Query 028976
Match_columns 201
No_of_seqs 234 out of 1988
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 8.3E-24 1.8E-28 160.8 9.3 89 99-197 46-134 (150)
2 cd02954 DIM1 Dim1 family; Dim1 99.9 2.9E-23 6.3E-28 152.8 11.8 86 102-196 1-86 (114)
3 KOG0907 Thioredoxin [Posttrans 99.9 1E-22 2.2E-27 148.4 10.3 89 102-198 6-94 (106)
4 PHA02278 thioredoxin-like prot 99.9 3.8E-22 8.3E-27 144.9 11.3 90 101-197 2-91 (103)
5 cd02985 TRX_CDSP32 TRX family, 99.9 7.9E-22 1.7E-26 143.0 11.7 89 102-197 2-90 (103)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.2E-21 4.7E-26 143.2 10.9 91 97-196 11-102 (113)
7 cd02948 TRX_NDPK TRX domain, T 99.9 5.4E-21 1.2E-25 138.2 12.1 88 99-197 3-90 (102)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.9E-21 6.2E-26 139.0 10.2 87 98-196 4-90 (101)
9 KOG0190 Protein disulfide isom 99.9 3.4E-22 7.4E-27 177.8 6.2 154 17-190 279-450 (493)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1E-20 2.3E-25 136.5 11.2 86 102-197 7-93 (104)
11 PLN00410 U5 snRNP protein, DIM 99.8 9.9E-21 2.1E-25 144.4 11.3 90 98-196 6-97 (142)
12 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1.4E-20 3.1E-25 138.8 11.5 89 97-197 6-94 (113)
13 cd02986 DLP Dim1 family, Dim1- 99.8 3.3E-20 7.1E-25 136.0 11.6 81 103-192 2-82 (114)
14 cd02956 ybbN ybbN protein fami 99.8 2.6E-20 5.6E-25 132.5 10.4 84 105-197 2-85 (96)
15 cd03065 PDI_b_Calsequestrin_N 99.8 2.5E-20 5.4E-25 138.8 10.4 84 102-196 15-104 (120)
16 PF00085 Thioredoxin: Thioredo 99.8 6.2E-20 1.3E-24 131.1 11.2 87 101-197 4-90 (103)
17 cd02957 Phd_like Phosducin (Ph 99.8 6E-20 1.3E-24 135.1 11.2 90 97-197 6-95 (113)
18 cd02996 PDI_a_ERp44 PDIa famil 99.8 8.3E-20 1.8E-24 133.0 11.2 86 97-191 3-91 (108)
19 cd02962 TMX2 TMX2 family; comp 99.8 1.8E-19 3.8E-24 139.5 13.3 91 97-196 30-126 (152)
20 cd02999 PDI_a_ERp44_like PDIa 99.8 6.4E-20 1.4E-24 132.4 9.8 83 103-196 6-89 (100)
21 PTZ00051 thioredoxin; Provisio 99.8 2.9E-19 6.3E-24 127.4 11.9 89 97-197 2-90 (98)
22 cd02965 HyaE HyaE family; HyaE 99.8 1.3E-19 2.9E-24 132.7 9.9 85 102-197 16-102 (111)
23 cd02984 TRX_PICOT TRX domain, 99.8 3.3E-19 7.2E-24 126.7 11.6 87 102-197 1-87 (97)
24 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.7E-19 8E-24 127.4 11.4 87 102-197 6-92 (102)
25 PRK09381 trxA thioredoxin; Pro 99.8 3.7E-19 7.9E-24 129.6 11.2 90 97-197 5-94 (109)
26 COG3118 Thioredoxin domain-con 99.8 1.3E-19 2.9E-24 151.2 9.3 92 97-197 25-116 (304)
27 cd02987 Phd_like_Phd Phosducin 99.8 5.1E-19 1.1E-23 140.0 12.0 93 95-197 62-154 (175)
28 cd02963 TRX_DnaJ TRX domain, D 99.8 3.3E-19 7.1E-24 130.9 10.1 88 102-196 10-97 (111)
29 KOG0908 Thioredoxin-like prote 99.8 1.6E-19 3.4E-24 146.9 8.9 90 97-196 3-92 (288)
30 cd03002 PDI_a_MPD1_like PDI fa 99.8 4.6E-19 1E-23 128.6 10.0 79 102-190 6-86 (109)
31 cd02994 PDI_a_TMX PDIa family, 99.8 1E-18 2.2E-23 125.5 11.1 86 97-196 3-88 (101)
32 cd02992 PDI_a_QSOX PDIa family 99.8 7.6E-19 1.6E-23 129.7 10.2 87 98-190 4-90 (114)
33 PRK10996 thioredoxin 2; Provis 99.8 1.6E-18 3.4E-23 132.3 11.6 85 102-197 41-125 (139)
34 cd02997 PDI_a_PDIR PDIa family 99.8 2.6E-18 5.7E-23 123.2 11.1 87 102-197 6-94 (104)
35 cd02953 DsbDgamma DsbD gamma f 99.8 3E-18 6.5E-23 123.8 9.3 87 104-197 2-93 (104)
36 cd03001 PDI_a_P5 PDIa family, 99.8 6.7E-18 1.4E-22 121.0 10.8 78 102-189 6-83 (103)
37 PTZ00443 Thioredoxin domain-co 99.8 5.9E-18 1.3E-22 138.6 11.4 92 97-196 32-124 (224)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 7E-18 1.5E-22 120.9 10.1 79 102-189 6-84 (104)
39 KOG0190 Protein disulfide isom 99.8 1.8E-18 3.8E-23 154.2 8.4 85 97-190 27-111 (493)
40 cd03000 PDI_a_TMX3 PDIa family 99.7 7.1E-18 1.5E-22 122.0 9.3 79 103-190 6-84 (104)
41 TIGR01068 thioredoxin thioredo 99.7 2.1E-17 4.6E-22 117.3 11.2 86 102-197 2-87 (101)
42 cd02993 PDI_a_APS_reductase PD 99.7 1.5E-17 3.3E-22 121.4 10.5 86 97-190 3-90 (109)
43 TIGR01126 pdi_dom protein disu 99.7 1.7E-17 3.7E-22 118.3 10.3 86 102-196 2-87 (102)
44 cd02950 TxlA TRX-like protein 99.7 1.3E-17 2.7E-22 127.8 10.2 87 102-197 9-96 (142)
45 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.1E-17 4.5E-22 118.5 9.4 80 102-189 6-86 (105)
46 cd02949 TRX_NTR TRX domain, no 99.7 5.8E-17 1.3E-21 115.8 11.4 81 107-197 6-86 (97)
47 cd02952 TRP14_like Human TRX-r 99.7 4.1E-17 8.9E-22 121.2 9.7 87 100-191 6-103 (119)
48 cd02988 Phd_like_VIAF Phosduci 99.7 6.4E-17 1.4E-21 129.8 11.4 89 96-197 83-171 (192)
49 cd02975 PfPDO_like_N Pyrococcu 99.7 1.1E-16 2.3E-21 118.0 9.7 80 106-197 15-96 (113)
50 cd02961 PDI_a_family Protein D 99.7 1.6E-16 3.5E-21 112.0 9.8 86 102-196 4-90 (101)
51 PTZ00102 disulphide isomerase; 99.7 5.3E-17 1.2E-21 145.7 8.8 166 17-196 271-450 (477)
52 cd02951 SoxW SoxW family; SoxW 99.7 4.3E-16 9.4E-21 116.1 9.8 88 104-198 4-106 (125)
53 TIGR01295 PedC_BrcD bacterioci 99.7 9.6E-16 2.1E-20 114.5 11.2 87 102-197 12-109 (122)
54 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.1E-16 1.1E-20 114.7 9.3 78 101-189 6-91 (116)
55 TIGR01130 ER_PDI_fam protein d 99.7 5.9E-16 1.3E-20 137.7 11.5 87 102-196 7-94 (462)
56 PTZ00102 disulphide isomerase; 99.6 1E-15 2.2E-20 137.4 11.5 82 102-191 38-119 (477)
57 cd02947 TRX_family TRX family; 99.6 2.3E-15 5E-20 104.0 9.8 81 105-197 2-82 (93)
58 cd02959 ERp19 Endoplasmic reti 99.6 4.5E-16 9.7E-21 115.5 6.3 86 105-196 7-95 (117)
59 KOG4277 Uncharacterized conser 99.6 3.5E-16 7.6E-21 130.8 5.5 74 116-193 42-115 (468)
60 TIGR00424 APS_reduc 5'-adenyly 99.6 2.4E-15 5.3E-20 134.4 11.1 87 96-190 352-440 (463)
61 PLN02309 5'-adenylylsulfate re 99.6 3.2E-15 6.9E-20 133.6 11.6 88 95-190 345-434 (457)
62 PTZ00062 glutaredoxin; Provisi 99.6 2.4E-15 5.1E-20 121.5 9.7 78 101-197 4-81 (204)
63 PRK00293 dipZ thiol:disulfide 99.6 4.6E-15 9.9E-20 136.6 10.3 95 98-196 455-555 (571)
64 PF13905 Thioredoxin_8: Thiore 99.5 2.3E-13 5E-18 96.3 10.1 74 117-191 1-95 (95)
65 PHA02125 thioredoxin-like prot 99.5 1.1E-13 2.3E-18 94.6 7.6 61 121-197 2-62 (75)
66 cd02982 PDI_b'_family Protein 99.5 1.4E-13 3E-18 98.7 8.5 70 116-192 11-84 (103)
67 cd02955 SSP411 TRX domain, SSP 99.5 2.8E-13 6E-18 101.5 10.2 81 103-194 5-97 (124)
68 cd03009 TryX_like_TryX_NRX Try 99.5 2E-13 4.2E-18 102.4 9.3 76 116-191 17-112 (131)
69 cd03008 TryX_like_RdCVF Trypar 99.5 2.4E-13 5.1E-18 104.5 9.7 77 116-192 24-126 (146)
70 cd02964 TryX_like_family Trypa 99.5 2.8E-13 6E-18 102.0 9.3 76 116-191 16-112 (132)
71 KOG1731 FAD-dependent sulfhydr 99.5 2.5E-14 5.4E-19 128.2 3.8 88 95-188 39-126 (606)
72 TIGR00411 redox_disulf_1 small 99.5 3.5E-13 7.6E-18 92.6 8.6 61 120-189 2-62 (82)
73 TIGR02187 GlrX_arch Glutaredox 99.5 3.1E-13 6.6E-18 110.1 9.5 76 116-197 18-97 (215)
74 TIGR01130 ER_PDI_fam protein d 99.4 1.9E-13 4E-18 121.7 7.7 82 101-191 351-432 (462)
75 PF13098 Thioredoxin_2: Thiore 99.4 4.2E-13 9.2E-18 97.6 6.7 81 115-198 3-103 (112)
76 TIGR02740 TraF-like TraF-like 99.4 1.7E-12 3.8E-17 109.3 11.2 74 116-194 165-246 (271)
77 TIGR00412 redox_disulf_2 small 99.4 1E-12 2.3E-17 90.0 7.8 59 121-191 2-60 (76)
78 KOG0912 Thiol-disulfide isomer 99.4 5.3E-13 1.1E-17 111.8 7.0 82 102-191 2-85 (375)
79 KOG0191 Thioredoxin/protein di 99.4 8E-13 1.7E-17 116.4 8.2 80 103-192 36-115 (383)
80 cd02973 TRX_GRX_like Thioredox 99.4 2.4E-12 5.2E-17 85.5 7.2 56 121-184 3-58 (67)
81 TIGR02187 GlrX_arch Glutaredox 99.4 4.8E-12 1E-16 103.1 10.1 67 116-190 132-198 (215)
82 cd03010 TlpA_like_DsbE TlpA-li 99.4 3.6E-12 7.9E-17 94.9 8.6 77 116-197 24-120 (127)
83 COG4232 Thiol:disulfide interc 99.3 4.4E-12 9.5E-17 114.7 9.0 96 99-198 458-555 (569)
84 PRK14018 trifunctional thiored 99.3 5.6E-12 1.2E-16 114.3 9.4 80 116-197 55-159 (521)
85 TIGR02738 TrbB type-F conjugat 99.3 8.5E-12 1.9E-16 96.7 8.8 77 116-197 49-139 (153)
86 cd02960 AGR Anterior Gradient 99.3 4.9E-12 1.1E-16 95.2 6.7 86 104-197 10-99 (130)
87 PRK15412 thiol:disulfide inter 99.3 1E-11 2.2E-16 99.0 8.8 76 116-197 67-162 (185)
88 PF13899 Thioredoxin_7: Thiore 99.3 4.8E-12 1E-16 87.8 5.9 75 105-187 5-82 (82)
89 cd03012 TlpA_like_DipZ_like Tl 99.3 2.5E-11 5.3E-16 90.6 10.1 79 116-196 22-124 (126)
90 cd02958 UAS UAS family; UAS is 99.3 2.9E-11 6.3E-16 88.8 9.9 89 104-197 4-97 (114)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 1.9E-11 4.1E-16 90.2 8.1 77 116-197 19-112 (123)
92 cd02966 TlpA_like_family TlpA- 99.3 3.9E-11 8.5E-16 85.7 9.4 77 116-194 18-114 (116)
93 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 5.5E-11 1.2E-15 84.0 9.6 67 116-192 11-77 (89)
94 KOG0191 Thioredoxin/protein di 99.2 2.1E-11 4.6E-16 107.3 8.5 82 101-190 149-230 (383)
95 TIGR00385 dsbE periplasmic pro 99.2 5.2E-11 1.1E-15 93.8 8.2 76 116-197 62-157 (173)
96 PLN02919 haloacid dehalogenase 99.2 5.8E-11 1.3E-15 116.2 9.9 79 116-196 419-521 (1057)
97 cd02967 mauD Methylamine utili 99.2 6.6E-11 1.4E-15 86.2 7.2 73 116-192 20-109 (114)
98 PRK03147 thiol-disulfide oxido 99.2 1.7E-10 3.8E-15 90.0 9.9 80 116-197 60-158 (173)
99 PF08534 Redoxin: Redoxin; In 99.2 1.4E-10 3E-15 88.3 8.9 79 116-196 27-133 (146)
100 smart00594 UAS UAS domain. 99.1 7.7E-10 1.7E-14 82.4 10.4 82 102-188 12-96 (122)
