Citrus Sinensis ID: 028975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHcccccEEEEccccHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
malqihspssfttkpyhplqskpkpksnlTLTLIKsqntpintepieesasapakkpkptspgqgfgsstlssssstsgkpsvadgskkkkqpkgrrerasvvrrnpveklsvMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALaasgflpeELDKLFVKYlyptftptvgLFFAGTVAYGVLKYLQnekvkeqk
Flexible Loop (DISEMBL)
malqihspssfttkpyhplqskpkpksnLTLTLIKSQNTPINTEPieesasapakkpkptspgqgfgsstlssssstsgkpsvadgskkkkqpkgrrerasvvrrnpveklsvmskedeAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK
Low Complexity Region (SEG)
MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEEsasapakkpkptspGQGFGsstlssssstsGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVmskedeakakemmknesaFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK
Disordered region (IsUnstruct)
**********************************************************************************************************************************AFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQ********
Disordered Region (DISOPRED)
********SS***KPY*******************************************************************************************************************FLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKY**********
Disordered Region (DISEMBL)
*************************KSNLTLTLIKSQNTPINTEPI********************************************************VRRNPVEKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK
Disordered Region (DISPRO)
MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNT**************************************************************VV**NPVEKLSVMSK*DEA**K**MKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNE******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
255539719	189	conserved hypothetical protein [Ricinus	0.920	0.978	0.614	1e-48
449460802	193	PREDICTED: uncharacterized protein LOC10	0.925	0.963	0.560	1e-45
225455677	175	PREDICTED: uncharacterized protein LOC10	0.870	1.0	0.522	2e-45
224134514	184	predicted protein [Populus trichocarpa]	0.721	0.788	0.64	8e-45
79330574	185	low psii accumulation2 protein [Arabidop	0.920	1.0	0.507	2e-41
297792467	184	hypothetical protein ARALYDRAFT_495227 [	0.915	1.0	0.527	2e-41
359807564	173	uncharacterized protein LOC100777895 [Gl	0.706	0.820	0.568	1e-36
9758196	860	unnamed protein product [Arabidopsis tha	0.542	0.126	0.669	3e-34
110738467	169	hypothetical protein [Arabidopsis thalia	0.537	0.639	0.675	1e-33
388498890	168	unknown [Lotus japonicus]	0.626	0.75	0.572	2e-33

>gi|255539719|ref|XP_002510924.1| conserved hypothetical protein [Ricinus communis] gi|223550039|gb|EEF51526.1| conserved hypothetical protein [Ricinus communis]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/205 (61%), Positives = 150/205 (73%), Gaps = 20/205 (9%)

Query: 1   MALQIHSPSSFTTK---PYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKP 57
           MALQIHS S         YH L    KPKS LT   I+SQ      +P  ++++AP K  
Sbjct: 1   MALQIHSTSFLANNKSFQYHHLLYS-KPKSKLT---IQSQ------KPTPDNSTAPKK-- 48

Query: 58  KPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKE 117
            PT PG GFGSS+ SSSSS+  K S  D S KKK  KG+RERAS++RR+PVE+ + +S+E
Sbjct: 49  -PTPPGLGFGSSSPSSSSSS--KASGTDVSNKKKH-KGKRERASIIRRSPVERPAFVSQE 104

Query: 118 -DEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTV 176
            DEAKAKE  +NESAFLLAWLG+GGIIL QGI L+ASGFLP+E DK FVKYLYP+FTPTV
Sbjct: 105 IDEAKAKEQGRNESAFLLAWLGLGGIILVQGIILSASGFLPDEWDKYFVKYLYPSFTPTV 164

Query: 177 GLFFAGTVAYGVLKYLQNEKVKEQK 201
            LF AGTV YGVLKYLQNE++K+QK
Sbjct: 165 FLFVAGTVTYGVLKYLQNEELKDQK 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460802|ref|XP_004148133.1| PREDICTED: uncharacterized protein LOC101209962 [Cucumis sativus] gi|449531185|ref|XP_004172568.1| PREDICTED: uncharacterized LOC101209962 [Cucumis sativus]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 139/207 (67%), Gaps = 21/207 (10%)

