6
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTEC-HLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.+.++|||+|||.++++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 028972 114 AKRSRG 119 (201)
Q Consensus 114 a~~~~~ 119 (201)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 988753
No 27
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.89 E-value=2.3e-22 Score=150.32 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
++|++..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998765
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.3e-22 Score=139.63 Aligned_cols=89 Identities=21% Similarity=0.394 Sum_probs=81.6
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT-RESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
..+.+..+.++|||+|||.++++++|+++|++|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3444556778999999999999999999999999 999999999887 999999999999999999999 8999999999
Q ss_pred eeEEeecccCCC
Q 028972 108 LITVEKAKRSRG 119 (201)
Q Consensus 108 ~i~V~~a~~~~~ 119 (201)
.|.|.++.++..
T Consensus 85 ~l~V~~a~~~~~ 96 (104)
T 1wi8_A 85 RIRVDVADQAQD 96 (104)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999988753
No 29
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=142.29 Aligned_cols=91 Identities=27% Similarity=0.408 Sum_probs=84.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCee--------EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVT--------ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 101 (201)
.+....+.++|||+|||.++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345667889999999999999999999999999998 699999988999999999999999999999999999
Q ss_pred CeeCCeeeEEeecccCCCC
Q 028972 102 SVLEGRLITVEKAKRSRGR 120 (201)
Q Consensus 102 ~~l~g~~i~V~~a~~~~~~ 120 (201)
+.|.|+.|.|.+++.+...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999887643
No 30
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=138.83 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE--------EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--------CHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
+..+.+.++.++|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 445667778899999999999999999999999999999 999999889999999999999999999999999
Q ss_pred CCCeeCCeeeEEeecc
Q 028972 100 NRSVLEGRLITVEKAK 115 (201)
Q Consensus 100 ~g~~l~g~~i~V~~a~ 115 (201)
||..|.|+.|.|++|+
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999984
No 31
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=2.1e-22 Score=141.20 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=79.4
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45566778899999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEeecc
Q 028972 110 TVEKAK 115 (201)
Q Consensus 110 ~V~~a~ 115 (201)
.|++|.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=142.22 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeeeEEeec
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL-NRSVLEGRLITVEKA 114 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l-~g~~l~g~~i~V~~a 114 (201)
+++|||+|||.++|+++|.++|++|| +|..|.|+.++.++.++|||||+|.+.++|++||+.| ++..|+|+.|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999977 456799999999999
Q ss_pred ccCCCC
Q 028972 115 KRSRGR 120 (201)
Q Consensus 115 ~~~~~~ 120 (201)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 877543
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=1.5e-22 Score=142.72 Aligned_cols=93 Identities=26% Similarity=0.312 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 26 SRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 26 ~~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
+....|....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+
T Consensus 15 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 15 ELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp ---CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34455566677889999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeeeEEeecccCC
Q 028972 106 GRLITVEKAKRSR 118 (201)
Q Consensus 106 g~~i~V~~a~~~~ 118 (201)
|+.|.|.++.++.
T Consensus 95 g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 95 GQTIQVDWCFVKG 107 (110)
T ss_dssp TEECEEEESEESS
T ss_pred CcEEEEEEcccCC
Confidence 9999999998875
No 34
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=2.9e-22 Score=146.91 Aligned_cols=88 Identities=26% Similarity=0.369 Sum_probs=82.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 028972 113 KAKRSRGR 120 (201)
Q Consensus 113 ~a~~~~~~ 120 (201)
+|+.+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887644
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=9.8e-22 Score=136.92 Aligned_cols=91 Identities=31% Similarity=0.491 Sum_probs=81.7
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+....+.++|||+|||.++++++|+++|++||+|..|.|+.++. .++|||||+|.+.++|++||+.||++.|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3455667788999999999999999999999999999999998753 38899999999999999999999999999999
Q ss_pred eEEeecccCCCCC
Q 028972 109 ITVEKAKRSRGRT 121 (201)
Q Consensus 109 i~V~~a~~~~~~~ 121 (201)
|.|.++.++....
T Consensus 85 l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 85 IEVNNATARVMTN 97 (103)
T ss_dssp CEEEECCSSCCCC
T ss_pred EEEEEcccCCCCC
Confidence 9999999876443
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=3.4e-22 Score=133.68 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=78.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
+++|||+|||.++++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+|.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 028972 117 SR 118 (201)
Q Consensus 117 ~~ 118 (201)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=2.1e-22 Score=135.30 Aligned_cols=82 Identities=38% Similarity=0.465 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46778999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 028972 114 AK 115 (201)
Q Consensus 114 a~ 115 (201)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.9e-22 Score=138.33 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=79.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPR---TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
.+.++|||+|||.++++++|+++|++||+|..|.|+.++. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998776 6689999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 028972 112 EKAKRSRGR 120 (201)
Q Consensus 112 ~~a~~~~~~ 120 (201)
.++..+...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999887643
No 39
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=1.8e-22 Score=146.65 Aligned_cols=88 Identities=34% Similarity=0.471 Sum_probs=82.8
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|+++.+++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998875
No 40
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=141.74 Aligned_cols=85 Identities=34% Similarity=0.560 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+..+..+|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+|+++.
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998764
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=2.5e-22 Score=140.55 Aligned_cols=90 Identities=23% Similarity=0.250 Sum_probs=83.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee---CC
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL---EG 106 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l---~g 106 (201)
.+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..| .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 345566788999999999999999999999999999999999988999999999999999999999999999987 89
Q ss_pred eeeEEeecccCCC
Q 028972 107 RLITVEKAKRSRG 119 (201)
Q Consensus 107 ~~i~V~~a~~~~~ 119 (201)
+.|.|.++..+..
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999988754
No 42
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=137.72 Aligned_cols=87 Identities=25% Similarity=0.357 Sum_probs=78.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||.++++++|+++|++||.|..|.|+. ++.++|||||+|++.++|++||+.||++.|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 344556778999999999999999999999999999999865 45578999999999999999999999999999999
Q ss_pred EEeecccCCC
Q 028972 110 TVEKAKRSRG 119 (201)
Q Consensus 110 ~V~~a~~~~~ 119 (201)
.|++++.+..
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9999988753
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-21 Score=136.57 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=81.5
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
...+..+.++|||+|||.++++++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 44556678899999999999999999999999999999999987 69999999999999999999999999999999999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|+++....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999997654
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=139.93 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCC--eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC----ee
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGK--VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS----VL 104 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~----~l 104 (201)
+.....-.+|||+|||+++|+++|.++|++||. |..|.|+.++.++.++|||||+|.+.++|++||+.||+. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 345566779999999999999999999999995 678999999999999999999999999999999999997 48
Q ss_pred CCeeeEEeeccc
Q 028972 105 EGRLITVEKAKR 116 (201)
Q Consensus 105 ~g~~i~V~~a~~ 116 (201)
+|+.|.|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999975
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=5.8e-23 Score=139.94 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=72.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCC--CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
.+|||+|||.++++++|+++|++|| +|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 028972 116 RSRGR 120 (201)
Q Consensus 116 ~~~~~ 120 (201)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87543
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=4.4e-22 Score=137.01 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=79.5
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
|.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.6e-22 Score=139.08 Aligned_cols=90 Identities=24% Similarity=0.404 Sum_probs=83.1
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..+....+.++|||+|||+++++++|+++|.+||+|..|.|+.++.++.++|||||+|++.++|++||+. |++.|+|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 3445567788999999999999999999999999999999999988999999999999999999999997 999999999
Q ss_pred eEEeecccCCC
Q 028972 109 ITVEKAKRSRG 119 (201)
Q Consensus 109 i~V~~a~~~~~ 119 (201)
|.|.++.++..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987753
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=139.36 Aligned_cols=89 Identities=26% Similarity=0.376 Sum_probs=83.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556678899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|.+++++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998764
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=135.46 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=80.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.+ .+|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 4455677889999999999999999999999999999999987543 68999999999999999999999999999999
Q ss_pred EEeecccCCCC
Q 028972 110 TVEKAKRSRGR 120 (201)
Q Consensus 110 ~V~~a~~~~~~ 120 (201)
.|.+++.+...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999887543
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=137.15 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=80.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcC-CCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCeeeE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGG-EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV-LEGRLIT 110 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~-l~g~~i~ 110 (201)
+..+.++|||+|||.++++++|+++|.+ ||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4467789999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EeecccCCC
Q 028972 111 VEKAKRSRG 119 (201)
Q Consensus 111 V~~a~~~~~ 119 (201)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999987653
No 51
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=135.99 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC----
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG---- 106 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g---- 106 (201)
|......++|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|++.++|++||+.||++.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 444567889999999999999999999999999999999865 799999999999999999999999999
Q ss_pred -eeeEEeecccCC
Q 028972 107 -RLITVEKAKRSR 118 (201)
Q Consensus 107 -~~i~V~~a~~~~ 118 (201)
+.|.|++|+++.
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998753
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6e-22 Score=136.96 Aligned_cols=87 Identities=17% Similarity=0.355 Sum_probs=81.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCee-EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee--
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVT-ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL-- 108 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~-- 108 (201)
....+.++|||+|||.++++++|+++|++||+|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|..
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3455778999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred --eEEeecccCC
Q 028972 109 --ITVEKAKRSR 118 (201)
Q Consensus 109 --i~V~~a~~~~ 118 (201)
|.|.+|+...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999997764
No 53
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.87 E-value=7.5e-22 Score=149.03 Aligned_cols=91 Identities=26% Similarity=0.326 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
...|....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||+.|.|+
T Consensus 63 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp ---CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33455566788999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eeEEeecccCC
Q 028972 108 LITVEKAKRSR 118 (201)
Q Consensus 108 ~i~V~~a~~~~ 118 (201)
.|.|.||..+.
T Consensus 143 ~l~V~~a~~~~ 153 (165)
T 1rk8_A 143 TIQVDWCFVKG 153 (165)
T ss_dssp ECEEEESEECC
T ss_pred EEEEEEecCCC
Confidence 99999998875
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=135.65 Aligned_cols=86 Identities=26% Similarity=0.365 Sum_probs=78.4
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+..+|||+|||..+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345566788999999999999999999999999999999999885 8999999999999999999999999999999999
Q ss_pred EEeeccc
Q 028972 110 TVEKAKR 116 (201)
Q Consensus 110 ~V~~a~~ 116 (201)
.|.+|+.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999864
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=7.9e-22 Score=140.37 Aligned_cols=82 Identities=29% Similarity=0.514 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
...+|||+|||+++++++|+++|++||+|..|.|+.++ +.++|||||+|.+.++|++||+.||++.|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999875 4478999999999999999999999999999999999998
Q ss_pred cCCC
Q 028972 116 RSRG 119 (201)
Q Consensus 116 ~~~~ 119 (201)
.+..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7653
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=1.4e-21 Score=131.90 Aligned_cols=83 Identities=28% Similarity=0.568 Sum_probs=76.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 4456778899999999999999999999999999999999999899999999999999999999997 688899999999
Q ss_pred Eeec
Q 028972 111 VEKA 114 (201)
Q Consensus 111 V~~a 114 (201)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=133.04 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCC-cccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRE-SCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~-~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..++|||+|||.++++++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999998877665 8999999999999999999999999999999999999
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7764
No 58
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.5e-22 Score=141.19 Aligned_cols=83 Identities=27% Similarity=0.465 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
...++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .||++.|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34679999999999999999999999999999999999988999999999999999999999 89999999999999999
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
..+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 8764
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=1.5e-21 Score=133.13 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=79.6
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
|....+.++|||+|||.++++++|+++|++||+|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345567889999999999999999999999999999999874 788999999999999999999999999999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.++++..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998765
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=135.11 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=77.1
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHH----HHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 33 AANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
+....++|||+|||+++++++|+ ++|++||+|..|.|+.++.+ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567799999999999999999 99999999999999988755 789999999999999999999999999999
Q ss_pred eEEeecccCCC
Q 028972 109 ITVEKAKRSRG 119 (201)
Q Consensus 109 i~V~~a~~~~~ 119 (201)
|.|++|++...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999987653
No 61
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.1e-22 Score=144.27 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=76.5
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+....++|||+|||+++++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+ ||++.|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999886666666799999999999999999999999 99999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
+|..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=7.9e-22 Score=140.68 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecc
Q 028972 112 EKAK 115 (201)
Q Consensus 112 ~~a~ 115 (201)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-22 Score=139.70 Aligned_cols=88 Identities=24% Similarity=0.404 Sum_probs=82.4
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
|....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 44556678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.+|..+.
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99998765
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.3e-22 Score=135.75 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
..+..++|||+|||.++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556789999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98765
No 65
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=138.89 Aligned_cols=87 Identities=25% Similarity=0.515 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. +++.|+|+.|.|
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3344568999999999999999999999999999999999988999999999999999999999996 999999999999
Q ss_pred eecccCCC
Q 028972 112 EKAKRSRG 119 (201)
Q Consensus 112 ~~a~~~~~ 119 (201)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99988754
No 66
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=3e-22 Score=139.15 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=78.6
Q ss_pred CCCCeEEEeCCCC------CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-e
Q 028972 35 NPGNNLYVTGLST------RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG-R 107 (201)
Q Consensus 35 ~~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g-~ 107 (201)
...++|||+|||. ++++++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||+.|||+.|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eeEEeecccC
Q 028972 108 LITVEKAKRS 117 (201)
Q Consensus 108 ~i~V~~a~~~ 117 (201)
.|.|.+|.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999764
No 67
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.6e-21 Score=132.67 Aligned_cols=88 Identities=25% Similarity=0.414 Sum_probs=80.9
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+.+..+.++|||+|||.++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++.|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34556778899999999999999999999999999999999998899999999999999999999998 4789999999
Q ss_pred EEeecccCCC
Q 028972 110 TVEKAKRSRG 119 (201)
Q Consensus 110 ~V~~a~~~~~ 119 (201)
.|.++.++..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999988753
No 68
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=5e-21 Score=133.44 Aligned_cols=84 Identities=26% Similarity=0.378 Sum_probs=75.6
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||.++++++|+++|++||+|..|.|+. +||||+|.+.++|++||+.||++.|+|+.|
T Consensus 4 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 4 GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 445556788999999999999999999999999999998873 599999999999999999999999999999
Q ss_pred EEeecccCCCCC
Q 028972 110 TVEKAKRSRGRT 121 (201)
Q Consensus 110 ~V~~a~~~~~~~ 121 (201)
.|.+++++....