101 COG0526 TrxA Thiol-disulfide i 99.1 4.8E-10 1E-14 79.3 6.8 69 117-192 32-103 (127)
102 PRK13728 conjugal transfer pro 99.1 1.1E-09 2.5E-14 86.8 9.2 72 121-197 73-157 (181)
103 TIGR02661 MauD methylamine deh 99.0 1.4E-09 3E-14 87.0 9.1 74 116-192 73-160 (189)
104 KOG1672 ATP binding protein [P 99.0 1E-09 2.3E-14 86.7 7.6 89 97-197 68-156 (211)
105 KOG0914 Thioredoxin-like prote 99.0 3.7E-10 8E-15 90.8 5.1 94 94-195 123-222 (265)
106 TIGR01626 ytfJ_HI0045 conserve 99.0 1.3E-09 2.8E-14 86.8 7.4 77 116-198 58-167 (184)
107 PRK11509 hydrogenase-1 operon 99.0 6.3E-09 1.4E-13 78.5 9.7 86 102-197 23-110 (132)
108 KOG2501 Thioredoxin, nucleored 98.9 5.1E-09 1.1E-13 80.7 7.6 76 116-191 32-128 (157)
109 PTZ00056 glutathione peroxidas 98.9 9.8E-09 2.1E-13 82.8 9.2 43 116-160 38-80 (199)
110 cd02969 PRX_like1 Peroxiredoxi 98.9 1.4E-08 3E-13 79.5 9.9 76 116-193 24-124 (171)
111 PF02114 Phosducin: Phosducin; 98.9 4.1E-09 8.8E-14 88.5 6.9 92 96-197 126-217 (265)
112 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 1.6E-08 3.5E-13 74.3 8.7 75 116-192 24-122 (124)
113 PLN02399 phospholipid hydroper 98.8 2.2E-08 4.7E-13 82.8 9.5 43 116-160 98-140 (236)
114 cd01659 TRX_superfamily Thiore 98.8 1.8E-08 4E-13 63.4 7.0 60 121-188 1-63 (69)
115 cd00340 GSH_Peroxidase Glutath 98.8 2.6E-08 5.7E-13 76.6 9.2 42 116-160 21-62 (152)
116 PF06110 DUF953: Eukaryotic pr 98.8 3.7E-08 8E-13 73.1 8.2 87 101-190 3-101 (119)
117 PF03190 Thioredox_DsbH: Prote 98.8 2E-08 4.3E-13 78.3 7.0 84 102-196 26-120 (163)
118 TIGR02196 GlrX_YruB Glutaredox 98.8 3.3E-08 7.2E-13 65.6 6.9 56 121-185 2-57 (74)
119 TIGR02540 gpx7 putative glutat 98.7 4.7E-08 1E-12 75.2 7.3 43 116-160 21-63 (153)
120 TIGR02200 GlrX_actino Glutared 98.7 3.9E-08 8.4E-13 66.3 5.8 57 121-191 2-63 (77)
121 cd02970 PRX_like2 Peroxiredoxi 98.7 1.6E-07 3.4E-12 71.1 8.9 74 117-192 24-143 (149)
122 COG2143 Thioredoxin-related pr 98.6 3.3E-07 7.2E-12 70.4 10.1 82 114-198 39-136 (182)
123 cd03017 PRX_BCP Peroxiredoxin 98.6 1.5E-07 3.3E-12 70.7 8.1 80 116-197 22-129 (140)
124 PRK00522 tpx lipid hydroperoxi 98.6 2.1E-07 4.5E-12 72.9 8.6 72 116-191 43-143 (167)
125 PLN02412 probable glutathione 98.6 1.9E-07 4.2E-12 73.1 7.7 44 116-161 28-71 (167)
126 KOG0911 Glutaredoxin-related p 98.6 2.7E-08 5.9E-13 80.5 2.5 85 98-196 4-88 (227)
127 PF14595 Thioredoxin_9: Thiore 98.5 7.2E-07 1.6E-11 67.2 9.4 71 116-194 40-114 (129)
128 cd03014 PRX_Atyp2cys Peroxired 98.5 4.5E-07 9.7E-12 68.6 8.3 76 116-195 25-127 (143)
129 cd03018 PRX_AhpE_like Peroxire 98.5 5.5E-07 1.2E-11 68.4 8.3 79 116-196 26-132 (149)
130 TIGR03137 AhpC peroxiredoxin. 98.5 5.2E-07 1.1E-11 72.0 8.2 75 116-192 30-132 (187)
131 KOG3425 Uncharacterized conser 98.5 5.2E-07 1.1E-11 66.3 7.3 82 102-187 11-104 (128)
132 cd03015 PRX_Typ2cys Peroxiredo 98.5 5E-07 1.1E-11 70.9 7.9 75 116-192 28-133 (173)
133 TIGR02180 GRX_euk Glutaredoxin 98.5 3.8E-07 8.3E-12 62.5 6.2 63 121-190 1-64 (84)
134 cd02968 SCO SCO (an acronym fo 98.5 7.9E-07 1.7E-11 66.9 8.2 45 116-160 21-67 (142)
135 KOG3414 Component of the U4/U6 98.4 3E-06 6.5E-11 62.8 10.2 85 99-192 7-91 (142)
136 PF13728 TraF: F plasmid trans 98.4 2.2E-06 4.8E-11 70.0 10.3 75 108-189 113-194 (215)
137 cd02971 PRX_family Peroxiredox 98.4 1.4E-06 3E-11 65.3 8.3 79 116-196 21-128 (140)
138 PTZ00256 glutathione peroxidas 98.4 9.5E-07 2.1E-11 70.2 7.4 43 116-160 39-82 (183)
139 cd02991 UAS_ETEA UAS family, E 98.4 3E-06 6.5E-11 62.7 9.3 76 105-186 5-84 (116)
140 PRK09437 bcp thioredoxin-depen 98.4 1.3E-06 2.8E-11 67.1 7.5 79 116-196 29-138 (154)
141 PRK10382 alkyl hydroperoxide r 98.3 2.8E-06 6.2E-11 67.9 8.8 76 116-193 30-133 (187)
142 PRK10606 btuE putative glutath 98.3 2.5E-06 5.4E-11 68.0 8.3 67 116-186 24-98 (183)
143 PRK11200 grxA glutaredoxin 1; 98.3 3.7E-06 8E-11 58.4 7.0 64 121-190 3-68 (85)
144 PF02966 DIM1: Mitosis protein 98.3 2.2E-05 4.9E-10 58.7 11.1 84 99-192 4-88 (133)
145 PRK13190 putative peroxiredoxi 98.3 4.5E-06 9.8E-11 67.4 8.1 76 116-193 26-131 (202)
146 PRK15000 peroxidase; Provision 98.2 5.4E-06 1.2E-10 66.9 8.1 75 116-192 33-138 (200)
147 PF11009 DUF2847: Protein of u 98.2 2.2E-05 4.9E-10 56.9 10.0 89 99-192 3-92 (105)
148 TIGR02739 TraF type-F conjugat 98.1 2.5E-05 5.5E-10 65.3 10.3 76 107-189 142-224 (256)
149 KOG0913 Thiol-disulfide isomer 98.1 4.7E-07 1E-11 73.8 -0.5 77 101-189 29-105 (248)
150 PRK13599 putative peroxiredoxi 98.1 1.7E-05 3.6E-10 64.8 7.5 77 116-194 27-134 (215)
151 PTZ00137 2-Cys peroxiredoxin; 98.0 2.7E-05 5.8E-10 65.4 8.8 76 116-193 97-202 (261)
152 cd02976 NrdH NrdH-redoxin (Nrd 98.0 2.4E-05 5.3E-10 51.5 6.7 55 121-184 2-56 (73)
153 KOG3171 Conserved phosducin-li 98.0 1.7E-05 3.6E-10 64.1 6.9 86 96-191 139-224 (273)
154 PF00462 Glutaredoxin: Glutare 98.0 3.4E-05 7.5E-10 49.8 6.6 55 121-184 1-55 (60)
155 PRK13189 peroxiredoxin; Provis 98.0 3.7E-05 8.1E-10 63.0 7.9 75 116-192 34-139 (222)
156 cd03419 GRX_GRXh_1_2_like Glut 98.0 3.6E-05 7.7E-10 52.4 6.7 61 121-190 2-63 (82)
157 PRK13191 putative peroxiredoxi 97.9 3.8E-05 8.2E-10 62.7 7.8 76 116-193 32-138 (215)
158 cd03016 PRX_1cys Peroxiredoxin 97.9 4.3E-05 9.3E-10 61.7 7.8 73 118-192 26-130 (203)
159 PRK13703 conjugal pilus assemb 97.9 9.4E-05 2E-09 61.6 9.8 77 108-189 136-217 (248)
160 PF13192 Thioredoxin_3: Thiore 97.9 7.5E-05 1.6E-09 50.8 7.8 56 122-189 3-58 (76)
161 PTZ00253 tryparedoxin peroxida 97.9 7.2E-05 1.6E-09 60.1 8.6 75 116-192 35-140 (199)
162 cd02066 GRX_family Glutaredoxi 97.9 5.1E-05 1.1E-09 49.6 6.5 59 121-190 2-60 (72)
163 TIGR02183 GRXA Glutaredoxin, G 97.9 4.3E-05 9.4E-10 53.3 6.1 63 121-189 2-66 (86)
164 PF07449 HyaE: Hydrogenase-1 e 97.7 0.00012 2.5E-09 53.4 6.4 84 102-197 15-101 (107)
165 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 0.00025 5.4E-09 56.8 8.5 67 116-190 76-183 (197)
166 TIGR02190 GlrX-dom Glutaredoxi 97.7 0.00017 3.7E-09 49.3 6.2 62 117-190 6-67 (79)
167 cd02972 DsbA_family DsbA famil 97.6 0.00045 9.9E-09 47.5 7.6 63 121-186 1-91 (98)
168 PRK10877 protein disulfide iso 97.5 0.00058 1.3E-08 56.4 9.0 68 116-190 106-213 (232)
169 PRK15317 alkyl hydroperoxide r 97.5 0.00056 1.2E-08 62.6 9.8 65 116-190 115-179 (517)
170 cd03019 DsbA_DsbA DsbA family, 97.5 0.00068 1.5E-08 52.6 8.4 33 116-148 14-46 (178)
171 TIGR03143 AhpF_homolog putativ 97.5 0.00063 1.4E-08 62.9 9.0 60 117-184 475-535 (555)
172 TIGR02181 GRX_bact Glutaredoxi 97.4 0.00026 5.7E-09 48.0 4.7 57 122-189 2-58 (79)
173 PRK11657 dsbG disulfide isomer 97.4 0.001 2.2E-08 55.6 8.7 77 116-197 116-238 (251)
174 PHA03050 glutaredoxin; Provisi 97.4 0.00047 1E-08 50.3 5.8 57 121-183 15-74 (108)
175 cd03027 GRX_DEP Glutaredoxin ( 97.4 0.00063 1.4E-08 45.5 6.0 58 121-189 3-60 (73)
176 PF01216 Calsequestrin: Calseq 97.4 0.0015 3.3E-08 56.5 9.5 83 102-193 40-127 (383)
177 cd03418 GRX_GRXb_1_3_like Glut 97.4 0.00055 1.2E-08 45.7 5.6 58 121-189 2-60 (75)
178 PF13848 Thioredoxin_6: Thiore 97.3 0.0033 7.1E-08 48.9 10.5 82 97-190 79-164 (184)
179 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.00061 1.3E-08 45.6 5.1 53 122-184 2-54 (72)
180 TIGR00365 monothiol glutaredox 97.3 0.0017 3.7E-08 46.3 7.4 63 116-189 10-76 (97)
181 cd03028 GRX_PICOT_like Glutare 97.2 0.0016 3.5E-08 45.7 6.6 63 116-189 6-72 (90)
182 PRK10329 glutaredoxin-like pro 97.2 0.0013 2.9E-08 45.3 6.0 54 121-184 3-56 (81)
183 PRK10954 periplasmic protein d 97.2 0.0017 3.6E-08 52.5 7.6 40 117-159 37-79 (207)
184 KOG3170 Conserved phosducin-li 97.2 0.001 2.2E-08 53.4 5.9 90 96-198 92-181 (240)
185 cd03029 GRX_hybridPRX5 Glutare 97.1 0.0021 4.6E-08 42.8 6.5 58 121-190 3-60 (72)
186 TIGR02189 GlrX-like_plant Glut 97.1 0.0018 3.8E-08 46.4 6.2 58 121-189 10-70 (99)
187 TIGR03140 AhpF alkyl hydropero 97.1 0.004 8.7E-08 57.0 10.0 65 116-190 116-180 (515)
188 PRK10638 glutaredoxin 3; Provi 97.0 0.0022 4.8E-08 44.0 6.0 59 121-190 4-62 (83)
189 cd03023 DsbA_Com1_like DsbA fa 96.9 0.0024 5.2E-08 48.0 5.9 33 116-148 4-36 (154)
190 cd02981 PDI_b_family Protein D 96.8 0.013 2.9E-07 40.9 8.6 72 99-188 3-74 (97)
191 PF07912 ERp29_N: ERp29, N-ter 96.7 0.012 2.7E-07 43.6 8.1 81 102-189 10-94 (126)
192 COG1331 Highly conserved prote 96.7 0.0041 9E-08 58.1 6.7 78 102-190 32-120 (667)
193 TIGR03143 AhpF_homolog putativ 96.5 0.026 5.7E-07 52.3 10.5 86 103-198 354-441 (555)
194 KOG2603 Oligosaccharyltransfer 96.5 0.013 2.8E-07 50.1 7.5 81 102-187 46-135 (331)
195 COG0695 GrxC Glutaredoxin and 96.4 0.011 2.5E-07 40.5 5.6 55 121-184 3-59 (80)
196 PF13743 Thioredoxin_5: Thiore 96.3 0.023 5E-07 44.8 7.8 26 123-148 2-27 (176)
197 PF05768 DUF836: Glutaredoxin- 96.3 0.015 3.2E-07 39.9 5.7 54 121-184 2-55 (81)
198 cd03067 PDI_b_PDIR_N PDIb fami 96.1 0.048 1E-06 39.2 7.7 81 99-189 5-90 (112)
199 cd02983 P5_C P5 family, C-term 96.1 0.09 1.9E-06 39.5 9.8 82 97-189 4-92 (130)
200 cd03072 PDI_b'_ERp44 PDIb' fam 96.1 0.047 1E-06 39.8 8.0 74 102-188 5-83 (111)
201 PRK10824 glutaredoxin-4; Provi 96.1 0.017 3.6E-07 42.7 5.6 59 116-183 13-75 (115)
202 COG1225 Bcp Peroxiredoxin [Pos 95.8 0.066 1.4E-06 41.6 8.0 75 116-192 29-133 (157)
203 PTZ00062 glutaredoxin; Provisi 95.6 0.057 1.2E-06 43.8 7.2 59 116-183 111-173 (204)