Query: 1   MALQI--HSPSSFTTKPYH----PLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPA 54
           MALQI  HSPSSFT +PYH     L    KPK      +IKSQN   + +PI +      
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPK-----FIIKSQNPSESDKPISKVVD--- 52

Query: 55  KKPKPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVM 114
             P  TS  QGFGSS+  S+S++          K  KQ KG+R+RAS++RR+PVEK   +
Sbjct: 53  DAPIATSSPQGFGSSSPQSTSTSKST------PKSLKQ-KGKRQRASIIRRSPVEKPVFV 105

Query: 115 SKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTP 174
            + DE  AKE  +NES FLL WLG+G +IL QGI LAASGFLPEE DK FVKYLYP+FTP
Sbjct: 106 GQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTP 165

Query: 175 TVGLFFAGTVAYGVLKYLQNEKVKEQK 201
           TV LF AGTVAYGVLKYLQNEK+K++K
Sbjct: 166 TVSLFVAGTVAYGVLKYLQNEKIKDEK 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455677|ref|XP_002264722.1| PREDICTED: uncharacterized protein LOC100261162 [Vitis vinifera] gi|296084154|emb|CBI24542.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 134/201 (66%), Gaps = 26/201 (12%)

Query: 1   MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPT 60
           MA+ I  P +    P     +KP+ +       IK Q++   +EP + S SA     +PT
Sbjct: 1   MAVLIQKPHALLHTPILITPTKPRLR-------IKCQDS---SEPQKPSTSA-----QPT 45

Query: 61  SPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEA 120
           SPGQGFGS++           S    +  KK+ KGRRERAS++RR+PV+K   +  E++ 
Sbjct: 46  SPGQGFGSAS-----------STVKTAVNKKKEKGRRERASIIRRSPVQKPEFLGVEEQG 94

Query: 121 KAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF 180
           ++KE  +NESAFLLAWLG+GGIIL +GI LAASGFLPEE DK FVKYLYP+FTPTV LF 
Sbjct: 95  ESKEQGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLFV 154

Query: 181 AGTVAYGVLKYLQNEKVKEQK 201
           AGTVAYGVLKYLQNE++K  K
Sbjct: 155 AGTVAYGVLKYLQNEEIKTPK 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134514|ref|XP_002321842.1| predicted protein [Populus trichocarpa] gi|222868838|gb|EEF05969.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 117/150 (78%), Gaps = 5/150 (3%)

Query: 53  PAKKPKPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKG-RRERASVVRRNPVEKL 111
           P KKP   SPGQGFGS + ++++++      A GS+ K +PKG RRERAS++RR P EK 
Sbjct: 39  PEKKPSTVSPGQGFGSQSAAAATTSK----TASGSESKNKPKGNRRERASIIRRAPAEKP 94

Query: 112 SVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPT 171
             +S+E+E K KE  +NE+AFLLAWLG+GGIIL +GI LAASGFLPEE DK FVKYLYP+
Sbjct: 95  GFISQENEVKVKEQGRNETAFLLAWLGLGGIILVEGILLAASGFLPEEWDKFFVKYLYPS 154

Query: 172 FTPTVGLFFAGTVAYGVLKYLQNEKVKEQK 201
           FTPTVGLF AGTVAYGV KYLQNE +K+ K
Sbjct: 155 FTPTVGLFVAGTVAYGVSKYLQNENLKDLK 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79330574|ref|NP_001032057.1| low psii accumulation2 protein [Arabidopsis thaliana] gi|332008713|gb|AED96096.1| low psii accumulation2 protein [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 130/201 (64%), Gaps = 16/201 (7%)

Query: 1   MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPT 60
           MALQIHSP SF+T+PYH   +   P+       IK QN+ I ++  E+        P  +
Sbjct: 1   MALQIHSPCSFSTRPYHLFFTTRNPR-----FAIKCQNSQIESDTTED--------PSRS 47

Query: 61  SPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEA 120
                 G    S +SS+S    ++  +   K+ KG+RE   V RR PVEK   MS+E  A
Sbjct: 48  KNSSSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAA 104

