Query 028973
Match_columns 201
No_of_seqs 109 out of 393
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 5.4E-52 1.2E-56 350.8 12.1 187 5-199 8-194 (220)
2 PF03227 GILT: Gamma interfero 100.0 7.1E-39 1.5E-43 244.0 9.3 107 42-151 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 99.0 3.8E-09 8.3E-14 81.7 10.0 140 37-197 2-141 (154)
4 cd03019 DsbA_DsbA DsbA family, 98.9 1.1E-08 2.3E-13 81.8 8.5 137 39-197 14-155 (178)
5 PF13462 Thioredoxin_4: Thiore 98.8 7.6E-09 1.7E-13 81.2 5.2 144 32-198 4-149 (162)
6 PRK10954 periplasmic protein d 98.4 2.6E-06 5.6E-11 71.2 10.2 142 39-197 36-179 (207)
7 cd03024 DsbA_FrnE DsbA family, 97.7 0.00031 6.7E-09 57.2 9.6 148 44-196 1-186 (201)
8 cd03025 DsbA_FrnE_like DsbA fa 97.5 0.00055 1.2E-08 55.3 8.0 148 42-194 1-178 (193)
9 PF01323 DSBA: DSBA-like thior 97.3 0.00032 6.9E-09 56.5 4.4 145 43-194 1-176 (193)
10 COG1651 DsbG Protein-disulfide 97.3 0.0015 3.3E-08 55.2 8.6 146 32-197 76-227 (244)
11 PF13743 Thioredoxin_5: Thiore 97.3 0.0011 2.3E-08 54.4 7.2 143 46-193 2-155 (176)
12 cd03022 DsbA_HCCA_Iso DsbA fam 96.5 0.0059 1.3E-07 49.1 5.4 55 140-196 124-178 (192)
13 cd02972 DsbA_family DsbA famil 96.4 0.0097 2.1E-07 41.5 5.8 41 44-87 1-41 (98)
14 COG2761 FrnE Predicted dithiol 96.0 0.025 5.5E-07 48.5 7.3 154 38-196 2-195 (225)
15 PRK10877 protein disulfide iso 95.2 0.11 2.4E-06 44.4 8.1 45 35-85 102-146 (232)
16 PRK11657 dsbG disulfide isomer 94.2 0.099 2.2E-06 45.2 5.6 47 35-86 112-158 (251)
17 cd03020 DsbA_DsbC_DsbG DsbA fa 89.7 0.64 1.4E-05 38.1 4.9 46 35-87 72-117 (197)
18 cd02973 TRX_GRX_like Thioredox 87.8 1.1 2.5E-05 29.7 4.3 17 42-58 1-17 (67)
19 TIGR00411 redox_disulf_1 small 86.5 1.5 3.3E-05 29.9 4.4 27 42-69 1-27 (82)
20 PF14595 Thioredoxin_9: Thiore 85.9 1.5 3.3E-05 34.1 4.6 45 37-85 38-82 (129)
21 cd03021 DsbA_GSTK DsbA family, 83.7 1.8 3.9E-05 35.8 4.4 49 143-193 136-187 (209)
22 KOG1752 Glutaredoxin and relat 83.7 1.5 3.2E-05 33.3 3.5 31 162-197 49-79 (104)
23 TIGR02189 GlrX-like_plant Glut 82.7 2.9 6.2E-05 30.9 4.7 50 142-197 24-73 (99)
24 KOG2501 Thioredoxin, nucleored 80.7 0.86 1.9E-05 37.2 1.3 60 39-102 32-94 (157)
25 cd03026 AhpF_NTD_C TRX-GRX-lik 80.0 4 8.8E-05 29.5 4.6 42 38-83 10-51 (89)
26 PF13905 Thioredoxin_8: Thiore 77.8 7.2 0.00016 27.3 5.3 42 40-84 1-44 (95)
27 cd03027 GRX_DEP Glutaredoxin ( 74.4 6.5 0.00014 26.7 4.2 48 142-198 17-64 (73)
28 PF13098 Thioredoxin_2: Thiore 71.2 8.6 0.00019 27.8 4.4 28 38-66 3-30 (112)
29 TIGR02190 GlrX-dom Glutaredoxi 70.3 4.8 0.0001 28.0 2.7 22 37-58 3-24 (79)
30 PHA03050 glutaredoxin; Provisi 69.5 6.4 0.00014 29.6 3.5 27 166-197 55-81 (108)
31 PF00462 Glutaredoxin: Glutare 68.9 4.7 0.0001 26.3 2.3 15 44-58 1-15 (60)
32 PRK11200 grxA glutaredoxin 1; 68.8 3.8 8.3E-05 28.8 2.0 16 43-58 2-17 (85)
33 PF00462 Glutaredoxin: Glutare 68.4 8.5 0.00018 25.0 3.5 15 182-196 46-60 (60)
34 cd02949 TRX_NTR TRX domain, no 68.1 16 0.00036 25.9 5.3 33 39-74 12-44 (97)
35 cd02066 GRX_family Glutaredoxi 67.9 4.8 0.00011 26.0 2.3 16 43-58 1-16 (72)
36 TIGR02200 GlrX_actino Glutared 67.5 4.8 0.00011 26.9 2.2 16 43-58 1-16 (77)
37 cd03419 GRX_GRXh_1_2_like Glut 66.2 5.6 0.00012 27.1 2.4 16 43-58 1-16 (82)
38 cd03418 GRX_GRXb_1_3_like Glut 63.2 6.5 0.00014 26.4 2.2 16 43-58 1-16 (75)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 62.3 18 0.00039 25.3 4.6 38 40-80 18-55 (104)
40 TIGR02180 GRX_euk Glutaredoxin 59.0 7.5 0.00016 26.5 2.0 15 44-58 1-15 (84)
41 PRK11200 grxA glutaredoxin 1; 57.4 11 0.00024 26.3 2.7 15 183-197 56-70 (85)
42 cd03027 GRX_DEP Glutaredoxin ( 57.4 8.4 0.00018 26.1 2.0 16 43-58 2-17 (73)
43 cd03028 GRX_PICOT_like Glutare 57.4 25 0.00054 25.1 4.6 49 141-198 28-76 (90)
44 PHA03050 glutaredoxin; Provisi 57.3 9.2 0.0002 28.8 2.3 16 43-58 14-29 (108)
45 PF11287 DUF3088: Protein of u 57.1 6.3 0.00014 30.4 1.4 35 50-88 22-56 (112)
46 TIGR02189 GlrX-like_plant Glut 56.5 9.7 0.00021 28.0 2.3 16 43-58 9-24 (99)
47 PF00085 Thioredoxin: Thioredo 55.8 22 0.00047 24.7 4.0 33 39-74 16-48 (103)
48 TIGR00365 monothiol glutaredox 55.4 25 0.00053 25.7 4.3 47 142-197 33-79 (97)
49 cd01659 TRX_superfamily Thiore 55.3 24 0.00053 20.8 3.8 35 44-82 1-35 (69)
50 COG0695 GrxC Glutaredoxin and 54.4 11 0.00024 26.6 2.2 16 43-58 2-17 (80)
51 PF13728 TraF: F plasmid trans 54.1 12 0.00025 31.7 2.7 40 38-84 118-157 (215)
52 COG0695 GrxC Glutaredoxin and 54.0 10 0.00022 26.9 2.0 45 146-197 21-65 (80)
53 TIGR02181 GRX_bact Glutaredoxi 53.1 11 0.00025 25.7 2.1 15 44-58 1-15 (79)
54 cd03029 GRX_hybridPRX5 Glutare 52.8 15 0.00033 24.7 2.7 16 43-58 2-17 (72)
55 TIGR01126 pdi_dom protein disu 52.7 29 0.00063 24.1 4.3 26 39-65 12-37 (102)
56 TIGR02196 GlrX_YruB Glutaredox 52.2 8.2 0.00018 25.1 1.2 15 44-58 2-16 (74)
57 cd02976 NrdH NrdH-redoxin (Nrd 52.1 13 0.00028 24.1 2.2 16 43-58 1-16 (73)
58 TIGR02183 GRXA Glutaredoxin, G 52.0 13 0.00028 26.4 2.3 15 44-58 2-16 (86)
59 cd03012 TlpA_like_DipZ_like Tl 51.9 34 0.00074 25.4 4.7 40 39-82 22-61 (126)
60 cd03001 PDI_a_P5 PDIa family, 51.7 42 0.00091 23.5 5.0 28 40-68 18-45 (103)
61 PRK15317 alkyl hydroperoxide r 51.2 25 0.00054 33.1 4.7 61 17-81 90-153 (517)
62 PRK12759 bifunctional gluaredo 51.1 25 0.00053 32.6 4.5 56 141-197 17-72 (410)
63 cd02961 PDI_a_family Protein D 50.6 46 0.001 22.5 5.0 28 41-69 16-43 (101)
64 PRK10824 glutaredoxin-4; Provi 50.0 12 0.00025 28.8 1.9 47 142-197 36-82 (115)
65 cd03002 PDI_a_MPD1_like PDI fa 49.7 37 0.0008 24.1 4.5 29 39-68 17-45 (109)
66 PRK10638 glutaredoxin 3; Provi 49.1 17 0.00037 25.3 2.5 16 43-58 3-18 (83)
67 cd03004 PDI_a_ERdj5_C PDIa fam 49.0 40 0.00087 23.9 4.6 20 39-58 18-37 (104)
68 TIGR01295 PedC_BrcD bacterioci 48.8 33 0.00071 26.1 4.2 28 40-68 23-50 (122)
69 PRK09381 trxA thioredoxin; Pro 48.0 54 0.0012 23.5 5.2 29 40-69 21-49 (109)
70 PRK13728 conjugal transfer pro 47.7 16 0.00034 30.4 2.4 34 44-84 73-106 (181)
71 cd02950 TxlA TRX-like protein 47.0 47 0.001 25.8 5.0 30 38-68 18-47 (142)
72 PF13192 Thioredoxin_3: Thiore 46.3 62 0.0014 22.1 5.0 35 42-82 1-35 (76)
73 PRK13703 conjugal pilus assemb 45.4 15 0.00032 32.0 2.0 38 40-84 143-180 (248)
74 KOG3425 Uncharacterized conser 45.2 31 0.00068 27.1 3.6 37 49-88 42-78 (128)
75 TIGR02739 TraF type-F conjugat 45.1 16 0.00034 32.0 2.1 39 39-84 149-187 (256)
76 cd02998 PDI_a_ERp38 PDIa famil 44.9 44 0.00096 23.2 4.2 29 39-68 17-45 (105)
77 PRK03147 thiol-disulfide oxido 44.9 72 0.0016 24.7 5.8 30 39-69 60-89 (173)
78 PRK10329 glutaredoxin-like pro 44.0 25 0.00054 24.8 2.7 20 43-63 2-21 (81)
79 TIGR01068 thioredoxin thioredo 43.9 54 0.0012 22.5 4.5 27 40-67 14-40 (101)
80 cd03003 PDI_a_ERdj5_N PDIa fam 43.3 77 0.0017 22.3 5.3 28 40-68 18-45 (101)
81 cd02993 PDI_a_APS_reductase PD 43.2 59 0.0013 23.6 4.8 30 38-68 19-48 (109)
82 TIGR03140 AhpF alkyl hydropero 42.9 44 0.00096 31.5 5.0 43 16-58 90-135 (515)
83 PTZ00051 thioredoxin; Provisio 42.4 74 0.0016 22.1 5.1 29 39-68 17-45 (98)
84 cd02956 ybbN ybbN protein fami 42.2 62 0.0014 22.4 4.6 30 38-68 10-39 (96)
85 cd02965 HyaE HyaE family; HyaE 41.1 39 0.00086 25.8 3.6 35 39-76 26-62 (111)
86 cd03031 GRX_GRX_like Glutaredo 40.5 25 0.00054 28.1 2.5 16 184-199 59-74 (147)
87 cd03022 DsbA_HCCA_Iso DsbA fam 39.6 49 0.0011 26.1 4.1 35 44-83 1-35 (192)
88 cd02964 TryX_like_family Trypa 39.3 58 0.0013 24.4 4.3 30 39-69 16-45 (132)
89 COG4545 Glutaredoxin-related p 39.1 18 0.0004 26.2 1.3 19 45-64 5-23 (85)
90 TIGR02194 GlrX_NrdH Glutaredox 38.9 25 0.00054 23.7 2.0 15 44-58 1-15 (72)
91 TIGR02187 GlrX_arch Glutaredox 38.7 57 0.0012 27.0 4.5 22 37-58 130-151 (215)
92 cd02969 PRX_like1 Peroxiredoxi 37.9 66 0.0014 25.2 4.6 41 39-83 24-64 (171)
93 cd03009 TryX_like_TryX_NRX Try 37.5 72 0.0016 23.6 4.6 30 39-69 17-46 (131)
94 cd02997 PDI_a_PDIR PDIa family 36.5 56 0.0012 22.7 3.7 28 40-68 17-44 (104)
95 cd02975 PfPDO_like_N Pyrococcu 36.2 73 0.0016 23.6 4.3 19 40-58 21-40 (113)
96 cd03021 DsbA_GSTK DsbA family, 36.2 75 0.0016 26.0 4.8 36 43-83 2-37 (209)
97 cd02948 TRX_NDPK TRX domain, T 35.7 1.2E+02 0.0026 21.7 5.4 30 39-69 16-45 (102)
98 PRK10996 thioredoxin 2; Provis 35.1 83 0.0018 24.2 4.7 30 39-69 51-80 (139)
99 cd03006 PDI_a_EFP1_N PDIa fami 33.3 1E+02 0.0022 23.2 4.7 21 38-58 27-47 (113)
100 cd02999 PDI_a_ERp44_like PDIa 32.0 1.1E+02 0.0024 22.0 4.7 30 38-68 16-45 (100)