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 999998876443
No 69
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=136.34 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHH---HHHcCCCCeeEEEEeeCCCCC---CcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLE---KFFGGEGKVTECHLVTDPRTR---ESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
....+.++|||+|||+++++++|. ++|.+||+|..|.|+.++.++ .++|||||+|++.++|++||+.||++.|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344567899999999999999999 999999999999999887644 55699999999999999999999999999
Q ss_pred CeeeEEeecccCC
Q 028972 106 GRLITVEKAKRSR 118 (201)
Q Consensus 106 g~~i~V~~a~~~~ 118 (201)
|+.|.|++|.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998875
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=3.3e-21 Score=130.48 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 71
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=7.8e-22 Score=135.31 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.++.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34567999999999999999999999999999888888888999999999999999999999999999999999999998
Q ss_pred ccc
Q 028972 114 AKR 116 (201)
Q Consensus 114 a~~ 116 (201)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 763
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=8.1e-21 Score=136.66 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=82.5
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...+.++|||+|||..+++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecccCCCCCC
Q 028972 113 KAKRSRGRTP 122 (201)
Q Consensus 113 ~a~~~~~~~~ 122 (201)
+|.......+
T Consensus 110 ~a~~~~~~~~ 119 (124)
T 2kt5_A 110 LVASQIDLEH 119 (124)
T ss_dssp EECCTTCCCC
T ss_pred EeCCCCCCCC
Confidence 9988764443
No 73
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=132.66 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=76.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||.++++++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||+.||++.|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34456678999999999999999999999999987 45555 578899999999999999999999999999999999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|++++++.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998875
No 74
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=9.6e-22 Score=143.00 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=82.5
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE--EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC----
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS---- 102 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~---- 102 (201)
..+....+..+|||+|||+++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+. +|++||+.|||+
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34455677889999999999999999999999999966 99999999999999999999999 999999999999
Q ss_pred eeCCeeeEEeecccCCC
Q 028972 103 VLEGRLITVEKAKRSRG 119 (201)
Q Consensus 103 ~l~g~~i~V~~a~~~~~ 119 (201)
.|+|+.|.|++|++...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999987653
No 75
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=145.06 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=77.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCC--CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
...+|||+|||+++++++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=128.95 Aligned_cols=83 Identities=22% Similarity=0.365 Sum_probs=77.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
.....++|||+|||.++++++|+++|++| .|..|.|+.+ .++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999998 689999999999999999999999 99999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+|.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=130.78 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=74.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh--CCCeeCCee
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL--NRSVLEGRL 108 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l--~g~~l~g~~ 108 (201)
....++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.| ++..|.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 455667889999999999999999999999999999988764 589999999999999999977 567899999
Q ss_pred eEEeecccCCCC
Q 028972 109 ITVEKAKRSRGR 120 (201)
Q Consensus 109 i~V~~a~~~~~~ 120 (201)
|.|++|+.+...
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999877543
No 78
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=131.11 Aligned_cols=84 Identities=30% Similarity=0.481 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++++++|+++|++|+ .|.++.++.++.++|||||+|.+.++|++||+.||++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456778999999999999999999999874 5777778788999999999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.+|+++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998875
No 79
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.5e-22 Score=133.05 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=76.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999998776
Q ss_pred cc
Q 028972 114 AK 115 (201)
Q Consensus 114 a~ 115 (201)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=4.7e-21 Score=135.14 Aligned_cols=87 Identities=32% Similarity=0.566 Sum_probs=76.2
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.+...+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|+|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 345667889999999999999999999999999999999999889999999999999999999999966 5899999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.++.++.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998765
No 81
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.3e-21 Score=143.18 Aligned_cols=90 Identities=30% Similarity=0.475 Sum_probs=83.6
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..|....+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34555667889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEeecccCC
Q 028972 109 ITVEKAKRSR 118 (201)
Q Consensus 109 i~V~~a~~~~ 118 (201)
|.|.+++...
T Consensus 119 l~V~~a~~~~ 128 (135)
T 2lea_A 119 LRVQMARYGR 128 (135)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998765
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.8e-21 Score=135.56 Aligned_cols=88 Identities=32% Similarity=0.516 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
+..+....+.++|||+|||.++++++|+++|++||+|..|.|+.++ +.++|||||+|.+.++|++||+.|||..|+|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445566778899999999999999999999999999999998875 34889999999999999999999999999999
Q ss_pred eeEEeecccC
Q 028972 108 LITVEKAKRS 117 (201)
Q Consensus 108 ~i~V~~a~~~ 117 (201)
.|.|.+|+++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999875
No 83
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=128.28 Aligned_cols=79 Identities=27% Similarity=0.463 Sum_probs=73.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||+|..|.|+ +|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 36999999999999999999999999999999999
Q ss_pred cccCCCC
Q 028972 114 AKRSRGR 120 (201)
Q Consensus 114 a~~~~~~ 120 (201)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887643
No 84
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9e-22 Score=139.68 Aligned_cols=92 Identities=26% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+.++|||+|||.++++++|.++|.+||.|..|.+..+..++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44456788999999999999999999999999984332222222788899999999999999999999999999999999
Q ss_pred EeecccCCCCCC
Q 028972 111 VEKAKRSRGRTP 122 (201)
Q Consensus 111 V~~a~~~~~~~~ 122 (201)
|.+|+.+....+
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998765443
No 85
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=132.46 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=79.1
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee------
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL------ 104 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l------ 104 (201)
.....+.++|||+|||.++++++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445667899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred --CCeeeEEeecccC
Q 028972 105 --EGRLITVEKAKRS 117 (201)
Q Consensus 105 --~g~~i~V~~a~~~ 117 (201)
.+++|.|.||.+.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999999854
No 86
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=5.4e-21 Score=142.97 Aligned_cols=88 Identities=28% Similarity=0.423 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||+++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccCCC
Q 028972 112 EKAKRSRG 119 (201)
Q Consensus 112 ~~a~~~~~ 119 (201)
.+|.++..
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99988753
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=134.22 Aligned_cols=82 Identities=23% Similarity=0.305 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeee
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR--SVLEGRLI 109 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g--~~l~g~~i 109 (201)
...++.++|||+|||+++++++|+++|++||+|..|.|+.+ +|||||+|++.++|++||+.|++ ..|.|+.|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567889999999999999999999999999999999865 48999999999999999998864 78999999
Q ss_pred EEeecccCCC
Q 028972 110 TVEKAKRSRG 119 (201)
Q Consensus 110 ~V~~a~~~~~ 119 (201)
.|.+|+.+..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999987753
No 88
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=131.70 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCe
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS--VLEGR 107 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~--~l~g~ 107 (201)
.+...++..+|||+|||+++++++|+++|++||+|..|.|+.+ +|||||+|++.++|++||+.|++. .|.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 4455678889999999999999999999999999999988754 479999999999999999988764 59999
Q ss_pred eeEEeecccCCCC
Q 028972 108 LITVEKAKRSRGR 120 (201)
Q Consensus 108 ~i~V~~a~~~~~~ 120 (201)
.|.|++++.+...
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999999877543
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=7.1e-21 Score=136.82 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=77.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++|| .|||+.|+|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999999999889999999999999999999999 699999999999999998
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=135.36 Aligned_cols=81 Identities=15% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.....+|||+|||.++|+++|.++|++||+|..|.|+.++. +.++|||||+|.+.++|++||. ++++.|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999886 9999999999999999999999 999999999999998
Q ss_pred ccc
Q 028972 114 AKR 116 (201)
Q Consensus 114 a~~ 116 (201)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=131.85 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeee
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV--LEGRLI 109 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~--l~g~~i 109 (201)
...+|+.+|||+|||.++++++|.++|++||+|..|.|+.. +|||||+|++.++|++||+.|++.. |.|+.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 45568889999999999999999999999999999998753 4799999999999999999999875 789999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|++++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998763
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=128.17 Aligned_cols=82 Identities=28% Similarity=0.437 Sum_probs=74.4
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+.++|||+|||.++++++|+++|++||.|..|.|+. +||||+|.+.++|++||+.||++.|.|+.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34456778999999999999999999999999999999874 3999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 028972 111 VEKAKRSRGR 120 (201)
Q Consensus 111 V~~a~~~~~~ 120 (201)
|.+++++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999887543
No 93
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.85 E-value=3e-21 Score=137.37 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
....++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|++.++|++||+.||+++|+|+.|+|.+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 346789999999999999999999999999999999764 7999999999999999999999999999844333
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=133.66 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=78.6
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCC-eeEEEEe-eCCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeeeE
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGK-VTECHLV-TDPRTRESCGFAFVTMETVEGADRCIKYLN--RSVLEGRLIT 110 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~al~~l~--g~~l~g~~i~ 110 (201)
.+.++|||+|||.++++++|.++|.+||. |..|.|+ .++.++.++|||||+|.+.++|++||+.|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999988 788888999999999999999999999996 5899999999
Q ss_pred EeecccCCC
Q 028972 111 VEKAKRSRG 119 (201)
Q Consensus 111 V~~a~~~~~ 119 (201)
|.+|.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999988764
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=135.44 Aligned_cols=88 Identities=24% Similarity=0.428 Sum_probs=75.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCC-CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDP-RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
..+......++|||+|||.++++++|+++|++|| |..|.|+.++ .++.++|||||+|.+.++|++|| .|||..|+|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3345567788999999999999999999999999 9999999987 58999999999999999999999 7999999999
Q ss_pred eeEEeecccCC
Q 028972 108 LITVEKAKRSR 118 (201)
Q Consensus 108 ~i~V~~a~~~~ 118 (201)
.|.|.+++++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999998753
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=132.39 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||+++++++|+++|++||.| .|.|+.++ +++++|||||+|++.++|++||+ +|++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 344567899999999999999999999999954 99999998 89999999999999999999996 8999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9987654
No 97
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=128.63 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC--Ceee
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE--GRLI 109 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~--g~~i 109 (201)
....+.++|||+|||.++++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34566789999999999999999999999999999998754 579999999999999999999999999 9999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|++++++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998875
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.3e-21 Score=132.56 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCCCCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCeeeE
Q 028972 34 ANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS--VLEGRLIT 110 (201)
Q Consensus 34 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~--~l~g~~i~ 110 (201)
..+.++|||+|||+ ++++++|+++|++||+|..|.|+.++ |||||+|++.++|++||+.||+. .|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45788999999999 99999999999999999999998654 69999999999999999999864 59999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|++|+...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 99
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=138.26 Aligned_cols=84 Identities=36% Similarity=0.440 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
.....+..+|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred Eeec
Q 028972 111 VEKA 114 (201)
Q Consensus 111 V~~a 114 (201)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 100
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=2.3e-21 Score=127.30 Aligned_cols=75 Identities=28% Similarity=0.516 Sum_probs=72.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
+|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999999886
No 101
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=143.12 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=79.6
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...++++|||+|||..+++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+|....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=128.33 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=75.7
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||..+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3445567789999999999999999999999999999999854 4799999999999999999999999999999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999998865
No 103
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=9.8e-21 Score=132.53 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEeCCCCCC------cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 31 PDAANPGNNLYVTGLSTRV------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
+......++|||+|||..+ ++++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|++||..|||..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3445557899999999999 889999999999999999888 45889999999999999999999999999999
Q ss_pred CCe-eeEEeecccC
Q 028972 105 EGR-LITVEKAKRS 117 (201)
Q Consensus 105 ~g~-~i~V~~a~~~ 117 (201)
.|+ .|.|.+|...
T Consensus 87 ~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHTFRVNLFTDF 100 (105)
T ss_dssp STTCEEEEECSCCC
T ss_pred CCCceEEEEEcchH
Confidence 998 9999998754
No 104
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=130.68 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
.....++|||+|||+++++++|+++|.+||.|.. |.|+.+ .++.++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888877 6899999999999999999999996 999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987653
No 105
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=135.08 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCe-eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKV-TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
....+..+|||+|||+++++++|+++|++||.| ..|.|+.++ ++.++|||||+|.+.++|++||+. |++.|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345567899999999999999999999999999 889999998 899999999999999999999995 99999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.+|..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997654
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=133.92 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeee
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR--SVLEGRLI 109 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g--~~l~g~~i 109 (201)
...++..+|||+|||+++++++|+++|++||+|..|.|+.+ +|||||+|++.++|++||+.|++ ..|.|+.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567889999999999999999999999999999999865 58999999999999999998874 68999999
Q ss_pred EEeecccCCCC
Q 028972 110 TVEKAKRSRGR 120 (201)
Q Consensus 110 ~V~~a~~~~~~ 120 (201)
.|.+|+.+...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999877543
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=125.39 Aligned_cols=81 Identities=25% Similarity=0.380 Sum_probs=73.9
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCe
Q 028972 29 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL-NRSVLEGR 107 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l-~g~~l~g~ 107 (201)
..|....+.++|||+|||.++++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.| ++..|+|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 34555677889999999999999999999999999999999864 579999999999999999999 99999999
Q ss_pred eeEEeecc
Q 028972 108 LITVEKAK 115 (201)
Q Consensus 108 ~i~V~~a~ 115 (201)
.|.|+||+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 108
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=126.20 Aligned_cols=80 Identities=29% Similarity=0.506 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++++++|+++|++||.|..|.|+. +||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456778999999999999999999999999999999873 39999999999999999999999999999999
Q ss_pred eecccCCC
Q 028972 112 EKAKRSRG 119 (201)
Q Consensus 112 ~~a~~~~~ 119 (201)
.++++...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987753
No 109
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.84 E-value=2.7e-20 Score=131.22 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEeCCCCC-CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 32 DAANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
++..+.++|||+|||++ +++++|+++|++||+|..|.| ++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44556689999999999 999999999999999999988 357999999999999999999999999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.+++...
T Consensus 94 V~~a~~~~ 101 (110)
T 1wf1_A 94 INMAGEPK 101 (110)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=9.7e-21 Score=135.38 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCC---eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
.+....++|||+|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++||+ ||++.|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34456789999999999999999999999999 89999999885 9999999999999999999999 9999999999
Q ss_pred eEEeecccC
Q 028972 109 ITVEKAKRS 117 (201)
Q Consensus 109 i~V~~a~~~ 117 (201)
|.|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998654
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5e-21 Score=126.15 Aligned_cols=76 Identities=33% Similarity=0.590 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.++ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999987
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=130.26 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999875 4799999999999999999999999999999999
Q ss_pred ecccCCC
Q 028972 113 KAKRSRG 119 (201)
Q Consensus 113 ~a~~~~~ 119 (201)
+++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9988754
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.8e-20 Score=125.95 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
..+..|||+||++.+|+++|+++|.+||+|..|.+.. ++|||||+|.+.++|++|++.||+..|.|+.|.|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999875 4689999999999999999999999999999999998
Q ss_pred c
Q 028972 115 K 115 (201)
Q Consensus 115 ~ 115 (201)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=135.66 Aligned_cols=85 Identities=14% Similarity=0.341 Sum_probs=75.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHH----HHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
+....+.++|||+|||+.+++++|+ ++|++||+|..|.+.. ++.++|||||+|.+.++|+.||+.|||..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445678899999999999998876 6999999999987753 67889999999999999999999999999999
Q ss_pred eeeEEeecccCC
Q 028972 107 RLITVEKAKRSR 118 (201)
Q Consensus 107 ~~i~V~~a~~~~ 118 (201)
+.|.|.||+.+.
