BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028976
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V
Sbjct: 24 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDV---- 75
Query: 165 DEQSEVAERLKIKVNFSFVLFL 186
DE EVAE+ ++ +F LF+
Sbjct: 76 DELKEVAEKYNVEAMPTF-LFI 96
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLC-KGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177
+VV+DF+ T CG CK I F K+ +GD+ V F K +V DEQS++A+ + I+
Sbjct: 35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDK---VGFYKVDV----DEQSQIAQEVGIR 87
Query: 178 VNFSFVLF 185
+FV F
Sbjct: 88 AMPTFVFF 95
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG CK I K +Q F
Sbjct: 2 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF----SEQYPQADFY 53
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE +VA++ ++ + +LF
Sbjct: 54 KLDV----DELGDVAQKNEVSAMPTLLLF 78
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG CK I K +Q F
Sbjct: 8 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF----SEQYPQADFY 59
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE +VA++ ++ + +LF
Sbjct: 60 KLDV----DELGDVAQKNEVSAMPTLLLF 84
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
T EF + K+TG LV++DF + CG C+ I F++ K + IFLK +V
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK----KFPGAIFLKVDV- 67
Query: 162 DEYDEQSEVAERLKIKVNFSFVLFLTFNE 190
DE +VAE ++ +F LF+ E
Sbjct: 68 ---DELKDVAEAYNVEAMPTF-LFIKDGE 92
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+K+ E+ +LVVVDF + CG C++I F+ L K + V+FLK + DE
Sbjct: 31 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDT----DELKS 82
Query: 170 VAERLKIKVNFSFVLF 185
VA I+ +F+
Sbjct: 83 VASDWAIQAMPTFMFL 98
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K +F K L ++ LVV+DFY T CG CK I +L + D V+FL
Sbjct: 2 VYQVKDQEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE ++A+ +I +F+
Sbjct: 56 KVDV----DECEDIAQDNQIACMPTFLFM 80
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
E K D + +LE+ K LVVVDF+ T CG CK I F +L ++ IF+K
Sbjct: 8 ELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKV 60
Query: 159 NVIDEYDEQSEVAERLKIKVNFSFV 183
+V D+ E A + I +F+
Sbjct: 61 DV----DKLEETARKYNISAMPTFI 81
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
E K D + +LE+ K LVVVDF+ T CG CK I F +L ++ IF+K
Sbjct: 17 ELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKV 69
Query: 159 NVIDEYDEQSEVAERLKIKVNFSFV 183
+V D+ E A + I +F+
Sbjct: 70 DV----DKLEETARKYNISAMPTFI 90
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179
+V+DFY T CG CK ++ +KL + D V F+K +V DE ++A+ ++
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDV----DESPDIAKECEVTAM 84
Query: 180 FSFVL 184
+FVL
Sbjct: 85 PTFVL 89
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG K I K +Q F
Sbjct: 8 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPSKMIAPMIEKF----SEQYPQADFY 59
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE +VA++ ++ + +LF
Sbjct: 60 KLDV----DELGDVAQKNEVSAMPTLLLF 84
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 111 EKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEV 170
EK K + L+VVDF + C CK I F++L K + V FLK +V DE V
Sbjct: 20 EKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDV----DELKAV 71
Query: 171 AERLKIKVNFSFVLF 185
AE ++ +F+
Sbjct: 72 AEEWNVEAMPTFIFL 86
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
L K KE +VVDF T CG CK I F L S D VIFLK
Sbjct: 17 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK 61
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+K +G LVV+DF+ T CG CK I +L D V+ LK +V DE ++A
Sbjct: 21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV----DECEDIAM 73
Query: 173 RLKIKVNFSFVLF 185
I +FV
Sbjct: 74 EYNISSMPTFVFL 86
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDAQDVASEAEVKA 73
Query: 179 NFSFVLF 185
+F F
Sbjct: 74 TPTFQFF 80
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+K +G LVV+DF+ T CG CK I +L D V+ LK +V DE ++A
Sbjct: 16 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV----DECEDIAM 68
Query: 173 RLKIKVNFSFVLF 185
I +FV
Sbjct: 69 EYNISSMPTFVFL 81
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG CK I+ F L ++ + VIFL
Sbjct: 2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
+ +V D+ +VA + I+ + +LF
Sbjct: 56 EVDV----DDAQDVAPKYGIRGIPTLLLF 80
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG CK I K +Q + F
Sbjct: 9 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKF----AEQYSDAAFY 61
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE S+VA++ ++ + + +
Sbjct: 62 KLDV----DEVSDVAQKAEVSSMPTLIFY 86
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
+E++ LVV+DF + CG C+ + F+ L K + +FLK +V DE
Sbjct: 27 IEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDV----DELKP 78
Query: 170 VAERLKIKVNFSFVLFL 186
+AE+ ++ +F LF+
Sbjct: 79 IAEQFSVEAMPTF-LFM 94
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG CK I K +Q + F
Sbjct: 2 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKF----AEQYSDAAFY 54
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE S+VA++ ++ + + +
Sbjct: 55 KLDV----DEVSDVAQKAEVSSMPTLIFY 79
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG CK I+ F L ++ + VIFL
Sbjct: 2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
+ +V D+ +VA ++K +F F
Sbjct: 56 EVDV----DDCQDVASECEVKCTPTFQFF 80
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 109 ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+L + KE LV+VDF+ T CG C+ + Q + + + D V F+K +V