101 KOG1752 Glutaredoxin and relat 32.0 36 0.00079 25.6 2.1 39 43-85 15-53 (104)
102 cd02966 TlpA_like_family TlpA- 31.6 1.5E+02 0.0032 20.2 5.2 30 39-69 18-47 (116)
103 cd02951 SoxW SoxW family; SoxW 31.6 50 0.0011 24.4 2.8 19 41-59 15-33 (125)
104 cd03010 TlpA_like_DsbE TlpA-li 31.3 56 0.0012 24.1 3.0 28 39-67 24-51 (127)
105 cd03040 GST_N_mPGES2 GST_N fam 31.0 33 0.00072 23.0 1.6 17 43-59 1-17 (77)
106 PTZ00062 glutaredoxin; Provisi 30.5 46 0.001 28.0 2.7 27 41-69 18-44 (204)
107 PF06110 DUF953: Eukaryotic pr 30.0 93 0.002 24.0 4.1 33 50-85 36-68 (119)
108 TIGR00412 redox_disulf_2 small 29.1 1.4E+02 0.0029 20.4 4.5 25 43-69 2-26 (76)
109 PF07908 D-aminoacyl_C: D-amin 28.6 53 0.0012 21.1 2.1 15 183-197 17-31 (48)
110 cd03008 TryX_like_RdCVF Trypar 27.6 85 0.0018 24.9 3.6 32 37-69 22-53 (146)
111 cd02947 TRX_family TRX family; 27.4 90 0.002 20.4 3.3 18 41-58 11-28 (93)
112 cd02967 mauD Methylamine utili 27.2 1.6E+02 0.0034 20.9 4.8 20 40-59 21-40 (114)
113 PF00578 AhpC-TSA: AhpC/TSA fa 27.1 97 0.0021 22.3 3.7 30 39-69 24-54 (124)
114 cd02962 TMX2 TMX2 family; comp 26.7 3.3E+02 0.0071 21.6 7.0 20 39-58 46-65 (152)
115 PF07172 GRP: Glycine rich pro 26.3 40 0.00086 25.1 1.4 23 11-33 6-28 (95)
116 cd02996 PDI_a_ERp44 PDIa famil 26.2 61 0.0013 23.3 2.4 20 40-59 18-37 (108)
117 cd02984 TRX_PICOT TRX domain, 26.1 1.6E+02 0.0036 20.1 4.6 28 40-68 14-41 (97)
118 cd02963 TRX_DnaJ TRX domain, D 26.0 1.2E+02 0.0026 22.1 4.0 31 37-68 21-51 (111)
119 cd02954 DIM1 Dim1 family; Dim1 25.7 1.5E+02 0.0033 22.6 4.6 21 38-58 12-32 (114)
120 cd02953 DsbDgamma DsbD gamma f 25.7 59 0.0013 23.1 2.2 21 39-59 10-30 (104)
121 cd03079 GST_N_Metaxin2 GST_N f 25.3 51 0.0011 23.2 1.7 39 144-198 25-63 (74)
122 TIGR02738 TrbB type-F conjugat 25.0 83 0.0018 25.0 3.1 29 40-69 50-78 (153)
123 cd02992 PDI_a_QSOX PDIa family 24.8 2.5E+02 0.0054 20.6 5.6 20 40-59 19-38 (114)
124 TIGR01617 arsC_related transcr 24.3 53 0.0011 24.6 1.8 16 44-59 1-16 (117)
125 cd02968 SCO SCO (an acronym fo 24.0 1.8E+02 0.0038 21.5 4.7 33 39-74 21-54 (142)
126 PF08534 Redoxin: Redoxin; In 23.8 1.6E+02 0.0036 22.0 4.5 30 36-66 24-54 (146)
127 cd03030 GRX_SH3BGR Glutaredoxi 23.8 57 0.0012 23.9 1.8 17 183-199 58-74 (92)
128 TIGR03143 AhpF_homolog putativ 23.7 1.3E+02 0.0029 28.7 4.8 43 17-59 450-495 (555)
129 PF07511 DUF1525: Protein of u 23.3 74 0.0016 24.5 2.4 25 172-196 70-94 (114)
130 PF15347 PAG: Phosphoprotein a 23.1 56 0.0012 30.4 2.0 22 6-27 18-39 (428)
131 PTZ00443 Thioredoxin domain-co 22.9 2E+02 0.0044 24.4 5.3 33 40-75 52-84 (224)
132 PF07315 DUF1462: Protein of u 22.8 56 0.0012 24.4 1.6 15 184-198 66-80 (93)
133 cd03037 GST_N_GRX2 GST_N famil 22.5 43 0.00093 22.1 0.9 14 45-58 2-15 (71)
134 PHA02125 thioredoxin-like prot 22.5 67 0.0015 21.8 1.9 15 44-58 2-16 (75)
135 PRK12759 bifunctional gluaredo 22.2 69 0.0015 29.6 2.4 16 43-58 3-18 (410)
136 smart00594 UAS UAS domain. 21.8 47 0.001 25.0 1.1 44 38-85 25-68 (122)
137 cd03000 PDI_a_TMX3 PDIa family 21.6 1.1E+02 0.0025 21.7 3.1 29 39-68 14-42 (104)
138 cd03005 PDI_a_ERp46 PDIa famil 21.0 1.8E+02 0.004 20.0 4.0 25 43-68 19-43 (102)
139 TIGR02187 GlrX_arch Glutaredox 20.9 1.8E+02 0.004 23.9 4.6 20 39-58 18-40 (215)
140 PRK13675 GTP cyclohydrolase; P 20.3 1.5E+02 0.0033 26.6 4.2 23 39-61 144-166 (308)
141 cd02977 ArsC_family Arsenate R 20.3 58 0.0013 23.7 1.3 16 44-59 1-16 (105)
142 TIGR02661 MauD methylamine deh 20.2 2.2E+02 0.0047 23.0 4.8 29 39-68 73-101 (189)
143 TIGR02740 TraF-like TraF-like 20.1 97 0.0021 27.0 2.8 29 39-68 165-193 (271)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-52 Score=350.80 Aligned_cols=187 Identities=45% Similarity=0.848 Sum_probs=160.6
Q ss_pred ccchhHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973 5 SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (201)
.|.++.++++|+.+.++++.-+-+-+ .+.+.+||+|++|||||||||++||++||+|+|.. .+.+++||++||||
T Consensus 8 ~~~~~~~~~~F~c~~~~~~~~~~~~~----~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~-~~~~~idl~lvPfG 82 (220)
T KOG3160|consen 8 KYPSLAILSFFVCLLLFSFLLGILVA----KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDN-LLPSILDLTLVPFG 82 (220)
T ss_pred hcccchhhheeeecchHhhhhhheee----ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhh-cccceeEEEEEccC
Confidence 45566666665544444433222221 35556699999999999999999999999999997 47999999999999
Q ss_pred cceecCCCCceeecCChhhhhhhHhhhhhcccccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCch
Q 028973 85 NAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGY 164 (201)
Q Consensus 85 ~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~ 164 (201)
||+..+++++|+||||+.||.+|++|+|+|++++++.++++||.||++. ...+.+.+|++..+.++..|++|++|++
T Consensus 83 na~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~ 159 (220)
T KOG3160|consen 83 NAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRL 159 (220)
T ss_pred CceeecCceEEEecCCHHHHhhhHHHHHHHHhhhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCch
Confidence 9999876699999999999999999999999999999999999999982 2445677899999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCceeeEEEECCEEeccc
Q 028973 165 GTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEV 199 (201)
Q Consensus 165 G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~d~ 199 (201)
|.+|+.+++.+|..+.|+|.|||||+|||+++.|+
T Consensus 160 g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~~~~ 194 (220)
T KOG3160|consen 160 GAKLLLKYAQETAALAPPHPWVPWILVNGQPLQDA 194 (220)
T ss_pred HHHHHHHHHHhhcccCCCCCCcCeEEECCcchHHH
Confidence 99999999999999999999999999999998764
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=7.1e-39 Score=243.98 Aligned_cols=107 Identities=40% Similarity=0.769 Sum_probs=94.6
Q ss_pred eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhcccccCcc
Q 028973 42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELN 121 (201)
Q Consensus 42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~~~~ 121 (201)
|+|+|||||+||||++||++||.|+|..+++.++|||+|||||||+...++.+|+|||||.||+||++|+|+++++++..
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~ 80 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN 80 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence 78999999999999999999999988555699999999999999998765457999999999999999999999999888
Q ss_pred cccceeeccccccccCcchhHHHHHhhcCC
Q 028973 122 KHFPFIYCIESLVYEHKYSQWETCFDKLEL 151 (201)
Q Consensus 122 ~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~ 151 (201)
.+|+||.||++... ...... |+++.+.
T Consensus 81 ~~~~~i~Cm~~~~~--~~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 81 AALPFIACMESSQD--FPKAIK-CAKKYGI 107 (108)
T ss_pred hhcCEEEEEcCCCC--Cchhhh-hHHhcCC
Confidence 88999999998743 223333 9998875
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.99 E-value=3.8e-09 Score=81.69 Aligned_cols=140 Identities=13% Similarity=0.065 Sum_probs=92.4
Q ss_pred CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS 116 (201)
Q Consensus 37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~ 116 (201)
..+.+++|.+|..-.||+|++|- ..|.+.+.+ ..+ +++.++||.-.... . -..-+.-.|+...
T Consensus 2 ~~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~--~~~-~~~~~~~~p~~~~~---~----------~~~~~~~~~~~~~ 64 (154)
T cd03023 2 NPNGDVTIVEFFDYNCGYCKKLA-PELEKLLKE--DPD-VRVVFKEFPILGES---S----------VLAARVALAVWKN 64 (154)
T ss_pred CCCCCEEEEEEECCCChhHHHhh-HHHHHHHHH--CCC-ceEEEEeCCccCcc---h----------HHHHHHHHHHHHh
Confidence 45689999999999999999994 567666654 443 66666666321110 0 0111222233221
Q ss_pred ccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973 117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (201)
Q Consensus 117 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~ 196 (201)
++..+++|..=+.........+.+...+...|++.+.+.+|.++++..+.+.+..+....+ ++..+||++|||+.+
T Consensus 65 --~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~~ 140 (154)
T cd03023 65 --GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTVI 140 (154)
T ss_pred --ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEEe
Confidence 3345566654443322111223456788999999999999999988888888888777665 478999999999976
Q ss_pred c
Q 028973 197 Y 197 (201)
Q Consensus 197 ~ 197 (201)
.
