BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028976
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5C5|TRL4_ARATH Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana
GN=At1g07700 PE=2 SV=1
Length = 204
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 100/129 (77%), Gaps = 4/129 (3%)
Query: 69 LRHGKVKGLIDATQGE-SDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRT 127
L+ G K L E SDE+DDLCPVECV EFKTD E +LEKSKET SLVVVDFYRT
Sbjct: 58 LQRGIAKSLSQENLVELSDENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRT 117
Query: 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLT 187
+CGSCKYIEQGFSKLCK SGDQEAPVIFLKHNV+DEYDEQSEVAERL+IK + LF
Sbjct: 118 ACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIK---AVPLFHF 174
Query: 188 FNEFILMAS 196
+ +L+ S
Sbjct: 175 YKNGVLLES 183
>sp|Q6YTI3|TRL4_ORYSJ Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os02g0567100 PE=2 SV=1
Length = 214
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 72/82 (87%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V EFKT+ E ++LE++K TG+LVVVDF+R SCGSCKYIEQGF KLCKGSGD + V+FL
Sbjct: 85 VTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLCKGSGDHGSSVVFL 144
Query: 157 KHNVIDEYDEQSEVAERLKIKV 178
KHNVIDEYDEQSEVA+RL+IKV
Sbjct: 145 KHNVIDEYDEQSEVADRLRIKV 166
>sp|Q8LEK4|TRL21_ARATH Thioredoxin-like 2-1, chloroplastic OS=Arabidopsis thaliana
GN=At4g26160 PE=2 SV=2
Length = 221
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 102 TDAEFFKILEKSKETGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
T AE F L K+ G LV+VDFY T CGSC+ + F KLCK + + ++FLK N
Sbjct: 99 TSAEQF--LNALKDAGDRLVIVDFYGTWCGSCRAM---FPKLCK-TAKEHPNILFLKVN- 151
Query: 161 IDEYDEQSEVAERLKIKV 178
+DE + + L +KV
Sbjct: 152 ---FDENKSLCKSLNVKV 166
>sp|Q851R5|TRH22_ORYSJ Thioredoxin H2-2 OS=Oryza sativa subsp. japonica GN=Os03g0800700
PE=2 SV=1
Length = 134
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
L+V+DF T CG C++IE F + D +F K +V DE SEVA + K++
Sbjct: 46 LIVIDFSATWCGPCRFIEPAFKDMAGRFAD----AVFFKIDV----DELSEVARQWKVEA 97
Query: 179 NFSFVL 184
+FVL
Sbjct: 98 MPTFVL 103
>sp|A2YIW7|TRXH_ORYSI Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1
Length = 122
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V
Sbjct: 16 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDV---- 67
Query: 165 DEQSEVAERLKIKVNFSFVLFL 186
DE EVAE+ ++ +F LF+
Sbjct: 68 DELKEVAEKYNVEAMPTF-LFI 88
>sp|Q0D840|TRXH1_ORYSJ Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1
Length = 122
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V
Sbjct: 16 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDV---- 67
Query: 165 DEQSEVAERLKIKVNFSFVLFL 186
DE EVAE+ ++ +F LF+
Sbjct: 68 DELKEVAEKYNVEAMPTF-LFI 88
>sp|Q6Z4I3|TRH21_ORYSJ Thioredoxin H2-1 OS=Oryza sativa subsp. japonica GN=Os07g0190800
PE=2 SV=1
Length = 138
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE 163
A++ ++ + K T LVV+DF + CG CK +E F ++ D V FLK +V
Sbjct: 30 AKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTD----VAFLKVDV--- 82
Query: 164 YDEQSEVAERLKIKVNFSFVL 184
DE +EVA +++ +FVL
Sbjct: 83 -DELAEVARTWRVEAMPTFVL 102
>sp|Q42403|TRXH3_ARATH Thioredoxin H3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1
Length = 118
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+ + E+ L+V+DF T C C++I F+ L K D V+F K +V DE +
Sbjct: 20 LKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLD----VVFFKVDV----DELNT 71
Query: 170 VAERLKIKVNFSFVLF 185
VAE K++ +F+
Sbjct: 72 VAEEFKVQAMPTFIFM 87
>sp|Q5TKD8|TRL2_ORYSJ Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os05g0200100 PE=2 SV=1
Length = 216
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
EF L + + LV+V+FY T CGSC+ + F +LC+ + + ++FLK N +
Sbjct: 89 EFLDALRDAGD--RLVIVEFYGTWCGSCRAL---FPRLCRTAVENPD-ILFLKVN----F 138
Query: 165 DEQSEVAERLKIKV 178
DE + +RL +KV