204 cd03073 PDI_b'_ERp72_ERp57 PDI 95.5 0.15 3.4E-06 37.1 8.7 52 130-188 31-87 (111)
205 PF13462 Thioredoxin_4: Thiore 95.5 0.062 1.3E-06 40.7 6.8 44 116-160 11-54 (162)
206 cd03013 PRX5_like Peroxiredoxi 95.4 0.045 9.8E-07 42.2 5.8 43 116-160 28-73 (155)
207 KOG1752 Glutaredoxin and relat 95.0 0.18 4E-06 36.4 7.6 67 105-184 6-73 (104)
208 PRK12759 bifunctional gluaredo 94.7 0.058 1.3E-06 48.2 5.3 54 121-184 4-66 (410)
209 cd03031 GRX_GRX_like Glutaredo 93.0 0.33 7.2E-06 37.3 6.0 54 121-183 2-65 (147)
210 cd02978 KaiB_like KaiB-like fa 92.3 0.65 1.4E-05 31.3 5.9 60 120-185 3-62 (72)
211 PRK09301 circadian clock prote 89.5 1.4 2.9E-05 31.9 5.7 64 116-185 4-67 (103)
212 PF01323 DSBA: DSBA-like thior 89.5 3.1 6.6E-05 32.3 8.4 37 121-159 2-38 (193)
213 TIGR02654 circ_KaiB circadian 89.2 1.5 3.3E-05 30.7 5.6 62 118-185 3-64 (87)
214 cd03069 PDI_b_ERp57 PDIb famil 89.1 4.2 9E-05 28.9 8.2 70 98-186 3-72 (104)
215 KOG2640 Thioredoxin [Function 88.8 0.085 1.8E-06 45.1 -1.0 64 116-186 75-138 (319)
216 PF02630 SCO1-SenC: SCO1/SenC; 88.8 1.7 3.7E-05 34.0 6.4 47 116-162 51-98 (174)
217 cd03060 GST_N_Omega_like GST_N 88.7 1.4 3.1E-05 28.6 5.2 58 122-190 2-59 (71)
218 PHA03075 glutaredoxin-like pro 87.1 1 2.2E-05 33.2 3.8 29 118-146 2-30 (123)
219 cd03051 GST_N_GTT2_like GST_N 86.9 1.9 4.2E-05 27.7 5.0 56 122-184 2-57 (74)
220 PF13848 Thioredoxin_6: Thiore 85.9 2.6 5.7E-05 32.3 6.0 44 135-189 8-51 (184)
221 cd02977 ArsC_family Arsenate R 85.8 1.1 2.4E-05 31.9 3.5 21 122-142 2-22 (105)
222 cd03041 GST_N_2GST_N GST_N fam 85.5 3.4 7.3E-05 27.4 5.7 53 122-183 3-55 (77)
223 KOG2507 Ubiquitin regulatory p 85.0 6.2 0.00013 35.5 8.3 88 106-198 8-98 (506)
224 cd03035 ArsC_Yffb Arsenate Red 83.7 0.96 2.1E-05 32.5 2.4 21 122-142 2-22 (105)
225 cd03036 ArsC_like Arsenate Red 83.4 1.8 3.9E-05 31.3 3.7 32 122-162 2-33 (111)
226 cd03045 GST_N_Delta_Epsilon GS 83.2 3 6.4E-05 27.1 4.5 55 122-183 2-56 (74)
227 cd03068 PDI_b_ERp72 PDIb famil 82.4 15 0.00034 26.2 9.1 73 97-186 2-74 (107)
228 COG1999 Uncharacterized protei 82.2 10 0.00022 30.7 8.1 69 116-185 66-137 (207)
229 cd00570 GST_N_family Glutathio 82.0 2.7 5.8E-05 26.0 3.8 53 123-184 3-55 (71)
230 PF00837 T4_deiodinase: Iodoth 81.1 2.2 4.7E-05 35.4 3.8 42 116-158 101-142 (237)
231 cd03037 GST_N_GRX2 GST_N famil 80.9 4.9 0.00011 25.9 4.9 50 123-183 3-52 (71)
232 PF09673 TrbC_Ftype: Type-F co 80.9 13 0.00029 27.0 7.6 72 102-187 9-80 (113)
233 cd02990 UAS_FAF1 UAS family, F 80.2 23 0.0005 26.8 10.2 80 105-188 5-106 (136)
234 TIGR02742 TrbC_Ftype type-F co 80.1 13 0.00029 27.8 7.5 25 165-189 58-82 (130)
235 cd03066 PDI_b_Calsequestrin_mi 79.9 18 0.00039 25.3 8.9 73 98-187 3-75 (102)
236 cd03025 DsbA_FrnE_like DsbA fa 78.4 3.1 6.6E-05 32.4 3.8 31 166-196 157-187 (193)
237 cd03040 GST_N_mPGES2 GST_N fam 75.9 8.8 0.00019 25.1 5.0 53 121-185 2-54 (77)
238 PRK01655 spxA transcriptional 75.0 3.2 6.9E-05 31.0 2.9 22 121-142 2-23 (131)
239 TIGR01617 arsC_related transcr 73.7 5.6 0.00012 28.9 3.9 31 122-161 2-32 (117)
240 cd02974 AhpF_NTD_N Alkyl hydro 72.3 31 0.00067 24.2 9.2 74 103-198 7-81 (94)
241 PF07689 KaiB: KaiB domain; I 71.4 2.2 4.7E-05 29.5 1.1 53 125-183 4-56 (82)
242 COG4545 Glutaredoxin-related p 71.4 7.6 0.00016 26.5 3.7 60 122-191 5-76 (85)
243 cd03059 GST_N_SspA GST_N famil 71.4 6.9 0.00015 25.1 3.6 52 122-183 2-53 (73)
244 COG3019 Predicted metal-bindin 71.1 9.5 0.00021 29.1 4.6 47 118-177 25-71 (149)
245 cd02967 mauD Methylamine utili 70.5 5.9 0.00013 27.8 3.4 11 102-112 63-73 (114)
246 cd03072 PDI_b'_ERp44 PDIb' fam 68.6 0.74 1.6E-05 33.4 -1.8 44 18-63 39-85 (111)
247 cd03073 PDI_b'_ERp72_ERp57 PDI 68.5 1 2.2E-05 32.8 -1.1 43 17-61 42-87 (111)
248 PRK12559 transcriptional regul 68.4 5.6 0.00012 29.8 2.9 22 121-142 2-23 (131)
249 PF04592 SelP_N: Selenoprotein 68.2 9.8 0.00021 31.5 4.4 45 116-160 25-70 (238)
250 cd03056 GST_N_4 GST_N family, 67.2 17 0.00036 23.1 4.8 55 123-184 3-57 (73)
251 PF06053 DUF929: Domain of unk 66.2 56 0.0012 27.4 8.6 57 116-187 57-114 (249)
252 PF13417 GST_N_3: Glutathione 65.8 34 0.00074 22.2 7.4 54 124-189 2-55 (75)
253 cd03032 ArsC_Spx Arsenate Redu 65.8 6.9 0.00015 28.3 2.9 21 122-142 3-23 (115)
254 PRK15317 alkyl hydroperoxide r 65.7 47 0.001 30.4 8.9 73 103-197 7-80 (517)
255 cd03052 GST_N_GDAP1 GST_N fami 64.8 25 0.00054 23.0 5.3 59 122-189 2-60 (73)
256 PRK13344 spxA transcriptional 59.6 9.9 0.00021 28.5 2.8 21 121-141 2-22 (132)
257 cd03025 DsbA_FrnE_like DsbA fa 59.4 15 0.00033 28.4 4.0 27 121-147 3-29 (193)
258 PF00255 GSHPx: Glutathione pe 58.3 33 0.00071 24.8 5.3 68 116-186 20-91 (108)
259 cd03055 GST_N_Omega GST_N fami 58.2 28 0.00061 23.6 4.8 53 122-184 20-72 (89)
260 COG1651 DsbG Protein-disulfide 58.1 17 0.00037 29.5 4.2 32 117-148 84-115 (244)
261 TIGR03140 AhpF alkyl hydropero 57.4 82 0.0018 28.9 9.0 74 103-197 7-81 (515)
262 PF13462 Thioredoxin_4: Thiore 56.4 14 0.00031 27.5 3.3 23 167-191 125-147 (162)
263 cd03022 DsbA_HCCA_Iso DsbA fam 54.5 14 0.0003 28.5 3.0 22 166-189 155-176 (192)
264 COG3531 Predicted protein-disu 54.1 13 0.00029 30.1 2.8 30 167-196 163-192 (212)
265 COG0278 Glutaredoxin-related p 53.0 52 0.0011 23.7 5.4 63 116-190 13-81 (105)
266 PF09822 ABC_transp_aux: ABC-t 52.0 1E+02 0.0023 25.4 8.1 66 116-181 23-91 (271)
267 cd02983 P5_C P5 family, C-term 51.9 4 8.7E-05 30.4 -0.4 47 17-65 48-95 (130)
268 cd03023 DsbA_Com1_like DsbA fa 51.8 13 0.00029 27.2 2.4 19 166-184 117-135 (154)
269 PF04134 DUF393: Protein of un 49.8 39 0.00084 23.9 4.6 57 124-189 2-61 (114)
270 cd03033 ArsC_15kD Arsenate Red 49.4 20 0.00043 26.1 2.9 22 121-142 2-23 (113)
271 PRK13730 conjugal transfer pil 44.1 25 0.00055 28.6 3.0 30 166-196 150-179 (212)
272 COG0386 BtuE Glutathione perox 41.6 78 0.0017 24.7 5.2 42 116-160 24-65 (162)
273 KOG0855 Alkyl hydroperoxide re 41.3 1E+02 0.0022 24.5 5.8 79 116-194 89-190 (211)
274 PF11287 DUF3088: Protein of u 40.1 36 0.00079 24.9 3.0 52 128-186 23-76 (112)
275 KOG2792 Putative cytochrome C 38.4 83 0.0018 26.6 5.3 44 116-159 138-185 (280)
276 KOG0852 Alkyl hydroperoxide re 38.1 62 0.0013 25.8 4.2 61 116-177 32-116 (196)
277 cd03053 GST_N_Phi GST_N family 36.7 1.1E+02 0.0024 19.4 5.0 56 121-183 2-57 (76)
278 KOG1651 Glutathione peroxidase 36.3 1.1E+02 0.0023 24.2 5.2 43 116-160 33-75 (171)
279 KOG2244 Highly conserved prote 36.2 24 0.00053 33.0 2.0 75 102-187 101-186 (786)
280 cd03024 DsbA_FrnE DsbA family, 34.5 35 0.00077 26.5 2.5 20 165-184 162-181 (201)
281 TIGR00014 arsC arsenate reduct 33.4 34 0.00073 24.7 2.0 21 122-142 2-22 (114)
282 cd03034 ArsC_ArsC Arsenate Red 30.9 46 0.001 23.9 2.4 21 122-142 2-22 (112)
283 COG1393 ArsC Arsenate reductas 30.3 57 0.0012 23.9 2.8 25 121-145 3-27 (117)
284 TIGR02743 TraW type-F conjugat 28.4 1.3E+02 0.0029 24.3 4.9 39 139-190 158-196 (202)
285 COG0450 AhpC Peroxiredoxin [Po 25.7 73 0.0016 25.7 2.9 75 116-192 32-137 (194)
286 smart00053 DYNc Dynamin, GTPas 25.4 3.9E+02 0.0084 22.1 8.1 72 116-187 111-201 (240)
287 cd03021 DsbA_GSTK DsbA family, 25.2 64 0.0014 25.6 2.5 20 167-186 168-187 (209)
288 KOG4163 Prolyl-tRNA synthetase 24.3 67 0.0015 29.3 2.6 29 97-133 467-495 (551)
289 cd03074 PDI_b'_Calsequestrin_C 24.2 2.9E+02 0.0062 20.3 5.4 66 116-186 19-89 (120)
290 KOG2990 C2C2-type Zn-finger pr 23.4 52 0.0011 28.1 1.7 23 116-138 39-64 (317)
291 PTZ00194 60S ribosomal protein 23.3 92 0.002 23.8 2.9 27 166-196 32-58 (143)
292 COG1651 DsbG Protein-disulfide 22.8 71 0.0015 25.8 2.4 27 118-144 119-145 (244)
293 cd00862 ProRS_anticodon_zinc P 22.2 1E+02 0.0022 24.6 3.1 29 97-133 128-158 (202)
294 cd03049 GST_N_3 GST_N family, 21.7 2.2E+02 0.0048 17.9 4.6 59 123-190 3-61 (73)
295 PRK10026 arsenate reductase; P 21.4 1.1E+02 0.0023 23.3 2.9 22 121-142 4-25 (141)
296 PRK10853 putative reductase; P 21.2 97 0.0021 22.6 2.6 22 121-142 2-23 (118)
297 TIGR03439 methyl_EasF probable 20.8 4.6E+02 0.0099 22.7 7.1 60 116-184 75-134 (319)
298 PF05679 CHGN: Chondroitin N-a 20.8 5.4E+02 0.012 23.6 7.9 76 105-185 269-347 (499)
299 PF09180 ProRS-C_1: Prolyl-tRN 20.5 85 0.0018 20.5 2.0 20 104-131 2-21 (68)
300 PRK01191 rpl24p 50S ribosomal 20.4 1.3E+02 0.0028 22.3 3.1 28 165-196 30-57 (120)
301 cd03050 GST_N_Theta GST_N fami 20.2 2.4E+02 0.0053 17.8 5.8 54 123-183 3-56 (76)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.3e-24 Score=160.83 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=83.2
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
.+.+.++|++.+.+ ++.||+|+|||+||+||+.|.|.++++..++.+ .+.++++|. |++.+|+.+|+|.+
T Consensus 46 ~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdt----D~~~ela~~Y~I~a 115 (150)
T KOG0910|consen 46 NVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDT----DEHPELAEDYEISA 115 (150)
T ss_pred cccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEcc----ccccchHhhcceee
Confidence 33599999999987 899999999999999999999999999999976 799999999 99999999999999
Q ss_pred ccEEEEEECCcEEEEEeee
Q 028976 179 NFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 179 ~Ptl~~f~~G~~v~~i~~~ 197 (201)
+||+++|++|++++.+.|.