T Consensus 141 ~ 141 (154)
T cd03023 141 P 141 (154)
T ss_pred c
Confidence 4
No 4
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.87 E-value=1.1e-08 Score=81.75 Aligned_cols=137 Identities=18% Similarity=0.067 Sum_probs=94.1
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccccc
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP 118 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~ 118 (201)
+.+|+|.+|+.-.||+|++| ...+.+.+.+ ..+.+.|+++|......... ...+....+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-------------~aa~a~~aa~~--- 74 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNF-EPILEAWVKK--LPKDVKFEKVPVVFGGGEGE-------------PLARAFYAAEA--- 74 (178)
T ss_pred CCCcEEEEEECCCCcchhhh-hHHHHHHHHh--CCCCceEEEcCCccccccch-------------HHHHHHHHHHH---
Confidence 68999999999999999999 5778888887 67889999999864322100 11222222211
Q ss_pred Ccccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973 119 ELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193 (201)
Q Consensus 119 ~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING 193 (201)
...++.|..=+..... ....+.+...+...|++.+.+.+|.++++-.+.+.+..+....+ ++..+||++|||
T Consensus 75 -~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG 151 (178)
T cd03019 75 -LGLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNG 151 (178)
T ss_pred -cCcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECC
Confidence 1122333332222111 01134577899999999999999999888777787777776654 478999999999
Q ss_pred EEec
Q 028973 194 QPLY 197 (201)
Q Consensus 194 ~~~~ 197 (201)
+.+.
T Consensus 152 ~~~~ 155 (178)
T cd03019 152 KYVV 155 (178)
T ss_pred EEEE
Confidence 9864
No 5
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.79 E-value=7.6e-09 Score=81.25 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=93.7
Q ss_pred CCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhhhhHh
Q 028973 32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTV 109 (201)
Q Consensus 32 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~ 109 (201)
+...|..+.++.|++|..-.||+|++|. ..|.+++++ + .+.+.+.++|+--.... ...+-.+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~-~~~~~~~~~--~i~~~~v~~~~~~~~~~~~~-------------~~~a~~~ 67 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFH-EELEKLLKK--YIDPGKVKFVFRPVPLDKHS-------------SLRAAMA 67 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHH-HHHHHHHHH--HTTTTTEEEEEEESSSSHHH-------------HHHHHHH
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHH-HHHhhhhhh--ccCCCceEEEEEEccccchh-------------HHHHHHH
Confidence 3446788999999999999999999995 556677776 5 67888888888322211 3346667
Q ss_pred hhhhcccccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEE
Q 028973 110 EACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWV 189 (201)
Q Consensus 110 qaCal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I 189 (201)
..|+.+. + +.++.+..-+.+.... ... .+.=+...+.+.+.+.+|+++.+-...+.+..+..... ++..+|+|
T Consensus 68 ~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~ 140 (162)
T PF13462_consen 68 AECVADQ--G-KYFWFFHELLFSQQEN-FEN-KKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTF 140 (162)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHCHS-TSS-HHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEE
T ss_pred HHHHHHH--h-HHHHHHHHHHHHhhhc-cch-hHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEE
Confidence 7777555 2 3344444444433221 111 12222344555788999999887777776666666554 47899999
Q ss_pred EECCEEecc
Q 028973 190 VVDGQPLYE 198 (201)
Q Consensus 190 ~ING~~~~d 198 (201)
+|||+++.+
T Consensus 141 ~inG~~~~~ 149 (162)
T PF13462_consen 141 FINGKYVVG 149 (162)
T ss_dssp EETTCEEET
T ss_pred EECCEEeCC
Confidence 999999854
No 6
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.40 E-value=2.6e-06 Score=71.16 Aligned_cols=142 Identities=11% Similarity=-0.005 Sum_probs=82.4
Q ss_pred CCceEEEEEEEecChhhHHHHHHhH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS 116 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~ 116 (201)
..+.+|..|..=.||+|.+|- ..| .+.|.+ .+.+-+.+..+|+.-.... + +.--.......|+-..
T Consensus 36 ~~~~~VvEffdy~CphC~~~~-~~l~~~~~~~~-~~~~~v~~~~~~~~f~~~~-~---------~~~~~a~~~a~~~~~~ 103 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFE-EVYHVSDNVKK-KLPEGTKMTKYHVEFLGPL-G---------KELTQAWAVAMALGVE 103 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhc-ccccchHHHHH-hCCCCCeEEEecccccchh-h---------HHHHHHHHHHHHhCcH
Confidence 457889999999999999993 333 356655 4566666665554211100 0 0000011111111000
Q ss_pred ccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973 117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (201)
Q Consensus 117 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~ 196 (201)
-.-....++.+ +........+.+...+...|+|.+.+.+|.++..-.+.+.+..+.+..+ +++.||+++|||+++
T Consensus 104 ~k~~~~lf~~i---~~~~~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGky~ 178 (207)
T PRK10954 104 DKVTPPLFEGV---QKTQTIQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGKYM 178 (207)
T ss_pred HHHHHHHHHHH---HccCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCEEE
Confidence 00000111222 1111111223466778889999999999999987777777777776654 579999999999986
Q ss_pred c
Q 028973 197 Y 197 (201)
Q Consensus 197 ~ 197 (201)
-
T Consensus 179 v 179 (207)
T PRK10954 179 V 179 (207)
T ss_pred E
Confidence 3
No 7
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.71 E-value=0.00031 Score=57.22 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=91.3
Q ss_pred EEEEEEecChhhHHHHHHhHHHHHhhccCC--cceeEEEEeeecceecC--CC---CceeecCChh--------------
Q 028973 44 LGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRA--NN---STFDCQHGPS-------------- 102 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~~--~~---~~f~CQHG~~-------------- 102 (201)
|++|+.-.||.|--. ..+|....+. +. +-++|++.||+-..... ++ ..+.=++|..
T Consensus 1 I~~~~D~~cP~cyl~-~~~l~~~~~~--~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a 77 (201)
T cd03024 1 IDIWSDVVCPWCYIG-KRRLEKALAE--LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAA 77 (201)
T ss_pred CeEEecCcCccHHHH-HHHHHHHHHh--CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 579999999999988 4678777765 43 35899999996332211 10 0000011110
Q ss_pred -----------hhhhhHhhhhhcccc-cCcccccceeecccccccc-----CcchhHHHHHhhcCCCchhhhhcccCchh
Q 028973 103 -----------ECLLNTVEACAIDSW-PELNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIVDCYTSGYG 165 (201)
Q Consensus 103 -----------EC~gN~~qaCal~~~-~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G 165 (201)
.-..|...+|.+-.. .....+.+|..-++..... ...+.+...+...|+|.+.+.++.++++.
T Consensus 78 ~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 157 (201)
T cd03024 78 AAEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY 157 (201)
T ss_pred HHcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc
Confidence 000133333222111 1123455665555543211 12234678899999999999999999988
Q ss_pred HHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973 166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (201)
Q Consensus 166 ~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~ 196 (201)
++.+.+..++...+ ++..+||++|||+++
T Consensus 158 ~~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~ 186 (201)
T cd03024 158 ADEVRADEARARQL--GISGVPFFVFNGKYA 186 (201)
T ss_pred chHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence 88888888776654 589999999999854
No 8
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.49 E-value=0.00055 Score=55.31 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=89.6
Q ss_pred eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCC-------------------CceeecCChh
Q 028973 42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-------------------STFDCQHGPS 102 (201)
Q Consensus 42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-------------------~~f~CQHG~~ 102 (201)
++|.+|+.-+||.|-.. ..+|..+.+. +...++|++.+++=....... .+..-+.++.
T Consensus 1 ~~i~~~~D~~cp~c~~~-~~~l~~l~~~--~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (193)
T cd03025 1 LELYYFIDPLCGWCYGF-EPLLEKLKEE--YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYL 77 (193)
T ss_pred CeEEEEECCCCchhhCc-hHHHHHHHHH--hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhH
Confidence 47899999999999988 4566666654 544588888877633221100 0000011111
Q ss_pred hhh---hhHhhhhhccc---ccCcccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHH
Q 028973 103 ECL---LNTVEACAIDS---WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK 171 (201)
Q Consensus 103 EC~---gN~~qaCal~~---~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~ 171 (201)
+=. .|...++..-. .....+..+|..-++.... .+..+.....+...|+|.+.+.++.++.+.++.+.+
T Consensus 78 ~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~ 157 (193)
T cd03025 78 ELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQE 157 (193)
T ss_pred hcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence 000 01111211110 0122355666666654311 122235678899999999999999999999999998
Q ss_pred HHHHhccCCCCCceeeEEEECCE
Q 028973 172 YAAETNSLVPPHQYVPWVVVDGQ 194 (201)
Q Consensus 172 ~~~~T~~l~p~~~~vP~I~ING~ 194 (201)
..+...++ ++..+||++|++.
T Consensus 158 ~~~~a~~~--gv~g~Ptfvv~~~ 178 (193)
T cd03025 158 DQKLAREL--GINGFPTLVLEDD 178 (193)
T ss_pred HHHHHHHc--CCCccCEEEEEeC
Confidence 88887665 4789999999654
No 9
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.30 E-value=0.00032 Score=56.48 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=83.0
Q ss_pred EEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeeccee---cCC--CCc--------------------eee
Q 028973 43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKI---RAN--NST--------------------FDC 97 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~---~~~--~~~--------------------f~C 97 (201)
+|++|+.-.||.|-.+. ..|..+... ..+ ++|++.||.-... ..+ ... +.-
T Consensus 1 ~i~~~~D~~Cp~cy~~~-~~l~~l~~~--~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~ 76 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLAS-PRLRKLRAE--YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPF 76 (193)
T ss_dssp EEEEEEBTTBHHHHHHH-HHHHHHHHH--HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--T
T ss_pred CEEEEEeCCCHHHHHHH-HHHHHHHHH--hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcc
Confidence 68999999999999994 567766664 323 8999999852222 111 001 000
Q ss_pred cCChhhhhhhHhhhhhc-ccccCcccccceeeccccc-----cccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHH
Q 028973 98 QHGPSECLLNTVEACAI-DSWPELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK 171 (201)
Q Consensus 98 QHG~~EC~gN~~qaCal-~~~~~~~~~~~fI~C~~~~-----~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~ 171 (201)
...+.. .+|-..+..+ ..........++..=+.+. ...+..+.+...+...|+|.+.+.+-.+++.+++.+.+
T Consensus 77 ~~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~ 155 (193)
T PF01323_consen 77 NFPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEE 155 (193)
T ss_dssp BTSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHH
T ss_pred cCCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHH
Confidence 000000 0122222221 1111111112222222111 11122344678899999999999999999999999998
Q ss_pred HHHHhccCCCCCceeeEEEECCE
Q 028973 172 YAAETNSLVPPHQYVPWVVVDGQ 194 (201)
Q Consensus 172 ~~~~T~~l~p~~~~vP~I~ING~ 194 (201)
..++..++ ++..|||++|||+
T Consensus 156 ~~~~a~~~--gv~GvP~~vv~g~ 176 (193)
T PF01323_consen 156 DTAEARQL--GVFGVPTFVVNGK 176 (193)
T ss_dssp HHHHHHHT--TCSSSSEEEETTT
T ss_pred HHHHHHHc--CCcccCEEEECCE
Confidence 88887665 4899999999998
No 10
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0015 Score=55.18 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=88.9
Q ss_pred CCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCc-ceeEEEEeeecceecCCCCceeecCChhhhhhhHhh
Q 028973 32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS-IVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVE 110 (201)
Q Consensus 32 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~-~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~q 110 (201)
+...+....+|+|.+|.+-.||+|.+.+ ..|...+.. ..+ ...++.+||-.-... .|++ +....
T Consensus 76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~-~~l~~~~i~--~~~~~~~~~~~~f~~~~~~------~~~~------a~~~~ 140 (244)
T COG1651 76 DVVLGNPYAPVTVVEFFDYTCPYCKEAF-PELKKKYID--DGKVRLVLREFPFLDPACP------YCRR------AAQAA 140 (244)
T ss_pred cccccCCCCCceEEEEecCcCccHHHHH-HHHHHHhhh--cCCCceEEEEeecCCCCcH------HHHH------HHHHH
Confidence 3446667779999999999999996664 344444332 222 234444444322110 1443 67777
Q ss_pred hhhcccccCcccccceeeccccccccCcchhHHHHHhhcC-CC--c--hhhhhcccCchhHHHHHHHHHHhccCCCCCce
Q 028973 111 ACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLE-LD--P--KPIVDCYTSGYGTQLELKYAAETNSLVPPHQY 185 (201)
Q Consensus 111 aCal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g-~~--~--~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~ 185 (201)
.|+.+.-. .++|.|..=+.+.... ....+..|..... .. . .....|.+......+..+..+....+ +++.