Sbjct: 139 DENKPMCKRLNVKV 152
>sp|Q96419|TRXH_FAGES Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1
Length = 116
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
T E+ + +K+K++G L+V+DF + CG C+ I S+L K V F K +V
Sbjct: 12 TVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPH----VAFFKVDV- 66
Query: 162 DEYDEQSEVAERLKIKVNFSFVLF 185
D+ +VAE K++ SFV+
Sbjct: 67 ---DDLKDVAEEYKVEAMPSFVIL 87
>sp|Q5WNE3|NGLY1_CAEBR Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1
Length = 602
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
VRE E +ILEKS ++ L++VDF+ CG C+ I F +L G+ FL
Sbjct: 3 VREVSRLPELNEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGN----ATFL 57
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K N D ++ R I +F+ F
Sbjct: 58 KVNT----DLARDIVMRYSISAMPTFLFF 82
>sp|P22217|TRX1_YEAST Thioredoxin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRX1 PE=1 SV=3
Length = 103
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG CK I K +Q F
Sbjct: 2 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF----SEQYPQADFY 53
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE +VA++ ++ + +LF
Sbjct: 54 KLDV----DELGDVAQKNEVSAMPTLLLF 78
>sp|P29448|TRXH1_ARATH Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1
Length = 114
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+K+ E+ +LVVVDF + CG C++I F+ L K + V+FLK + DE
Sbjct: 21 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDT----DELKS 72
Query: 170 VAERLKIKVNFSFVLF 185
VA I+ +F+
Sbjct: 73 VASDWAIQAMPTFMFL 88
>sp|P68176|TRXH_BRAOL Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1
Length = 123
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+ +KE+ L+V+DF C C++I F +L K D V+F K +V DE +
Sbjct: 26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLD----VVFFKVDV----DELAT 77
Query: 170 VAERLKIKVNFSFV 183
VA+ ++ +FV
Sbjct: 78 VAQEFDVQAMPTFV 91
>sp|P68177|TRXH1_BRANA Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1
Length = 123
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+ +KE+ L+V+DF C C++I F +L K D V+F K +V DE +
Sbjct: 26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLD----VVFFKVDV----DELAT 77
Query: 170 VAERLKIKVNFSFV 183
VA+ ++ +FV
Sbjct: 78 VAQEFDVQAMPTFV 91
>sp|Q8LCT3|TRL22_ARATH Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana
GN=At4g29670 PE=2 SV=2
Length = 236
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
EF L + E LV+V+FY T C SC+ + F KLCK + + ++FLK N +
Sbjct: 113 EFLSALSGAGE--RLVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKVN----F 162
Query: 165 DEQSEVAERLKIKV 178
DE + + L ++V
Sbjct: 163 DENKPMCKSLNVRV 176
>sp|Q9UW02|THIO_COPCM Thioredoxin OS=Coprinus comatus PE=1 SV=1
Length = 106
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 112 KSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA 171
K +G ++++DF+ T CG C+ I F K + G ++F K +V D S+++
Sbjct: 13 KLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANN--IVFAKVDV----DTASDIS 66
Query: 172 ERLKIKVNFSFVLF 185
E KI+ +F ++
Sbjct: 67 EEAKIRAMPTFQVY 80
>sp|O64432|TRXH_BRARA Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1
Length = 123
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+ +KE+ L+V+DF C C++I F +L K D V+F K +V DE +
Sbjct: 26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLD----VVFFKVDV----DELAT 77
Query: 170 VAERLKIKVNFSFV 183
VA+ ++ +FV
Sbjct: 78 VAKEFDVQAMPTFV 91
>sp|O96952|THIO_GEOCY Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1
Length = 106
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 100 FKTDAEFFKILEKSKETGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
KT A+F + L K+ G LVV+DF + CG C+ I + ++ K D VIF K
Sbjct: 5 LKTKADFDQAL---KDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPD----VIFYKV 57
Query: 159 NVIDEYDEQSEVAERLKIKVNFSF 182
+V DE DE +E AE+++ F F
Sbjct: 58 DV-DENDETAE-AEKIQAMPTFKF 79