T Consensus 116 vPtvlvfknGe~~d~~vG~ 134 (150)
T KOG0910|consen 116 VPTVLVFKNGEKVDRFVGA 134 (150)
T ss_pred eeEEEEEECCEEeeeeccc
Confidence 9999999999999887764
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=2.9e-23 Score=152.81 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=78.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+... .+++|+|+|||+||+||+.|.|.++++++++++ .+.|++||+ |++++++++|+|.++||
T Consensus 1 ~~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDv----D~~~~la~~~~V~~iPT 71 (114)
T cd02954 1 SGWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDI----DEVPDFNKMYELYDPPT 71 (114)
T ss_pred CHHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEEC----CCCHHHHHHcCCCCCCE
Confidence 357889888743 688999999999999999999999999999876 589999999 99999999999999999
Q ss_pred EEEEECCcEEEEEee
Q 028976 182 FVLFLTFNEFILMAS 196 (201)
Q Consensus 182 l~~f~~G~~v~~i~~ 196 (201)
+++|++|+.+..+.|
T Consensus 72 f~~fk~G~~v~~~~G 86 (114)
T cd02954 72 VMFFFRNKHMKIDLG 86 (114)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999988766
No 3
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-22 Score=148.44 Aligned_cols=89 Identities=37% Similarity=0.535 Sum_probs=78.0
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++++.....+...+++++|+|||+|||||+.+.|.+.+++.+|++ +.|+++|+ |+..++++.++|+++||
T Consensus 6 ~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdv----de~~~~~~~~~V~~~PT 77 (106)
T KOG0907|consen 6 TVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDV----DELEEVAKEFNVKAMPT 77 (106)
T ss_pred ehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEec----ccCHhHHHhcCceEeeE
Confidence 44455555544444789999999999999999999999999999985 99999999 77999999999999999
Q ss_pred EEEEECCcEEEEEeeee
Q 028976 182 FVLFLTFNEFILMASVI 198 (201)
Q Consensus 182 l~~f~~G~~v~~i~~~l 198 (201)
|+||++|+++..+.|.-
T Consensus 78 f~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 78 FVFYKGGEEVDEVVGAN 94 (106)
T ss_pred EEEEECCEEEEEEecCC
Confidence 99999999999888754
No 4
>PHA02278 thioredoxin-like protein
Probab=99.88 E-value=3.8e-22 Score=144.90 Aligned_cols=90 Identities=10% Similarity=0.107 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+.++|++.+. ++++++|+|||+|||||+.+.|.++++++++.. ++.|+++|++.+....++++++|+|.++|
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iP 74 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTP 74 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCcccc
Confidence 36789999996 899999999999999999999999999987543 47789999922111137899999999999
Q ss_pred EEEEEECCcEEEEEeee
Q 028976 181 SFVLFLTFNEFILMASV 197 (201)
Q Consensus 181 tl~~f~~G~~v~~i~~~ 197 (201)
|+++|++|+++..+.|.
T Consensus 75 T~i~fk~G~~v~~~~G~ 91 (103)
T PHA02278 75 VLIGYKDGQLVKKYEDQ 91 (103)
T ss_pred EEEEEECCEEEEEEeCC
Confidence 99999999999988874
No 5
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.88 E-value=7.9e-22 Score=142.96 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=77.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+..+ .+++|+|+|||+||++|+.+.|.|++++++++ ++.|+++|++++ ++..+++++|+|.++||
T Consensus 2 ~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt 74 (103)
T cd02985 2 SVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDEN-DSTMELCRREKIIEVPH 74 (103)
T ss_pred CHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCCC-hHHHHHHHHcCCCcCCE
Confidence 678999999764 69999999999999999999999999999883 589999998322 23358999999999999
Q ss_pred EEEEECCcEEEEEeee
Q 028976 182 FVLFLTFNEFILMASV 197 (201)
Q Consensus 182 l~~f~~G~~v~~i~~~ 197 (201)
+++|++|+.+..+.|.
T Consensus 75 ~~~~~~G~~v~~~~G~ 90 (103)
T cd02985 75 FLFYKDGEKIHEEEGI 90 (103)
T ss_pred EEEEeCCeEEEEEeCC
Confidence 9999999998887763
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=2.2e-21 Score=143.20 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=77.3
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHH-HHcC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA-ERLK 175 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~-~~~~ 175 (201)
+.++ +.++|++++.. ..++++++|+||||||++|+.+.|.|+++++++++ .+.|++||+ +++.+++ ++|+
T Consensus 11 v~~l-~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~----d~~~~l~~~~~~ 81 (113)
T cd03006 11 VLDF-YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINC----WWPQGKCRKQKH 81 (113)
T ss_pred eEEe-chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEEC----CCChHHHHHhcC
Confidence 3444 88999987421 01899999999999999999999999999999976 599999999 8888999 5999
Q ss_pred CCcccEEEEEECCcEEEEEee
Q 028976 176 IKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
|.++||+++|++|++.....|
T Consensus 82 I~~~PTl~lf~~g~~~~~y~G 102 (113)
T cd03006 82 FFYFPVIHLYYRSRGPIEYKG 102 (113)
T ss_pred CcccCEEEEEECCccceEEeC
Confidence 999999999999987655444
No 7
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=5.4e-21 Score=138.24 Aligned_cols=88 Identities=24% Similarity=0.422 Sum_probs=79.5
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
.+.+.++|++++. ++++++|+|||+||++|+.+.|.+.++++++++ ..+.|+.+|+ | ..+++++|+|++
T Consensus 3 ~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~----d-~~~~~~~~~v~~ 71 (102)
T cd02948 3 EINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEA----D-TIDTLKRYRGKC 71 (102)
T ss_pred EccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeC----C-CHHHHHHcCCCc
Confidence 4578999999886 799999999999999999999999999998864 2588999999 7 678999999999
Q ss_pred ccEEEEEECCcEEEEEeee
Q 028976 179 NFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 179 ~Ptl~~f~~G~~v~~i~~~ 197 (201)
+||+++|++|+++..+.|.
T Consensus 72 ~Pt~~~~~~g~~~~~~~G~ 90 (102)
T cd02948 72 EPTFLFYKNGELVAVIRGA 90 (102)
T ss_pred CcEEEEEECCEEEEEEecC
Confidence 9999999999999988874
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=2.9e-21 Score=138.98 Aligned_cols=87 Identities=13% Similarity=0.217 Sum_probs=78.1
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
..+ +.++|++.+. .+++++|.|||+||++|+++.|.|+++++++++ .+.|+++|+ ++++.++++++|+
T Consensus 4 ~~l-~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~----~~~~~~~~~~~v~ 71 (101)
T cd03003 4 VTL-DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNC----GDDRMLCRSQGVN 71 (101)
T ss_pred EEc-CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeC----CccHHHHHHcCCC
Confidence 344 7899999986 679999999999999999999999999999875 699999999 8899999999999
Q ss_pred cccEEEEEECCcEEEEEee
Q 028976 178 VNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 178 ~~Ptl~~f~~G~~v~~i~~ 196 (201)
++||+++|++|+.+....|
T Consensus 72 ~~Pt~~~~~~g~~~~~~~G 90 (101)
T cd03003 72 SYPSLYVFPSGMNPEKYYG 90 (101)
T ss_pred ccCEEEEEcCCCCcccCCC
Confidence 9999999999987665554
No 9
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.4e-22 Score=177.80 Aligned_cols=154 Identities=21% Similarity=0.304 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCCCCCcccccccc--cccC---c------------cccccccc-ccc
Q 028976 17 NADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLAS--LKSN---H------------NLRHGKVK-GLI 78 (201)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~--~~~~---~------------~~~~~~~~-~~~ 78 (201)
..|++||+++.|+++|... ..+...+|| ++....| ++...++. .++. . .++.+.++ .+.
T Consensus 279 ~vAk~f~~~l~Fi~~d~e~-~~~~~~~~G-l~~~~~~-~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~k 355 (493)
T KOG0190|consen 279 EVAKKFKGKLRFILIDPES-FARVLEFFG-LEEEQLP-IRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLK 355 (493)
T ss_pred HHHHhcccceEEEEEChHH-hhHHHHhcC-cccccCC-eeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccc
Confidence 4688999999999995443 346888888 6666666 56555544 1332 1 12222333 444
Q ss_pred cccCCCCCCCCCCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEE
Q 028976 79 DATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~v 158 (201)
++..+++|+. .|+ .. ..+++|++++.+ .+|-|||+|||||||||+++.|+|++|++.+++ ..+++|+++
T Consensus 356 SqpiPe~~~~---~pV---kv-vVgknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKm 424 (493)
T KOG0190|consen 356 SQPIPEDNDR---SPV---KV-VVGKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKM 424 (493)
T ss_pred cCCCCccccc---CCe---EE-EeecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEe
Confidence 5566665542 233 23 388999999998 899999999999999999999999999999998 779999999
Q ss_pred eccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 159 NVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 159 d~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
|+|+| ++ ....|+++||+++|+.|.+
T Consensus 425 DaTaN-----d~-~~~~~~~fPTI~~~pag~k 450 (493)
T KOG0190|consen 425 DATAN-----DV-PSLKVDGFPTILFFPAGHK 450 (493)
T ss_pred ccccc-----cC-ccccccccceEEEecCCCC
Confidence 99887 33 4557888999999998874
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.85 E-value=1e-20 Score=136.53 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=77.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+.. .+++++|+|||+||++|+.+.|.|+++++++.+ .+.|+++|+ +++++++++|+|+++||
T Consensus 7 ~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~----~~~~~~~~~~~i~~~Pt 76 (104)
T cd03004 7 TPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDC----QKYESLCQQANIRAYPT 76 (104)
T ss_pred CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEEC----CchHHHHHHcCCCcccE
Confidence 78899999875 678999999999999999999999999999865 699999999 88999999999999999
Q ss_pred EEEEECC-cEEEEEeee
Q 028976 182 FVLFLTF-NEFILMASV 197 (201)
Q Consensus 182 l~~f~~G-~~v~~i~~~ 197 (201)
+++|++| +++....|.
T Consensus 77 ~~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 77 IRLYPGNASKYHSYNGW 93 (104)
T ss_pred EEEEcCCCCCceEccCC
Confidence 9999998 666666553
No 11
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.85 E-value=9.9e-21 Score=144.37 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=80.4
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
..+.+.++|++++..+ .+++|+|+|||+||+||+.+.|.|+++++++++ .+.|++||+ |+++++++.|+|+
T Consensus 6 ~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDV----De~~dla~~y~I~ 76 (142)
T PLN00410 6 PHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDI----TEVPDFNTMYELY 76 (142)
T ss_pred hhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEEC----CCCHHHHHHcCcc
Confidence 3567999999999754 789999999999999999999999999999976 588899999 9999999999999
Q ss_pred cccEEE-EEECCc-EEEEEee
Q 028976 178 VNFSFV-LFLTFN-EFILMAS 196 (201)
Q Consensus 178 ~~Ptl~-~f~~G~-~v~~i~~ 196 (201)
+.||++ ||++|+ .+....|
T Consensus 77 ~~~t~~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 77 DPCTVMFFFRNKHIMIDLGTG 97 (142)
T ss_pred CCCcEEEEEECCeEEEEEecc
Confidence 777666 999998 7777777
No 12
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=1.4e-20 Score=138.75 Aligned_cols=89 Identities=27% Similarity=0.423 Sum_probs=81.5
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+..+.+.++|++.+. ++++|+|+||+|||++|+.+.|.++++++++++ +.|++||+ ++.++++++|+|
T Consensus 6 v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~----~~~~~l~~~~~v 73 (113)
T cd02989 6 YREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNA----EKAPFLVEKLNI 73 (113)
T ss_pred eEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEc----ccCHHHHHHCCC
Confidence 456778899999997 678999999999999999999999999998864 89999999 999999999999
Q ss_pred CcccEEEEEECCcEEEEEeee
Q 028976 177 KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
.++||+++|++|+++..+.|.
T Consensus 74 ~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 74 KVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred ccCCEEEEEECCEEEEEEECc
Confidence 999999999999999887664
No 13
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.84 E-value=3.3e-20 Score=135.96 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
.++|++.+..+ .+++|+|+|+|+||+||+.+.|.++++++++++ .+.|++||+ |+.+++++.|+|.+.||+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDV----Dev~dva~~y~I~amPtf 72 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDV----DKVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEec----cccHHHHHhcCceeCcEE
Confidence 47889998875 799999999999999999999999999999964 399999999 999999999999999999
Q ss_pred EEEECCcEEE
Q 028976 183 VLFLTFNEFI 192 (201)
Q Consensus 183 ~~f~~G~~v~ 192 (201)
+||++|+-+.
T Consensus 73 vffkngkh~~ 82 (114)
T cd02986 73 IFFFNGQHMK 82 (114)
T ss_pred EEEECCcEEE
Confidence 9999998754
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.84 E-value=2.6e-20 Score=132.48 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=75.3
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
+|++.+..+ .+++++|+|||+||++|+++.|.++++++.+.+ .+.++++|+ +++++++++|+|.++||+++
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~----~~~~~l~~~~~i~~~Pt~~~ 72 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNC----DAQPQIAQQFGVQALPTVYL 72 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEec----cCCHHHHHHcCCCCCCEEEE
Confidence 577777653 588999999999999999999999999999875 599999999 89999999999999999999
Q ss_pred EECCcEEEEEeee
Q 028976 185 FLTFNEFILMASV 197 (201)
Q Consensus 185 f~~G~~v~~i~~~ 197 (201)
|++|+.+..+.|.
T Consensus 73 ~~~g~~~~~~~g~ 85 (96)
T cd02956 73 FAAGQPVDGFQGA 85 (96)
T ss_pred EeCCEEeeeecCC
Confidence 9999887777664
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=2.5e-20 Score=138.78 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=76.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChh--hH--hcHHHHHHHHHHh--CCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGS--CK--YIEQGFSKLCKGS--GDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~--C~--~l~p~l~~l~~~~--~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
+.++|++.+.. ++.++|++|||+||+| |+ ++.|.+.++++++ .+ ++.|++||+ |++++|+++|+
T Consensus 15 t~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~----d~~~~La~~~~ 84 (120)
T cd03065 15 NEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDS----KKDAKVAKKLG 84 (120)
T ss_pred ChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeC----CCCHHHHHHcC
Confidence 78999999986 7889999999999987 99 9999999999987 44 699999999 99999999999
Q ss_pred CCcccEEEEEECCcEEEEEee
Q 028976 176 IKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
|+++||+++|++|+.+. ..|
T Consensus 85 I~~iPTl~lfk~G~~v~-~~G 104 (120)
T cd03065 85 LDEEDSIYVFKDDEVIE-YDG 104 (120)
T ss_pred CccccEEEEEECCEEEE-eeC
Confidence 99999999999999776 555
No 16
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=6.2e-20 Score=131.09 Aligned_cols=87 Identities=29% Similarity=0.396 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+.++|++.+.. ++++++|.||++||++|+.+.|.|.++++.+++ ++.|+.+|+ +++++++++|+|.++|
T Consensus 4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~----~~~~~l~~~~~v~~~P 73 (103)
T PF00085_consen 4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDC----DENKELCKKYGVKSVP 73 (103)
T ss_dssp ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEET----TTSHHHHHHTTCSSSS
T ss_pred CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhh----hccchhhhccCCCCCC
Confidence 488999999984 589999999999999999999999999999976 799999999 8899999999999999
Q ss_pred EEEEEECCcEEEEEeee
Q 028976 181 SFVLFLTFNEFILMASV 197 (201)
Q Consensus 181 tl~~f~~G~~v~~i~~~ 197 (201)
|+++|++|+++..+.|.