T Consensus 141 ~~~~~~~~--~~y~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~g 215 (244)
T COG1651 141 RCAADQGI--VRYWAFHDALFGSQAE-AWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL--GVNG 215 (244)
T ss_pred HHhccccc--hhHHHHHHHHhhcccc-chhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--CCCc
Confidence 88855432 4688888888765421 2333445554332 11 1 46677766445667777777665554 4899
Q ss_pred eeEEEECCEEec
Q 028973 186 VPWVVVDGQPLY 197 (201)
Q Consensus 186 vP~I~ING~~~~ 197 (201)
+|+++|||+.++
T Consensus 216 TPt~~v~~~~~~ 227 (244)
T COG1651 216 TPTFIVNGKLVP 227 (244)
T ss_pred CCeEEECCeeec
Confidence 999999998653
No 11
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.26 E-value=0.0011 Score=54.37 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=83.6
Q ss_pred EEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCC-CceeecCChh--hhhhhHhhhhh---cccccC
Q 028973 46 LYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-STFDCQHGPS--ECLLNTVEACA---IDSWPE 119 (201)
Q Consensus 46 vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-~~f~CQHG~~--EC~gN~~qaCa---l~~~~~ 119 (201)
+|+--+||.|-.+ ...|..+... +...+++++||.|+.+..... ....+.+..- +=......+|. ...+..
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~~--~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg 78 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKEE--YGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG 78 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHHH--S-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred eeeCCCChHHHHh-HHHHHHHHHH--cCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence 4677799999998 4556666665 899999999999998753220 1111111111 11122333331 111224
Q ss_pred cccccceeecccccccc-----CcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973 120 LNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193 (201)
Q Consensus 120 ~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING 193 (201)
.++...|+.-|++.... ...+....||++.|+|.+.+.+=.+++..++.+.+--+.+..+. ++..|+++|.+
T Consensus 79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~ 155 (176)
T PF13743_consen 79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN 155 (176)
T ss_dssp -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence 46677888888764321 12245779999999999999888899999999998888888776 78999999855
No 12
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=96.47 E-value=0.0059 Score=49.09 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=47.6
Q ss_pred hhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973 140 SQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (201)
Q Consensus 140 ~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~ 196 (201)
+.+..+++..|+|.+.+.++.++++..+.+.+..+...++ ++..||+++|||+.+
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~ 178 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF 178 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence 3467899999999999999999998888888888776655 589999999999986
No 13
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.44 E-value=0.0097 Score=41.51 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=33.0
Q ss_pred EEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecce
Q 028973 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~ 87 (201)
|.+|+.-.||.|..+ ..+|.+.... ..+.++++++|+.-..
T Consensus 1 i~~f~d~~Cp~C~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLF-EPELEKLLYA--DDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhh-hHHHHHHHhh--cCCcEEEEEeccccCC
Confidence 568999999999999 4678887643 6788999999987554
No 14
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.04 E-value=0.025 Score=48.50 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=96.6
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCccee--EEEEeeeccee-cCC----------CCce----eecCC
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVD--LHLSPWGNAKI-RAN----------NSTF----DCQHG 100 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~id--l~lvP~G~a~~-~~~----------~~~f----~CQHG 100 (201)
...+++|+||..-.||.|--. +..|-..... +.+.++ ++..||--... ... .++. .=-|.
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~--~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~ 78 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAE--YPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHA 78 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHHh--cCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHH
Confidence 357899999999999999766 5566666665 555544 55566642211 000 0000 00000
Q ss_pred h-----hh-----------hhhhHhhhhhccccc-Ccc-cccceeecccccccc-----CcchhHHHHHhhcCCCchhhh
Q 028973 101 P-----SE-----------CLLNTVEACAIDSWP-ELN-KHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIV 157 (201)
Q Consensus 101 ~-----~E-----------C~gN~~qaCal~~~~-~~~-~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~ 157 (201)
. .| =..|-+.+|-+-++- ... .+..|+.=+.+..+. +..+.+-.||..+|+|.+.++
T Consensus 79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~ 158 (225)
T COG2761 79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK 158 (225)
T ss_pred HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence 0 01 123445666555442 122 467777766554332 234557799999999999999
Q ss_pred hcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973 158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196 (201)
Q Consensus 158 ~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~ 196 (201)
+=..++...+=++.-.+....+ .++.||+++|+|++.
T Consensus 159 ~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~ 195 (225)
T COG2761 159 ADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYA 195 (225)
T ss_pred HHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEe
Confidence 9999988888777777776654 589999999977654
No 15
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.21 E-value=0.11 Score=44.43 Aligned_cols=45 Identities=7% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (201)
Q Consensus 35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (201)
.+..+.+.+|.+|..-.||+|+++- .+|.+. .+ .-+.+++++|.-
T Consensus 102 ~g~~~~k~~I~vFtDp~CpyCkkl~-~~l~~~-~~----~~v~v~~~~~P~ 146 (232)
T PRK10877 102 YKAPQEKHVITVFTDITCGYCHKLH-EQMKDY-NA----LGITVRYLAFPR 146 (232)
T ss_pred ecCCCCCEEEEEEECCCChHHHHHH-HHHHHH-hc----CCeEEEEEeccC
Confidence 3455778899999999999999994 445443 32 227777776664
No 16
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.24 E-value=0.099 Score=45.19 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecc
Q 028973 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA 86 (201)
Q Consensus 35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a 86 (201)
.+..+.+..|.||..-.||+|++| ...+.|..+. ..+.++++|++-.
T Consensus 112 ~g~~~ak~~I~vFtDp~CpyC~kl-~~~l~~~~~~----g~V~v~~ip~~~l 158 (251)
T PRK11657 112 DGKADAPRIVYVFADPNCPYCKQF-WQQARPWVDS----GKVQLRHILVGII 158 (251)
T ss_pred ccCCCCCeEEEEEECCCChhHHHH-HHHHHHHhhc----CceEEEEEecccc
Confidence 456678999999999999999999 4667776654 4588999998753
No 17
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=89.72 E-value=0.64 Score=38.08 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=35.2
Q ss_pred CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecce
Q 028973 35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87 (201)
Q Consensus 35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~ 87 (201)
.+..+.++.|.+|..-.||+|+++. ..|.+ . .+-+.++++||+-..
T Consensus 72 ~g~~~~~~~i~~f~D~~Cp~C~~~~-~~l~~--~----~~~v~v~~~~~p~~~ 117 (197)
T cd03020 72 YGKGNGKRVVYVFTDPDCPYCRKLE-KELKP--N----ADGVTVRIFPVPILG 117 (197)
T ss_pred EcCCCCCEEEEEEECCCCccHHHHH-HHHhh--c----cCceEEEEEEcCcCC
Confidence 4566789999999999999999994 56665 2 245788888886443
No 18
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=87.76 E-value=1.1 Score=29.71 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=15.8
Q ss_pred eEEEEEEEecChhhHHH
Q 028973 42 VKLGLYYESLCPYSANF 58 (201)
Q Consensus 42 V~V~vyyESlCPd~~~F 58 (201)
|+|.+|+.+-||.|++.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 78999999999999877
No 19
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=86.48 E-value=1.5 Score=29.90 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 42 VKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
|+|.+|+-+-||.|+.. ...|..+...
T Consensus 1 ~~v~~f~~~~C~~C~~~-~~~l~~l~~~ 27 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAA-KRVVEEVAKE 27 (82)
T ss_pred CEEEEEECCCCcchHHH-HHHHHHHHHH
Confidence 78999999999999987 3455555443
No 20
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=85.89 E-value=1.5 Score=34.14 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=27.5
Q ss_pred CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (201)
Q Consensus 37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (201)
.-..++++.|+.|+=||||++++ =.|..+.+ ....++++++.-..
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~v-P~l~kiae---~~p~i~~~~i~rd~ 82 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNV-PVLAKIAE---ANPNIEVRIILRDE 82 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHH-HHHHHHHH---H-TTEEEEEE-HHH
T ss_pred hcCCCcEEEEEECCCchhHHHHH-HHHHHHHH---hCCCCeEEEEEecC
Confidence 44678899999999999999985 34554444 34578888887653
No 21
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=83.69 E-value=1.8 Score=35.77 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=36.5
Q ss_pred HHHHhhcCCCchhhh---hcccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973 143 ETCFDKLELDPKPIV---DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193 (201)
Q Consensus 143 ~~Ca~~~g~~~~~i~---~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING 193 (201)
..++...|+|++... .-..++++++.+.+..++..+ -++..||+++||+
T Consensus 136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~--~Gv~GVP~fvv~~ 187 (209)
T cd03021 136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALK--YGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 589999999865544 444677777777777766544 4689999999964
No 22
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=83.69 E-value=1.5 Score=33.25 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=24.5
Q ss_pred CchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 162 SGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 162 ~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
.++|.+++....+.|.+ +.||.|+|||+.+|
T Consensus 49 ~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 49 DEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIG 79 (104)
T ss_pred CCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEc
Confidence 36777888888776642 48999999999986
No 23
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=82.66 E-value=2.9 Score=30.87 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 142 ~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
.++-.+..|++... ..--..+.+.+++.+..+.|. ...||.|+|||+++|
T Consensus 24 ak~~L~~~~i~~~~-vdid~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 24 VKRLLLTLGVNPAV-HEIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHHHcCCCCEE-EEcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence 34455666765542 222245677888888877662 468999999999986
No 24
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=80.68 E-value=0.86 Score=37.15 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=35.5
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcc---eeEEEEeeecceecCCCCceeecCChh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSI---VDLHLSPWGNAKIRANNSTFDCQHGPS 102 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~---idl~lvP~G~a~~~~~~~~f~CQHG~~ 102 (201)
..||-+-.|.-.-||.||.| +-.|.++|+. +.+- +.|-+|-.-....+. ..-+.++||+-
T Consensus 32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~--l~~~~~~fEVvfVS~D~~~~~~-~~y~~~~~~~W 94 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYEE--LKDNAAPFEVVFVSSDRDEESL-DEYMLEHHGDW 94 (157)
T ss_pred CCcEEEEEEEEEECCchhhC-CchHHHHHHH--HHhcCCceEEEEEecCCCHHHH-HHHHHhcCCCe
Confidence 34766666667789999999 7888888876 5443 443333322222111 13456666553
No 25
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=79.99 E-value=4 Score=29.51 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~ 83 (201)
=..+|+|.+|+..-||+|... .+++.-+.. ..+.+++..+=.
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~--~~~~~~l~~--~~~~i~~~~vd~ 51 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDV--VQALNLMAV--LNPNIEHEMIDG 51 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHH--HHHHHHHHH--HCCCceEEEEEh
Confidence 367999999999999999965 455555544 334455555443
No 26
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=77.76 E-value=7.2 Score=27.35 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=30.9
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHhhccCC--cceeEEEEeee
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWG 84 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G 84 (201)
.|+.+-.|+.+-||.|++++ ..|...+++ +. +.++|=.|...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~~--~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYKK--YKKKDDVEFVFVSLD 44 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHHH--HTTTTTEEEEEEE-S
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHHH--hCCCCCEEEEEEEeC
Confidence 37889999999999999995 678888776 55 56666666553
No 27
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=74.43 E-value=6.5 Score=26.70 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEecc
Q 028973 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198 (201)
Q Consensus 142 ~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~d 198 (201)
+++.++..|++++.+ ...... ....+..+.+ + ...+|.|+|||+.+|.
T Consensus 17 a~~~L~~~gi~~~~~-di~~~~---~~~~el~~~~----g-~~~vP~v~i~~~~iGg 64 (73)
T cd03027 17 VRLFLREKGLPYVEI-NIDIFP---ERKAELEERT----G-SSVVPQIFFNEKLVGG 64 (73)
T ss_pred HHHHHHHCCCceEEE-ECCCCH---HHHHHHHHHh----C-CCCcCEEEECCEEEeC
Confidence 556777888877654 222322 2222222222 2 2578999999999864
No 28
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=71.21 E-value=8.6 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=20.4
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHH
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKI 66 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~ 66 (201)
...+-.|-+|+.--||+|+++ ..++.+.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~-~~~~~~~ 30 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKL-EKELFPD 30 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHH-HHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHH-HHHHHHH
Confidence 356778899999999999998 4666653
No 29
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=70.27 E-value=4.8 Score=28.03 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=18.1
Q ss_pred CCCCceEEEEEEEecChhhHHH
Q 028973 37 DVNSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 37 ~~~~kV~V~vyyESlCPd~~~F 58 (201)
+...+-+|+||..+.||+|++-
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~a 24 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKA 24 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHH
Confidence 3445557899999999999987
No 30
>PHA03050 glutaredoxin; Provisional
Probab=69.54 E-value=6.4 Score=29.64 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 166 ~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
.++..+..+.|. .+.||.|+|||+++|
T Consensus 55 ~~~~~~l~~~tG-----~~tVP~IfI~g~~iG 81 (108)
T PHA03050 55 NELRDYFEQITG-----GRTVPRIFFGKTSIG 81 (108)
T ss_pred HHHHHHHHHHcC-----CCCcCEEEECCEEEe
Confidence 344555555542 368999999999985
No 31
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=68.89 E-value=4.7 Score=26.31 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.4
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|++|....||+|++.