>sp|P25372|TRX3_YEAST Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TRX3 PE=1 SV=1
Length = 127
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179
+V+DFY T CG CK ++ +KL + D V F+K +V DE ++A+ ++
Sbjct: 46 LVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDV----DESPDIAKECEVTAM 97
Query: 180 FSFVL 184
+FVL
Sbjct: 98 PTFVL 102
>sp|P08629|THIO_CHICK Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2
Length = 105
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
LVVVDF T CG CK I+ F LC GD V+F++ +V D+ +VA +K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLCDKFGD----VVFIEIDV----DDAQDVATHCDVKC 73
Query: 179 NFSFVLF 185
+F +
Sbjct: 74 MPTFQFY 80
>sp|Q6XHI1|THIO2_DROYA Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1
Length = 106
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+K +G LVV+DF+ T CG CK I ++L D V+ LK +V DE ++A
Sbjct: 16 TKASGKLVVLDFFATWCGPCKMISPKLAELSTQYADT---VVVLKVDV----DECEDIAM 68
Query: 173 RLKIKVNFSFVLF 185
I +FV
Sbjct: 69 EYNISSMPTFVFL 81
>sp|Q5JMR9|TRXY_ORYSJ Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0963400 PE=2 SV=2
Length = 168
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+T + F ++LEKS++ V+VDFY T CG C+Y+ ++ + GD K V
Sbjct: 64 QTFSSFDELLEKSEKP---VLVDFYATWCGPCQYMVPILQEVSEKLGD--------KIQV 112
Query: 161 ID-EYDEQSEVAERLKIKVNFSFVLF 185
+ + ++ + +A R +I+ +F++F
Sbjct: 113 VKIDTEKYTSIANRYQIEALPTFIIF 138
>sp|O14463|TRX1_SCHPO Thioredoxin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=trx1 PE=3 SV=3
Length = 103
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ +EF I+ + K LVVVDF+ T CG CK I F + D F+
Sbjct: 2 VKQVSDSSEFKSIVCQDK----LVVVDFFATWCGPCKAIAPKFEQFSNTYSD----ATFI 53
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V D+ SE+A + SF L+
Sbjct: 54 KVDV----DQLSEIAAEAGVHAMPSFFLY 78
>sp|P29429|THIO_EMENI Thioredoxin OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=TRX1 PE=1 SV=2
Length = 110
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI 154
E V + AEF EK VVVD + T CG CK I K + D
Sbjct: 5 EHVPPITSKAEF---QEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDAS---- 57
Query: 155 FLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
F + +V DE SEVA L I+ +F+LF
Sbjct: 58 FYQIDV----DELSEVAAELGIRAMPTFLLF 84
>sp|P29449|TRXH1_TOBAC Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1
Length = 126
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
E+FK K ET LVVVDF + CG C++I + + K + VIFLK +V
Sbjct: 25 EYFK---KGVETKKLVVVDFTASWCGPCRFIAPILADIAK----KMPHVIFLKVDV---- 73
Query: 165 DEQSEVAERLKIKVNFSFVLF 185
DE V+ ++ +FV
Sbjct: 74 DELKTVSAEWSVEAMPTFVFI 94
>sp|P11232|THIO_RAT Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2
Length = 105
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
LVVVDF T CG CK I+ F LC D+ + V+FL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFLEVDV----DDCQDVAADCEVKC 73
Query: 179 NFSFVLF 185
+F +
Sbjct: 74 MPTFQFY 80
>sp|Q43636|TRXH_RICCO Thioredoxin H-type OS=Ricinus communis PE=3 SV=1
Length = 118
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+K +T L+VVDF + CG C++I ++L K + V FLK +V DE
Sbjct: 21 LQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPN----VTFLKVDV----DELKT 72
Query: 170 VAERLKIKVNFSFVLFLTFNEFILMASVI 198
VA ++ S F+ E +M V+
Sbjct: 73 VAHEWAVE---SMPTFMFLKEGKIMDKVV 98
>sp|P10639|THIO_MOUSE Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3
Length = 105
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
LVVVDF T CG CK I+ F LC D+ + V+FL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFLEVDV----DDCQDVAADCEVKC 73
Query: 179 NFSFVLF 185
+F +
Sbjct: 74 MPTFQFY 80
>sp|Q38879|TRXH2_ARATH Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2
Length = 133
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +F + A + + KE+ L+VVDF + CG C+ IE + D V F+
Sbjct: 27 VLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFND----VDFV 82