T Consensus 74 t~~~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 74 TIIFFKNGKEVKRYNGP 90 (103)
T ss_dssp EEEEEETTEEEEEEESS
T ss_pred EEEEEECCcEEEEEECC
Confidence 99999999998877664
No 17
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.83 E-value=6e-20 Score=135.14 Aligned_cols=90 Identities=24% Similarity=0.396 Sum_probs=78.1
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+.++ +.++|.+.+.... .+++|+|+||+|||++|+.+.|.++++++++++ +.|++||+ +++ +++++|+|
T Consensus 6 v~~i-~~~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~----~~~-~l~~~~~i 74 (113)
T cd02957 6 VREI-SSKEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINA----EKA-FLVNYLDI 74 (113)
T ss_pred EEEE-cHHHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEc----hhh-HHHHhcCC
Confidence 3455 4599999987421 248999999999999999999999999999864 89999999 777 99999999
Q ss_pred CcccEEEEEECCcEEEEEeee
Q 028976 177 KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
.++||+++|++|+++..+.|.
T Consensus 75 ~~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 75 KVLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CcCCEEEEEECCEEEEEEecH
Confidence 999999999999999887763
No 18
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=8.3e-20 Score=132.96 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=74.7
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCC---CCCEEEEEEeccCCcchhHHHHHH
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ---EAPVIFLKHNVIDEYDEQSEVAER 173 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~---~~~v~~~~vd~~~~~d~~~~l~~~ 173 (201)
+.++ +.++|++.+. .+++++|.||||||++|+++.|.|+++++.+++. .+++.++++|+ +++.+++++
T Consensus 3 v~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~----d~~~~l~~~ 73 (108)
T cd02996 3 IVSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC----DKESDIADR 73 (108)
T ss_pred eEEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC----CCCHHHHHh
Confidence 3344 7899999885 6889999999999999999999999999886431 13599999999 888999999
Q ss_pred cCCCcccEEEEEECCcEE
Q 028976 174 LKIKVNFSFVLFLTFNEF 191 (201)
Q Consensus 174 ~~V~~~Ptl~~f~~G~~v 191 (201)
|+|+++||+++|++|+..
T Consensus 74 ~~v~~~Ptl~~~~~g~~~ 91 (108)
T cd02996 74 YRINKYPTLKLFRNGMMM 91 (108)
T ss_pred CCCCcCCEEEEEeCCcCc
Confidence 999999999999999843
No 19
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.82 E-value=1.8e-19 Score=139.45 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=80.8
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+.++ +.++|++.+... .+++++|+||||||++|+++.|.|+++++++++ .++.|++||+ +++++++++|+|
T Consensus 30 v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDv----d~~~~la~~~~V 100 (152)
T cd02962 30 IKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDI----GRFPNVAEKFRV 100 (152)
T ss_pred cEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEEC----CCCHHHHHHcCc
Confidence 3344 678999988643 578999999999999999999999999999864 3699999999 999999999999
Q ss_pred Cc------ccEEEEEECCcEEEEEee
Q 028976 177 KV------NFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 177 ~~------~Ptl~~f~~G~~v~~i~~ 196 (201)
.+ +||+++|++|+++..+.|
T Consensus 101 ~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 101 STSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred eecCCcCCCCEEEEEECCEEEEEEec
Confidence 98 999999999999998887
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.82 E-value=6.4e-20 Score=132.40 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc-hhHHHHHHcCCCcccE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLKIKVNFS 181 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d-~~~~l~~~~~V~~~Pt 181 (201)
..++.+.+... ++++|+|+|||+||++|+.+.|.|+++++++++ +.++++|. + ++++++++|+|.++||
T Consensus 6 ~~~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~----~~~~~~l~~~~~V~~~PT 75 (100)
T cd02999 6 LNIALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEE----SSIKPSLLSRYGVVGFPT 75 (100)
T ss_pred hhHHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEEC----CCCCHHHHHhcCCeecCE
Confidence 35666666654 899999999999999999999999999999864 78999998 6 7889999999999999
Q ss_pred EEEEECCcEEEEEee
Q 028976 182 FVLFLTFNEFILMAS 196 (201)
Q Consensus 182 l~~f~~G~~v~~i~~ 196 (201)
+++|++| ++....|
T Consensus 76 ~~lf~~g-~~~~~~G 89 (100)
T cd02999 76 ILLFNST-PRVRYNG 89 (100)
T ss_pred EEEEcCC-ceeEecC
Confidence 9999999 6665555
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.81 E-value=2.9e-19 Score=127.39 Aligned_cols=89 Identities=34% Similarity=0.475 Sum_probs=80.8
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+.++.+.++|++++. .+++++|+||++||++|+.+.|.|+++++++.+ +.|+.+|+ ++..+++++|+|
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~----~~~~~~~~~~~v 69 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDV----DELSEVAEKENI 69 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEEC----cchHHHHHHCCC
Confidence 456778899999886 789999999999999999999999999998754 89999999 888999999999
Q ss_pred CcccEEEEEECCcEEEEEeee
Q 028976 177 KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
.++||+++|++|+.+..+.|.
T Consensus 70 ~~~Pt~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 70 TSMPTFKVFKNGSVVDTLLGA 90 (98)
T ss_pred ceeeEEEEEeCCeEEEEEeCC
Confidence 999999999999998887774
No 22
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.81 E-value=1.3e-19 Score=132.65 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=79.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCC--ChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTS--CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~W--C~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~ 179 (201)
+.++|++.+. .+..++|.|||+| |++|+.+.|.|+++++++++ .+.|+++|+ +++++++.+|+|+++
T Consensus 16 ~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdi----d~~~~la~~f~V~sI 84 (111)
T cd02965 16 DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGR----ADEQALAARFGVLRT 84 (111)
T ss_pred ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEEC----CCCHHHHHHcCCCcC
Confidence 7889998885 7999999999997 99999999999999999976 689999999 889999999999999
Q ss_pred cEEEEEECCcEEEEEeee
Q 028976 180 FSFVLFLTFNEFILMASV 197 (201)
Q Consensus 180 Ptl~~f~~G~~v~~i~~~ 197 (201)
||+++|++|+.+..+.|.
T Consensus 85 PTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 85 PALLFFRDGRYVGVLAGI 102 (111)
T ss_pred CEEEEEECCEEEEEEeCc
Confidence 999999999999888874
No 23
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.81 E-value=3.3e-19 Score=126.74 Aligned_cols=87 Identities=25% Similarity=0.434 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+..+ .+++|+|+||++||++|+.+.|.|+++++++.. ++.++++|+ ++.++++++|+|.++||
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~----~~~~~~~~~~~i~~~Pt 71 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEA----EELPEISEKFEITAVPT 71 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEcc----ccCHHHHHhcCCccccE
Confidence 467899999864 379999999999999999999999999998633 699999999 88999999999999999
Q ss_pred EEEEECCcEEEEEeee
Q 028976 182 FVLFLTFNEFILMASV 197 (201)
Q Consensus 182 l~~f~~G~~v~~i~~~ 197 (201)
+++|++|+++..+.|.
T Consensus 72 ~~~~~~g~~~~~~~g~ 87 (97)
T cd02984 72 FVFFRNGTIVDRVSGA 87 (97)
T ss_pred EEEEECCEEEEEEeCC
Confidence 9999999988877764
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=3.7e-19 Score=127.37 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=76.7
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+. ++ +++|.|||+||++|+.+.|.|.++++++++...++.++++|+ +++..++++|+|.++||
T Consensus 6 ~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 6 TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC----TQHRELCSEFQVRGYPT 76 (102)
T ss_pred CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC----CCChhhHhhcCCCcCCE
Confidence 7889999996 34 599999999999999999999999999865334699999999 88889999999999999
Q ss_pred EEEEECCcEEEEEeee
Q 028976 182 FVLFLTFNEFILMASV 197 (201)
Q Consensus 182 l~~f~~G~~v~~i~~~ 197 (201)
+++|++|+++....|.
T Consensus 77 ~~~~~~g~~~~~~~G~ 92 (102)
T cd03005 77 LLLFKDGEKVDKYKGT 92 (102)
T ss_pred EEEEeCCCeeeEeeCC
Confidence 9999999887766664
No 25
>PRK09381 trxA thioredoxin; Provisional
Probab=99.81 E-value=3.7e-19 Score=129.56 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=80.2
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
|.++ +.++|++.+.. .+++++|+||++||++|+.+.|.|+++++++++ ++.++.+|+ +..+.++++|+|
T Consensus 5 v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~----~~~~~~~~~~~v 73 (109)
T PRK09381 5 IIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI----DQNPGTAPKYGI 73 (109)
T ss_pred ceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEEC----CCChhHHHhCCC
Confidence 4455 77899987754 689999999999999999999999999999876 699999999 888999999999
Q ss_pred CcccEEEEEECCcEEEEEeee
Q 028976 177 KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
.++||+++|++|+.+..+.|.
T Consensus 74 ~~~Pt~~~~~~G~~~~~~~G~ 94 (109)
T PRK09381 74 RGIPTLLLFKNGEVAATKVGA 94 (109)
T ss_pred CcCCEEEEEeCCeEEEEecCC
Confidence 999999999999888777664
No 26
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=151.23 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=82.4
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+.++ |..||++.+..+. ..+||||+||||||++|+.+.|.++++..++++ .+.+++||| |+++.++.+|||
T Consensus 25 I~dv-T~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~----D~~p~vAaqfgi 95 (304)
T COG3118 25 IKDV-TEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNC----DAEPMVAAQFGV 95 (304)
T ss_pred ceec-hHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecC----CcchhHHHHhCc
Confidence 4455 8999998876542 566999999999999999999999999999987 799999999 999999999999
Q ss_pred CcccEEEEEECCcEEEEEeee
Q 028976 177 KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
+++||++.|++|+.|.-..|.
T Consensus 96 qsIPtV~af~dGqpVdgF~G~ 116 (304)
T COG3118 96 QSIPTVYAFKDGQPVDGFQGA 116 (304)
T ss_pred CcCCeEEEeeCCcCccccCCC
Confidence 999999999999998876664
No 27
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.80 E-value=5.1e-19 Score=140.04 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=80.4
Q ss_pred cceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHc
Q 028976 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (201)
Q Consensus 95 ~~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~ 174 (201)
..+.++.+.++|.+.+..+. .+.+|+|+||++||++|+.+.|.|++++.+++. +.|++||+ ++. +++.+|
T Consensus 62 g~v~ei~~~~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~----d~~-~l~~~f 131 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRA----SAT-GASDEF 131 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEec----cch-hhHHhC
Confidence 34567766699999987521 235999999999999999999999999999864 99999999 766 899999
Q ss_pred CCCcccEEEEEECCcEEEEEeee
Q 028976 175 KIKVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 175 ~V~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
+|.++||+++|++|+.+..+.|+
T Consensus 132 ~v~~vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 132 DTDALPALLVYKGGELIGNFVRV 154 (175)
T ss_pred CCCCCCEEEEEECCEEEEEEech
Confidence 99999999999999999887765
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=3.3e-19 Score=130.89 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=76.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+.. ...+++++|+||||||++|+.+.|.|+++++++++ .++.+++||+ +..+.++++|+|.++||
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~----d~~~~l~~~~~V~~~Pt 82 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNA----GHERRLARKLGAHSVPA 82 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEec----cccHHHHHHcCCccCCE
Confidence 77888865532 11689999999999999999999999999999974 2589999999 88899999999999999
Q ss_pred EEEEECCcEEEEEee
Q 028976 182 FVLFLTFNEFILMAS 196 (201)
Q Consensus 182 l~~f~~G~~v~~i~~ 196 (201)
+++|++|+.+..+.|
T Consensus 83 ~~i~~~g~~~~~~~G 97 (111)
T cd02963 83 IVGIINGQVTFYHDS 97 (111)
T ss_pred EEEEECCEEEEEecC
Confidence 999999988777666
No 29
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.6e-19 Score=146.93 Aligned_cols=90 Identities=31% Similarity=0.448 Sum_probs=84.0
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
|..+.++.+|+..+..+ .++.|+|+|+|+|||||++++|.|..++.+|++ .+|++||+ |+....+..+||
T Consensus 3 Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdV----d~c~~taa~~gV 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDV----DECRGTAATNGV 72 (288)
T ss_pred eEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeH----HHhhchhhhcCc
Confidence 45678999999999876 789999999999999999999999999999976 89999999 999999999999
Q ss_pred CcccEEEEEECCcEEEEEee
Q 028976 177 KVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~ 196 (201)
.+.|||++|++|.++..+.|
T Consensus 73 ~amPTFiff~ng~kid~~qG 92 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVKIDQIQG 92 (288)
T ss_pred ccCceEEEEecCeEeeeecC
Confidence 99999999999999988765
No 30
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.80 E-value=4.6e-19 Score=128.58 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=72.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcch--hHHHHHHcCCCcc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE--QSEVAERLKIKVN 179 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~--~~~l~~~~~V~~~ 179 (201)
+.++|++.+.. .+++++|.|||+||++|+.+.|.|+++++.+.+ .+.++.+|+ +. +.+++++|+|+++
T Consensus 6 ~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~----~~~~~~~~~~~~~i~~~ 75 (109)
T cd03002 6 TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDC----DEDKNKPLCGKYGVQGF 75 (109)
T ss_pred chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEec----CccccHHHHHHcCCCcC
Confidence 78899999976 688999999999999999999999999999865 689999999 55 8899999999999
Q ss_pred cEEEEEECCcE
Q 028976 180 FSFVLFLTFNE 190 (201)
Q Consensus 180 Ptl~~f~~G~~ 190 (201)
||+++|++|++
T Consensus 76 Pt~~~~~~~~~ 86 (109)
T cd03002 76 PTLKVFRPPKK 86 (109)
T ss_pred CEEEEEeCCCc
Confidence 99999999974
No 31
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.79 E-value=1e-18 Score=125.47 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=72.3
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+.++ +.++|++.+. +. ++|+|||+||++|+++.|.|+++++.+++ .++.++++|+ ++++.++++|+|
T Consensus 3 v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~----~~~~~~~~~~~i 69 (101)
T cd02994 3 VVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDV----TQEPGLSGRFFV 69 (101)
T ss_pred eEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEc----cCCHhHHHHcCC
Confidence 3455 7889998773 34 78999999999999999999999987653 3699999999 888999999999
Q ss_pred CcccEEEEEECCcEEEEEee
Q 028976 177 KVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~ 196 (201)
.++||+++|++|+ +....|
T Consensus 70 ~~~Pt~~~~~~g~-~~~~~G 88 (101)
T cd02994 70 TALPTIYHAKDGV-FRRYQG 88 (101)
T ss_pred cccCEEEEeCCCC-EEEecC
Confidence 9999999999886 344444
No 32
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.79 E-value=7.6e-19 Score=129.69 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=75.0
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
.++ +.++|++.+.. .+++|+|+|||+||++|+.+.|.|+++++++++..+.+.|+.+|++. +.+.+++++|+|+
T Consensus 4 ~~l-~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~~i~ 77 (114)
T cd02992 4 IVL-DAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--EENVALCRDFGVT 77 (114)
T ss_pred EEC-CHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--hhhHHHHHhCCCC
Confidence 344 88999999986 56899999999999999999999999999887544469999999832 4577899999999
Q ss_pred cccEEEEEECCcE
Q 028976 178 VNFSFVLFLTFNE 190 (201)
Q Consensus 178 ~~Ptl~~f~~G~~ 190 (201)
++||+++|++|..