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998764
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=2.7e-20 Score=131.08 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+.++|||+|||.++++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4556678899999999999999999999999999999987 47999999999999999999999999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.+++.+.
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99998765
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2e-21 Score=134.86 Aligned_cols=85 Identities=22% Similarity=0.293 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+..+|||+|||.++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34456789999999999999999999999999877 555666678899999999999999999999 9999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.+|+++.
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9998765
No 117
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=9.6e-21 Score=150.27 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=77.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCC--CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..++|||+|||+++|+++|+++|++|| +|+.|.|+.++.+++++|||||+|++.++|++||+.||++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 466899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=127.71 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
......++|||+|||.++++++|+++|.+||.|. +.++.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999997 666543 56789999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.+++++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998764
No 119
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-22 Score=142.99 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE--------EEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--------CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
+...+.++|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567789999999999999999999999999998 8899888889999999999999999999999999999
Q ss_pred eCCeeeEEeecccCCC
Q 028972 104 LEGRLITVEKAKRSRG 119 (201)
Q Consensus 104 l~g~~i~V~~a~~~~~ 119 (201)
|.|+.|.|.+|.++..
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999988753
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.1e-20 Score=133.72 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
.+...++|||+|||+++++++|+++|++|| +|..|.|+. ..++|||||+|++.++|++||+.|||..|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899998853 247799999999999999999999999999999999
Q ss_pred eecccC
Q 028972 112 EKAKRS 117 (201)
Q Consensus 112 ~~a~~~ 117 (201)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998754
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=132.39 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
......+|||+|||+++++++|+++|++| .|..|.|+.++. +.++|||||+|.+.++|++|| .||++.|+|+.|.|.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34446799999999999999999999999 899999999874 999999999999999999999 599999999999998
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
.+..+
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88654
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-19 Score=124.47 Aligned_cols=83 Identities=31% Similarity=0.375 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCC--CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGE--GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
...+....+.++|||+|||..+++++|+++|++| |.|..|.++ +|||||+|.+.++|++||+.||++.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3445566778899999999999999999999999 999988775 369999999999999999999999999
Q ss_pred CeeeEEeecccCC
Q 028972 106 GRLITVEKAKRSR 118 (201)
Q Consensus 106 g~~i~V~~a~~~~ 118 (201)
|+.|.|.+|+++.
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998765
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.5e-21 Score=131.53 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=73.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.+ |++|+..|||..|+|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999888999999999999999 99999999999999999999999876
Q ss_pred CC
Q 028972 118 RG 119 (201)
Q Consensus 118 ~~ 119 (201)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.6e-20 Score=128.21 Aligned_cols=78 Identities=17% Similarity=0.367 Sum_probs=71.0
Q ss_pred CCCCCCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 33 AANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
..++.++|||+|||. .+++++|.++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456788999999998 99999999999999999999885 479999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.+++.+.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9998765
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=1.5e-20 Score=137.64 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCC---eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
+....++|||+|||+++|+++|+++|++||. |..|.|+.++. +.++|||||+|.+.++|++||+ ||++.|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999986 9999999999999999999999 99999999999
Q ss_pred EEeecccC
Q 028972 110 TVEKAKRS 117 (201)
Q Consensus 110 ~V~~a~~~ 117 (201)
.|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 126
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.7e-20 Score=129.01 Aligned_cols=83 Identities=17% Similarity=0.373 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHH----HHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 33 AANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
..++.++|||+|||.++++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678899999999999999999 9999999999998873 5677899999999999999999999999999999
Q ss_pred eEEeecccCC
Q 028972 109 ITVEKAKRSR 118 (201)
Q Consensus 109 i~V~~a~~~~ 118 (201)
|.|.+++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=126.06 Aligned_cols=79 Identities=29% Similarity=0.428 Sum_probs=70.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCC-eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC-CeeCCeeeEE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGK-VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR-SVLEGRLITV 111 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g-~~l~g~~i~V 111 (201)
..+.++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.||+ ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456779999999999999999999999999 5555553 357999999999999999999999 9999999999
Q ss_pred eecccCCC
Q 028972 112 EKAKRSRG 119 (201)
Q Consensus 112 ~~a~~~~~ 119 (201)
.+++++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987753
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.3e-20 Score=128.09 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
....++|||+|||.++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999873 458999999999999999999999999999999999
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
|+++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=127.70 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+..+|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445567899999999999999999999999988766 237889999999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.++.++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998764
No 130
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=132.66 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=78.3
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCC---eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
..+....++|||+|||+++++++|+++|..||. |..|.|+.++. +.++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345567889999999999999999999999988 89999999886 9999999999999999999999 999999999
Q ss_pred eeEEeecccC
Q 028972 108 LITVEKAKRS 117 (201)
Q Consensus 108 ~i~V~~a~~~ 117 (201)
.|.|.++..+
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998754
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-19 Score=122.43 Aligned_cols=81 Identities=30% Similarity=0.370 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|| ++++++|+++|++||+|..|.|. .++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557789999996 89999999999999999999885 34589999999999999999999999999999999
Q ss_pred eecccCCCC
Q 028972 112 EKAKRSRGR 120 (201)
Q Consensus 112 ~~a~~~~~~ 120 (201)
.+|.++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999887543
No 132
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=123.50 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
....+|||+|||.++++++|+++|.+||+|..| +.++.++. ||||+|.+.++|++||+ ||++.|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 455799999999999999999999999999987 44555554 99999999999999999 9999999999999998
Q ss_pred ccCCC
Q 028972 115 KRSRG 119 (201)
Q Consensus 115 ~~~~~ 119 (201)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76653
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=124.67 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCCC------cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-ee
Q 028972 37 GNNLYVTGLSTRV------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR-LI 109 (201)
Q Consensus 37 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~-~i 109 (201)
+++|||+|||..+ ++++|+++|++||+|..|.|+ +.++.++|||||+|.+.++|++||+.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 45889999999999999999999999999999999 88
Q ss_pred EE
Q 028972 110 TV 111 (201)
Q Consensus 110 ~V 111 (201)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=127.83 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=71.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.|.+++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 5689999999999999999999999999999999999887
Q ss_pred C
Q 028972 118 R 118 (201)
Q Consensus 118 ~ 118 (201)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 135
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=1.5e-19 Score=124.74 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 32 DAANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
...++.++|||+|||. ++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456788999999998 99999999999999999999884 47999999999999999999999999999999
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
|++++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998765
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=1.1e-19 Score=128.98 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..++.+|||+|||..+++++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999864 44589999999999999999999999999999999999
Q ss_pred cccCC
Q 028972 114 AKRSR 118 (201)
Q Consensus 114 a~~~~ 118 (201)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98653
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-20 Score=131.11 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCCC-CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeeeE
Q 028972 34 ANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR--SVLEGRLIT 110 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g--~~l~g~~i~ 110 (201)
..+.++|||+|||++ +++++|+++|++||+|..|.|+.. +|||||+|++.++|++||+.|++ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 557889999999998 999999999999999999999743 58999999999999999998864 569999999
Q ss_pred EeecccCCCC
Q 028972 111 VEKAKRSRGR 120 (201)
Q Consensus 111 V~~a~~~~~~ 120 (201)
|++|+.+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876543
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.2e-20 Score=123.73 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=71.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
+|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998899999999999999999999999 6899999999999875
No 139
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=1.3e-20 Score=138.34 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+.......+|||+|||+++|+++|+++|++|| |+.|.|+.++. ++++|||||+|++.++|++|| .||++.|+|+.|.
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 34456678999999999999999999999999 77999999875 999999999999999999999 6999999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.++....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 99987764
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=2e-19 Score=140.83 Aligned_cols=84 Identities=29% Similarity=0.452 Sum_probs=77.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..|.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8654
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=3.4e-20 Score=128.82 Aligned_cols=85 Identities=24% Similarity=0.475 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
|....+.++|||+|||.++++++|.++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+ ++..|+|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 3445567899999999999999999999999999999999998 99999999999999999999999 99999999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.++..+.
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99998765
No 142
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.8e-19 Score=132.61 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+..+|||+|||..+++++|.++|++||.|..|.++.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 44566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eeccc
Q 028972 112 EKAKR 116 (201)
Q Consensus 112 ~~a~~ 116 (201)
.||++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 143
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=123.69 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTEC-HLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
....++|||+|||+++++++|+++|.+||+|..| .|+.++.++ .|||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456799999999999999999999999999999 587776543 49999999999999999999999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
+|.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998773
No 144
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=127.86 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCCCeEEE--eCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee-----CC
Q 028972 34 ANPGNNLYV--TGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL-----EG 106 (201)
Q Consensus 34 ~~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l-----~g 106 (201)
..++.+||| +||++++++++|+++|++||+|..|.|+.+ +|||||+|++.++|++|++.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456788999 779999999999999999999999987642 58999999999999999999999998 68
Q ss_pred eeeEEeecccCCCCCC
Q 028972 107 RLITVEKAKRSRGRTP 122 (201)
Q Consensus 107 ~~i~V~~a~~~~~~~~ 122 (201)
.+|.|.++.......|
T Consensus 96 ~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EECEEEEESCCCCSSC
T ss_pred cEEEEEecccCcccCC
Confidence 9999999987654443
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=136.13 Aligned_cols=85 Identities=26% Similarity=0.409 Sum_probs=74.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEE--------EEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTEC--------HLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v--------~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
...+.++|||+|||+.+++++|.++|.+||.|..| .+. .++.++|||||+|.+.++|++||+.|||..|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 35677899999999999999999999999998764 222 3788999999999999999999999999999
Q ss_pred CCeeeEEeecccCCCC
Q 028972 105 EGRLITVEKAKRSRGR 120 (201)
Q Consensus 105 ~g~~i~V~~a~~~~~~ 120 (201)
.|+.|.|.+|+....+
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999876533
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=3.1e-19 Score=136.98 Aligned_cols=91 Identities=32% Similarity=0.564 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 27 RSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 27 ~~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
.+..|.+..+.++|||+|||.++++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|.|
T Consensus 3 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g 81 (196)
T 1l3k_A 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDG 81 (196)
T ss_dssp -----CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETT
T ss_pred cccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECC
Confidence 34556677788999999999999999999999999999999999999899999999999999999999998 59999999
Q ss_pred eeeEEeecccCC
Q 028972 107 RLITVEKAKRSR 118 (201)
Q Consensus 107 ~~i~V~~a~~~~ 118 (201)
+.|.|.++....
T Consensus 82 ~~l~v~~~~~~~ 93 (196)
T 1l3k_A 82 RVVEPKRAVSRE 93 (196)
T ss_dssp EECEEEECCC--
T ss_pred EEeeeecccCcc
Confidence 999999987654
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=6e-19 Score=137.32 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=81.6
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
.+..+|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 028972 115 KRSRGRT 121 (201)
Q Consensus 115 ~~~~~~~ 121 (201)
..+....
T Consensus 203 ~~~~~~~ 209 (216)
T 2qfj_A 203 VTPPMPL 209 (216)
T ss_dssp SSCSSTT
T ss_pred cCCCCCC
Confidence 8875433
No 148
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=126.41 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..++|||+|||..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.||+.|||..|+|+.|.|+||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998874 35799999999999999999999999999999999998
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 654
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=2.8e-19 Score=132.67 Aligned_cols=84 Identities=25% Similarity=0.392 Sum_probs=76.7
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 30 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 30 ~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
.+....+.++|||+|||+++++++|.++|++||.|..|.|+.+ ++|||||+|.+.++|+.||+.|||..|+|+.|
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3455667889999999999999999999999999999999875 46899999999999999999999999999999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|.++.++.
T Consensus 141 ~v~~a~~~~ 149 (150)
T 2i2y_A 141 RVELSNGEK 149 (150)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.1e-19 Score=131.16 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCee--EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVT--ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
......+|||+|||+++|+++|+++|++| .|. .|.|+.++. |.++|||||+|++.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567789999999999999999999999 676 899998886 9999999999999999999999 578999999999
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9888643
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=8.6e-19 Score=130.81 Aligned_cols=83 Identities=31% Similarity=0.491 Sum_probs=78.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+.++|||+|||.++++++|.++|++||+|..|.++.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=6.5e-19 Score=131.88 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=79.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+.++|||+|||.++++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 664
No 153
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=2.3e-18 Score=123.90 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCCe--EEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--eee
Q 028972 35 NPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGF-AFVTMETVEGADRCIKYLNRSVLEG--RLI 109 (201)
Q Consensus 35 ~~~~~--l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~al~~l~g~~l~g--~~i 109 (201)
+++.+ |||+||++.+++++|.++|++||+|..|.|+.. .|| |||+|++.++|++||+.|||..|.| ..|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 34444 679999999999999999999999999998652 276 9999999999999999999999987 589
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|++|+++.
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999998764
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=9.5e-19 Score=134.24 Aligned_cols=89 Identities=24% Similarity=0.402 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 31 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 31 p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
+....+..+|||+|||.++++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+. ++..|+|+.|.
T Consensus 98 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 33445678999999999999999999999999999999999988999999999999999999999985 89999999999
Q ss_pred EeecccCCCC
Q 028972 111 VEKAKRSRGR 120 (201)
Q Consensus 111 V~~a~~~~~~ 120 (201)
|.+|.++...