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVL 184
K +V DE +VA+ + +FVL
Sbjct: 83 KLDV----DELPDVAKEFNVTAMPTFVL 106
>sp|P80028|TRXH_CHLRE Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3
Length = 113
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLK 157
L K KE +VVDF T CG CK I F L S D VIFLK
Sbjct: 18 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK 62
>sp|Q9V429|THIO2_DROME Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2
Length = 114
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+K +G LVV+DF+ T CG CK I +L D V+ LK +V DE ++A
Sbjct: 24 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV----DECEDIAM 76
Query: 173 RLKIKVNFSFVLF 185
I +FV
Sbjct: 77 EYNISSMPTFVFL 89
>sp|O17486|THIO_ECHGR Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2
Length = 107
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
LE + + L+V DF+ T CG CK + + K + VIF+K +V DE +
Sbjct: 15 LEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAK----ENEKVIFVKLDV----DECQD 66
Query: 170 VAERLKIKVNFSFVLF 185
VAE+ ++ + ++F
Sbjct: 67 VAEKYRVTAMPTLIVF 82
>sp|P75512|THIO_MYCPN Thioredoxin OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=trxA PE=3 SV=1
Length = 102
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179
V++DF+ CG CK F+K + + + V F K NV DEQ+++A KI
Sbjct: 21 VIIDFWAEWCGPCKITGPEFAK----AASEVSTVAFAKVNV----DEQTDIAAAYKITSL 72
Query: 180 FSFVLF 185
+ VLF
Sbjct: 73 PTIVLF 78
>sp|P47938|THIO1_DROME Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1
Length = 107
Score = 37.4 bits (85), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178
L+V+DFY T CG CK +E L + + + LK +V D+ E+ ER K++
Sbjct: 21 LIVLDFYATWCGPCKEMESTVKSLARKYSSK---AVVLKIDV----DKFEELTERYKVRS 73
Query: 179 NFSFVLF 185
+FV
Sbjct: 74 MPTFVFL 80
>sp|Q9USR1|TXL1_SCHPO Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=txl1 PE=4 SV=1
Length = 290
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179
+ VD Y CG CK I FS+L + +F K NV DEQ ++A L +K
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPK--FVFAKVNV----DEQRQIASGLGVKAM 75
Query: 180 FSFVLF 185
+FV F
Sbjct: 76 PTFVFF 81
>sp|P34723|THIO_PENCH Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1
Length = 106
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 91 LCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQE 150
+ P++ V E+K EK + VVVDF+ T CG CK I KL +
Sbjct: 3 VTPIKSVAEYK---------EKVTDATGPVVVDFHATWCGPCKAIAPALEKLS----ETH 49
Query: 151 APVIFLKHNVIDEYDEQSEVA 171
+ F K +V DE SEVA
Sbjct: 50 TGIQFYKVDV----DELSEVA 66
>sp|O65049|TRXH_PICMA Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1
Length = 125
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+++ +T LV VDF T CG C+ I F +L K + + FLK +V DE +
Sbjct: 19 LQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPE----IFFLKVDV----DELRD 70
Query: 170 VAERLKIKVNFSFVL 184
VA+ ++ +F+
Sbjct: 71 VAQEWDVEAMPTFIF 85
>sp|Q07090|TRXH2_TOBAC Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1
Length = 118
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+K + L+VVDF + CG CK+I +++L K + V FLK +V DE
Sbjct: 20 LQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAK----KMPTVTFLKVDV----DELKS 71
Query: 170 VAERLKIKVNFSFVLFL 186
VA ++ +F +FL
Sbjct: 72 VATDWAVEAMPTF-MFL 87
>sp|Q39241|TRXH5_ARATH Thioredoxin H5 OS=Arabidopsis thaliana GN=TRX5 PE=1 SV=1
Length = 118
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
++ + E+ L+V+DF + C C++I F+++ K + V+F K +V DE
Sbjct: 20 VKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTN----VVFFKIDV----DELQA 71
Query: 170 VAERLKIKVNFSFVLF 185
VA+ K++ +FV
Sbjct: 72 VAQEFKVEAMPTFVFM 87
>sp|Q39239|TRXH4_ARATH Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2
Length = 119
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+K+KE+ L+V+DF + C C+ I F+ L K + IF K +V DE