T Consensus 1 V~vy~~~~C~~C~~~ 15 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA 15 (60)
T ss_dssp EEEEESTTSHHHHHH
T ss_pred cEEEEcCCCcCHHHH
Confidence 678888888888877
No 32
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=68.76 E-value=3.8 Score=28.80 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.6
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|++|+.+-||.|.+.
T Consensus 2 ~v~iy~~~~C~~C~~a 17 (85)
T PRK11200 2 FVVIFGRPGCPYCVRA 17 (85)
T ss_pred EEEEEeCCCChhHHHH
Confidence 6888888888888877
No 33
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=68.36 E-value=8.5 Score=25.03 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.6
Q ss_pred CCceeeEEEECCEEe
Q 028973 182 PHQYVPWVVVDGQPL 196 (201)
Q Consensus 182 ~~~~vP~I~ING~~~ 196 (201)
+...+|+|+|||+++
T Consensus 46 g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 46 GVRTVPQVFIDGKFI 60 (60)
T ss_dssp SSSSSSEEEETTEEE
T ss_pred CCCccCEEEECCEEC
Confidence 357899999999975
No 34
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=68.05 E-value=16 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCc
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS 74 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~ 74 (201)
++++.+.+|+.+-||.|+.+. ..|-++.+. +.+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~-~~l~~l~~~--~~~ 44 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLK-PILNKVIDE--FDG 44 (97)
T ss_pred CCCeEEEEEECCCChhHHHHH-HHHHHHHHH--hCC
Confidence 677889999999999999994 456565554 544
No 35
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=67.94 E-value=4.8 Score=26.01 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=14.1
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|.+|....||+|++.
T Consensus 1 ~v~ly~~~~Cp~C~~~ 16 (72)
T cd02066 1 KVVVFSKSTCPYCKRA 16 (72)
T ss_pred CEEEEECCCCHHHHHH
Confidence 4789999999999987
No 36
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=67.50 E-value=4.8 Score=26.89 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=14.4
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|++|+-+.||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 4789999999999986
No 37
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=66.16 E-value=5.6 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=14.4
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|.+|+...||+|.+.
T Consensus 1 ~v~~y~~~~Cp~C~~~ 16 (82)
T cd03419 1 PVVVFSKSYCPYCKRA 16 (82)
T ss_pred CEEEEEcCCCHHHHHH
Confidence 4789999999999987
No 38
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=63.17 E-value=6.5 Score=26.41 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=14.1
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|.+|..+.||+|.+.
T Consensus 1 ~i~ly~~~~Cp~C~~a 16 (75)
T cd03418 1 KVEIYTKPNCPYCVRA 16 (75)
T ss_pred CEEEEeCCCChHHHHH
Confidence 3789999999999987
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=62.31 E-value=18 Score=25.31 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.5
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEE
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHL 80 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~l 80 (201)
.+.-+..||.+-|+.|+++. .++..+.+. +.+..++.+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~-~~~~~~~~~--~~~~~~~~~ 55 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALA-PIYEELAEK--LKGDDNVVI 55 (104)
T ss_pred CCcEEEEEECCCCHHHHHHh-hHHHHHHHH--hcCCCCEEE
Confidence 36677889999999999983 556555554 545434444
No 40
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=59.02 E-value=7.5 Score=26.47 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=13.7
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|.+|+...||+|++.
T Consensus 1 V~~f~~~~Cp~C~~~ 15 (84)
T TIGR02180 1 VVVFSKSYCPYCKKA 15 (84)
T ss_pred CEEEECCCChhHHHH
Confidence 579999999999988
No 41
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=57.42 E-value=11 Score=26.33 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.3
Q ss_pred CceeeEEEECCEEec
Q 028973 183 HQYVPWVVVDGQPLY 197 (201)
Q Consensus 183 ~~~vP~I~ING~~~~ 197 (201)
...||.|+|||++++
T Consensus 56 ~~~vP~ifi~g~~ig 70 (85)
T PRK11200 56 VETVPQIFVDQKHIG 70 (85)
T ss_pred CCcCCEEEECCEEEc
Confidence 468999999999986
No 42
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=57.39 E-value=8.4 Score=26.10 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.8
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|+||.-+.||+|++-
T Consensus 2 ~v~ly~~~~C~~C~ka 17 (73)
T cd03027 2 RVTIYSRLGCEDCTAV 17 (73)
T ss_pred EEEEEecCCChhHHHH
Confidence 5889999999999987
No 43
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=57.36 E-value=25 Score=25.08 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=30.5
Q ss_pred hHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEecc
Q 028973 141 QWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198 (201)
Q Consensus 141 ~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~d 198 (201)
..++..+..|++.+.+.-= . ..++..+..+.|. ...||.|+|||++++.
T Consensus 28 ~ak~~L~~~~i~y~~idv~-~---~~~~~~~l~~~~g-----~~tvP~vfi~g~~iGG 76 (90)
T cd03028 28 KVVQILNQLGVDFGTFDIL-E---DEEVRQGLKEYSN-----WPTFPQLYVNGELVGG 76 (90)
T ss_pred HHHHHHHHcCCCeEEEEcC-C---CHHHHHHHHHHhC-----CCCCCEEEECCEEEeC
Confidence 3456677778776655421 1 1344444444442 3579999999999864
No 44
>PHA03050 glutaredoxin; Provisional
Probab=57.27 E-value=9.2 Score=28.78 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=14.8
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|.||.-+-||+|++-
T Consensus 14 ~V~vys~~~CPyC~~a 29 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA 29 (108)
T ss_pred CEEEEECCCChHHHHH
Confidence 5899999999999987
No 45
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=57.06 E-value=6.3 Score=30.39 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=28.5
Q ss_pred ecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeeccee
Q 028973 50 SLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKI 88 (201)
Q Consensus 50 SlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~ 88 (201)
-.||||... +-|+-.+-. +.+.+||+.|+|.+-+.
T Consensus 22 f~Cp~c~~i--EGlLa~~P~--l~~~ldV~rV~f~RPR~ 56 (112)
T PF11287_consen 22 FYCPHCAAI--EGLLASFPD--LRERLDVRRVDFPRPRQ 56 (112)
T ss_pred EECCchHHH--HhHHhhChh--hhhcccEEEeCCCCchH
Confidence 469999976 567766665 88999999999998774
No 46
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=56.51 E-value=9.7 Score=28.01 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=14.9
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|+||.-+.||+|.+.
T Consensus 9 ~Vvvysk~~Cp~C~~a 24 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVV 24 (99)
T ss_pred CEEEEECCCCHHHHHH
Confidence 5899999999999988
No 47
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=55.83 E-value=22 Score=24.72 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCc
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS 74 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~ 74 (201)
..+.-|..||...||.|+++ ...+..+.+. +.+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~-~~~~~~~~~~--~~~ 48 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAF-KPILEKLAKE--YKD 48 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHH-HHHHHHHHHH--TTT
T ss_pred cCCCEEEEEeCCCCCccccc-cceecccccc--ccc
Confidence 35677888888999999998 4555555554 554
No 48
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=55.41 E-value=25 Score=25.71 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 142 ~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
.++-.+..|++...+.- .++ .++..+..+.|. ...||.|+|||+.+|
T Consensus 33 ak~lL~~~~i~~~~~di-~~~---~~~~~~l~~~tg-----~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 33 AVQILKACGVPFAYVNV-LED---PEIRQGIKEYSN-----WPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHHcCCCEEEEEC-CCC---HHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 44556667777654432 122 334444444442 358999999999985
No 49
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=55.34 E-value=24 Score=20.76 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEe
Q 028973 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP 82 (201)
|.+|+.+-||+|++.. .++... .. ..+.+++..+.
T Consensus 1 l~~~~~~~c~~c~~~~-~~~~~~-~~--~~~~~~~~~~~ 35 (69)
T cd01659 1 LVLFYAPWCPFCQALR-PVLAEL-AL--LNKGVKFEAVD 35 (69)
T ss_pred CEEEECCCChhHHhhh-hHHHHH-Hh--hCCCcEEEEEE
Confidence 4678999999999983 445443 22 33444444444
No 50
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=54.44 E-value=11 Score=26.65 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=13.7
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|++|.-+-||+|.+-
T Consensus 2 ~v~iyt~~~CPyC~~a 17 (80)
T COG0695 2 NVTIYTKPGCPYCKRA 17 (80)
T ss_pred CEEEEECCCCchHHHH
Confidence 5788999999999887
No 51
>PF13728 TraF: F plasmid transfer operon protein
Probab=54.10 E-value=12 Score=31.67 Aligned_cols=40 Identities=23% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (201)
-..+.-+-+||++.||.|+.|. |++.. +.+.-.|+++|+-
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~-----pil~~--~~~~yg~~v~~vs 157 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQA-----PILQQ--FADKYGFSVIPVS 157 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHH-----HHHHH--HHHHhCCEEEEEe
Confidence 3477889999999999999873 44443 4455577787774
No 52
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=10 Score=26.88 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred HhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 146 FDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 146 a~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
+...|++.+.+.-=... + ...+++.++.. +.+.||.|+|||++++
T Consensus 21 L~~~g~~~~~i~~~~~~--~-~~~~~~~~~~~----g~~tvP~I~i~~~~ig 65 (80)
T COG0695 21 LDRKGVDYEEIDVDDDE--P-EEAREMVKRGK----GQRTVPQIFIGGKHVG 65 (80)
T ss_pred HHHcCCCcEEEEecCCc--H-HHHHHHHHHhC----CCCCcCEEEECCEEEe
Confidence 44567666655433332 2 23333333321 4579999999999885
No 53
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=53.07 E-value=11 Score=25.71 Aligned_cols=15 Identities=27% Similarity=0.813 Sum_probs=13.2
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|++|....||+|.+-
T Consensus 1 v~ly~~~~Cp~C~~a 15 (79)
T TIGR02181 1 VTIYTKPYCPYCTRA 15 (79)
T ss_pred CEEEecCCChhHHHH
Confidence 578999999999987
No 54
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=52.79 E-value=15 Score=24.66 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=14.6
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|++|..+-||+|.+-
T Consensus 2 ~v~lys~~~Cp~C~~a 17 (72)
T cd03029 2 SVSLFTKPGCPFCARA 17 (72)
T ss_pred eEEEEECCCCHHHHHH
Confidence 5899999999999988
No 55
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=52.70 E-value=29 Score=24.07 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.9
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHH
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVK 65 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P 65 (201)
..++.+..|+.+-||.|+.+. .++..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~-~~~~~ 37 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA-PEYEK 37 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC-hHHHH
Confidence 578899999999999999984 34433
No 56
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=52.17 E-value=8.2 Score=25.09 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.7
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|++|+-+.||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 789999999999975
No 57
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=52.05 E-value=13 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=14.1
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|++|+..-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 4789999999999985
No 58
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=52.01 E-value=13 Score=26.35 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=13.8
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|+||..+-||+|.+.