T Consensus 177 v~~a~~k~~~ 186 (196)
T 1l3k_A 177 VRKALSKQEM 186 (196)
T ss_dssp EEECC-----
T ss_pred EEecCChhHh
Confidence 9999887643
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=130.37 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCe----eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKV----TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i----~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
....+|||+|||+++|+++|+++|++||.| ..|.|+.++ ++.++|||||+|++.++|++||+. |++.|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456799999999999999999999999975 689998885 899999999999999999999994 99999999999
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887643
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=6.5e-19 Score=119.25 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=70.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
..++|||+|||+++++++|+++|++| +|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 467899999999999999999999999999999999987
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.78 E-value=1.6e-18 Score=133.23 Aligned_cols=85 Identities=22% Similarity=0.382 Sum_probs=80.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36778999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCC
Q 028972 114 AKRSR 118 (201)
Q Consensus 114 a~~~~ 118 (201)
|.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=1.5e-18 Score=130.42 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
....+|||+|||..+++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 028972 115 K 115 (201)
Q Consensus 115 ~ 115 (201)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=116.87 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCCCe-EEEeCCCCCCcHHH----HHHHHcCC-CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee
Q 028972 35 NPGNN-LYVTGLSTRVTNAD----LEKFFGGE-GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 108 (201)
Q Consensus 35 ~~~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~ 108 (201)
+|..+ |||+|||+.+++++ |.++|++| |+|..| ++ |+|||+|.+.++|+.|++.|||..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44555 99999999999887 55899999 599888 33 89999999999999999999999999999
Q ss_pred eEEeecccCCCC
Q 028972 109 ITVEKAKRSRGR 120 (201)
Q Consensus 109 i~V~~a~~~~~~ 120 (201)
|.|++|+.+.+-
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999987643
No 160
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.77 E-value=1.8e-18 Score=124.13 Aligned_cols=80 Identities=30% Similarity=0.376 Sum_probs=71.4
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...+.++|||+|| ++++++|+++|++||+|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999996 69999999999999999999886 356899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 028972 113 KAKRSRGR 120 (201)
Q Consensus 113 ~a~~~~~~ 120 (201)
++.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99887543
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.9e-18 Score=117.36 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=62.8
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeee
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV--LEGRLI 109 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~--l~g~~i 109 (201)
....+.++|||+|||+++++++|+++|++||+|..|.|+.+ ++|||||+|++.++|++ |++.. +.|..|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 45677889999999999999999999999999999998864 67999999999999983 55555 469999
Q ss_pred EEeecccCC
Q 028972 110 TVEKAKRSR 118 (201)
Q Consensus 110 ~V~~a~~~~ 118 (201)
.|.+|.++.
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999998764
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=1.4e-18 Score=130.31 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eeeEEee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG--RLITVEK 113 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g--~~i~V~~ 113 (201)
...+|||+||++.+++++|+++|++||+|..|.|+... .+|||||+|++.++|++|++.|||..|.| ..|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34468999999999999999999999999999986532 46899999999999999999999999965 9999999
Q ss_pred cccCC
Q 028972 114 AKRSR 118 (201)
Q Consensus 114 a~~~~ 118 (201)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98763
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=3e-18 Score=124.01 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=68.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--eeeEEeec
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGF-AFVTMETVEGADRCIKYLNRSVLEG--RLITVEKA 114 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~al~~l~g~~l~g--~~i~V~~a 114 (201)
..|||+||++.+|+++|.++|++||+|..|.|+... +|| |||+|.+.++|++|++.|||..|.| ..|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 457799999999999999999999999999887542 477 9999999999999999999999988 89999999
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
+.+.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=6.5e-18 Score=126.38 Aligned_cols=81 Identities=32% Similarity=0.491 Sum_probs=76.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eeeEE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG--RLITV 111 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g--~~i~V 111 (201)
..+..+|||+|||..+++++|.++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.| .+|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999988 99999
Q ss_pred eec
Q 028972 112 EKA 114 (201)
Q Consensus 112 ~~a 114 (201)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=2.8e-18 Score=134.23 Aligned_cols=81 Identities=30% Similarity=0.508 Sum_probs=74.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
...+|||+|||..+++++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||+.|+|+.|.|.+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999874 4478999999999999999999999999999999999997
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 653
No 166
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=120.15 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=67.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT---RESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
...++|||+|||+++++++|+++|++||+|. +.++.+..+ |.++|||||+|++.++|++||+.|+ .|+|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567899999999999999999999999999 888877766 7999999999999999999999884 367776666
Q ss_pred eeccc
Q 028972 112 EKAKR 116 (201)
Q Consensus 112 ~~a~~ 116 (201)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 55443
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=123.77 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=71.1
Q ss_pred CeEEEeCC----CCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCCe
Q 028972 38 NNLYVTGL----STRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEG----ADRCIK--YLNRSV 103 (201)
Q Consensus 38 ~~l~V~nL----p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----a~~al~--~l~g~~ 103 (201)
+.|||+|| |+.+++++|+++|++||+|..|.++.|+.||.++|||||+|.+ +++ |.+||. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 323 888888 789999
Q ss_pred eCCeeeEEeecc
Q 028972 104 LEGRLITVEKAK 115 (201)
Q Consensus 104 l~g~~i~V~~a~ 115 (201)
|+|..|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=1.2e-18 Score=130.41 Aligned_cols=81 Identities=26% Similarity=0.487 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+..+|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ |++..|+|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45689999999999999999999999999999999998899999999999999999999998 99999999999999998
Q ss_pred cC
Q 028972 116 RS 117 (201)
Q Consensus 116 ~~ 117 (201)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 169
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=117.01 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=66.5
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
.+.++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|++.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45689999999999999999999999999999998754 578999999999999865331 34568999999999
Q ss_pred ccCCC
Q 028972 115 KRSRG 119 (201)
Q Consensus 115 ~~~~~ 119 (201)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87753
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=5.9e-18 Score=132.01 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCC-CCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 35 NPGNNLYVTGLS-TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 35 ~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
.++++|||+||| ..+++++|.++|++||.|..|.|+.+ .+|||||+|.+.++|+.||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 89999999999999999999999865 258999999999999999999999999999999999
Q ss_pred cccCC
Q 028972 114 AKRSR 118 (201)
Q Consensus 114 a~~~~ 118 (201)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97654
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=7.9e-18 Score=125.43 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
.+|||+|||.++++++|.++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999887 5778999999999999999999999999999999999998766
Q ss_pred C
Q 028972 118 R 118 (201)
Q Consensus 118 ~ 118 (201)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=5.5e-18 Score=131.87 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 113 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~ 113 (201)
..+.++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34567999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred cccC
Q 028972 114 AKRS 117 (201)
Q Consensus 114 a~~~ 117 (201)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7654
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1e-17 Score=124.90 Aligned_cols=81 Identities=32% Similarity=0.466 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCee--eEE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL--ITV 111 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~--i~V 111 (201)
..+..+|||+|||..+++++|.++|++||.|..|.++.+..++.++|||||+|.+.++|++|++.|||..|.|.. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345678999999999999999999999999999999999889999999999999999999999999999999964 888
Q ss_pred eec
Q 028972 112 EKA 114 (201)
Q Consensus 112 ~~a 114 (201)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=1.5e-17 Score=116.44 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=73.4
Q ss_pred CCCCCeEEEeCCCC-----CCcHHHHHHHHcCCCCeeEEEEeeCCCC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 34 ANPGNNLYVTGLST-----RVTNADLEKFFGGEGKVTECHLVTDPRT-RESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 34 ~~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
..++.+|+|.||.. +.++++|+++|++||+|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35778999999963 2368999999999999999999987654 68899999999999999999999999999999
Q ss_pred eeEEeeccc
Q 028972 108 LITVEKAKR 116 (201)
Q Consensus 108 ~i~V~~a~~ 116 (201)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=6.3e-18 Score=113.69 Aligned_cols=73 Identities=19% Similarity=0.479 Sum_probs=66.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCC----C-------CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGE----G-------KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
..+..+|||+|||.++++++|+++|++| | +|..|.+..+ +|||||+|.+.++|++|| .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3457799999999999999999999999 8 8999988754 489999999999999999 89999
Q ss_pred eeCCeeeEEee
Q 028972 103 VLEGRLITVEK 113 (201)
Q Consensus 103 ~l~g~~i~V~~ 113 (201)
.|+|+.|.|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999874
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.5e-17 Score=125.03 Aligned_cols=81 Identities=27% Similarity=0.416 Sum_probs=74.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeeeE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE---GRLIT 110 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~---g~~i~ 110 (201)
..+..+|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467799999999999999999999999999999999886 6899999999999999999999999998776 48999
Q ss_pred Eeecc
Q 028972 111 VEKAK 115 (201)
Q Consensus 111 V~~a~ 115 (201)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.73 E-value=1.4e-17 Score=125.62 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...+..+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988766 4478899999999999999999999999999999999999
Q ss_pred ecccC
Q 028972 113 KAKRS 117 (201)
Q Consensus 113 ~a~~~ 117 (201)
+|.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99875
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=2.8e-17 Score=123.55 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCC--CcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeeeE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTR--ESCGFAFVTMETVEGADRCIKYLNRSVLE---GRLIT 110 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~al~~l~g~~l~---g~~i~ 110 (201)
..++|||+|||+++++++|.++|++||+|..|.|+.++.++ .++|||||+|.+.++|++||+.||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45689999999999999999999999999999999998776 89999999999999999999999998875 67888
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877654
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=3.3e-17 Score=132.89 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHH----HHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
....+.++|||+|||.++++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345678899999999999999966 8999999999998875 678899999999999999999999999999999
Q ss_pred eeEEeecccCC
Q 028972 108 LITVEKAKRSR 118 (201)
Q Consensus 108 ~i~V~~a~~~~ 118 (201)
.|.|.+++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997654
No 180
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-16 Score=111.85 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEeCCCCCCc-----------HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 32 DAANPGNNLYVTGLSTRVT-----------NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
....+..+|+|.||..... +++|+++|++||+|..|.| .++ .++|||||+|.+.++|++||+.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456788999999954332 5899999999999999966 443 378999999999999999999999
Q ss_pred CCeeCCeeeEEeecccCC
Q 028972 101 RSVLEGRLITVEKAKRSR 118 (201)
Q Consensus 101 g~~l~g~~i~V~~a~~~~ 118 (201)
|..|+|+.|.|.++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999998764
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=6e-17 Score=125.19 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
.++|||+|||.++++++|+++|++||+|..|.|+.+. ++.++|||||+|++.++|++||+.+ +..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5789999999999999999999999999999999886 5889999999999999999999855 5689999999998765
Q ss_pred C
Q 028972 117 S 117 (201)
Q Consensus 117 ~ 117 (201)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.9e-17 Score=123.76 Aligned_cols=80 Identities=29% Similarity=0.586 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+.++|||+|||.++++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+. ++.|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999984 678999999998876
Q ss_pred cC
Q 028972 116 RS 117 (201)
Q Consensus 116 ~~ 117 (201)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=3.3e-17 Score=130.20 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCCCC---------cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 34 ANPGNNLYVTGLSTRV---------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
.....+|||+||+..+ ++++|.++|++||+|..|.|+.. +|||||+|.+.++|+.||+.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999853 58999999999999999999999999
Q ss_pred ------------CCeeeEEeecccCC
Q 028972 105 ------------EGRLITVEKAKRSR 118 (201)
Q Consensus 105 ------------~g~~i~V~~a~~~~ 118 (201)
.|..|.|.||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998764
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=3.9e-17 Score=133.07 Aligned_cols=84 Identities=26% Similarity=0.408 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCCCC-CcHHHHHHHHcCCCCeeEEEEeeCCC-CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 33 AANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPR-TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
...+..+|||+|||.. +++++|.++|++||.|..|.|+.+.. |+.++|||||+|.+.++|.+|| .|||..|+|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4567789999999999 99999999999999999999998775 5899999999999999999999 9999999999999
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
|.+|.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999876
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=5.7e-17 Score=128.09 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 33 AANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
..+++++|||+|||. ++++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998764 579999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.++....
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998664
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=1.5e-16 Score=129.06 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeCCCCCC-cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 33 AANPGNNLYVTGLSTRV-TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
...+..+|||+|||..+ ++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999999887 7899999999999999999999999999999999999
Q ss_pred eecccCC
Q 028972 112 EKAKRSR 118 (201)
Q Consensus 112 ~~a~~~~ 118 (201)
.++.++.
T Consensus 259 ~~a~~~~ 265 (284)
T 3smz_A 259 SFCAPGP 265 (284)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9998765
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.4e-16 Score=129.21 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeeeEE
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITV 111 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~-g~~i~V 111 (201)
...+.++|||+|||..+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.|||..|. |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999998654 479999999999999999999999999 999999
Q ss_pred eeccc
Q 028972 112 EKAKR 116 (201)
Q Consensus 112 ~~a~~ 116 (201)
.||+.
T Consensus 278 ~~akk 282 (282)
T 3pgw_A 278 SFAKK 282 (282)
T ss_pred EEecC
Confidence 99863
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=2.2e-16 Score=128.13 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
++..+|||+|||..+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
....
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 8764
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=121.84 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=71.9
Q ss_pred CCeEEEeCCCC-CCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecc
Q 028972 37 GNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 115 (201)
Q Consensus 37 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~ 115 (201)
+++|||+|||. .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 5799999999999999999999999999999999998
Q ss_pred cCC
Q 028972 116 RSR 118 (201)
Q Consensus 116 ~~~ 118 (201)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 664
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.2e-16 Score=124.48 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCe--eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe----
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKV--TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR---- 107 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~---- 107 (201)
.+++.+|||+|||+++++++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||+.|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3567899999999999999999999999999 888887764 45569999999999999999999999999886
Q ss_pred eeEEeec
Q 028972 108 LITVEKA 114 (201)
Q Consensus 108 ~i~V~~a 114 (201)
++.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5777665
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=4.1e-16 Score=109.04 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=70.9
Q ss_pred CCCCeEEEeCC--CCCCc--------HHHHHHHHcCCCCeeEEEEeeCCCC--CCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 35 NPGNNLYVTGL--STRVT--------NADLEKFFGGEGKVTECHLVTDPRT--RESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 35 ~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.|+..|.|.|+ |.++. +++|+++|++||+|..|.|+.+..+ +.++|||||+|++.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778999998 33332 3789999999999999999887654 367899999999999999999999999
Q ss_pred eeCCeeeEEeeccc
Q 028972 103 VLEGRLITVEKAKR 116 (201)
Q Consensus 103 ~l~g~~i~V~~a~~ 116 (201)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=4.3e-17 Score=122.99 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
...+.++|||+|||.++++++|+++|.+||.|..+ ++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 45677899999999999999999999999987652 23333477889999999999999999995 99999999999999
Q ss_pred ecccCC
Q 028972 113 KAKRSR 118 (201)
Q Consensus 113 ~a~~~~ 118 (201)
++..+.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998764
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=120.96 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=72.4
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeeeEE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITV 111 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~-g~~i~V 111 (201)
.++..+|||+|||..+++++|.++|++|| .|..|.|+.+. +|||||+|.+.++|.+||+.|||..|+ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45688999999999999999999999999 99999986532 589999999999999999999999999 999999
Q ss_pred eecccC
Q 028972 112 EKAKRS 117 (201)
Q Consensus 112 ~~a~~~ 117 (201)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=4.8e-16 Score=125.15 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
....+.++|||+|||.++|+++|.++|++||.|..|.|..+ +|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34456679999999999999999999999999999998654 489999999999999999999999999999999
Q ss_pred eeccc
Q 028972 112 EKAKR 116 (201)
Q Consensus 112 ~~a~~ 116 (201)
.++.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99865
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=8.9e-16 Score=121.22 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeeeEE
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITV 111 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~-g~~i~V 111 (201)
.++..+|||+|||..+++++|+++|++|| +|..|.|+.. .+|||||+|.+.++|++||+.|||..|+ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45678999999999999999999999999 9999998653 2579999999999999999999999999 999999
Q ss_pred eecccC
Q 028972 112 EKAKRS 117 (201)
Q Consensus 112 ~~a~~~ 117 (201)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999764
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.64 E-value=1.3e-15 Score=108.63 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCCCeEEEeCCCC--C---CcHHHHHHHHcCCCCeeEEEEeeCCC----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 028972 35 NPGNNLYVTGLST--R---VTNADLEKFFGGEGKVTECHLVTDPR----TRESCGFAFVTMETVEGADRCIKYLNRSVLE 105 (201)
Q Consensus 35 ~~~~~l~V~nLp~--~---~t~~~L~~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~a~~al~~l~g~~l~ 105 (201)
+++.+|+|.|+-. + -.+++|+++|++||+|..|.|+.+.. ++..+|||||+|.+.++|++|++.|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999842 2 23689999999999999999998754 4567899999999999999999999999999
Q ss_pred CeeeEEeeccc
Q 028972 106 GRLITVEKAKR 116 (201)
Q Consensus 106 g~~i~V~~a~~ 116 (201)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999754
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-15 Score=102.50 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCeEEEeCCC-------CCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 37 GNNLYVTGLS-------TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 37 ~~~l~V~nLp-------~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
...|.|.-.. ..+++++|+++|++||+|..|.|+ +.++|||||+|++.++|+.||+.+++ +.+++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4566666543 458999999999999999999987 35789999999999999999997554 689999
Q ss_pred EEeecccCCCCC
Q 028972 110 TVEKAKRSRGRT 121 (201)
Q Consensus 110 ~V~~a~~~~~~~ 121 (201)
.|.|++.+....