Sbjct: 15 LLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD----VTFIKVDV 62
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAP-VIF 155
+R T A+ K++ ++K G L+VVDF+ CG C+ I L K E P V F
Sbjct: 1 MRVLATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAK-----EIPEVEF 53
Query: 156 LKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V D+ E A + + +FV
Sbjct: 54 AKVDV----DQNEEAAAKYSVTAMPTFVFI 79
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG CK I+ F L ++ + VIFL
Sbjct: 2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
+ +V D+ +VA ++K +F F
Sbjct: 56 EVDV----DDCQDVASECEVKCMPTFQFF 80
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG CK I+ F L ++ + VIFL
Sbjct: 2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFL 55
Query: 157 KHNVIDEYDEQSE 169
+ +V D D SE
Sbjct: 56 EVDVNDCQDVASE 68
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASEXEVKC 73
Query: 179 NFSFVLF 185
+F F
Sbjct: 74 MPTFQFF 80
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D D SE
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDVDDCQDVASE 68
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D D SE
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDVDDCQDVASE 68
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
L K KE +VV F T CG CK I F L S D VIFLK
Sbjct: 17 LAKGKEEHKPIVVAFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK 61
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CGSCK I +L + D E LK +V
Sbjct: 9 TDADF-----DSKVESGVQLVDFWATWCGSCKMIAPVLEEL---AADYEGKADILKLDV- 59
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE A + ++ + ++F
Sbjct: 60 ---DENPSTAAKYEVMSIPTLIVF 80
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T+CG CK I +L + D E LK +V
Sbjct: 9 TDADF-----DSKVESGVQLVDFWATACGPCKMIAPVLEEL---AADYEGKADILKLDV- 59
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE A + ++ + ++F
Sbjct: 60 ---DENPSTAAKYEVMSIPTLIVF 80
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
LVVVDF T CG K I+ F L + + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPAKMIKPFFHSLSEKYSN----VIFLEVDV----DDAQDVASEAEVKA 73
Query: 179 NFSFVLF 185
+F F
Sbjct: 74 TPTFQFF 80
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CG+CK I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGTCKMIAPVLEEL---AADYEGKADILKLDV- 60
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE A + ++ + ++F
Sbjct: 61 ---DENPSTAAKYEVMSIPTLIVF 81
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V+ + AEF I+ +++ LV+VDF+ CG CK I + + K ++F+
Sbjct: 10 VKIVTSQAEFDSIISQNE----LVIVDFFAEWCGPCKRIAPFYEECSKTY----TKMVFI 61
Query: 157 KHNVIDEYDEQSEVAERLKI 176
K +V DE SEV E+ I
Sbjct: 62 KVDV----DEVSEVTEKENI 77
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA F + ++ K V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANFQQAIQGDKP----VLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV- 57
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE E + I + +LF
Sbjct: 58 ---DENPETTSQFGIMSIPTLILF 78
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CG CK I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGPCKMIAPVLEEL---AADYEGKADILKLDV- 60
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE A + ++ + ++F
Sbjct: 61 ---DENPSTAAKYEVMSIPTLIVF 81
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA F + ++ K V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANFQQAIQGDKP----VLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV- 57
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE E + I + +LF
Sbjct: 58 ---DENPETTSQFGIMSIPTLILF 78
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
LVVVDF T CG K I+ F L ++ + VIFL+ +V D D SE
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLS----EKYSNVIFLEVDVDDSQDVASE 68
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG K I K +Q + F
Sbjct: 10 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPSKMIAPMIEKFA----EQYSDAAFY 62
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE S+VA++ ++ + + +
Sbjct: 63 KLDV----DEVSDVAQKAEVSSMPTLIFY 87
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG K I K + D F
Sbjct: 2 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPSKMIAPMIEKFAEQYSDAA----FY 54
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE S+VA++ ++ + + +
Sbjct: 55 KLDV----DEVSDVAQKAEVSSMPTLIFY 79
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
+E++ LVV+DF + CG + + F+ L K + +FLK +V DE
Sbjct: 30 IEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPN----AVFLKVDV----DELKP 81
Query: 170 VAERLKIKVNFSFVLFL 186
+AE+ ++ +F LF+
Sbjct: 82 IAEQFSVEAMPTF-LFM 97
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
+++V+FY CG CK + + K K + P+ K + EQ+++A+R +
Sbjct: 26 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT----EQTDLAKRFDVSG 81
Query: 179 NFSFVLFLTFNEF 191
+ +F F
Sbjct: 82 YPTLKIFRKGRPF 94
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177
L +VDF+ CG C+ + +L + D + +K NV DE +A R ++
Sbjct: 51 PLTLVDFFAPWCGPCRLVSPILEELAR---DHAGRLKVVKVNV----DEHPGLAARYGVR 103
Query: 178 VNFSFVLF 185
+ VLF
Sbjct: 104 SVPTLVLF 111
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179
VV+D + CG CK + + KL + D VIFLK +D E +A+ L I+V
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLK---LDCNQENKTLAKELGIRVV 80
Query: 180 FSF 182
+F
Sbjct: 81 PTF 83
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG K I+ F L ++ + VIFL
Sbjct: 13 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSL----SEKYSNVIFL 66
Query: 157 KHNVIDEYDEQSE 169
+ +V D D SE
Sbjct: 67 EVDVDDCQDVASE 79