T Consensus 2 V~vys~~~Cp~C~~a 16 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA 16 (86)
T ss_pred EEEEeCCCCccHHHH
Confidence 789999999999987
No 59
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=51.85 E-value=34 Score=25.44 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEe
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP 82 (201)
..|+.|-.|+-+-||.|++.+ ..|...+++ +.+ -++.++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~-p~l~~l~~~--~~~-~~~~vi~ 61 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTL-PYLTDLEQK--YKD-DGLVVIG 61 (126)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHH--cCc-CCeEEEE
Confidence 568889999999999999985 567777776 554 2455543
No 60
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=51.67 E-value=42 Score=23.46 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.3
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
.+.-+..+|..-|+.|+++. ..+..+.+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~-~~~~~~~~ 45 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLA-PEWKKAAK 45 (103)
T ss_pred CCcEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 45567778889999999993 33444443
No 61
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=51.17 E-value=25 Score=33.14 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=37.2
Q ss_pred HHHHhhhccCCCCCCCCC---CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEE
Q 028973 17 YITLFCFLSGSVSASRTS---PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS 81 (201)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~---~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lv 81 (201)
.++|.-...+-+..++.+ ...-+.+++|.+|+...||+|.+.+ ..+..+- . ....|..+.|
T Consensus 90 i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v-~~~~~~a-~--~~~~i~~~~i 153 (517)
T PRK15317 90 VLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVV-QALNLMA-V--LNPNITHTMI 153 (517)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHH-HHHHHHH-H--hCCCceEEEE
Confidence 345555555555555554 2344679999999999999999764 3333332 2 2344555554
No 62
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=51.09 E-value=25 Score=32.59 Aligned_cols=56 Identities=9% Similarity=-0.037 Sum_probs=33.4
Q ss_pred hHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 141 QWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 141 ~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
.+++.++..|++.+.|.- -+.+...+++.+..+.-....-+...||.|+|||++++
T Consensus 17 ~aK~~L~~~gi~~~~idi-~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ig 72 (410)
T PRK12759 17 LAKSWFGANDIPFTQISL-DDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIG 72 (410)
T ss_pred HHHHHHHHCCCCeEEEEC-CCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEe
Confidence 356778888887664332 24455555555543210001123578999999999885
No 63
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=50.60 E-value=46 Score=22.48 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.6
Q ss_pred ceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 41 KVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 41 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
+..|..|+..-||.|+.+. ..+..+.+.
T Consensus 16 ~~~~v~f~~~~C~~C~~~~-~~~~~~~~~ 43 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALA-PEYEKLAKE 43 (101)
T ss_pred CcEEEEEECCCCHHHHhhh-HHHHHHHHH
Confidence 3778888999999999994 445554443
No 64
>PRK10824 glutaredoxin-4; Provisional
Probab=49.99 E-value=12 Score=28.82 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973 142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197 (201)
Q Consensus 142 ~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~ 197 (201)
+.+-.+..|++...+.-=. ..++.....+.|. ...||-|+|||+++|
T Consensus 36 ak~lL~~~~i~~~~idi~~----d~~~~~~l~~~sg-----~~TVPQIFI~G~~IG 82 (115)
T PRK10824 36 AVQALSACGERFAYVDILQ----NPDIRAELPKYAN-----WPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHcCCCceEEEecC----CHHHHHHHHHHhC-----CCCCCeEEECCEEEc
Confidence 3444555566554432211 1234444444442 359999999999996
No 65
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=49.72 E-value=37 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
..+..|..||-.-||.|+++. ..+..+.+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~-~~~~~~a~ 45 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLK-PEYAKAAK 45 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhC-hHHHHHHH
Confidence 356688889999999999883 34444443
No 66
>PRK10638 glutaredoxin 3; Provisional
Probab=49.15 E-value=17 Score=25.29 Aligned_cols=16 Identities=19% Similarity=0.688 Sum_probs=14.6
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|++|..+.||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 5889999999999987
No 67
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=49.04 E-value=40 Score=23.91 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=16.8
Q ss_pred CCceEEEEEEEecChhhHHH
Q 028973 39 NSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~F 58 (201)
..++.|..||-.-||.|+++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~ 37 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQAL 37 (104)
T ss_pred CCCeEEEEEECCCCHHHHHH
Confidence 34577888999999999998
No 68
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=48.81 E-value=33 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=19.8
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
.+.-|..|+.+-||+|+.| .-.|.+..+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~-~P~l~~~~~ 50 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKF-SGTLSGVVA 50 (122)
T ss_pred CCcEEEEEECCCChhHHHH-hHHHHHHHH
Confidence 4446788999999999998 344444444
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=48.04 E-value=54 Score=23.48 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=21.1
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
.+..|..||.+-||.|+.+. ..|-.+.++
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~-p~~~~l~~~ 49 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIA-PILDEIADE 49 (109)
T ss_pred CCeEEEEEECCCCHHHHHHh-HHHHHHHHH
Confidence 55678888899999999983 445555544
No 70
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=47.68 E-value=16 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.531 Sum_probs=24.7
Q ss_pred EEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (201)
|-+|+.+-||.|++++ -.|....++ . .++++++.
T Consensus 73 lV~FwaswCp~C~~e~-P~L~~l~~~--~----g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD-PVLKQLAQQ--Y----GFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHH-HHHHHHHHH--c----CCEEEEEE
Confidence 7789999999999995 445555554 2 46777765
No 71
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=46.97 E-value=47 Score=25.80 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
...++.|..||-.-||.|+.+. ..|....+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~-p~l~~l~~ 47 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMA-PDVAKLKQ 47 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhH-HHHHHHHH
Confidence 4567788889999999999884 34444443
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=46.31 E-value=62 Score=22.14 Aligned_cols=35 Identities=20% Similarity=0.600 Sum_probs=21.7
Q ss_pred eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEe
Q 028973 42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82 (201)
Q Consensus 42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP 82 (201)
|+|.+ +.+-||.|.+.. .-+..+... . + ++++.+-
T Consensus 1 m~I~v-~~~~C~~C~~~~-~~~~~~~~~--~-~-i~~ei~~ 35 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELV-QLLKEAAEE--L-G-IEVEIID 35 (76)
T ss_dssp EEEEE-ECSSCTTHHHHH-HHHHHHHHH--T-T-EEEEEEE
T ss_pred CEEEE-eCCCCCCcHHHH-HHHHHHHHh--c-C-CeEEEEE
Confidence 57788 566699999763 344445554 3 3 6665544
No 73
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=45.43 E-value=15 Score=32.03 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=28.4
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (201)
.+--+-.||+|.||+|..| .|+++. +.+.-.|.++|+-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~-----aPil~~--fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL-----AQVIND--FRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHH-----HHHHHH--HHHHhCCeEEEEe
Confidence 4467889999999999977 355554 5566677888874
No 74
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.20 E-value=31 Score=27.12 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.4
Q ss_pred EecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeeccee
Q 028973 49 ESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKI 88 (201)
Q Consensus 49 ESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~ 88 (201)
+|=||||++. .-.+..+++. ...-++|--+.-|+-..
T Consensus 42 qSWCPdCV~A-EPvi~~alk~--ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 42 QSWCPDCVAA-EPVINEALKH--APEDVHFVHVYVGNRPY 78 (128)
T ss_pred CcCCchHHHh-hHHHHHHHHh--CCCceEEEEEEecCCCc
Confidence 4559999998 3556667765 77777777777786543
No 75
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=45.12 E-value=16 Score=32.03 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG 84 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G 84 (201)
..+--+-+||++.||+|+.| .|++.. +.+.-.|.++|+-
T Consensus 149 a~~~gL~fFy~~~C~~C~~~-----apil~~--fa~~ygi~v~~VS 187 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKM-----APVIQA--FAKEYGISVIPIS 187 (256)
T ss_pred HhceeEEEEECCCCchhHHH-----HHHHHH--HHHHhCCeEEEEe
Confidence 34578899999999999976 355544 5555667788774
No 76
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=44.95 E-value=44 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
..+..|..||.+-||.|+++. ..+..+.+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~-~~~~~~~~ 45 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLA-PEYEKLAA 45 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhC-hHHHHHHH
Confidence 345678889999999999983 34444443
No 77
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=44.88 E-value=72 Score=24.67 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
..|+.+-.|+-+-||.|++.+ ..|....+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~-~~l~~~~~~ 89 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEM-PYMNELYPK 89 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHH-HHHHHHHHH
Confidence 457788888999999999884 567666654
No 78
>PRK10329 glutaredoxin-like protein; Provisional
Probab=43.98 E-value=25 Score=24.83 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=16.5
Q ss_pred EEEEEEEecChhhHHHHHHhH
Q 028973 43 KLGLYYESLCPYSANFIINYL 63 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi~~qL 63 (201)
+|++|.-.-||+|.+- ++.|
T Consensus 2 ~v~lYt~~~Cp~C~~a-k~~L 21 (81)
T PRK10329 2 RITIYTRNDCVQCHAT-KRAM 21 (81)
T ss_pred EEEEEeCCCCHhHHHH-HHHH
Confidence 6899999999999985 4444
No 79
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=43.92 E-value=54 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=19.6
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHH
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIF 67 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~ 67 (201)
.+.-|-.||..-||.|+.+. ..+..+.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~-~~l~~~~ 40 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIA-PILEELA 40 (101)
T ss_pred CCcEEEEEECCCCHHHHHhC-HHHHHHH
Confidence 45678888899999999984 3444333
No 80
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=43.33 E-value=77 Score=22.35 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=20.0
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
.++-+..||-.-||.|+.+. ..+..+.+
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~-p~~~~~a~ 45 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLA-PTWREFAK 45 (101)
T ss_pred CCeEEEEEECCCChHHHHhH-HHHHHHHH
Confidence 47788899999999999773 33433333
No 81
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=43.24 E-value=59 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
...++.+..||..-||.|+++. ..+..+.+
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~-~~~~~la~ 48 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAME-ASYEELAE 48 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 3457888999999999999883 33444443
No 82
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=42.92 E-value=44 Score=31.51 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=30.2
Q ss_pred HHHHHhhhccCCCCCCCCC---CCCCCCceEEEEEEEecChhhHHH
Q 028973 16 FYITLFCFLSGSVSASRTS---PSDVNSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~---~~~~~~kV~V~vyyESlCPd~~~F 58 (201)
|..+|.-...+-+..++.+ ...-+.+++|++|+...||+|..-
T Consensus 90 ~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~ 135 (515)
T TIGR03140 90 LVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDV 135 (515)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHH
Confidence 3455555555555555554 234468999999999999999975
No 83
>PTZ00051 thioredoxin; Provisional
Probab=42.42 E-value=74 Score=22.09 Aligned_cols=29 Identities=7% Similarity=0.216 Sum_probs=21.4
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
..++-|-.||.+-||.|+.+. ..|....+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~-~~l~~l~~ 45 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIA-PFYEECSK 45 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 356788889999999999994 44544443
No 84
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=42.19 E-value=62 Score=22.44 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=21.4
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
+..++-|..||-+-||.|+.+. ..|..+.+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~-~~~~~~~~ 39 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELL-PLLERLAE 39 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHH-HHHHHHHH
Confidence 3467788899999999999883 33444443
No 85
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=41.07 E-value=39 Score=25.76 Aligned_cols=35 Identities=6% Similarity=-0.083 Sum_probs=20.3
Q ss_pred CCceEEEEEEEe--cChhhHHHHHHhHHHHHhhccCCcce
Q 028973 39 NSKVKLGLYYES--LCPYSANFIINYLVKIFEDVDLLSIV 76 (201)
Q Consensus 39 ~~kV~V~vyyES--lCPd~~~Fi~~qL~P~~~~~~l~~~i 76 (201)
...+.|..||.. .||+|+.+ ...++-+.+ +..+.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i--~P~leela~-e~~~~v 62 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDV--AVVLPELLK-AFPGRF 62 (111)
T ss_pred CCCCEEEEecCCcccCcchhhh--HhHHHHHHH-HCCCcE
Confidence 334556666666 79999977 344444433 344443
No 86
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=40.54 E-value=25 Score=28.08 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.8
Q ss_pred ceeeEEEECCEEeccc
Q 028973 184 QYVPWVVVDGQPLYEV 199 (201)
Q Consensus 184 ~~vP~I~ING~~~~d~ 199 (201)
..||-|+|||++++.+
T Consensus 59 ~tvPqVFI~G~~IGG~ 74 (147)
T cd03031 59 VSLPRVFVDGRYLGGA 74 (147)
T ss_pred CCCCEEEECCEEEecH
Confidence 5799999999999753
No 87
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.59 E-value=49 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.1
Q ss_pred EEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee
Q 028973 44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~ 83 (201)
|++|+...||.|--. ...|...... +. ++|++.||
T Consensus 1 i~~~~D~~cP~cy~~-~~~l~~~~~~--~~--~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLA-HERLPALAAR--HG--ATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHH-HHHHHHHHHH--hC--CeeEEeee
Confidence 579999999999877 3455554443 32 77888888
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=39.30 E-value=58 Score=24.41 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
..|+-|-.|+-+-||.|+..+ ..|...+++
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~-p~l~~l~~~ 45 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFT-PKLVEFYEK 45 (132)
T ss_pred CCCEEEEEEECCCCchHHHHH-HHHHHHHHH
Confidence 568888889999999999985 445555554
No 89
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.09 E-value=18 Score=26.21 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=15.5
Q ss_pred EEEEEecChhhHHHHHHhHH
Q 028973 45 GLYYESLCPYSANFIINYLV 64 (201)
Q Consensus 45 ~vyyESlCPd~~~Fi~~qL~ 64 (201)
.+|+.-+||||..|+ +.|-
T Consensus 5 ~lfgsn~Cpdca~a~-eyl~ 23 (85)
T COG4545 5 KLFGSNLCPDCAPAV-EYLE 23 (85)
T ss_pred eeeccccCcchHHHH-HHHH
Confidence 689999999999994 4444
No 90
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=38.93 E-value=25 Score=23.74 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=13.2
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|+||.-.-||+|++-
T Consensus 1 v~ly~~~~Cp~C~~a 15 (72)
T TIGR02194 1 ITVYSKNNCVQCKMT 15 (72)
T ss_pred CEEEeCCCCHHHHHH
Confidence 578999999999987
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=38.69 E-value=57 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.615 Sum_probs=19.2
Q ss_pred CCCCceEEEEEEEecChhhHHH
Q 028973 37 DVNSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 37 ~~~~kV~V~vyyESlCPd~~~F 58 (201)
....+|.|.+|+-.-||+|...