T Consensus 83 ~V~~a~~~~~~~ 94 (100)
T 2d9o_A 83 KISWLEGQPQDA 94 (100)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999998775433
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.4e-15 Score=122.38 Aligned_cols=83 Identities=27% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC-CCeeC---CeeeEE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN-RSVLE---GRLITV 111 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~-g~~l~---g~~i~V 111 (201)
+..+|||+|||..+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46799999999999999999999999999999999984 89999999999999999999999994 45554 899999
Q ss_pred eecccCCC
Q 028972 112 EKAKRSRG 119 (201)
Q Consensus 112 ~~a~~~~~ 119 (201)
.++.....
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99987643
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=2.1e-16 Score=110.37 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=63.6
Q ss_pred EeCCCCCCcHHHHHHHH------------cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeee
Q 028972 42 VTGLSTRVTNADLEKFF------------GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 109 (201)
Q Consensus 42 V~nLp~~~t~~~L~~~F------------~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i 109 (201)
+.||+..+++++|+++| ++||+|..|.|+.+. ++.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777877777666 999999999999876 47899999999999999999999999999999999
Q ss_pred EEeec
Q 028972 110 TVEKA 114 (201)
Q Consensus 110 ~V~~a 114 (201)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.1e-15 Score=124.33 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeec
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 114 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a 114 (201)
...+|||+|||..+++++|.++|.+|| .|..|.|+.++. +.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467999999999999999999999999 999999988774 788999999999999999999999999999999999998
Q ss_pred ccCC
Q 028972 115 KRSR 118 (201)
Q Consensus 115 ~~~~ 118 (201)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 8664
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=2.7e-15 Score=112.50 Aligned_cols=76 Identities=18% Similarity=0.464 Sum_probs=67.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCC----C-------CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGE----G-------KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
+.++|||+|||.++++++|.++|++| | .|..+.+... +|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 6777766543 589999999999999999 7999999
Q ss_pred CCeeeEEeecccCC
Q 028972 105 EGRLITVEKAKRSR 118 (201)
Q Consensus 105 ~g~~i~V~~a~~~~ 118 (201)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999876653
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=4.8e-15 Score=113.61 Aligned_cols=76 Identities=17% Similarity=0.441 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCC----C-------CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGE----G-------KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
..++|||+|||.++++++|.++|++| | .|..+.+. ..+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 55555553 34689999999999999999 7999999
Q ss_pred CCeeeEEeecccCC
Q 028972 105 EGRLITVEKAKRSR 118 (201)
Q Consensus 105 ~g~~i~V~~a~~~~ 118 (201)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=5.8e-15 Score=123.07 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=65.5
Q ss_pred CCCCCeEEEeC--CCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---Ce-
Q 028972 34 ANPGNNLYVTG--LSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE---GR- 107 (201)
Q Consensus 34 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~---g~- 107 (201)
..|+.+|||+| |+..+|+++|+++|++||+|..|.|.. .+|||||+|++.++|++||+.|||+++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56788999999 578999999999999999999987753 3589999999999999999999999873 34
Q ss_pred -eeEEeecc
Q 028972 108 -LITVEKAK 115 (201)
Q Consensus 108 -~i~V~~a~ 115 (201)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=5.8e-14 Score=99.45 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCCCeEEEeCCCCCC----------cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 34 ANPGNNLYVTGLSTRV----------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
+.++..|.|.|+=... .+++|+++|++||.|..|.|..+. .+|||||+|.+.++|++|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567788999873221 146889999999999999886542 47999999999999999999999999
Q ss_pred eCCeeeEEeeccc
Q 028972 104 LEGRLITVEKAKR 116 (201)
Q Consensus 104 l~g~~i~V~~a~~ 116 (201)
|+|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-13 Score=97.54 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCCCCCCCCCeEEEeCCCCC-CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CCee
Q 028972 29 RSPDAANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET-VEGADRCIKYLN--RSVL 104 (201)
Q Consensus 29 ~~p~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~al~~l~--g~~l 104 (201)
+..-+.++++.|||+||+.. ++.++|+++|++||+|..|.|+.+.. .|||.|.+ +++|+.|+..|| +.+|
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 34456788999999999999 99999999999999999999988764 79999999 899999999994 7789
Q ss_pred CCeeeEEeecc
Q 028972 105 EGRLITVEKAK 115 (201)
Q Consensus 105 ~g~~i~V~~a~ 115 (201)
+|..++++...
T Consensus 84 ~g~~~~~evL~ 94 (121)
T 1owx_A 84 RNKEVTWEVLE 94 (121)
T ss_dssp TSSSEEEEECC
T ss_pred eCcEEEEEECC
Confidence 99988887653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=88.25 Aligned_cols=75 Identities=25% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCCCeEEEeCCCC----CCcH----HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 35 NPGNNLYVTGLST----RVTN----ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 35 ~~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
+|..+|+|..++. +.-. .+|.+.|.+||+|..+.|+.+ .+||+|.+.+.|.+||+ |||..|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 5666888877762 2222 678999999999999999876 48999999999999999 99999999
Q ss_pred eeeEEeecccCC
Q 028972 107 RLITVEKAKRSR 118 (201)
Q Consensus 107 ~~i~V~~a~~~~ 118 (201)
+.|+|+++.+..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999988764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.2e-11 Score=82.19 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=61.8
Q ss_pred CCCCCeEEEeCCCCC------CcH---HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 34 ANPGNNLYVTGLSTR------VTN---ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~------~t~---~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
-+|..+|+|..++.. ..+ .+|.+.|.+||+|..+.|+.+ -+||+|.+.+.|.+||+ |||..|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeee
Confidence 466778999888642 221 568999999999999999876 39999999999999999 999999
Q ss_pred CCeeeEEeecc
Q 028972 105 EGRLITVEKAK 115 (201)
Q Consensus 105 ~g~~i~V~~a~ 115 (201)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.18 E-value=2e-10 Score=89.92 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=60.4
Q ss_pred CcHHHHHHHHcCCCCeeEEEEeeCC----CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 49 VTNADLEKFFGGEGKVTECHLVTDP----RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 49 ~t~~~L~~~F~~~G~i~~v~i~~~~----~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
-.+++|.+.|.+||+|..|.|+.+. .++..+|++||+|.+.++|++||+.|||..|+|+.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3468899999999999999998543 3458899999999999999999999999999999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.1e-09 Score=72.16 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCC-----CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGE-----GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
...+|-|-|||..++...|..+++.+ |.|..|.+..+. +-|+|+|.+...|.+|.-.|+|.+|.|+.|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45678899999999999999999999 999999998876 4799999999999999988999999999999
Q ss_pred Eeec
Q 028972 111 VEKA 114 (201)
Q Consensus 111 V~~a 114 (201)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=6.4e-07 Score=61.32 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=63.8
Q ss_pred CCeEEEeCCCCCC-c----HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEE
Q 028972 37 GNNLYVTGLSTRV-T----NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 111 (201)
Q Consensus 37 ~~~l~V~nLp~~~-t----~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V 111 (201)
.++|+|.||+.++ . .+.++++|..|+++....+++.- .-..|.|.++++|.+|-..||+..|+|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4589999998765 2 25789999999999888776543 26899999999999999999999999999999
Q ss_pred eecccC
Q 028972 112 EKAKRS 117 (201)
Q Consensus 112 ~~a~~~ 117 (201)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999844
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.41 E-value=3.4e-06 Score=56.67 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=63.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCeeCCe-----eeE
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRE--SCGFAFVTMETVEGADRCIKYLNRSVLEGR-----LIT 110 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~al~~l~g~~l~g~-----~i~ 110 (201)
++|.|.+||+.+||+++.+.+..+.++....++..+.+.+ ...-|||.|.+.+++....+.++|+.|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998887777766654432 235699999999999999999999987432 345
Q ss_pred EeecccC
Q 028972 111 VEKAKRS 117 (201)
Q Consensus 111 V~~a~~~ 117 (201)
|++|.-+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6776543
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=7.2e-06 Score=55.90 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=61.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCC-----CCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeE
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGE-----GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 110 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~ 110 (201)
...+|.|.|||..+.++.|+-+|+.- |+|..|.... +-|+|+|.+.+.|+.+|+ -..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 46789999999999999999999872 5888887754 379999999999999987 347789999999
Q ss_pred EeecccCC
Q 028972 111 VEKAKRSR 118 (201)
Q Consensus 111 V~~a~~~~ 118 (201)
|....+..
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 97755543
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=4.6e-06 Score=58.57 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-eeeE
Q 028972 32 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG-RLIT 110 (201)
Q Consensus 32 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g-~~i~ 110 (201)
+.....+.|.|.++|... ...|...|++||+|........ ..+..|.|.+..+|++||. .||..|+| -.|-
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIG 90 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIG 90 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEE
Confidence 344556789999999885 4567778999999998876321 2499999999999999999 89999985 6677
Q ss_pred Eeec
Q 028972 111 VEKA 114 (201)
Q Consensus 111 V~~a 114 (201)
|...
T Consensus 91 V~p~ 94 (119)
T 1wwh_A 91 VKPC 94 (119)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7664
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.07 E-value=1.7e-05 Score=53.51 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=45.6
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.+.++| ++|.++...||.++|..||.| .|.++.+. .|||.|.+++.|..||..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344555 999999999999999999954 46666553 89999999999999999763
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.99 E-value=1.7e-05 Score=53.59 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=58.4
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCeeCC-----ee
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRE--SCGFAFVTMETVEGADRCIKYLNRSVLEG-----RL 108 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~al~~l~g~~l~g-----~~ 108 (201)
-.-+|.|..||+.+||+++.+.+..+-++....++..+.+.+ ...-|||.|.+.+++....+.++|+.|-+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 345899999999999999888887765554444433332222 22468999999999999999999998743 24
Q ss_pred eEEeeccc
Q 028972 109 ITVEKAKR 116 (201)
Q Consensus 109 i~V~~a~~ 116 (201)
..|++|.-
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 45677643
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.91 E-value=1.8e-05 Score=53.53 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=45.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
+.++| ++|.++...||.++|+.||. ..|.++.+. .|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 356666553 89999999999999999774
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.84 E-value=2.2e-05 Score=55.84 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=56.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeE-EEEee------------CCCCC-CcccEEEEEEcCHHHHHHHHHHhCC
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVT------------DPRTR-ESCGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~------------~~~~~-~~~g~afV~f~~~~~a~~al~~l~g 101 (201)
....|.|.+.|...+.. |.+.|++||.|.+ +.+.. .+... ....+..|.|++..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34578899998877655 5567999999866 22111 00000 124588999999999999999 899
Q ss_pred CeeCCeeeEEeecc
Q 028972 102 SVLEGRLITVEKAK 115 (201)
Q Consensus 102 ~~l~g~~i~V~~a~ 115 (201)
.+|+|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887754
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.95 E-value=0.0004 Score=59.74 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
...|||. +|..+++.+|.++|++||+|..+.+-.++. -||+|||.+.+.|.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 4579997 799999999999999999999998876542 599999999999987765
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.93 E-value=0.00049 Score=49.90 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeeeEEeecccC
Q 028972 75 TRESCGFAFVTMETVEGADRCIKYL-NRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 75 ~~~~~g~afV~f~~~~~a~~al~~l-~g~~l~g~~i~V~~a~~~ 117 (201)
....+|+++|+|.+.++|++||+.| ||..|+| .|.|.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999988753
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.85 E-value=0.00093 Score=48.69 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=28.5
Q ss_pred EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 66 ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 66 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
.+.|+.+. ...+|||||+|.+.++|++||+.+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 35555553 3688999999999999999998887643
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.74 E-value=0.079 Score=46.11 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=45.4
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
...++|+ +|..+...+|.++|+.||.| .|.++.+. .|||.|.+.+.|..++..+...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHhC
Confidence 3456665 88888999999999999954 55555442 8999999999999999988543
No 222
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.71 E-value=0.63 Score=30.64 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC-------eeC
Q 028972 33 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS-------VLE 105 (201)
Q Consensus 33 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-------~l~ 105 (201)
....++-|-|-|||..+-..++.-.....|---.|..+. |-|.|.|.+.++...||+.|-++ +|.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 446678889999999998888877778888766777653 47999999999999999887332 245
Q ss_pred CeeeEEe
Q 028972 106 GRLITVE 112 (201)
Q Consensus 106 g~~i~V~ 112 (201)
|+.+.|-
T Consensus 80 gqicdvi 86 (129)
T 4eyt_A 80 GQICDVI 86 (129)
T ss_dssp TEEEEEE
T ss_pred ceeeeee
Confidence 6655553
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.04 E-value=0.27 Score=30.97 Aligned_cols=68 Identities=15% Similarity=0.335 Sum_probs=42.3
Q ss_pred eEEEe-CCCCCCcHHHHHHHHcCCC-----CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEe
Q 028972 39 NLYVT-GLSTRVTNADLEKFFGGEG-----KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 112 (201)
Q Consensus 39 ~l~V~-nLp~~~t~~~L~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~ 112 (201)
+|||. +--..+...+|..++..-+ .|-.|.|..+ |.||+... +.|..+++.|++..+.|+.|.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 46663 2234566677777776543 3456666432 89998864 56788888899999999999988
Q ss_pred ecc
Q 028972 113 KAK 115 (201)
Q Consensus 113 ~a~ 115 (201)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=83.67 E-value=5.7 Score=29.27 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=38.2
Q ss_pred CeEEEeCCCC-C--------CcHHHHHHHH--cCCCCeeEEEEeeCCCCCCcccEEEEEEcC-HHHHHHHHH
Q 028972 38 NNLYVTGLST-R--------VTNADLEKFF--GGEGKVTECHLVTDPRTRESCGFAFVTMET-VEGADRCIK 97 (201)
Q Consensus 38 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~al~ 97 (201)
.++.|-|+|. . ....+|.+.| ..|.++. |..+..+ .-+.|+|+|+|.. ......|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4677889987 2 3347899977 9998765 4444443 2367899999974 455555554
No 225
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=77.80 E-value=9.1 Score=32.36 Aligned_cols=10 Identities=20% Similarity=0.072 Sum_probs=4.5
Q ss_pred CHHHHHHHHH
Q 028972 88 TVEGADRCIK 97 (201)
Q Consensus 88 ~~~~a~~al~ 97 (201)
+.+++..++.