T Consensus 78 ~~Pt~~lf~~~~~ 90 (114)
T cd02992 78 GYPTLRYFPPFSK 90 (114)
T ss_pred CCCEEEEECCCCc
Confidence 9999999998873
No 33
>PRK10996 thioredoxin 2; Provisional
Probab=99.79 E-value=1.6e-18 Score=132.27 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=78.3
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++++. ++++|+|+|||+||++|+.+.|.|.++++++.+ ++.++++|+ +++++++++|+|.++||
T Consensus 41 ~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~----~~~~~l~~~~~V~~~Pt 109 (139)
T PRK10996 41 TGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNT----EAERELSARFRIRSIPT 109 (139)
T ss_pred CHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeC----CCCHHHHHhcCCCccCE
Confidence 7889999886 799999999999999999999999999998865 699999999 88999999999999999
Q ss_pred EEEEECCcEEEEEeee
Q 028976 182 FVLFLTFNEFILMASV 197 (201)
Q Consensus 182 l~~f~~G~~v~~i~~~ 197 (201)
+++|++|+.+..+.|.
T Consensus 110 lii~~~G~~v~~~~G~ 125 (139)
T PRK10996 110 IMIFKNGQVVDMLNGA 125 (139)
T ss_pred EEEEECCEEEEEEcCC
Confidence 9999999988877664
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=2.6e-18 Score=123.23 Aligned_cols=87 Identities=22% Similarity=0.328 Sum_probs=76.3
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcch--hHHHHHHcCCCcc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE--QSEVAERLKIKVN 179 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~--~~~l~~~~~V~~~ 179 (201)
+.++|++.+. ++++++|.|||+||++|+++.|.+.++++.+.+ ...+.++.+|+ +. +..++++|+|+++
T Consensus 6 ~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 6 TDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDC----TKPEHDALKEEYNVKGF 76 (104)
T ss_pred chHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEEC----CCCccHHHHHhCCCccc
Confidence 6779999887 677999999999999999999999999998874 34689999999 55 8899999999999
Q ss_pred cEEEEEECCcEEEEEeee
Q 028976 180 FSFVLFLTFNEFILMASV 197 (201)
Q Consensus 180 Ptl~~f~~G~~v~~i~~~ 197 (201)
||+++|++|+.+....|.
T Consensus 77 Pt~~~~~~g~~~~~~~g~ 94 (104)
T cd02997 77 PTFKYFENGKFVEKYEGE 94 (104)
T ss_pred cEEEEEeCCCeeEEeCCC
Confidence 999999999877666553
No 35
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.76 E-value=3e-18 Score=123.80 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHH---HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l---~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
++|++++. ++++++|.|||+||++|+.+.|.+ +++.+.+.+ ++.++.+|++.+.+...+++++|+|.++|
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~P 74 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPP 74 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCC
Confidence 56777776 799999999999999999999987 678887764 69999999954433478999999999999
Q ss_pred EEEEEE--CCcEEEEEeee
Q 028976 181 SFVLFL--TFNEFILMASV 197 (201)
Q Consensus 181 tl~~f~--~G~~v~~i~~~ 197 (201)
|+++|+ +|+.+..+.|.
T Consensus 75 ti~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 75 TYLFYGPGGEPEPLRLPGF 93 (104)
T ss_pred EEEEECCCCCCCCcccccc
Confidence 999999 57777666664
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=6.7e-18 Score=121.03 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=71.9
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+.. .+++++|.||++||++|+++.|.|.++++++.+ .+.++.+|+ +++.+++++|+|+++||
T Consensus 6 ~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~----~~~~~~~~~~~i~~~P~ 75 (103)
T cd03001 6 TDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDA----DVHQSLAQQYGVRGFPT 75 (103)
T ss_pred CHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEEC----cchHHHHHHCCCCccCE
Confidence 88999999875 677899999999999999999999999998865 699999999 89999999999999999
Q ss_pred EEEEECCc
Q 028976 182 FVLFLTFN 189 (201)
Q Consensus 182 l~~f~~G~ 189 (201)
+++|++|+
T Consensus 76 ~~~~~~~~ 83 (103)
T cd03001 76 IKVFGAGK 83 (103)
T ss_pred EEEECCCC
Confidence 99999883
No 37
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=5.9e-18 Score=138.61 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=78.9
Q ss_pred eeecCCHHHHHHHHHhhc-cCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 97 VREFKTDAEFFKILEKSK-ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~-~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
+.++ +.++|++.+.... ..+++++|+||||||++|+++.|.|+++++++++ .+.++++|+ +++++++++|+
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~----~~~~~l~~~~~ 103 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDA----TRALNLAKRFA 103 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecC----cccHHHHHHcC
Confidence 3344 8999999886431 1368999999999999999999999999999876 599999999 88899999999
Q ss_pred CCcccEEEEEECCcEEEEEee
Q 028976 176 IKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
|.++||+++|++|+.+....|
T Consensus 104 I~~~PTl~~f~~G~~v~~~~G 124 (224)
T PTZ00443 104 IKGYPTLLLFDKGKMYQYEGG 124 (224)
T ss_pred CCcCCEEEEEECCEEEEeeCC
Confidence 999999999999987665544
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.76 E-value=7e-18 Score=120.88 Aligned_cols=79 Identities=18% Similarity=0.362 Sum_probs=71.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
++++|++.+.. .+++++|+||++||++|+.+.|.|+++++.+++ ..++.++++|+ +++ +++..+++.++||
T Consensus 6 ~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~-~~~~~~~~~~~Pt 76 (104)
T cd02995 6 VGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDA----TAN-DVPSEFVVDGFPT 76 (104)
T ss_pred chhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeC----cch-hhhhhccCCCCCE
Confidence 78899999875 578999999999999999999999999999865 34799999999 665 6889999999999
Q ss_pred EEEEECCc
Q 028976 182 FVLFLTFN 189 (201)
Q Consensus 182 l~~f~~G~ 189 (201)
+++|++|+
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02995 77 ILFFPAGD 84 (104)
T ss_pred EEEEcCCC
Confidence 99999987
No 39
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=154.21 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=79.0
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
|..+ +.++|++.+. .+..++|.|||||||||++++|.+++++..+.+....+.+++||+ .++.++|.+|+|
T Consensus 27 Vl~L-t~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa----t~~~~~~~~y~v 97 (493)
T KOG0190|consen 27 VLVL-TKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA----TEESDLASKYEV 97 (493)
T ss_pred eEEE-ecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec----chhhhhHhhhcC
Confidence 4444 9999999998 899999999999999999999999999999988667899999999 777999999999
Q ss_pred CcccEEEEEECCcE
Q 028976 177 KVNFSFVLFLTFNE 190 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~ 190 (201)
+++||+.+|++|+.
T Consensus 98 ~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRS 111 (493)
T ss_pred CCCCeEEEEecCCc
Confidence 99999999999986
No 40
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.75 E-value=7.1e-18 Score=122.01 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
+++|++.. ++++++|.|||+||++|+.+.|.|+++++++++...++.++++|+ +..++++++|+|.++||+
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA----TAYSSIASEFGVRGYPTI 76 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEEC----ccCHhHHhhcCCccccEE
Confidence 47787742 678999999999999999999999999999865334699999999 888899999999999999
Q ss_pred EEEECCcE
Q 028976 183 VLFLTFNE 190 (201)
Q Consensus 183 ~~f~~G~~ 190 (201)
++|++|..
T Consensus 77 ~l~~~~~~ 84 (104)
T cd03000 77 KLLKGDLA 84 (104)
T ss_pred EEEcCCCc
Confidence 99987643
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.75 E-value=2.1e-17 Score=117.33 Aligned_cols=86 Identities=31% Similarity=0.466 Sum_probs=76.8
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|.+.+.. .+++++|.||++||++|+.+.|.+.++++++.+ ++.|+.+|+ +.+.+++++|+|.++||
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~----~~~~~~~~~~~v~~~P~ 71 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNV----DENPDIAAKYGIRSIPT 71 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEEC----CCCHHHHHHcCCCcCCE
Confidence 56789998875 578999999999999999999999999988864 699999999 88899999999999999
Q ss_pred EEEEECCcEEEEEeee
Q 028976 182 FVLFLTFNEFILMASV 197 (201)
Q Consensus 182 l~~f~~G~~v~~i~~~ 197 (201)
+++|++|+.+....|.
T Consensus 72 ~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 72 LLLFKNGKEVDRSVGA 87 (101)
T ss_pred EEEEeCCcEeeeecCC
Confidence 9999999887666554
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.74 E-value=1.5e-17 Score=121.43 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=71.5
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcch-hHHHHH-Hc
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-QSEVAE-RL 174 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~-~~~l~~-~~ 174 (201)
|.++ +.++|+..+.. ...+++++|.||++||++|+++.|.|.++++.+++ .++.++.||+ +. ...++. .|
T Consensus 3 v~~~-~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~----d~~~~~~~~~~~ 74 (109)
T cd02993 3 VVTL-SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNA----DGEQREFAKEEL 74 (109)
T ss_pred ceec-cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEEC----CccchhhHHhhc
Confidence 3444 78899988753 11689999999999999999999999999999874 3599999999 65 467776 59
Q ss_pred CCCcccEEEEEECCcE
Q 028976 175 KIKVNFSFVLFLTFNE 190 (201)
Q Consensus 175 ~V~~~Ptl~~f~~G~~ 190 (201)
+|+++||+++|++|+.
T Consensus 75 ~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 75 QLKSFPTILFFPKNSR 90 (109)
T ss_pred CCCcCCEEEEEcCCCC
Confidence 9999999999998753
No 43
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.74 E-value=1.7e-17 Score=118.33 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=76.6
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
++++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.+ ..++.++.+|+ +++++++++|+|.++|+
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-~~~~~~~~~d~----~~~~~~~~~~~i~~~P~ 72 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-DPDIVLAKVDA----TAEKDLASRFGVSGFPT 72 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-CCceEEEEEEc----cchHHHHHhCCCCcCCE
Confidence 6788999886 799999999999999999999999999998865 33699999999 99999999999999999
Q ss_pred EEEEECCcEEEEEee
Q 028976 182 FVLFLTFNEFILMAS 196 (201)
Q Consensus 182 l~~f~~G~~v~~i~~ 196 (201)
+++|++|+.+....|
T Consensus 73 ~~~~~~~~~~~~~~g 87 (102)
T TIGR01126 73 IKFFPKGKKPVDYEG 87 (102)
T ss_pred EEEecCCCcceeecC
Confidence 999999986555554
No 44
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.74 E-value=1.3e-17 Score=127.79 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=72.6
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
...+|++++. .+++++|+|||+||++|+.+.|.+.++++++.+ .+.|+.||+.. +...+++++|+|.++||
T Consensus 9 ~~~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~--~~~~~~~~~~~V~~iPt 79 (142)
T cd02950 9 SSTPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDN--PKWLPEIDRYRVDGIPH 79 (142)
T ss_pred ccCCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCC--cccHHHHHHcCCCCCCE
Confidence 3456777775 799999999999999999999999999999865 57888888722 33468899999999999
Q ss_pred EEEEE-CCcEEEEEeee
Q 028976 182 FVLFL-TFNEFILMASV 197 (201)
Q Consensus 182 l~~f~-~G~~v~~i~~~ 197 (201)
+++|+ +|+.+..+.|.
T Consensus 80 ~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 80 FVFLDREGNEEGQSIGL 96 (142)
T ss_pred EEEECCCCCEEEEEeCC
Confidence 99996 78888777774
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=2.1e-17 Score=118.45 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=71.8
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcch-hHHHHHHcCCCccc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-QSEVAERLKIKVNF 180 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~-~~~l~~~~~V~~~P 180 (201)
+.++|++.+.. .+++++|.||++||++|+.+.|.|.++++.++. ..++.++.+|+ +. ++.++++|+|.++|
T Consensus 6 ~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 6 TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDA----DEANKDLAKKYGVSGFP 77 (105)
T ss_pred chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEEC----CCcchhhHHhCCCCCcC
Confidence 77899998765 567999999999999999999999999999863 34699999999 77 89999999999999
Q ss_pred EEEEEECCc
Q 028976 181 SFVLFLTFN 189 (201)
Q Consensus 181 tl~~f~~G~ 189 (201)
++++|++|+
T Consensus 78 ~~~~~~~~~ 86 (105)
T cd02998 78 TLKFFPKGS 86 (105)
T ss_pred EEEEEeCCC
Confidence 999999874
No 46
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.73 E-value=5.8e-17 Score=115.83 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=72.4
Q ss_pred HHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEE
Q 028976 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFL 186 (201)
Q Consensus 107 ~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~ 186 (201)
+..+.. .+++|+|.||++||++|+.+.|.++++.+++++ ++.++++|+ +++++++++++|.++||+++|+
T Consensus 6 ~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~----d~~~~l~~~~~v~~vPt~~i~~ 75 (97)
T cd02949 6 RKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDI----DEDQEIAEAAGIMGTPTVQFFK 75 (97)
T ss_pred HHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEEC----CCCHHHHHHCCCeeccEEEEEE
Confidence 444554 799999999999999999999999999999875 699999999 8899999999999999999999
Q ss_pred CCcEEEEEeee
Q 028976 187 TFNEFILMASV 197 (201)
Q Consensus 187 ~G~~v~~i~~~ 197 (201)
+|+.+..+.|.