Query: 121 KAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF 180
           KA+E  +NE+AFLL WLG+G +IL +GI LAASGFLPEELDKLFVKY+YP FTP+V LF 
Sbjct: 105 KAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFV 164

Query: 181 AGTVAYGVLKYLQNEKVKEQK 201
           AGT AYGVLKY+QNEK+K Q+
Sbjct: 165 AGTTAYGVLKYIQNEKMKGQE 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792467|ref|XP_002864118.1| hypothetical protein ARALYDRAFT_495227 [Arabidopsis lyrata subsp. lyrata] gi|297309953|gb|EFH40377.1| hypothetical protein ARALYDRAFT_495227 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 131/201 (65%), Gaps = 17/201 (8%)

Query: 1   MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPT 60
           MALQIHS   F+T+PYH   +   P+       IK QN+ I +E  E+ A     +PK +
Sbjct: 1   MALQIHSSCFFSTRPYHLFITTRNPR-----FAIKCQNSQIESETTEDPA-----QPKNS 50

Query: 61  SPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEA 120
           S          S+SSS + K S A    KK   KG+RE   + RR PVEK   MS+E  A
Sbjct: 51  SASGV--GFGSSASSSPAKKLSAATSGIKKG--KGKRE---LKRRAPVEKPVFMSEEGAA 103

Query: 121 KAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF 180
           KA+E  +NE+AFLL WLG+G +IL +GI LAASGFLPEELDK FVKY+YP FTP+VGLF 
Sbjct: 104 KAEEQRRNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKFFVKYVYPVFTPSVGLFL 163

Query: 181 AGTVAYGVLKYLQNEKVKEQK 201
           AGT AYGVLKY+QNEK+K Q+
Sbjct: 164 AGTTAYGVLKYIQNEKMKGQE 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807564|ref|NP_001241154.1| uncharacterized protein LOC100777895 [Glycine max] gi|255626341|gb|ACU13515.1| unknown [Glycine max] gi|255634813|gb|ACU17767.1| unknown [Glycine max]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 107/153 (69%), Gaps = 11/153 (7%)

Query: 49  SASAPAKKPKPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPV 108
           S  A +    P+  G GFGSS       T+  P        KK+ K +RERAS++RR+P+
Sbjct: 32  SEKASSDDSGPSKTGVGFGSS------DTAAVPV-----SSKKKKKAQRERASIIRRSPL 80

Query: 109 EKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYL 168
           EK + +S++   KAKE  KNESAFLLAWLG G +IL +GIALAASGFLPE+ D+ FVK+L
Sbjct: 81  EKPAFVSEQQVGKAKEENKNESAFLLAWLGFGVVILVEGIALAASGFLPEQWDQFFVKFL 140

Query: 169 YPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK 201
           YP+FTPTV LF AG VAYGV KYLQNEK+ EQK
Sbjct: 141 YPSFTPTVFLFVAGAVAYGVFKYLQNEKITEQK 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758196|dbj|BAB08670.1| unnamed protein product [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 3/112 (2%)

Query: 90  KKQPKGRRERASVVRRNPVEKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIA 149
            K+ KG+RE   V RR PVEK   MS+E  AKA+E  +NE+AFLL WLG+G +IL +GI 
Sbjct: 752 NKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGII 808

Query: 150 LAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK 201
           LAASGFLPEELDKLFVKY+YP FTP+V LF AGT AYGVLKY+QNEK+K Q+
Sbjct: 809 LAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNEKMKGQE 860

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738467|dbj|BAF01159.1| hypothetical protein [Arabidopsis thaliana]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 89/111 (80%), Gaps = 3/111 (2%)

Query: 91  KQPKGRRERASVVRRNPVEKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIAL 150
           K+ KG+RE   V RR PVEK   MS+E  AKA+E  +NE+AFLL WLG+G +IL +GI L
Sbjct: 62  KKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIIL 118

Query: 151 AASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK 201
           AASGFLPEELDKLFVKY+YP FTP+V LF AGT AYGVLKY+QNEK+K Q+
Sbjct: 119 AASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNEKMKGQE 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498890|gb|AFK37511.1| unknown [Lotus japonicus]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 95/131 (72%), Gaps = 5/131 (3%)