T Consensus 115 te~~L~~~F~ 124 (437)
T 3pgw_S 115 TESKLRREFE 124 (437)
T ss_pred CHHHHHHHHH
Confidence 3444444444
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=75.82 E-value=8.1 Score=23.17 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=41.3
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.+|.|.++.-..-...|+..+.+ ..|..+.+.... +-+.|+|.+.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHHc
Confidence 46888899877778889999988 778877775432 46788888667777777743
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=70.54 E-value=9.8 Score=24.74 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=26.7
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 63 KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 63 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
+|..|.++.. ..||.||++...+++..+|..+.|..
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCce
Confidence 3555555432 57899999999999888888777653
No 228
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.58 E-value=17 Score=23.46 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=38.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
..|+..+...++..+|++.+++ |+ .|..|..+..+. + ..-|||.+..-.+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 3566677889999999988887 55 666776554431 1 2359999987766666544
No 229
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=63.08 E-value=18 Score=24.11 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHcC-CC---CeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 47 TRVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 47 ~~~t~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
.+++..+|++.+.+ |+ .+..| .|......+++.|||.| |++.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45566777666553 43 33333 45555556788888876 77777776653
No 230
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=62.04 E-value=20 Score=23.97 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHcC-CC---CeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHH
Q 028972 47 TRVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADR 94 (201)
Q Consensus 47 ~~~t~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 94 (201)
.+++..+|++.+.+ |+ .+..| .|......+++.|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45566777665543 33 33333 45555566788888876 777777755
No 231
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=61.84 E-value=22 Score=20.93 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=40.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
+|.|.++.-..-...|+..+.+...|..+.+.... +-+.|+|. +.++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 57788887766678899999998778887776543 47889885 456777777754
No 232
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=61.03 E-value=22 Score=23.95 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHcC-CC---CeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 48 RVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 48 ~~t~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
+++..+|.+.+.+ |+ .+..| .|......+++.|||.| |++.+.|++.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4556666655543 33 23333 44455556788888876 7888777654
No 233
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=65.07 E-value=1.8 Score=29.36 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEE--EEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 36 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFA--FVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 36 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~a--fV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
...+|-|..+ ..+++|..|..+.+ +..+.+......|+. .|. +-.|.+.++|.+|+..|....-...
T Consensus 24 ~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~~ 92 (106)
T 2lfv_A 24 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQAKN 92 (106)
Confidence 3455555444 34566777777776 444555443222322 233 3478999999999998876543333
No 234
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=60.44 E-value=23 Score=23.59 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=43.9
Q ss_pred EeCCCCCCcHHHHHHHH-cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeecccC
Q 028972 42 VTGLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 117 (201)
Q Consensus 42 V~nLp~~~t~~~L~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~~ 117 (201)
|-.++..+.-++|..-. ..||.-.++.+. +. -+.|-..+.++..+||+.|+-.. .-+.|+|-...++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 33566777777776544 468887777665 22 47888999999999999876553 3333444444433
No 235
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=59.92 E-value=7.5 Score=34.69 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCCCCCcHHHHHHHHc----CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 44 GLSTRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
.++.+.+--||..+|- .+|-|+.+.|...+ ......+++|.|.+.++|.+|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 4455555567888873 57888888776554 2334557899999999999988766
No 236
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=59.90 E-value=23 Score=20.47 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=39.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc---CHHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME---TVEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~---~~~~a~~al~~ 98 (201)
++.|.++.-..-...|+..+.+...|..+.+.... +-+.|+|. +.++..++|+.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 57788887766678899999998788888776543 36788884 34556666663
No 237
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=57.92 E-value=26 Score=20.62 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 35 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 35 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
.....+.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 7 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp CEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 334468888988777778899999887777776665432 478888863 45666777654
No 238
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=53.57 E-value=22 Score=23.24 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=38.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEe-eCCCCCCcccEEEEEEc--CHHHHHHHHHHhCC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLV-TDPRTRESCGFAFVTME--TVEGADRCIKYLNR 101 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-~~~~~~~~~g~afV~f~--~~~~a~~al~~l~g 101 (201)
.|.|.-....+.+..|.++..+||--.+|..- .+...+.+-|.-+|++. +.+++++|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 44444444456677777887888743333221 12224556688888887 46777888887743
No 239
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=50.77 E-value=27 Score=24.99 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=35.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
..|+.-+...++..+|++.+++ |+ .|..|..+..+. | ..-|||.+....+|.....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHH
Confidence 3455567778888888877776 44 566666554432 1 2358999976655555443
No 240
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=50.42 E-value=31 Score=19.16 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=36.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc---CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME---TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~---~~~~a~~al~~l 99 (201)
++.|.++.-..-...|+..+.....|..+.+.... +.+.|+|. +.+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 45566776555567788899988778777775442 47788886 345556666644
No 241
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=50.24 E-value=28 Score=24.68 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=35.1
Q ss_pred EEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.|+.-+...++..+|++.+++ |+ .|..|..+..+. + ..-|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHH
Confidence 455567778888888877776 44 566666554432 1 2358999976655555443
No 242
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=48.50 E-value=42 Score=20.19 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=40.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
..+|.|.++.-..-...|+..+.....|..+.+.... +.+.|+|. +.+....+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 3467888887766677799999988888888775442 47888885 345666667644
No 243
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=48.44 E-value=46 Score=20.59 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=39.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
+|.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|. +.+...++|+.+
T Consensus 6 ~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 6 TFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 57788876655567789999988888888776543 47888885 345666777644
No 244
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=48.27 E-value=37 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHcC-CC---CeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 47 TRVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 47 ~~~t~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
.+++..+|.+.+.+ |+ ++..| .|......+.+.|||.| |++.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35566777766654 44 22223 34444455777888887 7777777653
No 245
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=46.20 E-value=44 Score=22.16 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=39.2
Q ss_pred CeEEEeCCCCCCc------HHHHHHHHcC-C---C-----CeeEEEEeeCCCC---CCcccEEEEEEcCHHH---HHHHH
Q 028972 38 NNLYVTGLSTRVT------NADLEKFFGG-E---G-----KVTECHLVTDPRT---RESCGFAFVTMETVEG---ADRCI 96 (201)
Q Consensus 38 ~~l~V~nLp~~~t------~~~L~~~F~~-~---G-----~i~~v~i~~~~~~---~~~~g~afV~f~~~~~---a~~al 96 (201)
+.|.|-+||.... +.-|++++.. | + .|..+.-...+.. ..++ ...|.|....+ ...|.
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPR-hIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCC-EEEEEESCHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCC-eEEEEecccccHHHHHHHH
Confidence 5789999998632 1222333322 2 2 2444433222211 1222 56777766544 44444
Q ss_pred HHhCCCeeCCeeeEEe
Q 028972 97 KYLNRSVLEGRLITVE 112 (201)
Q Consensus 97 ~~l~g~~l~g~~i~V~ 112 (201)
......++.|.+|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 4456677899998875
No 246
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=45.83 E-value=31 Score=22.16 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=35.5
Q ss_pred EEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
.|+..+...++..+|++.+++ |+ .|..|..+..+. ...-|||.+..-.+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHH
Confidence 556677889999999888876 45 666776554432 223699999766554443
No 247
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=45.55 E-value=8.1 Score=30.53 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=25.3
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEe
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLV 70 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 70 (201)
..+.|+|||+.++...|..+++....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865555554443
No 248
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=45.29 E-value=76 Score=22.22 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHcC-CCC---eeEE-EEeeCCCCCCcccEEEEEEcCHHHHHH
Q 028972 48 RVTNADLEKFFGG-EGK---VTEC-HLVTDPRTRESCGFAFVTMETVEGADR 94 (201)
Q Consensus 48 ~~t~~~L~~~F~~-~G~---i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 94 (201)
.++..+|.+.+.+ |+. +..| .|......+...|||.| |++.+.|+.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4667888877754 552 2223 34455556778888887 778777765
No 249
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=45.24 E-value=40 Score=21.76 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=25.4
Q ss_pred HHHHHcCCC-CeeEE---EEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 54 LEKFFGGEG-KVTEC---HLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 54 L~~~F~~~G-~i~~v---~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
...+|.+|| .+.-- .++... .......+|+|.+.+.|.++..
T Consensus 26 ~~~~l~~~GG~~l~rg~~~~lEG~--~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 26 VASTLAKYSGEVLVKGSVEQLHGK--FEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHHTTTCEEEEEEECEEEESC--CCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEcccccccCC--CCCCeEEEEECCCHHHHHHHHC
Confidence 456678886 33211 122111 1234578999999999988864
No 250
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=50.41 E-value=4.7 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.9
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCC
Q 028972 79 CGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 79 ~g~afV~f~~~~~a~~al~~l~g 101 (201)
.|-|.|.|.+.++...|+++|-+
T Consensus 77 egqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 47899999999999888887743
No 251
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=44.36 E-value=20 Score=23.77 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHcC-CC---CeeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 028972 48 RVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADRC 95 (201)
Q Consensus 48 ~~t~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~a 95 (201)
+++..+|.+.+.+ |+ .+..| .|......+++.|||.| |++.+.|++.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4566666655543 33 22222 22333344677778876 6665555543
No 252
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=43.33 E-value=43 Score=18.82 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=37.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC---HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~al~~l 99 (201)
++.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 57788887655567788999888778888776543 478888863 34455566544
No 253
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=43.32 E-value=44 Score=18.89 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=37.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
.|.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE------GTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57788887655567788888888778777775432 477888863 45556666643
No 254
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=43.12 E-value=16 Score=28.77 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEE
Q 028972 37 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHL 69 (201)
Q Consensus 37 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i 69 (201)
...+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356889999999999999999877 55544433
No 255
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.30 E-value=39 Score=24.33 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=34.5
Q ss_pred EEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
.|+..+...++..+|++.+++ |+ .|..|..+..+. + ..-|||.+....+|....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~--~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-G--EKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-S--CEEEEEEECTTSCHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 456667778888888888776 44 666665554432 1 235899987665544443
No 256
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=41.55 E-value=28 Score=28.90 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=39.7
Q ss_pred eEEEeCCCCCC----cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 028972 39 NLYVTGLSTRV----TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 107 (201)
Q Consensus 39 ~l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~ 107 (201)
.-+||||..-. ....+.++..+||.|..+.+.. .-+|...+++.|++++. -++..+.+.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~-~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLI-KKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHT-TTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHH-hCcHhhCCC
Confidence 44688886432 2456778888999998887642 45677789999999885 233334433
No 257
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=41.38 E-value=40 Score=28.68 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCCCCcHHHHHHHHc----CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 45 LSTRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 45 Lp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
+..+.+..+|..+|- .+|-|+.+.+...+. ......+++.|.+.++|.+++..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 334444445655553 457788887765542 333457889999999998888766
No 258
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=41.33 E-value=15 Score=23.61 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHcCC
Q 028972 28 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGE 61 (201)
Q Consensus 28 ~~~p~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 61 (201)
..-|.+.+....|.|.+.+..++.++.++++..|
T Consensus 10 ~~~~s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 10 NNTATTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp ------CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCccccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 3345566777789999999999999999888887
No 259
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.93 E-value=46 Score=18.48 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~ 98 (201)
++.|.++.-..-...|+..+.....|..+.+.... +.+.|+|.. .+....+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK------EKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 57888888777778899999988778777775432 478888863 4555666653
No 260
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=40.89 E-value=71 Score=20.62 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=38.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEee-CCCCCCcccEEEEEEcC-HHHHHHHHHHhC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVT-DPRTRESCGFAFVTMET-VEGADRCIKYLN 100 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~-~~~~~~~~g~afV~f~~-~~~a~~al~~l~ 100 (201)
.|.|.-....+.+..|.++..+||--.+|..-. +...+..-|.-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 455555555666777888888888544432211 22245566788888863 556677777664
No 261
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=40.58 E-value=27 Score=25.07 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=32.7
Q ss_pred EEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
.|+.-+...++..+|++.+++ |+ .|..|..+..+. ...-|||.+....+|....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~---g~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD---GKKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC---CceEEEEEcCCCCcHHHHH
Confidence 445556667787777777765 34 566665554331 1235899887665555543
No 262
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=40.19 E-value=50 Score=18.64 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
.+.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHC
Confidence 56777876555566788888888777777665432 478888863 45566667654
No 263
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.95 E-value=50 Score=21.35 Aligned_cols=53 Identities=6% Similarity=0.080 Sum_probs=34.3
Q ss_pred EEEeCCCCCCcHHHHHHHHcC-CC----CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 40 LYVTGLSTRVTNADLEKFFGG-EG----KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~-~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
|.+..+|..++-++|.+.+.. |+ +...++++-+ .| -+|.+.+.++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHH
Confidence 556677888998877655442 22 3334444433 22 468889999999999844
No 264
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=39.45 E-value=51 Score=18.51 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=37.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC---HHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~al~~ 98 (201)
++.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 57788887666677888888888778887776543 477788864 3555566653
No 265
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=39.39 E-value=30 Score=28.41 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=36.4
Q ss_pred eEEEeCCCCC---CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 39 NLYVTGLSTR---VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 39 ~l~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.-+|||+..- -....+.++..+||.|..+.+. +.-+|.+.+++.++.++.