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHH
Confidence 4478899999999999999965
No 92
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=37.94 E-value=66 Score=25.23 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=28.8
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~ 83 (201)
..++.|-.|+-+-||.|++-+ ..|....++ +.+ -+++++-+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~~--~~~-~~v~~v~i 64 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAKE--YGA-KGVAVVAI 64 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHH--Hhh-CCeEEEEE
Confidence 668899999999999998874 567776665 442 23444444
No 93
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=37.51 E-value=72 Score=23.64 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=22.1
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
..|+.|-.++-+-||.|++.+ ..|...+++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~-p~l~~~~~~ 46 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFT-PKLVEFYEK 46 (131)
T ss_pred CCcEEEEEEECCCChHHHHHh-HHHHHHHHH
Confidence 457778888889999999874 445555544
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=36.49 E-value=56 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.2
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
.+..+-.||.+-||.|+.+. ..+....+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~-~~~~~~~~ 44 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMK-PEFTKAAT 44 (104)
T ss_pred CCCEEEEEECCCCHHHHHhC-HHHHHHHH
Confidence 34678889999999999994 34544444
No 95
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=36.16 E-value=73 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.2
Q ss_pred CceEEEEE-EEecChhhHHH
Q 028973 40 SKVKLGLY-YESLCPYSANF 58 (201)
Q Consensus 40 ~kV~V~vy-yESlCPd~~~F 58 (201)
.++.|.|+ +-.-||.|+.+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~ 40 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVT 40 (113)
T ss_pred CCeEEEEEeCCCCCCChHHH
Confidence 45667666 56799999976
No 96
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.16 E-value=75 Score=26.02 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=27.0
Q ss_pred EEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee
Q 028973 43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~ 83 (201)
+|++|+.-.||.|--- .++|...... .-++|++.||
T Consensus 2 ~Id~~~D~vcPwcylg-~~~l~~~~~~----~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLA-FEVLCRYQTA----WNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHH-HHHHHHHHHH----hCCeEEEEee
Confidence 5789999999999755 4556555543 3478899998
No 97
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=35.74 E-value=1.2e+02 Score=21.66 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
..++-|-.||-+-||.|+.+. ..+.+..+.
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~-p~l~~~~~~ 45 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVV-SLFKKIKNE 45 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHh-HHHHHHHHH
Confidence 466788899999999999884 345444443
No 98
>PRK10996 thioredoxin 2; Provisional
Probab=35.10 E-value=83 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
..++.|..||-.-||.|+.+. ..+....+.
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~-~~l~~l~~~ 80 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFA-PIFEDVAAE 80 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHH-HHHHHHHHH
Confidence 367788999999999999984 445555543
No 99
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=33.25 E-value=1e+02 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.8
Q ss_pred CCCceEEEEEEEecChhhHHH
Q 028973 38 VNSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~F 58 (201)
...++.|..||-.-|++|+.+
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l 47 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAA 47 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHH
Confidence 567889999999999999987
No 100
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=32.05 E-value=1.1e+02 Score=21.97 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
...++-|..||-+-||.|+++. ..|-...+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~-p~l~~la~ 45 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFR-PHFNALSS 45 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHh-HHHHHHHH
Confidence 4578899999999999999884 33444333
No 101
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=36 Score=25.64 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=25.2
Q ss_pred EEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973 43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (201)
+|.+|.-|.||+|.+. ++.|. .+.- -...++|.-.|-|.
T Consensus 15 ~VVifSKs~C~~c~~~-k~ll~-~~~v--~~~vvELD~~~~g~ 53 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRA-KELLS-DLGV--NPKVVELDEDEDGS 53 (104)
T ss_pred CEEEEECCcCchHHHH-HHHHH-hCCC--CCEEEEccCCCCcH
Confidence 5889999999999994 55443 3332 33456666555553
No 102
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=31.57 E-value=1.5e+02 Score=20.17 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
..|..|-.|+-+-||.|++++ ..|....++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~-~~l~~~~~~ 47 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEM-PELEALAKE 47 (116)
T ss_pred CCCEEEEEeecccChhHHHHh-HHHHHHHHH
Confidence 367888889999999999884 455555543
No 103
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=31.56 E-value=50 Score=24.41 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=17.0
Q ss_pred ceEEEEEEEecChhhHHHH
Q 028973 41 KVKLGLYYESLCPYSANFI 59 (201)
Q Consensus 41 kV~V~vyyESlCPd~~~Fi 59 (201)
|+.+..|+.+-||.|+++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred CcEEEEEeCCCCHHHHHHH
Confidence 7788889999999999985
No 104
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=31.32 E-value=56 Score=24.06 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=20.6
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHH
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIF 67 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~ 67 (201)
..++.|-.|+-+-||.|++.+ ..|....
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~-~~l~~l~ 51 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEH-PVLMALA 51 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHH-HHHHHHH
Confidence 356778888899999999875 3444433
No 105
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=31.01 E-value=33 Score=23.04 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=14.2
Q ss_pred EEEEEEEecChhhHHHH
Q 028973 43 KLGLYYESLCPYSANFI 59 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi 59 (201)
++++|+-..||.|++-.
T Consensus 1 ~i~Ly~~~~~p~c~kv~ 17 (77)
T cd03040 1 KITLYQYKTCPFCCKVR 17 (77)
T ss_pred CEEEEEcCCCHHHHHHH
Confidence 47889999999999873
No 106
>PTZ00062 glutaredoxin; Provisional
Probab=30.50 E-value=46 Score=28.00 Aligned_cols=27 Identities=7% Similarity=-0.097 Sum_probs=18.8
Q ss_pred ceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 41 KVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 41 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
.+.|-.+..+-||+|+.. +.+++.+..
T Consensus 18 g~~vl~f~a~w~~~C~~m--~~vl~~l~~ 44 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQL--MDVCNALVE 44 (204)
T ss_pred CcEEEEEeCCCCcchHHH--HHHHHHHHH
Confidence 445666667889999954 566666654
No 107
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=29.95 E-value=93 Score=24.01 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=18.7
Q ss_pred ecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973 50 SLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (201)
Q Consensus 50 SlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (201)
|=||||++- .-.+.-++.. ..+-..|-.+..|.
T Consensus 36 sWCPDC~~a-ep~v~~~f~~--~~~~~~lv~v~VG~ 68 (119)
T PF06110_consen 36 SWCPDCVAA-EPVVEKAFKK--APENARLVYVEVGD 68 (119)
T ss_dssp BSSHHHHHH-HHHHHHHHHH---STTEEEEEEE---
T ss_pred cccHHHHHH-HHHHHHHHHh--CCCCceEEEEEcCC
Confidence 459999988 4556666665 55544444455553
No 108
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=29.10 E-value=1.4e+02 Score=20.43 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=16.9
Q ss_pred EEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 43 KLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
+|++|. +-||.|... ...+..+.+.
T Consensus 2 ~i~~~a-~~C~~C~~~-~~~~~~~~~e 26 (76)
T TIGR00412 2 KIQIYG-TGCANCQMT-EKNVKKAVEE 26 (76)
T ss_pred EEEEEC-CCCcCHHHH-HHHHHHHHHH
Confidence 467776 999999987 3444444443
No 109
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=28.60 E-value=53 Score=21.09 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.3
Q ss_pred CceeeEEEECCEEec
Q 028973 183 HQYVPWVVVDGQPLY 197 (201)
Q Consensus 183 ~~~vP~I~ING~~~~ 197 (201)
-..+.+|+|||+.+-
T Consensus 17 ~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVV 31 (48)
T ss_dssp -BSEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEE
Confidence 378999999999873
No 110
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=27.60 E-value=85 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCCceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
.-..|+-+--|+-|-||.|++++ -.|..++++
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~-P~L~~ly~~ 53 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFA-PKLKDFFVR 53 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHH-HHHHHHHHH
Confidence 34568888899999999999996 345555543
No 111
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=27.38 E-value=90 Score=20.37 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=15.8
Q ss_pred ceEEEEEEEecChhhHHH
Q 028973 41 KVKLGLYYESLCPYSANF 58 (201)
Q Consensus 41 kV~V~vyyESlCPd~~~F 58 (201)
+.-+-+||..-||.|+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~ 28 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAI 28 (93)
T ss_pred CcEEEEEECCCChhHHHh
Confidence 667888899999999987
No 112
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=27.19 E-value=1.6e+02 Score=20.92 Aligned_cols=20 Identities=15% Similarity=0.512 Sum_probs=17.1
Q ss_pred CceEEEEEEEecChhhHHHH
Q 028973 40 SKVKLGLYYESLCPYSANFI 59 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi 59 (201)
.|+.|-.|+-+-||.|+..+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~ 40 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLL 40 (114)
T ss_pred CCeEEEEEECCCCcchHhHh
Confidence 67778889999999999875
No 113
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=27.10 E-value=97 Score=22.28 Aligned_cols=30 Identities=13% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCceEEEEEEEe-cChhhHHHHHHhHHHHHhh
Q 028973 39 NSKVKLGLYYES-LCPYSANFIINYLVKIFED 69 (201)
Q Consensus 39 ~~kV~V~vyyES-lCPd~~~Fi~~qL~P~~~~ 69 (201)
..|..|-.++.+ .||.|++-+ .+|.-.+++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l-~~l~~~~~~ 54 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL-PELNELYKK 54 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH-HHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccch-hHHHHHhhh
Confidence 457777777887 999999885 446555543
No 114
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=26.70 E-value=3.3e+02 Score=21.62 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.8
Q ss_pred CCceEEEEEEEecChhhHHH
Q 028973 39 NSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~F 58 (201)
..++-|..||-+-||.|+.+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l 65 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNF 65 (152)
T ss_pred CCCEEEEEEECCCCHHHHHH
Confidence 34677888999999999977
No 115
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.33 E-value=40 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCCC
Q 028973 11 ALSLVFYITLFCFLSGSVSASRT 33 (201)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (201)
.+-|..+++++.+.|+-|++-|.
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 45555667777788887777544
No 116
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=26.18 E-value=61 Score=23.27 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.9
Q ss_pred CceEEEEEEEecChhhHHHH
Q 028973 40 SKVKLGLYYESLCPYSANFI 59 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi 59 (201)
.+..+..||-.-||+|+++.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred CCEEEEEEECCCCHHHHhhH
Confidence 45678899999999999884
No 117
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=26.12 E-value=1.6e+02 Score=20.14 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=20.4
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
.+.-|..||-+-|+.|+++. ..|.....