Sbjct: 21 LDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKF---MSSAIFFKVDV----DELQS 73
Query: 170 VAERLKIKVNFSFVLF 185
VA+ ++ +FV
Sbjct: 74 VAKEFGVEAMPTFVFI 89
>sp|P22803|TRX2_YEAST Thioredoxin-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRX2 PE=1 SV=3
Length = 104
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG CK I K +Q + F
Sbjct: 2 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKF----AEQYSDAAFY 54
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K +V DE S+VA++ ++ + + +
Sbjct: 55 KLDV----DEVSDVAQKAEVSSMPTLIFY 79
>sp|Q39362|TRXH2_BRANA Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1
Length = 119
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+ +K++ L+V+DF + C C+ I F+ L K + IF K +V DE
Sbjct: 21 LDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKF---MSSAIFFKVDV----DELQN 73
Query: 170 VAERLKIKVNFSFVLF 185
VA+ ++ +FVL
Sbjct: 74 VAQEFGVEAMPTFVLI 89
>sp|P29451|THIO_MACMU Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2
Length = 105
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ A F + L+ + + LVVVDF T CG CK I+ F L ++ + V+FL
Sbjct: 2 VKQIESKAAFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVVFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
+ +V D+ +VA ++K +F F
Sbjct: 56 EVDV----DDCQDVASECEVKCMPTFQFF 80
>sp|P60226|THIO1_DROYA Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2
Length = 107
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
+T +F K +E + + L+V+DFY CG CK +E L + + + LK +V
Sbjct: 5 RTMTDFHKRIEAADD--KLIVLDFYANWCGPCKDMESTVKSLARKYSTK---AVVLKIDV 59
Query: 161 IDEYDEQSEVAERLKIKVNFSFVLF 185
D+ E+ ER K++ +FV
Sbjct: 60 ----DKFEELTERYKVRSMPTFVFL 80
>sp|Q9TW67|NGLY1_CAEEL Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Caenorhabditis elegans GN=png-1 PE=1 SV=1
Length = 606
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V E + E ILE+S + L+++DF+ CG C+ I F + G+ FL
Sbjct: 3 VTEVGSLPELNNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGN----ATFL 57
Query: 157 KHNVIDEYDEQSEVAERLKIKVNFSFVLF 185
K N D ++ +R I +F+
Sbjct: 58 KVNC----DVARDIVQRYNISAMPTFIFL 82
>sp|Q9XFH8|TRXF1_ARATH Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730
PE=1 SV=2
Length = 178
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD 165
F+ I++ + E LVV+D Y CG CK I + L + D V+FLK +D
Sbjct: 78 FWPIVKAAGE--KLVVLDMYTQWCGPCKVIAPKYKALSEKYDD----VVFLK---LDCNP 128
Query: 166 EQSEVAERLKIKVNFSFVLF 185
+ +A+ L I+V +F +
Sbjct: 129 DNRPLAKELGIRVVPTFKIL 148
>sp|O48897|TRXF_BRANA Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2
SV=1
Length = 182
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD 165
F+ I++ + E +VV+D Y CG CK I + L + D V+FLK +D
Sbjct: 81 FWPIVKAAGE--KIVVLDMYTQWCGPCKVIAPKYKALSEKYED----VVFLK---LDCNP 131
Query: 166 EQSEVAERLKIKVNFSFVLF 185
E +A+ L I+V +F +
Sbjct: 132 ENRPLAKELGIRVVPTFKIL 151
>sp|O64394|TRXH_WHEAT Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3
Length = 127
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
+E++ LVV+DF + CG C+ + F+ L K + +FLK +V DE
Sbjct: 33 IEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAK----KFPAAVFLKVDV----DELKP 84
Query: 170 VAERLKIKVNFSFVLFL 186
+AE+ ++ +F LF+
Sbjct: 85 IAEQFSVEAMPTF-LFM 100
>sp|O83889|THIO_TREPA Thioredoxin OS=Treponema pallidum (strain Nichols) GN=trxA PE=3
SV=1
Length = 105
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCK--GSGDQEAPVIFLKHNVIDEYDEQ 167
+ K+ ET LV+VDF+ CGSCK + ++ GSG V+ K NV D+ D
Sbjct: 11 VRKTIETNPLVIVDFWAPWCGSCKMLGPVLEEVESEVGSG-----VVIGKLNVDDDQDLA 65
Query: 168 SE 169
E
Sbjct: 66 VE 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,455,411
Number of Sequences: 539616
Number of extensions: 2853643
Number of successful extensions: 7217
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 7152
Number of HSP's gapped (non-prelim): 136
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)