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179
VV+D + CG CK + + KL + D VIFLK +D E +A+ L I+V
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLK---LDCNQENKTLAKELGIRVV 92
Query: 180 FSF 182
+F
Sbjct: 93 PTF 95
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
LVVVDF T CG K I+ F L ++ + VIFL+ +V D D SE
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSL----SEKYSNVIFLEVDVDDCQDVASE 68
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
LVVVDF T CG CK I+ F L ++ + VIFL+
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLE 56
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD 165
+++V+FY CG CK + + K K + P+ K + E D
Sbjct: 147 ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD 195
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
V+++FY CG CK + K+ D++ P+ K
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAK 72
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 109 ILEKSKETGSLVVVDFYRTSCGSCK 133
+++ S +TGS+V +DF+ + CG C+
Sbjct: 20 VVKLSDKTGSVVYLDFWASWCGPCR 44
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CG+ K I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGTSKMIAPVLEEL---AADYEGKADILKLDV- 60
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
DE A + ++ + ++F
Sbjct: 61 ---DENPSTAAKYEVMSIPTLIVF 81
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 86 DEDDDLCPVEC----VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSK 141
D DDD +E V T + + L ++ G +V+ +F CG CK I + +
Sbjct: 11 DADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIE 70
Query: 142 LCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182
L + ++FL VID DE S+ + +IK +F
Sbjct: 71 L----SENYPSLMFL---VID-VDELSDFSASWEIKATPTF 103
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYI 135
TDA F +L +K V+VDF+ T CG CK +
Sbjct: 13 TDASFATDVLSSNKP----VLVDFWATWCGPCKMV 43
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYI 135
TDA F +L +K V+VDF+ T CG CK +
Sbjct: 18 TDASFATDVLSSNKP----VLVDFWATWCGPCKMV 48
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI 154
V V+FY CG CK + + KL + D E VI
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 304
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
V+++FY CG CK + K+ D + P+ K
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAK 74
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-----EQSEVAERL 174
VVVDF+ CG CK + K+ Q V+ K ++ D D E S V L
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMV---AKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 90
Query: 175 KIK 177
+K
Sbjct: 91 AMK 93
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI 154
V V+FY CG CK + + KL + D E VI
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 62
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 102 TDAEFFKIL----EKSKETGSL----VVVDFYRTSCGSCKYIEQGFSKLCK 144
T AEF K + SKE L +VDFY CG CK + +L K
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK 78
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 102 TDAEFFKIL----EKSKETGSL----VVVDFYRTSCGSCKYIEQGFSKLCK 144
T AEF K + SKE L +VDFY CG CK + +L K
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK 78
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK 144
TD F + + KS + V+VDF+ CG C+ I +L K
Sbjct: 7 TDENFEQEVLKSDKP---VLVDFWAPWCGPCRMIAPIIEELAK 46
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
LVVVDF T G K I+ F L ++ + VIFL+ +V D D SE
Sbjct: 22 LVVVDFSATWSGPSKMIKPFFHSL----SEKYSNVIFLEVDVDDCQDVASE 68
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID 162
D E F L + L+V+ F+ + CK ++Q F + + V FL ID
Sbjct: 7 DQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLS---ID 61
Query: 163 EYDEQSEVAERLKIKVNFSFVLF 185
DE SE++E +I F++
Sbjct: 62 A-DENSEISELFEISAVPYFIII 83
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCK 144
V+++FY CG CK +E ++ L K
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGK 52
>pdb|1P8C|A Chain A, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|B Chain B, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|C Chain C, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|D Chain D, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|E Chain E, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|F Chain F, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
Length = 145
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 73 KVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG 130
++ GL+ +T D+ V CV+E +D E F+ L+ + G +V+ R + G
Sbjct: 69 ELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVG 126
>pdb|1VKE|A Chain A, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|B Chain B, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|C Chain C, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|D Chain D, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|E Chain E, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|F Chain F, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
Length = 133
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 68 NLRHGKVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRT 127
+++ ++ GL+ +T D+ V CV+E +D E F+ L+ + G +V+ R
Sbjct: 54 DVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRR 113
Query: 128 SCG 130
+ G
Sbjct: 114 AVG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,620,994
Number of Sequences: 62578
Number of extensions: 222261
Number of successful extensions: 644
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 74
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)