T Consensus 18 ~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 18 LPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp BTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred cccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 3457887642 2345678888999999777653 256778889999999986
No 266
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=39.38 E-value=70 Score=20.81 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=22.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEe
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLV 70 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~ 70 (201)
..|+..+...++..+|++.+++ |+ .|..|..+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~ 61 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTL 61 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEE
Confidence 3566677888999888888876 45 55555443
No 267
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=39.07 E-value=76 Score=21.19 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=36.9
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
..|.|.++.-..-...|+..+.+.-.|..+.+.... +.+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECCCCCCHHHHHHHHHhC
Confidence 356777776655566778888777667777665432 36778875 346666677654
No 268
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=39.06 E-value=57 Score=18.94 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=37.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
+|.|.++.-..-...|+..+.....|..+.+.... +.+.|.|. +.+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMA------GKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT------TBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57788887666677889999888777766554332 46788885 345566667654
No 269
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=38.69 E-value=53 Score=18.52 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=39.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
.+.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 56777887766677899999988778887775542 478888853 45566666644
No 270
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=38.40 E-value=47 Score=24.95 Aligned_cols=27 Identities=4% Similarity=0.035 Sum_probs=23.0
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
-+||.|||=..+.++.+||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 568999999999999999988777543
No 271
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=38.30 E-value=80 Score=20.43 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=40.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
+|.|.++.-..-...|+..+...-.|..+.+.... +.+.|+|.. .+....+|+.+
T Consensus 11 ~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57788888766778899999988778888776543 478888873 45566666643
No 272
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=38.13 E-value=90 Score=20.95 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=36.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
.|.|.++.-..-...|+..+.+...|..+.+.... +.+.|+|. +.++..++|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL------ETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 46677777666677778878777667666554332 36778876 456666777654
No 273
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.36 E-value=33 Score=20.99 Aligned_cols=66 Identities=6% Similarity=0.020 Sum_probs=40.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 104 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l 104 (201)
......|.|+-+......+.|...+...|--..| ... .+ .--.-+--|.+.++|+.++..|...-+
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~--~~-~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK--DG-LYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE--TT-EEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC--Cc-EEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3455678888887766667777666655633232 211 11 111334478999999999988865333
No 274
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=37.08 E-value=26 Score=30.17 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=28.4
Q ss_pred HHHHHH--cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 028972 53 DLEKFF--GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI 96 (201)
Q Consensus 53 ~L~~~F--~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al 96 (201)
+|..+| ..+|-|+.+.+...+. ......+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 355666 3689899888766542 333446788999877765544
No 275
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=36.50 E-value=26 Score=28.75 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=18.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG 60 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~ 60 (201)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999888887763
No 276
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.34 E-value=4.4 Score=29.03 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc
Q 028972 52 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME 87 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 87 (201)
+||.++|...|.|+-+. . .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeC
Confidence 45666677767654332 1 2479999875
No 277
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=36.25 E-value=90 Score=24.00 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEEEcCHHHHHHHH---HHhCCCeeCCeeeEEee
Q 028972 81 FAFVTMETVEGADRCI---KYLNRSVLEGRLITVEK 113 (201)
Q Consensus 81 ~afV~f~~~~~a~~al---~~l~g~~l~g~~i~V~~ 113 (201)
..+|.|....+-++.| ......++.|.+|.+..
T Consensus 113 ~IIvK~~~~~~KErILkaaR~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 113 HIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTV 148 (233)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTSCEEETTEEEEEEE
T ss_pred eEEEEecccccHHHHHHHHHHhcccccCCCceEEeC
Confidence 5677777655544444 44456778999887754
No 278
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=35.78 E-value=10 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEe
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLV 70 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 70 (201)
...|+|||+.++...|..+++....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34899999999999999999876555544443
No 279
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=35.64 E-value=63 Score=18.49 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=38.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
+|.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 46777876655567788889888778877775543 478888853 45666677644
No 280
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=35.26 E-value=1e+02 Score=20.75 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=30.7
Q ss_pred EEEeCCCCCCcHHHHHHHH-------cCCCCeeEEEEeeCCCCCCcccEE-EEEEcCHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFF-------GGEGKVTECHLVTDPRTRESCGFA-FVTMETVEGADR 94 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F-------~~~G~i~~v~i~~~~~~~~~~g~a-fV~f~~~~~a~~ 94 (201)
|.+..|...++++++.++. .+.-.|..+.+-.+......--++ +++|++.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4445677776665544443 345567777766554321113355 468888776643
No 281
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=35.11 E-value=99 Score=20.59 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=30.5
Q ss_pred EEEeCCCCCCcHHHHHHHHcC-------CCCeeEEEEeeCCCCCCccc--EE-EEEEcCHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFGG-------EGKVTECHLVTDPRTRESCG--FA-FVTMETVEGADR 94 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~~-------~G~i~~v~i~~~~~~~~~~g--~a-fV~f~~~~~a~~ 94 (201)
|.+..|...++++++.++.+. .-.|..+.+-.+.. +...| ++ +++|++.++.+.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 455678888887765544433 33456666655432 32233 34 467888776643
No 282
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=34.38 E-value=36 Score=26.20 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=22.0
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeE
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTE 66 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~ 66 (201)
..+.|+|||+.++...|..++.....+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 35889999999999988888875433433
No 283
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=34.04 E-value=65 Score=18.11 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=36.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc---CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME---TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~---~~~~a~~al~~l 99 (201)
.+.|.++.-..-...|+..+.....|..+.+.... +.+.|+|. +.+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVT------NECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTT------TEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHC
Confidence 46777776655567788888888777776654332 47788885 345556666644
No 284
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=34.01 E-value=30 Score=30.33 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=33.1
Q ss_pred CCCCcHHHHHHHHc----CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 46 STRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 46 p~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
+.+.+..+|..+|- .+|-|+.+.|...+. .....++++.|.+.++|.+|+..+.
T Consensus 282 ~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 282 ARSGAGINYKHIILGSEGTLGIITEAVMKVHAV-PQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -----CCCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCcchhhhhccCCCCcEEEEEEEEEEEec-ccceEEEEEEcCCHHHHHHHHHHHH
Confidence 33333345655553 457788887766542 2334578899999999988887653
No 285
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=34.01 E-value=21 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=22.9
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEE
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTEC 67 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 67 (201)
..+.|+|||+.++...|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 357899999999999999988765434333
No 286
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=33.82 E-value=1.1e+02 Score=20.59 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=33.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHc-------CCCCeeEEEEeeCCCC-CCccc--EE-EEEEcCHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFG-------GEGKVTECHLVTDPRT-RESCG--FA-FVTMETVEGADRC 95 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~-------~~G~i~~v~i~~~~~~-~~~~g--~a-fV~f~~~~~a~~a 95 (201)
.|.+..|...++++++.++++ +.-.|..+.+-.+... +...+ ++ +++|++.++.+..
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 455568888888776554443 3456677766554421 22233 34 4688888776543
No 287
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=32.69 E-value=91 Score=20.57 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 52 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 52 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
-+|.+.+...| |.+..|..+..+ +.-|+++++.+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 45777788887 666666655322 23488999887
No 288
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=32.35 E-value=30 Score=23.18 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.2
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 78 SCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 78 ~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.+||-|||=..+.++..||+.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 4689999999999999998866544
No 289
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=32.29 E-value=96 Score=20.33 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=38.1
Q ss_pred eCCCCCCcHHHHHHHH-cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 43 TGLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 43 ~nLp~~~t~~~L~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
-.++.-+.-++|.... ..||...++.+..+ --.|-..+.++..+||+.|+-.
T Consensus 34 i~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 34 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 3456667777776555 46888888877643 4678889999999999976544
No 290
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.08 E-value=98 Score=19.58 Aligned_cols=54 Identities=9% Similarity=0.141 Sum_probs=35.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc-CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~-~~~~a~~al~~l 99 (201)
+|.|. +.-..-...|+..+.+.-.|..+.+.... +.+.|+|. +.+...++|+.+
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHh
Confidence 45555 54444457788989988778888776543 36777775 456666776643
No 291
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=32.03 E-value=1.2e+02 Score=20.63 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=39.7
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 101 (201)
.++... .+++.+.+..+-+|..|.... |...-++.|.+.+.++....+..+.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 344332 567888888999999998764 33334788899999999999988866
No 292
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=31.65 E-value=75 Score=18.12 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=39.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC--HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET--VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~--~~~a~~al~~l 99 (201)
++.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHc
Confidence 57788887766678899999988778887776543 477888875 34455566544
No 293
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=31.58 E-value=9.9 Score=26.25 Aligned_cols=26 Identities=4% Similarity=-0.060 Sum_probs=0.0
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCeeCC
Q 028972 81 FAFVTMETVEGADRCIKYLNRSVLEG 106 (201)
Q Consensus 81 ~afV~f~~~~~a~~al~~l~g~~l~g 106 (201)
++|++|+++..+..||+.|+|....|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp --------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCC
Confidence 78888899999999999888876544
No 294
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=31.46 E-value=41 Score=19.04 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=32.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
.+.|.++.-..-...|+..+... .|..+.+.... +.+.|.|...+....+|+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEE------KKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTT------TEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCC------CEEEEEECCHHHHHHHHH
Confidence 35566665444456678888777 67777665432 477888875444445555
No 295
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=31.26 E-value=75 Score=18.00 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=39.6
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
..+.|.++.-..-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 468888998777778899999988778887775442 478888864 23445555543
No 296
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=31.08 E-value=74 Score=20.44 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.0
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 63 KVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 63 ~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
+|++|.|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 67888887766678889999999974
No 297
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=30.11 E-value=64 Score=26.67 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=29.3
Q ss_pred EEEeCCCCCC--cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 40 LYVTGLSTRV--TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 40 l~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
-+|||+..-. ....+.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 4677775322 345677888999998877653 245677789999998874
No 298
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.70 E-value=51 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=23.8
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHcCCCCe
Q 028972 34 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKV 64 (201)
Q Consensus 34 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i 64 (201)
.-.+.+|+|.++. ..+.++|+.++..+|-.
T Consensus 22 ~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 22 ILQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp TSTTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred cCCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 3567788898887 56788999999999854
No 299
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=28.51 E-value=77 Score=17.25 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=36.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
++.|.++.-..-...|+..+...-.|..+.+.... +.+.|+|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEA------GKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 47777876655556788888888778777765432 477888863 45556666643
No 300
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=28.29 E-value=1e+02 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.4
Q ss_pred CcHHHHHHHHcCCCCe---eEEEEeeCCCCCCcccEEEEE
Q 028972 49 VTNADLEKFFGGEGKV---TECHLVTDPRTRESCGFAFVT 85 (201)
Q Consensus 49 ~t~~~L~~~F~~~G~i---~~v~i~~~~~~~~~~g~afV~ 85 (201)
.++++|.++-.+.|++ ..+.|..+..+|....+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5789999999999987 345566554478887777753
No 301
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=28.26 E-value=74 Score=20.50 Aligned_cols=62 Identities=5% Similarity=-0.067 Sum_probs=36.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEee-CCCCCCcccEEEEEEcC-HHHHHHHHHHhC
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVT-DPRTRESCGFAFVTMET-VEGADRCIKYLN 100 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~-~~~~~~~~g~afV~f~~-~~~a~~al~~l~ 100 (201)
.|.|.-....+.+..|.++..+||--.+|..-. +...+...|.-+|++.- .+++++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 444444444556667777777787544432211 22245566788888864 566777877664
No 302
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=27.97 E-value=1.1e+02 Score=20.87 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=17.9
Q ss_pred CCCeeEEEEeeCCCCCCcccEEEEE-EcCHHHHHHHHHHh
Q 028972 61 EGKVTECHLVTDPRTRESCGFAFVT-METVEGADRCIKYL 99 (201)
Q Consensus 61 ~G~i~~v~i~~~~~~~~~~g~afV~-f~~~~~a~~al~~l 99 (201)
+-+|+.|.+-.|-. ...+||. |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHHHH
Confidence 44788888866532 1244555 44444444444434
No 303
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.76 E-value=1.6e+02 Score=20.83 Aligned_cols=52 Identities=6% Similarity=0.033 Sum_probs=38.0
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
.++. ...+++.+.+..+-+|..|... +|...-++.|.+.+.++....++.|.
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l~ 145 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 145 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4443 3457788888999999999876 34444477889999999888876553
No 304
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=27.40 E-value=38 Score=27.82 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=32.6
Q ss_pred EEeCCCCC---CcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 41 YVTGLSTR---VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 41 ~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
+||||..- -....+.++..+||+|..+.+.. .-+|...+++.+++++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHH
Confidence 57886532 23456778889999998877632 33455668888888764
No 305
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=26.30 E-value=74 Score=20.87 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHcCCCCeeEEEEe-eCCCCCCcccEEEEEEc-CHHHHHHHHHHhCCC
Q 028972 47 TRVTNADLEKFFGGEGKVTECHLV-TDPRTRESCGFAFVTME-TVEGADRCIKYLNRS 102 (201)
Q Consensus 47 ~~~t~~~L~~~F~~~G~i~~v~i~-~~~~~~~~~g~afV~f~-~~~~a~~al~~l~g~ 102 (201)
..+.+..|-++..+||--.+|..- .+...+...|.-+|++. +.+++++|+..|...
T Consensus 31 ~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 31 QSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp ECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 344556777888888854443221 12224566778888886 456677787766443
No 306
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.12 E-value=25 Score=21.49 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=7.5
Q ss_pred cEEEEEEcC
Q 028972 80 GFAFVTMET 88 (201)
Q Consensus 80 g~afV~f~~ 88 (201)
..|||.|++
T Consensus 38 ~~ClV~FeD 46 (68)
T 2e5p_A 38 EVCLVQFED 46 (68)
T ss_dssp TEEEEEETT
T ss_pred cEEEEEEcc
Confidence 589999976
No 307
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.10 E-value=1.6e+02 Score=20.13 Aligned_cols=53 Identities=6% Similarity=0.031 Sum_probs=39.1
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 101 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 101 (201)
.++. ...+++.+.+..+-+|..|... +|...-++.|.+.+.++....++.+..
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 4443 3457788889999999999876 344444778899999999888866644
No 308
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.06 E-value=84 Score=20.91 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCCCCCcHHHHHHHH-cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 44 GLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 44 nLp~~~t~~~L~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
.++.-+.-++|+.-. ..||...++.+..+ --.|-..+.++..+||+.|+-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 456667767776554 46888777776633 3567788999999999976544
No 309
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.99 E-value=26 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=15.5
Q ss_pred EEeCCCCCCcHHHHHHHH-cCCCC
Q 028972 41 YVTGLSTRVTNADLEKFF-GGEGK 63 (201)
Q Consensus 41 ~V~nLp~~~t~~~L~~~F-~~~G~ 63 (201)
+|.+|...||-+||...| +..|.