T Consensus 76 ~g~~v~~~~g~ 86 (97)
T cd02949 76 DKELVKEISGV 86 (97)
T ss_pred CCeEEEEEeCC
Confidence 99888777664
No 47
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.72 E-value=4.1e-17 Score=121.24 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHhhccCCCEEEEEEEC-------CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc---chhHH
Q 028976 100 FKTDAEFFKILEKSKETGSLVVVDFYR-------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSE 169 (201)
Q Consensus 100 i~~~~~f~~~l~~~~~~~k~vlV~Fya-------~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~---d~~~~ 169 (201)
+.+.++|.+.+... ++++|+|+||| +||++|+.+.|.++++.+++++ ++.|++||+.... +.+.+
T Consensus 6 ~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 6 VRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred ccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchh
Confidence 35889999999853 57999999999 9999999999999999999875 5999999993321 23569
Q ss_pred HHHHcCCC-cccEEEEEECCcEE
Q 028976 170 VAERLKIK-VNFSFVLFLTFNEF 191 (201)
Q Consensus 170 l~~~~~V~-~~Ptl~~f~~G~~v 191 (201)
++.+++|. ++||+++|++|+.+
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred hHhccCcccCCCEEEEEcCCcee
Confidence 99999999 99999999888654
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=6.4e-17 Score=129.78 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=75.9
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 96 ~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
.+.++ +.++|...+..+. .+.+|+|+||++||++|+.|.|.|++++.++++ +.|++||+ +.. ..+|+
T Consensus 83 ~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~a----d~~---~~~~~ 149 (192)
T cd02988 83 EVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIS----TQC---IPNYP 149 (192)
T ss_pred eEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEh----HHh---HhhCC
Confidence 45566 7889998776531 246999999999999999999999999999864 99999999 543 58999
Q ss_pred CCcccEEEEEECCcEEEEEeee
Q 028976 176 IKVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
|.++||+++|++|+.+..+.|+
T Consensus 150 i~~lPTlliyk~G~~v~~ivG~ 171 (192)
T cd02988 150 DKNLPTILVYRNGDIVKQFIGL 171 (192)
T ss_pred CCCCCEEEEEECCEEEEEEeCc
Confidence 9999999999999999888774
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.70 E-value=1.1e-16 Score=118.01 Aligned_cols=80 Identities=20% Similarity=0.195 Sum_probs=68.2
Q ss_pred HHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEE
Q 028976 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185 (201)
Q Consensus 106 f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f 185 (201)
|.+.+. ++..++|.|||+||++|+.+.|.++++++.+ + .+.+..+|+ ++.++++++|+|.++||+++|
T Consensus 15 ~~~~l~----~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~----d~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 15 FFKEMK----NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDF----DEDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred HHHHhC----CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeC----CcCHHHHHHcCCCcCCEEEEE
Confidence 555554 6788999999999999999999999999876 3 599999999 889999999999999999999
Q ss_pred ECCcEEE--EEeee
Q 028976 186 LTFNEFI--LMASV 197 (201)
Q Consensus 186 ~~G~~v~--~i~~~ 197 (201)
++|++.. .+.|+
T Consensus 83 ~~g~~~~~~~~~G~ 96 (113)
T cd02975 83 QDGGKDGGIRYYGL 96 (113)
T ss_pred eCCeecceEEEEec
Confidence 9876543 44453
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.69 E-value=1.6e-16 Score=112.02 Aligned_cols=86 Identities=22% Similarity=0.396 Sum_probs=74.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|.+.+. ++++++|.||++||++|+.+.|.|.++++.+.. ..++.++.+|+ +++..++++|+|.++||
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~----~~~~~~~~~~~i~~~Pt 74 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDC----TANNDLCSEYGVRGYPT 74 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeec----cchHHHHHhCCCCCCCE
Confidence 6789999998 566999999999999999999999999998841 23799999999 88999999999999999
Q ss_pred EEEEECC-cEEEEEee
Q 028976 182 FVLFLTF-NEFILMAS 196 (201)
Q Consensus 182 l~~f~~G-~~v~~i~~ 196 (201)
+++|++| ..+....|
T Consensus 75 ~~~~~~~~~~~~~~~g 90 (101)
T cd02961 75 IKLFPNGSKEPVKYEG 90 (101)
T ss_pred EEEEcCCCcccccCCC
Confidence 9999988 44444443
No 51
>PTZ00102 disulphide isomerase; Provisional
Probab=99.69 E-value=5.3e-17 Score=145.68 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=108.2
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCCCCCccccccccccc--Ccc----ccccccc----ccccccCCC--
Q 028976 17 NADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLASLKS--NHN----LRHGKVK----GLIDATQGE-- 84 (201)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~--~~~----~~~~~~~----~~~~~~~~~-- 84 (201)
.+|+++|+++.|+..+....+.|...-++ .+ ..|...+.+.+. ++ ... .....+. .+.......
T Consensus 271 ~~A~~~~~~~~f~~vd~~~~~~~~~~~~g-i~--~~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~ 346 (477)
T PTZ00102 271 KVARKLREKYAFVWLDTEQFGSHAKEHLL-IE--EFPGLAYQSPAG-RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSI 346 (477)
T ss_pred HHHHhccCceEEEEEechhcchhHHHhcC-cc--cCceEEEEcCCc-ccCCCccccccCCHHHHHHHHHHHhCCCCCccc
Confidence 46788999999999988855434444455 22 367655443221 11 000 0000110 111111000
Q ss_pred -CCCCCCCCCccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC
Q 028976 85 -SDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE 163 (201)
Q Consensus 85 -~~~~~~~~~~~~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~ 163 (201)
++... ......+..+ ++++|++.+.+ ++++|+|.||||||++|+.+.|.|+++++.+++ ...+.++++|+
T Consensus 347 ~se~~p-~~~~~~v~~l-~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~--- 417 (477)
T PTZ00102 347 KSEPIP-EEQDGPVKVV-VGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNG--- 417 (477)
T ss_pred ccCCCC-CCCCCCeEEe-cccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEEC---
Confidence 00000 0011223444 78999999765 789999999999999999999999999998876 45799999999
Q ss_pred cchhHHHHHHcCCCcccEEEEEECCcEEE-EEee
Q 028976 164 YDEQSEVAERLKIKVNFSFVLFLTFNEFI-LMAS 196 (201)
Q Consensus 164 ~d~~~~l~~~~~V~~~Ptl~~f~~G~~v~-~i~~ 196 (201)
+.+..++++|+|+++||+++|++|+++. ...|
T Consensus 418 -~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 418 -TANETPLEEFSWSAFPTILFVKAGERTPIPYEG 450 (477)
T ss_pred -CCCccchhcCCCcccCeEEEEECCCcceeEecC
Confidence 7777889999999999999999988753 3444
No 52
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.67 E-value=4.3e-16 Score=116.13 Aligned_cols=88 Identities=9% Similarity=0.224 Sum_probs=68.6
Q ss_pred HHHHHHHHhhccCC-CEEEEEEECCCChhhHhcHHHHH---HHHHHhCCCCCCEEEEEEeccCCc---------chhHHH
Q 028976 104 AEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVIDEY---------DEQSEV 170 (201)
Q Consensus 104 ~~f~~~l~~~~~~~-k~vlV~Fya~WC~~C~~l~p~l~---~l~~~~~~~~~~v~~~~vd~~~~~---------d~~~~l 170 (201)
+.+++++. ++ ++|+|+|||+||++|+.+.|.+. ++.+.+.+ ++.++.+|+.++. ....++
T Consensus 4 ~~~~~a~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l 76 (125)
T cd02951 4 EDLAEAAA----DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKEL 76 (125)
T ss_pred HHHHHHHH----cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHH
Confidence 45566665 78 99999999999999999999874 56666654 6899999983210 024789
Q ss_pred HHHcCCCcccEEEEEECC--cEEEEEeeee
Q 028976 171 AERLKIKVNFSFVLFLTF--NEFILMASVI 198 (201)
Q Consensus 171 ~~~~~V~~~Ptl~~f~~G--~~v~~i~~~l 198 (201)
+.+|+|.++||++||+++ +.+..+.|..
T Consensus 77 ~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~ 106 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPEGGKEIARLPGYL 106 (125)
T ss_pred HHHcCCccccEEEEEcCCCCceeEEecCCC
Confidence 999999999999999974 6666777753
No 53
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.66 E-value=9.6e-16 Score=114.52 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=70.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-------chhHHHHHHc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------DEQSEVAERL 174 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-------d~~~~l~~~~ 174 (201)
+.++|.+.+. +++.++|.||++||++|+.+.|.|.+++++. ++.++.+|+..+. ++..++.++|
T Consensus 12 t~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 12 TVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred CHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 7889999997 7899999999999999999999999999873 3668888873211 1234666776
Q ss_pred CC----CcccEEEEEECCcEEEEEeee
Q 028976 175 KI----KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 175 ~V----~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
++ .++||+++|++|+++..+.|.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCC
Confidence 64 559999999999999988773
No 54
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.66 E-value=5.1e-16 Score=114.68 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEEC--CCCh---hhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc-hhHHHHHHc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYR--TSCG---SCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERL 174 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya--~WC~---~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d-~~~~l~~~~ 174 (201)
.+.++|++.|. +++.+||.||| |||+ +|+.++|.+.+.+. .+.+++||+++..+ ++.+||++|
T Consensus 6 L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 6 LDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh
Confidence 38999999997 78999999999 9999 77777777765543 38999999944221 468899999
Q ss_pred CCC--cccEEEEEECCc
Q 028976 175 KIK--VNFSFVLFLTFN 189 (201)
Q Consensus 175 ~V~--~~Ptl~~f~~G~ 189 (201)
+|+ ++||+++|++|+
T Consensus 75 ~I~~~gyPTl~lF~~g~ 91 (116)
T cd03007 75 KLDKESYPVIYLFHGGD 91 (116)
T ss_pred CCCcCCCCEEEEEeCCC
Confidence 999 999999999985
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.66 E-value=5.9e-16 Score=137.71 Aligned_cols=87 Identities=18% Similarity=0.385 Sum_probs=77.6
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++++. ++++++|.||||||++|+++.|.|.++++.+.+...++.|++||| +++.++|++|+|.++||
T Consensus 7 ~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 7 TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA----TEEKDLAQKYGVSGYPT 78 (462)
T ss_pred CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC----CCcHHHHHhCCCccccE
Confidence 8899999997 788999999999999999999999999998875445699999999 88899999999999999
Q ss_pred EEEEECCcE-EEEEee
Q 028976 182 FVLFLTFNE-FILMAS 196 (201)
Q Consensus 182 l~~f~~G~~-v~~i~~ 196 (201)
+++|++|+. +....|
T Consensus 79 ~~~~~~g~~~~~~~~g 94 (462)
T TIGR01130 79 LKIFRNGEDSVSDYNG 94 (462)
T ss_pred EEEEeCCccceeEecC
Confidence 999999987 544444
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.65 E-value=1e-15 Score=137.43 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+.++|++.+. +++.++|.|||+||++|+++.|.|.++++.+.+...++.+++||+ +++.++|++|+|.++||
T Consensus 38 ~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~----~~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 38 TDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA----TEEMELAQEFGVRGYPT 109 (477)
T ss_pred chhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC----CCCHHHHHhcCCCcccE
Confidence 8899999987 688999999999999999999999999988865455799999999 88899999999999999
Q ss_pred EEEEECCcEE
Q 028976 182 FVLFLTFNEF 191 (201)
Q Consensus 182 l~~f~~G~~v 191 (201)
+++|++|+.+
T Consensus 110 ~~~~~~g~~~ 119 (477)
T PTZ00102 110 IKFFNKGNPV 119 (477)
T ss_pred EEEEECCceE
Confidence 9999999876
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.63 E-value=2.3e-15 Score=104.00 Aligned_cols=81 Identities=31% Similarity=0.498 Sum_probs=71.5
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
+|+..+. .+++++|.||++||++|+.+.+.+.++.+..+ ++.++.+|+ +...++++.|++.++||+++
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~----~~~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP----KVKFVKVDV----DENPELAEEYGVRSIPTFLF 69 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEEC----CCChhHHHhcCcccccEEEE
Confidence 5677776 56999999999999999999999999988732 699999999 88889999999999999999
Q ss_pred EECCcEEEEEeee
Q 028976 185 FLTFNEFILMASV 197 (201)
Q Consensus 185 f~~G~~v~~i~~~ 197 (201)
|++|+.+..+.|.
T Consensus 70 ~~~g~~~~~~~g~ 82 (93)
T cd02947 70 FKNGKEVDRVVGA 82 (93)
T ss_pred EECCEEEEEEecC
Confidence 9999877776664
No 58
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.63 E-value=4.5e-16 Score=115.46 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=63.1
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc--ccEE
Q 028976 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV--NFSF 182 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~--~Ptl 182 (201)
+|++++..+..++++|+|+|||+||++|+.+.|.+.+....... . ..|+.+|++. +.. .+.+.|++.+ +||+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~--~~~-~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLED--DEE-PKDEEFSPDGGYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecC--CCC-chhhhcccCCCccceE
Confidence 46777777766899999999999999999999999887765433 2 3355555522 221 3457899987 9999
Q ss_pred EEEE-CCcEEEEEee
Q 028976 183 VLFL-TFNEFILMAS 196 (201)
Q Consensus 183 ~~f~-~G~~v~~i~~ 196 (201)
+||. +|+.+..+.+
T Consensus 81 ~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 81 LFLDPSGDVHPEIIN 95 (117)
T ss_pred EEECCCCCCchhhcc
Confidence 9997 7777654443
No 59
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.62 E-value=3.5e-16 Score=130.80 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=69.0
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNEFIL 193 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~v~~ 193 (201)
.+..++|+||||||+||+++.|+|.+.+-++++.+..+.+.++|+ ...+.++.+|+|+++||+++|++|..+..