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~-~~l~~l~~ 41 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMN-QVFEELAK 41 (97)
T ss_pred CCEEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 67788888999999999873 34444333
No 118
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=26.04 E-value=1.2e+02 Score=22.09 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=22.3
Q ss_pred CCCCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
....++-|..||-.-||.|+.+. ..+..+.+
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~-p~~~~l~~ 51 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIE-PVWKEVIQ 51 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhh-HHHHHHHH
Confidence 34578889999999999999873 33444443
No 119
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=25.69 E-value=1.5e+02 Score=22.56 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=17.6
Q ss_pred CCCceEEEEEEEecChhhHHH
Q 028973 38 VNSKVKLGLYYESLCPYSANF 58 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~F 58 (201)
...++.|.-|+-+-||.|+.+
T Consensus 12 ~~~~~vVV~F~A~WCgpCk~m 32 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCMQM 32 (114)
T ss_pred cCCCEEEEEEECCCChhHHHH
Confidence 356778888999999999965
No 120
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=25.68 E-value=59 Score=23.10 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=17.4
Q ss_pred CCceEEEEEEEecChhhHHHH
Q 028973 39 NSKVKLGLYYESLCPYSANFI 59 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi 59 (201)
..++-+..|+-.-||.|+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~ 30 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNE 30 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHH
Confidence 346777788899999999985
No 121
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=25.32 E-value=51 Score=23.20 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEecc
Q 028973 144 TCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198 (201)
Q Consensus 144 ~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~d 198 (201)
.-.+..|++++.+. ... .....| ...||++.+||+.+.|
T Consensus 25 ~~L~elglpye~~~--~~~-------------~~~~~P-~GkVP~L~~dg~vI~e 63 (74)
T cd03079 25 TFLKMCNLPFNVRC--RAN-------------AEFMSP-SGKVPFIRVGNQIVSE 63 (74)
T ss_pred HHHHHcCCCcEEEe--cCC-------------ccccCC-CCcccEEEECCEEEeC
Confidence 33567788877662 111 012334 4789999999998876
No 122
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=24.97 E-value=83 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=20.7
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFED 69 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 69 (201)
....|-.||.+-||.|++.+ -.|....++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~-P~L~~l~~~ 78 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFA-PVLKRFSQQ 78 (153)
T ss_pred CCCEEEEEECCCChhHHHHH-HHHHHHHHH
Confidence 45569999999999999984 334444443
No 123
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=24.80 E-value=2.5e+02 Score=20.63 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.4
Q ss_pred CceEEEEEEEecChhhHHHH
Q 028973 40 SKVKLGLYYESLCPYSANFI 59 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi 59 (201)
.+..|-.||.+-||.|+.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~ 38 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFA 38 (114)
T ss_pred CCeEEEEEECCCCHHHHHHh
Confidence 47888899999999999984
No 124
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=24.30 E-value=53 Score=24.57 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=14.2
Q ss_pred EEEEEEecChhhHHHH
Q 028973 44 LGLYYESLCPYSANFI 59 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi 59 (201)
|++|+-.-||.|++-.
T Consensus 1 i~iY~~~~C~~c~ka~ 16 (117)
T TIGR01617 1 IKVYGSPNCTTCKKAR 16 (117)
T ss_pred CEEEeCCCCHHHHHHH
Confidence 5799999999999884
No 125
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.95 E-value=1.8e+02 Score=21.53 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCceEEEEEEEecChh-hHHHHHHhHHHHHhhccCCc
Q 028973 39 NSKVKLGLYYESLCPY-SANFIINYLVKIFEDVDLLS 74 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd-~~~Fi~~qL~P~~~~~~l~~ 74 (201)
..|+.|-.|+-+-||. |++-+ ..|...+.. +.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l-~~l~~~~~~--~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTL-ANLAQALKQ--LGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHH-HHHHHHHHH--hhH
Confidence 4688889999999998 99885 456666665 544
No 126
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=23.83 E-value=1.6e+02 Score=21.98 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCCCCceEEEEEEEe-cChhhHHHHHHhHHHH
Q 028973 36 SDVNSKVKLGLYYES-LCPYSANFIINYLVKI 66 (201)
Q Consensus 36 ~~~~~kV~V~vyyES-lCPd~~~Fi~~qL~P~ 66 (201)
+.-..|+.|-.++-+ -||.|+.-+- .|..+
T Consensus 24 ~~~~gk~~vv~f~~~~~Cp~C~~~~p-~l~~l 54 (146)
T PF08534_consen 24 SDFKGKPVVVNFWASAWCPPCRKELP-YLNEL 54 (146)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHH-HHHHH
T ss_pred HHhCCCeEEEEEEccCCCCcchhhhh-hHHhh
Confidence 344567788888888 9999998863 44444
No 127
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=23.80 E-value=57 Score=23.87 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=14.6
Q ss_pred CceeeEEEECCEEeccc
Q 028973 183 HQYVPWVVVDGQPLYEV 199 (201)
Q Consensus 183 ~~~vP~I~ING~~~~d~ 199 (201)
...||-|+|||+++|+.
T Consensus 58 ~~tvPQIFi~~~~iGg~ 74 (92)
T cd03030 58 KPLPPQIFNGDEYCGDY 74 (92)
T ss_pred CCCCCEEEECCEEeeCH
Confidence 46889999999999864
No 128
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.66 E-value=1.3e+02 Score=28.66 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHhhhccCCCCCCCCC---CCCCCCceEEEEEEEecChhhHHHH
Q 028973 17 YITLFCFLSGSVSASRTS---PSDVNSKVKLGLYYESLCPYSANFI 59 (201)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~---~~~~~~kV~V~vyyESlCPd~~~Fi 59 (201)
..+|.-...+-+..++.+ ...-+.+++|.+|+..-||+|.+-.
T Consensus 450 i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~ 495 (555)
T TIGR03143 450 ILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVV 495 (555)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHH
Confidence 345544444555555544 2334689999999999999999863
No 129
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=23.28 E-value=74 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=18.3
Q ss_pred HHHHhccCCCCCceeeEEEECCEEe
Q 028973 172 YAAETNSLVPPHQYVPWVVVDGQPL 196 (201)
Q Consensus 172 ~~~~T~~l~p~~~~vP~I~ING~~~ 196 (201)
+..-+++.+-+++-+|-|+||++.+
T Consensus 70 yqgv~~Aw~lgi~k~PAVVfD~~~V 94 (114)
T PF07511_consen 70 YQGVVDAWSLGITKYPAVVFDDRYV 94 (114)
T ss_pred HHHHHHHHHhCccccCEEEEcCCeE
Confidence 3333444456799999999999876
No 130
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=23.09 E-value=56 Score=30.43 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.7
Q ss_pred cchhHHHHHHHHHHHhhhccCC
Q 028973 6 YSSTKALSLVFYITLFCFLSGS 27 (201)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (201)
+.++-|++.||+|++.+|+-+|
T Consensus 18 wgsLaav~~f~lis~LifLCsS 39 (428)
T PF15347_consen 18 WGSLAAVTTFLLISFLIFLCSS 39 (428)
T ss_pred ehHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999988887655
No 131
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=22.93 E-value=2e+02 Score=24.43 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=21.9
Q ss_pred CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcc
Q 028973 40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSI 75 (201)
Q Consensus 40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~ 75 (201)
.+.-+..||-+-||.|+++. ..+..+.+. +.+.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~-P~~e~la~~--~~~~ 84 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMA-PAWERLAKA--LKGQ 84 (224)
T ss_pred CCCEEEEEECCCChHHHHHH-HHHHHHHHH--cCCC
Confidence 35668889999999999884 334333333 4444
No 132
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=22.83 E-value=56 Score=24.38 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.6
Q ss_pred ceeeEEEECCEEecc
Q 028973 184 QYVPWVVVDGQPLYE 198 (201)
Q Consensus 184 ~~vP~I~ING~~~~d 198 (201)
-|-|-|+|||+.++|
T Consensus 66 ~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 66 LFYPLVVINDEIVAE 80 (93)
T ss_dssp S-SSEEEETTEEEEE
T ss_pred cccceEEECCEEEec
Confidence 589999999999976
No 133
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=22.54 E-value=43 Score=22.14 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.5
Q ss_pred EEEEEecChhhHHH
Q 028973 45 GLYYESLCPYSANF 58 (201)
Q Consensus 45 ~vyyESlCPd~~~F 58 (201)
++|+-..||+|++-
T Consensus 2 ~Ly~~~~~p~~~rv 15 (71)
T cd03037 2 KLYIYEHCPFCVKA 15 (71)
T ss_pred ceEecCCCcHhHHH
Confidence 57888889999876
No 134
>PHA02125 thioredoxin-like protein
Probab=22.49 E-value=67 Score=21.82 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=13.5
Q ss_pred EEEEEEecChhhHHH
Q 028973 44 LGLYYESLCPYSANF 58 (201)
Q Consensus 44 V~vyyESlCPd~~~F 58 (201)
|.+|+-.-||.|+++
T Consensus 2 iv~f~a~wC~~Ck~~ 16 (75)
T PHA02125 2 IYLFGAEWCANCKMV 16 (75)
T ss_pred EEEEECCCCHhHHHH
Confidence 678999999999976
No 135
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=22.19 E-value=69 Score=29.63 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=15.0
Q ss_pred EEEEEEEecChhhHHH
Q 028973 43 KLGLYYESLCPYSANF 58 (201)
Q Consensus 43 ~V~vyyESlCPd~~~F 58 (201)
+|+||.-+-||+|.+.
T Consensus 3 ~V~vys~~~Cp~C~~a 18 (410)
T PRK12759 3 EVRIYTKTNCPFCDLA 18 (410)
T ss_pred cEEEEeCCCCHHHHHH
Confidence 6899999999999987
No 136
>smart00594 UAS UAS domain.
Probab=21.82 E-value=47 Score=24.97 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973 38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN 85 (201)
Q Consensus 38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~ 85 (201)
...|..+...+-.-|++|+.|.++.| .++++.++++=++|.|+.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl----~~~~V~~~i~~~fv~~~~ 68 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVL----CNEAVKSLIRENFIFWQV 68 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHc----cCHHHHHHHHcCEEEEEe
Confidence 34455555556667999999976533 344566667657787764
No 137
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=21.64 E-value=1.1e+02 Score=21.65 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=21.2
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
..++-+..||-+-||.|+++. ..|..+.+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~-p~l~~l~~ 42 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLE-PVWNEVGA 42 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhC-hHHHHHHH
Confidence 346778999999999999884 34544443
No 138
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=20.97 E-value=1.8e+02 Score=19.99 Aligned_cols=25 Identities=4% Similarity=0.186 Sum_probs=17.9
Q ss_pred EEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 43 KLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 43 ~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
.+..||-+-||.|+++. ..+..+.+
T Consensus 19 ~lv~f~a~wC~~C~~~~-p~~~~~~~ 43 (102)
T cd03005 19 HFVKFFAPWCGHCKRLA-PTWEQLAK 43 (102)
T ss_pred EEEEEECCCCHHHHHhC-HHHHHHHH
Confidence 67778899999999984 33444434
No 139
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=20.95 E-value=1.8e+02 Score=23.90 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=16.9
Q ss_pred CCceEEEEEEE---ecChhhHHH
Q 028973 39 NSKVKLGLYYE---SLCPYSANF 58 (201)
Q Consensus 39 ~~kV~V~vyyE---SlCPd~~~F 58 (201)
...+.|.+|+. +-||.|+..
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~ 40 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKET 40 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHH
Confidence 46778999999 899999975
No 140
>PRK13675 GTP cyclohydrolase; Provisional
Probab=20.35 E-value=1.5e+02 Score=26.58 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=19.2
Q ss_pred CCceEEEEEEEecChhhHHHHHH
Q 028973 39 NSKVKLGLYYESLCPYSANFIIN 61 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~ 61 (201)
...+.|+|.|.|+||=++.....
T Consensus 144 ~~~l~v~V~~~T~CPCS~~is~~ 166 (308)
T PRK13675 144 RKEIGAEVVGMTACPCAQEMMKE 166 (308)
T ss_pred EEEEEEEEEEEEcChhhHHHHHH
Confidence 45799999999999998887543
No 141
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=20.28 E-value=58 Score=23.66 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=14.0
Q ss_pred EEEEEEecChhhHHHH
Q 028973 44 LGLYYESLCPYSANFI 59 (201)
Q Consensus 44 V~vyyESlCPd~~~Fi 59 (201)
|+||+-..||.|++-.
T Consensus 1 i~iY~~~~C~~c~ka~ 16 (105)
T cd02977 1 ITIYGNPNCSTSRKAL 16 (105)
T ss_pred CEEEECCCCHHHHHHH
Confidence 5799999999999873
No 142
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=20.24 E-value=2.2e+02 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
..|+.|-.|+-+-||.|++.+ ..+....+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~l-p~l~~~~~ 101 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLF-PIIKSIAR 101 (189)
T ss_pred CCCEEEEEEECCCChhHHHHH-HHHHHHHH
Confidence 457778889999999999884 34555444
No 143
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=20.08 E-value=97 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=20.8
Q ss_pred CCceEEEEEEEecChhhHHHHHHhHHHHHh
Q 028973 39 NSKVKLGLYYESLCPYSANFIINYLVKIFE 68 (201)
Q Consensus 39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~ 68 (201)
..++-|-.||.+-||.|+.+. -.|..+.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~-P~L~~la~ 193 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQA-PILQAFED 193 (271)
T ss_pred cCCeEEEEEECCCCccHHHHh-HHHHHHHH
Confidence 357788899999999999873 33433333
Done!