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EEECCCCCCcHHHHHHHHHhccCC
Confidence 345788889988877754 44454
No 310
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=25.98 E-value=95 Score=17.47 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=39.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
.++.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 357888888776677789999888778777765432 477888853 45556666644
No 311
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=25.86 E-value=1.3e+02 Score=19.42 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCCCCCcHHHHHHHH-cCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeeeEEeeccc
Q 028972 44 GLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 116 (201)
Q Consensus 44 nLp~~~t~~~L~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~l~g~~i~V~~a~~ 116 (201)
.++.-+.-++|..-. ..||...++.+..+ --.|-..+.++..+||+.|+-.. .-+.|+|-....
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEcC
Confidence 456666767776554 46888888777632 35778899999999999765442 333444444433
No 312
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.84 E-value=1e+02 Score=20.39 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.6
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 63 KVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 63 ~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
+|++|.|..-...++-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788877666678889999999864
No 313
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=25.32 E-value=1.2e+02 Score=18.31 Aligned_cols=52 Identities=4% Similarity=-0.022 Sum_probs=31.1
Q ss_pred CcHHHHHHHHcCCC-CeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 028972 49 VTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 102 (201)
Q Consensus 49 ~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 102 (201)
-.-.+|..+|.+.| .|..+.+.... +.......|+..+.+..+++++.|...
T Consensus 17 G~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 17 GMTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRKV 69 (88)
T ss_dssp THHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhcC
Confidence 34578888998886 67777665432 111111123455677778888777553
No 314
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=25.29 E-value=1.8e+02 Score=20.44 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHcCCCCeeEEEEeeCC-CCC--------------CcccEEEEEEcCHHHHHHHHHHh
Q 028972 54 LEKFFGGEGKVTECHLVTDP-RTR--------------ESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 54 L~~~F~~~G~i~~v~i~~~~-~~~--------------~~~g~afV~f~~~~~a~~al~~l 99 (201)
..++|..||.+..+...-+. ..| ..--|.+|+|.+.+...++++++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 45789999977665433221 112 22348999999998888777443
No 315
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=25.21 E-value=1.4e+02 Score=19.12 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=31.1
Q ss_pred EEEeCCCCCCcHHHHHHHHc-------CCCCeeEEEEeeCCCCCCccc--EE-EEEEcCHHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFG-------GEGKVTECHLVTDPRTRESCG--FA-FVTMETVEGADR 94 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~-------~~G~i~~v~i~~~~~~~~~~g--~a-fV~f~~~~~a~~ 94 (201)
|.+-.|...++++++.++.+ +.-.|..+.+-.+.. +...| ++ +++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 44456777777665544432 245677777665542 33233 33 468888777643
No 316
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.82 E-value=1.1e+02 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.6
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 63 KVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 63 ~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
+|++|.|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 56777776666678888899998864
No 317
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=24.76 E-value=1.9e+02 Score=21.10 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=31.8
Q ss_pred CeEEEeCCCCCCcHHH--------HHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC
Q 028972 38 NNLYVTGLSTRVTNAD--------LEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 88 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~--------L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 88 (201)
..=|+-.||.+++.++ ++++|..+|-|.++.|..+. . ..-.|.|.|.+
T Consensus 71 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~--~-~NpHaHim~t~ 126 (185)
T 2ns6_A 71 FKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG--G-ENPHCHLMISE 126 (185)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET--T-TEEEEEEEECC
T ss_pred EEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC--C-CCceEEEEEee
Confidence 3456778999988654 44556777888888777532 1 23377777765
No 318
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=24.46 E-value=74 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 99 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 99 (201)
-++|+.||..|-... .| +.+.+..|.+.+.|.+.|+..
T Consensus 132 l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHHH
Confidence 467899999995432 12 236778889999999888754
No 319
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.01 E-value=1.4e+02 Score=19.91 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=35.5
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH-HHhCC
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCI-KYLNR 101 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al-~~l~g 101 (201)
..+++.+.+..+.+|..|... +|...-++.|.+.+.++....+ +.+..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 446677788889999888654 4444457788999999999888 55543
No 320
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=23.72 E-value=61 Score=24.20 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=32.4
Q ss_pred cHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 50 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
.+++|.+.+..|.++. +..+.-+..-||+|.+.++....|..|.|.+
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie 112 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIE 112 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGG
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 4455655556665431 2234444578999999999999999998863
No 321
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A {Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Probab=23.64 E-value=50 Score=25.09 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=32.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCC-eeEEEEeeCCCC---CCcccEEEEEEcCHHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGK-VTECHLVTDPRT---RESCGFAFVTMETVEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~al~~ 98 (201)
+|.|.-||-.-.++.++.+|+..|= |.-..+..+..- |.+. |.-|...-..-...||.+
T Consensus 119 ~~~~p~lp~rgg~~l~~rLFePLGw~V~a~~~~ld~~fp~WG~Sr-y~~l~L~g~~rladaL~h 181 (230)
T 4dqz_A 119 KAKIMMLPCKGGEEIIYRLFEPLGYKVDVEGYMLDEKFPEWGKSR-YYTVSLEGEVRVRDLLNH 181 (230)
T ss_dssp EEEEEEEECTTHHHHHHHHHGGGTCEEEEEEC------------C-EEEEEEEEEECHHHHHHH
T ss_pred EEEeeeeecCCcHHHHHHhhccccceEeeeecccCccCcccCCcc-ceEEEEeeeEEHHHHhhh
Confidence 5777888888788899999999994 433334433211 3332 555555544444444443
No 322
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=23.17 E-value=1.7e+02 Score=19.50 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=29.8
Q ss_pred EEEeCCCCCCcHHHHHHHHc------CCCCeeEEEEeeCCCC----CCccc--EE-EEEEcCHHHHH
Q 028972 40 LYVTGLSTRVTNADLEKFFG------GEGKVTECHLVTDPRT----RESCG--FA-FVTMETVEGAD 93 (201)
Q Consensus 40 l~V~nLp~~~t~~~L~~~F~------~~G~i~~v~i~~~~~~----~~~~g--~a-fV~f~~~~~a~ 93 (201)
|.+..|...++++++.++.+ +.-.|..+.+-.+... +...| +| +++|++.++.+
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~ 90 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQK 90 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHH
Confidence 44557777877766544432 2345566666554332 22333 34 45888877654
No 323
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=23.14 E-value=1e+02 Score=16.88 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=37.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~ 98 (201)
++.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|.. .+....+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTT------TEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 57788887666667788888888778777765432 477788863 3555666653
No 324
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=22.80 E-value=92 Score=19.06 Aligned_cols=55 Identities=7% Similarity=-0.068 Sum_probs=34.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc-CHHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~-~~~~a~~al~~l 99 (201)
+|.|.++.-..-...|+..+.....|..+.+.... +.+.|+|. +.+...++|+.+
T Consensus 25 ~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~------~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 25 SFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPAS------RTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTT------TEEEEESCCCHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCC------CEEEEEecCCHHHHHHHHHHc
Confidence 56666666544456788888877667777665432 36677764 455666677643
No 325
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=22.79 E-value=39 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHHHHc--CCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 54 LEKFFG--GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 54 L~~~F~--~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
|..+|. .+|-|+.+.+...+. ......+++.|.+.++|..|+.
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~-p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPN-PGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEEC-CSCEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeC-CCceEEEEEEcCCHHHHHHHHH
Confidence 344443 478888887765542 2234578889999888766653
No 326
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.50 E-value=70 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEeCCCCCCcHHHHHHHHcC-CC-CeeEEEEee
Q 028972 41 YVTGLSTRVTNADLEKFFGG-EG-KVTECHLVT 71 (201)
Q Consensus 41 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~ 71 (201)
|+..+...++..+|++.+++ |+ .|..|..+.
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~ 57 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMN 57 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEE
Confidence 56667888999888887775 44 566665543
No 327
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=22.36 E-value=1.2e+02 Score=17.35 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=35.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHHHh
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 99 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~al~~l 99 (201)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4677777665556678888888766766554332 2477888853 45556666643
No 328
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.33 E-value=19 Score=25.48 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHc-CCCC-eeEE----EEeeCCCCCCcccEEEEEEcCHHHHHH
Q 028972 48 RVTNADLEKFFG-GEGK-VTEC----HLVTDPRTRESCGFAFVTMETVEGADR 94 (201)
Q Consensus 48 ~~t~~~L~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 94 (201)
.++..+|.+.+. .|+. -.++ .|......+...|||.| |++.+.|+.
T Consensus 39 Tpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk 90 (138)
T 3iz6_U 39 NVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKK 90 (138)
T ss_dssp CCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 455677777665 4554 2222 22333345777888876 677666554
No 329
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.23 E-value=59 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=26.4
Q ss_pred eeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 028972 64 VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 103 (201)
Q Consensus 64 i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 103 (201)
|..|.++.. ..||.||++...+++..+|..+.|..
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 556665532 46899999999888888888777764
No 330
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.11 E-value=33 Score=21.58 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=7.9
Q ss_pred cEEEEEEcCH
Q 028972 80 GFAFVTMETV 89 (201)
Q Consensus 80 g~afV~f~~~ 89 (201)
..|||.|++.
T Consensus 55 e~ClV~F~D~ 64 (79)
T 2m0o_A 55 EVCLVQFEDD 64 (79)
T ss_dssp TEEEEEETTS
T ss_pred CEEEEEEcCC
Confidence 4899999863
No 331
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.81 E-value=2e+02 Score=19.65 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=39.0
Q ss_pred eEEEeCCCCCCcHHHH---HHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc--CHHHHHHHHHHh-------CCC---e
Q 028972 39 NLYVTGLSTRVTNADL---EKFFGGEGKVTECHLVTDPRTRESCGFAFVTME--TVEGADRCIKYL-------NRS---V 103 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L---~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~~a~~al~~l-------~g~---~ 103 (201)
.|.|.++|..+..+-. +.+-..|.--....|+- ...|.-.|.|. +.+..++||+.| .|+ .
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~img-----sgsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMG-----SGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC-----TTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEe-----CCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 4667899987764322 22223343222333332 22356777774 788888888765 343 3
Q ss_pred eCCeeeEEee
Q 028972 104 LEGRLITVEK 113 (201)
Q Consensus 104 l~g~~i~V~~ 113 (201)
|.|..|.|..
T Consensus 119 l~gn~l~i~i 128 (170)
T 4hhu_A 119 LSGNRLVIVI 128 (170)
T ss_dssp ECSSEEEEEE
T ss_pred EeCCEEEEEE
Confidence 6777766544
No 332
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.64 E-value=2e+02 Score=19.61 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=38.9
Q ss_pred CCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH-HhC
Q 028972 44 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK-YLN 100 (201)
Q Consensus 44 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~-~l~ 100 (201)
.++.....+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+. .+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 344333457788899999999999877 44444477889999999998884 444
No 333
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=21.49 E-value=2.3e+02 Score=20.23 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=41.0
Q ss_pred CeEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHHHh
Q 028972 38 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 99 (201)
Q Consensus 38 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~al~~l 99 (201)
..|.|.++.-..-...|+..+.+.-.|..+.+.... +.+.|+|. +.++...+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 457888887766677899999998888888776543 47888885 346667777655
No 334
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=21.41 E-value=94 Score=26.06 Aligned_cols=10 Identities=0% Similarity=-0.263 Sum_probs=6.7
Q ss_pred cCCCCeeEEE
Q 028972 59 GGEGKVTECH 68 (201)
Q Consensus 59 ~~~G~i~~v~ 68 (201)
+.||+|..|.
T Consensus 336 E~FgPVl~v~ 345 (452)
T 3my7_A 336 EKLSPTLGMF 345 (452)
T ss_dssp CCSSSEEEEE
T ss_pred CccCcEEEEE
Confidence 6788885543
No 335
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=21.13 E-value=94 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 100 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 100 (201)
-++|+.+|..|-... .| +.+.+..|.+.+.|.+.|+..+
T Consensus 128 l~~i~~fF~~YK~le---------~g--K~v~~~gw~~~~~A~~~I~~~~ 166 (173)
T 1qez_A 128 KNKIVHFFEHYKELE---------PG--KYVKISGWGSATEAKNRIQLAI 166 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc---------CC--CceEEccccCHHHHHHHHHHHH
Confidence 467888999995432 12 2366778889999998887554
No 336
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=21.06 E-value=1.2e+02 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHH
Q 028972 51 NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 97 (201)
Q Consensus 51 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 97 (201)
...|.++..+||+|..+.+. +.-+|.+.+++.++.++.
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHH
T ss_pred hHHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHH
Confidence 34577788999999887763 145678889999999886
No 337
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=20.70 E-value=1.8e+02 Score=18.88 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=32.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHcC-------CCCeeEEEEeeCCCC-CCccc--EE-EEEEcCHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGG-------EGKVTECHLVTDPRT-RESCG--FA-FVTMETVEGADR 94 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~-------~G~i~~v~i~~~~~~-~~~~g--~a-fV~f~~~~~a~~ 94 (201)
.|.+..|...++++++.++.+. .-.|..+.+-.+... +...| ++ +++|++.++.+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 3445678888887765544432 345666666554322 22233 34 568998877654
No 338
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=20.68 E-value=1.2e+02 Score=21.09 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=29.5
Q ss_pred EeCCCCCCcHHHHHHHHc-CCC--CeeEEEEeeCC----------CCCCcccEEEEEEcC
Q 028972 42 VTGLSTRVTNADLEKFFG-GEG--KVTECHLVTDP----------RTRESCGFAFVTMET 88 (201)
Q Consensus 42 V~nLp~~~t~~~L~~~F~-~~G--~i~~v~i~~~~----------~~~~~~g~afV~f~~ 88 (201)
|-.+..-++++++.+++. .++ +|..+.+-..+ ......+|.||.|++
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 666777899999999985 443 55555442221 113345678888865
No 339
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.25 E-value=1.3e+02 Score=17.06 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=34.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcCCCCeeEEEEeeCCCCCCcccEEEEEEc-CHHHHHHHHHH
Q 028972 39 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKY 98 (201)
Q Consensus 39 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~-~~~~a~~al~~ 98 (201)
+|.| ++.-..-...|+..+.+...| .+.+.... +-+.|++. +.++..++|+.
T Consensus 5 ~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~------~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 5 EFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPN------KKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCC------CEEEEEecCCHHHHHHHHHH
Confidence 5667 776655567788888877667 77766543 25667764 56666777763
No 340
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.19 E-value=37 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=13.9
Q ss_pred cHHHHHHHHcCCCCeeE
Q 028972 50 TNADLEKFFGGEGKVTE 66 (201)
Q Consensus 50 t~~~L~~~F~~~G~i~~ 66 (201)
|--||.+++.+||.|..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 55789999999997754
Done!