Query: 73  SSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVM--SKEDEAKAKEMMKNES 130
           +S S   KP V  G  K+K  KGRR    ++RR+PVEK ++   S++ + +  E  K E+
Sbjct: 41  ASDSAPQKPGVGFGQTKQKD-KGRRR--DIIRRSPVEKPALFDSSEQKQQQTVEQSKTET 97

Query: 131 AFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLK 190
           AFLLAWLG G +IL +GIALAASGFLPEE DK+FVKY+YP+FTPTV  FFAG V YGVLK
Sbjct: 98  AFLLAWLGFGAVILVEGIALAASGFLPEEWDKIFVKYVYPSFTPTVLFFFAGAVVYGVLK 157

Query: 191 YLQNEKVKEQK 201
           YLQN+ + +QK
Sbjct: 158 YLQNDNITQQK 168

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:1009023492	185	LPA2 "low psii accumulation2"	0.920	1.0	0.467	1.5e-35

TAIR|locus:1009023492 LPA2 "low psii accumulation2" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 94/201 (46%), Positives = 111/201 (55%)

Query:     1 MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEEXXXXXXXXXXXX 60
             MALQIHSP SF+T+PYH   +   P+       IK QN+ I ++  E+            
Sbjct:     1 MALQIHSPCSFSTRPYHLFFTTRNPRF-----AIKCQNSQIESDTTEDPSRSKNSSSS-- 53

Query:    61 XXGQGFGXXXXXXXXXXXGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVXXXXXXX 120
               G GFG            K S A    KK   KG+RE   V RR PVEK          
Sbjct:    54 --GVGFGSPASSSSPAK--KLSAATSGNKKG--KGKRE---VNRRAPVEKPVFMSEEGAA 104

Query:   121 XXXXXXXXXXXFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF 180
                        FLL WLG+G +IL +GI LAASGFLPEELDKLFVKY+YP FTP+V LF 
Sbjct:   105 KAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFV 164

Query:   181 AGTVAYGVLKYLQNEKVKEQK 201
             AGT AYGVLKY+QNEK+K Q+
Sbjct:   165 AGTTAYGVLKYIQNEKMKGQE 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.136   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       158   0.00085  106 3  11 22  0.40    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  123 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.55u 0.07s 13.62t   Elapsed:  00:00:11
  Total cpu time:  13.55u 0.07s 13.62t   Elapsed:  00:00:11
  Start:  Fri May 10 01:01:14 2013   End:  Fri May 10 01:01:25 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PF02656	73	DUF202: Domain of unknown function (DUF202); Inter	86.45
PF10177	141	DUF2371: Uncharacterised conserved protein (DUF237	82.7

>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function

Probab=86.45  E-value=0.37  Score=33.22  Aligned_cols=30  Identities=33%  Similarity=0.445  Sum_probs=23.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028975          126 MKNESAFLLAWLGVGGIILFQGIALAASGFL  156 (201)
Q Consensus       126 ~~nE~aFLLa~lglG~vIlveGi~LAASGfL  156 (201)
                      .+|||.|| +|+=.++.+++-|+++.--...
T Consensus         4 lA~ERT~L-aW~Rt~l~l~~~g~~l~~~~~~   33 (73)
T PF02656_consen    4 LANERTFL-AWIRTALALVGVGLALLRFFSL   33 (73)
T ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence            47999976 9999888888888887765444

>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans

Probab=82.70  E-value=1  Score=37.08  Aligned_cols=25  Identities=36%  Similarity=0.639  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCch
Q 028975          134 LAWLGVGGIILFQGIALAASGFLPE  158 (201)
Q Consensus       134 La~lglG~vIlveGi~LAASGfLPe  158 (201)
                      -.|+.||++|++.||++|.-|+.|.
T Consensus        40 g~~l~lG~lvllvGiaMAv~GYwp~   64 (141)
T PF10177_consen   40 GLFLLLGILVLLVGIAMAVLGYWPK   64 (141)
T ss_pred             HHHHHHHHHHHHHhhHhheeecccc
Confidence            4567799999999999999999999

It includes members of the TMEM200 family of transmembrane proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00