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDa----T~f~aiAnefgiqGYPTIk~~kgd~a~dY 115 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDA----TRFPAIANEFGIQGYPTIKFFKGDHAIDY 115 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccc----ccchhhHhhhccCCCceEEEecCCeeeec
Confidence 689999999999999999999999999999988778899999999 88899999999999999999999876653
No 60
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.62 E-value=2.4e-15 Score=134.43 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=72.1
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhH-HH-HHH
Q 028976 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQS-EV-AER 173 (201)
Q Consensus 96 ~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~-~l-~~~ 173 (201)
.|.++ +.++|++.+.. ...+++|||+||||||++|+.|.|.|+++++++++ .++.|++||+ |.+. ++ +++
T Consensus 352 ~Vv~L-~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~--~~v~~~kVdv----D~~~~~~~~~~ 423 (463)
T TIGR00424 352 NVVSL-SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG--SGVKVAKFRA----DGDQKEFAKQE 423 (463)
T ss_pred CeEEC-CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCcEEEEEEC----CCCccHHHHHH
Confidence 45555 88899999851 11799999999999999999999999999999875 2589999999 5432 44 478
Q ss_pred cCCCcccEEEEEECCcE
Q 028976 174 LKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 174 ~~V~~~Ptl~~f~~G~~ 190 (201)
|+|.++||+++|++|+.
T Consensus 424 ~~I~~~PTii~Fk~g~~ 440 (463)
T TIGR00424 424 LQLGSFPTILFFPKHSS 440 (463)
T ss_pred cCCCccceEEEEECCCC
Confidence 99999999999999863
No 61
>PLN02309 5'-adenylylsulfate reductase
Probab=99.62 E-value=3.2e-15 Score=133.59 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=74.7
Q ss_pred cceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc-hhHHHHH-
Q 028976 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAE- 172 (201)
Q Consensus 95 ~~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d-~~~~l~~- 172 (201)
..+..+ +.++|++.+... ..++++||+||||||++|+.|.|.|+++++++.+ .++.|+++|+ + .+.+++.
T Consensus 345 ~~Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~----d~~~~~la~~ 416 (457)
T PLN02309 345 QNVVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRA----DGDQKEFAKQ 416 (457)
T ss_pred CCcEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEEC----CCcchHHHHh
Confidence 345555 889999987521 1799999999999999999999999999999864 3699999999 7 6678886
Q ss_pred HcCCCcccEEEEEECCcE
Q 028976 173 RLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 173 ~~~V~~~Ptl~~f~~G~~ 190 (201)
+|+|.++||+++|++|..
T Consensus 417 ~~~I~~~PTil~f~~g~~ 434 (457)
T PLN02309 417 ELQLGSFPTILLFPKNSS 434 (457)
T ss_pred hCCCceeeEEEEEeCCCC
Confidence 699999999999998864
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=99.62 E-value=2.4e-15 Score=121.54 Aligned_cols=78 Identities=10% Similarity=0.000 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+.++|++.+.. +.+.++++|||+||++|++|.|.+.++++++++ +.|++||. | |+|.++|
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~----d--------~~V~~vP 64 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNL----A--------DANNEYG 64 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEcc----c--------cCcccce
Confidence 578999999863 348889999999999999999999999999875 99999998 4 9999999
Q ss_pred EEEEEECCcEEEEEeee
Q 028976 181 SFVLFLTFNEFILMASV 197 (201)
Q Consensus 181 tl~~f~~G~~v~~i~~~ 197 (201)
||++|++|+++..+.|.
T Consensus 65 tfv~~~~g~~i~r~~G~ 81 (204)
T PTZ00062 65 VFEFYQNSQLINSLEGC 81 (204)
T ss_pred EEEEEECCEEEeeeeCC
Confidence 99999999999988763
No 63
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.59 E-value=4.6e-15 Score=136.58 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=79.5
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHH---HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHc
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l---~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~ 174 (201)
..+.+.++|++.+..++.++|+|+|+|||+||++|+.+.+.. +++.++++ ++.++++|++++++++.+++++|
T Consensus 455 ~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 455 QRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred eecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHHHc
Confidence 355688999999987776899999999999999999999974 66777665 48999999988766788999999
Q ss_pred CCCcccEEEEEE-CCcEE--EEEee
Q 028976 175 KIKVNFSFVLFL-TFNEF--ILMAS 196 (201)
Q Consensus 175 ~V~~~Ptl~~f~-~G~~v--~~i~~ 196 (201)
+|.++||+++|+ +|+++ ..+.|
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G 555 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTG 555 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccC
Confidence 999999999998 66663 34554
No 64
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.50 E-value=2.3e-13 Score=96.29 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=60.8
Q ss_pred CCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc---------------------chhHHHHHHcC
Q 028976 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---------------------DEQSEVAERLK 175 (201)
Q Consensus 117 ~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~---------------------d~~~~l~~~~~ 175 (201)
||+++|+|||+||++|+...|.+.++.+++++ ..++.++.|..+... +....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999995 557999988875421 33567899999
Q ss_pred CCcccEEEEEECCcEE
Q 028976 176 IKVNFSFVLFLTFNEF 191 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v 191 (201)
|.++|++++++..++|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999987654
No 65
>PHA02125 thioredoxin-like protein
Probab=99.49 E-value=1.1e-13 Score=94.65 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=51.8
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcEEEEEeee
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
++.|||+||++|+.+.|.|+++. +.++++|. ++..+++++|+|.++||++ +|+.+....|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~----~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDT----DEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeC----CCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 68999999999999999997652 45788998 8889999999999999998 57666666664
No 66
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.49 E-value=1.4e-13 Score=98.66 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=64.6
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC--cccEEEEEEC--CcEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK--VNFSFVLFLT--FNEF 191 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~--~~Ptl~~f~~--G~~v 191 (201)
.++++++.||++||++|+.+.|.++++++++++ .+.|+.+|+ ++++.+++.|+|. ++|++++++. |++.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~----~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~ 83 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDA----DDFGRHLEYFGLKEEDLPVIAIINLSDGKKY 83 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEch----HhhHHHHHHcCCChhhCCEEEEEeccccccc
Confidence 478999999999999999999999999999976 699999999 8899999999999 9999999998 6554
Q ss_pred E
Q 028976 192 I 192 (201)
Q Consensus 192 ~ 192 (201)
.
T Consensus 84 ~ 84 (103)
T cd02982 84 L 84 (103)
T ss_pred C
Confidence 4
No 67
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.49 E-value=2.8e-13 Score=101.49 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-H--HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHH-------
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE------- 172 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l--~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~------- 172 (201)
.+.++.+.. ++|+|+|+|||+||++|+.|.+. | .++.+.+.+ +++++++|. ++.+++++
T Consensus 5 ~eal~~Ak~----~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~----~~~~~~~~~~~~~~~ 73 (124)
T cd02955 5 EEAFEKARR----EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDR----EERPDVDKIYMNAAQ 73 (124)
T ss_pred HHHHHHHHH----cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeC----CcCcHHHHHHHHHHH
Confidence 445555555 89999999999999999999884 3 456666644 699999999 55555543
Q ss_pred -HcCCCcccEEEEEEC-CcEEEEE
Q 028976 173 -RLKIKVNFSFVLFLT-FNEFILM 194 (201)
Q Consensus 173 -~~~V~~~Ptl~~f~~-G~~v~~i 194 (201)
.|++.++||++|+.. |+.+..-
T Consensus 74 ~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 74 AMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HhcCCCCCCEEEEECCCCCEEeee
Confidence 469999999999985 5554433
No 68
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.49 E-value=2e-13 Score=102.38 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc--------------------chhHHHHHHcC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------------------DEQSEVAERLK 175 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~--------------------d~~~~l~~~~~ 175 (201)
.+++|||+||++||++|+.+.|.+.++.+++.+...++.++.++++.+. +....+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 6899999999999999999999999999888653346777777763321 12357889999
Q ss_pred CCcccEEEEEECCcEE
Q 028976 176 IKVNFSFVLFLTFNEF 191 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v 191 (201)
|.++|++++++.++++
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 9999999999844443
No 69
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.48 E-value=2.4e-13 Score=104.54 Aligned_cols=77 Identities=9% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCC-----CCCEEEEEEeccCCc--------------------c-hhHH
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNVIDEY--------------------D-EQSE 169 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~-----~~~v~~~~vd~~~~~--------------------d-~~~~ 169 (201)
++++|+|+|||+||++|+++.|.|.++.+++.+. ..++.++.|+.+.+. + ....
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 7899999999999999999999999998877542 235888888864321 1 1236
Q ss_pred HHHHcCCCcccEEEEEECCcEEE
Q 028976 170 VAERLKIKVNFSFVLFLTFNEFI 192 (201)
Q Consensus 170 l~~~~~V~~~Ptl~~f~~G~~v~ 192 (201)
+++.|+|.++||+++++..+++.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 88999999999999999655554
No 70
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.47 E-value=2.8e-13 Score=101.98 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-------------------c--hhHHHHHHc
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------------------D--EQSEVAERL 174 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-------------------d--~~~~l~~~~ 174 (201)
.++.++|+||++||++|+.+.|.+.++.+++++...++.++.|++..+. + ....+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 7899999999999999999999999999988753235777777763321 0 124677889
Q ss_pred CCCcccEEEEEECCcEE
Q 028976 175 KIKVNFSFVLFLTFNEF 191 (201)
Q Consensus 175 ~V~~~Ptl~~f~~G~~v 191 (201)
+|.++||++++++++++
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 99999999999855444
No 71
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.5e-14 Score=128.17 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=78.9
Q ss_pred cceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHc
Q 028976 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (201)
Q Consensus 95 ~~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~ 174 (201)
+.+..+ +.++|..++.. +.+..+|+||++|||+|++.+|.|+++++.+..+..-+.++.|||.+ ++|..+|++|
T Consensus 39 D~ii~L-d~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--~~N~~lCRef 112 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--EENVKLCREF 112 (606)
T ss_pred CCeEEe-ehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--hhhhhhHhhc
Confidence 334454 89999999986 55789999999999999999999999999999888889999999966 7899999999
Q ss_pred CCCcccEEEEEECC
Q 028976 175 KIKVNFSFVLFLTF 188 (201)
Q Consensus 175 ~V~~~Ptl~~f~~G 188 (201)
+|.++|++.+|+.+
T Consensus 113 ~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPD 126 (606)
T ss_pred CCCCCceeeecCCc
Confidence 99999999999965
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.46 E-value=3.5e-13 Score=92.61 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=54.5
Q ss_pred EEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 120 vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
.+..||++||++|+.+.|.+++++++++. .+.++++|+ ++.++++++|+|.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~----~~~~~~~~~~~v~~vPt~~~--~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINV----MENPQKAMEYGIMAVPAIVI--NGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeC----ccCHHHHHHcCCccCCEEEE--CCE
Confidence 35679999999999999999999998865 599999999 88899999999999999986 554
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.46 E-value=3.1e-13 Score=110.13 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCCEEEEEEEC---CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcEEE
Q 028976 116 TGSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNEFI 192 (201)
Q Consensus 116 ~~k~vlV~Fya---~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~v~ 192 (201)
.+...++.|++ +||++|+.+.|.++++++++.+ -.+.++.+|. ++.++++++|+|.++||+++|++|+++.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~----~~~~~l~~~~~V~~~Pt~~~f~~g~~~~ 91 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT----PEDKEEAEKYGVERVPTTIILEEGKDGG 91 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC----cccHHHHHHcCCCccCEEEEEeCCeeeE
Confidence 45555666888 9999999999999999998853 2366777777 7899999999999999999999999874
Q ss_pred -EEeee
Q 028976 193 -LMASV 197 (201)
Q Consensus 193 -~i~~~ 197 (201)
...|+
T Consensus 92 ~~~~G~ 97 (215)
T TIGR02187 92 IRYTGI 97 (215)
T ss_pred EEEeec
Confidence 66664
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=1.9e-13 Score=121.69 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.++++|++.+.+ .++.++|.||||||++|+.+.|.++++++.+.+...++.|+++|+ +.+ ++.. ++|.++|
T Consensus 351 l~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~----~~n-~~~~-~~i~~~P 421 (462)
T TIGR01130 351 LVGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDA----TAN-DVPP-FEVEGFP 421 (462)
T ss_pred eeCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEEC----CCC-ccCC-CCccccC
Confidence 378999999876 799999999999999999999999999999876333799999999 443 3434 9999999
Q ss_pred EEEEEECCcEE
Q 028976 181 SFVLFLTFNEF 191 (201)
Q Consensus 181 tl~~f~~G~~v 191 (201)
|+++|++|++.
T Consensus 422 t~~~~~~~~~~ 432 (462)
T TIGR01130 422 TIKFVPAGKKS 432 (462)
T ss_pred EEEEEeCCCCc
Confidence 99999998763
No 75
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.42 E-value=4.2e-13 Score=97.63 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=59.6
Q ss_pred cCCCEEEEEEECCCChhhHhcHHHHHH---HHHHhCCCCCCEEEEEEeccCCc----------------chhHHHHHHcC
Q 028976 115 ETGSLVVVDFYRTSCGSCKYIEQGFSK---LCKGSGDQEAPVIFLKHNVIDEY----------------DEQSEVAERLK 175 (201)
Q Consensus 115 ~~~k~vlV~Fya~WC~~C~~l~p~l~~---l~~~~~~~~~~v~~~~vd~~~~~----------------d~~~~l~~~~~ 175 (201)
.++++++|.||+|||+.|+.+.+.+.+ +...+.+ ++.++.+++.... ..+.++++.|+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 489999999999999999999999875 4444433 5888888874321 12357999999
Q ss_pred CCcccEEEEEE-CCcEEEEEeeee
Q 028976 176 IKVNFSFVLFL-TFNEFILMASVI 198 (201)
Q Consensus 176 V~~~Ptl~~f~-~G~~v~~i~~~l 198 (201)
|+++||+++++ +|+.+..+.|.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS-
T ss_pred CCccCEEEEEcCCCCEEEEecCCC
Confidence 99999999997 688888888764
No 76
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.42 E-value=1.7e-12 Score=109.32 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-------chhHHHHHHcCCCcccEEEEEEC-
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------DEQSEVAERLKIKVNFSFVLFLT- 187 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-------d~~~~l~~~~~V~~~Ptl~~f~~- 187 (201)
.++++||+|||+||++|+.+.|.+.+++++++ +.++.|+++... +.+..++++|+|.++||++++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 68999999999999999999999999999984 555566652210 12457899999999999999997
Q ss_pred CcEEEEE
Q 028976 188 FNEFILM 194 (201)
Q Consensus 188 G~~v~~i 194 (201)
|+.+..+
T Consensus 240 ~~~v~~v 246 (271)
T TIGR02740 240 PNQFTPI 246 (271)
T ss_pred CCEEEEE
Confidence 6776543
No 77
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.41 E-value=1e-12 Score=90.04 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=49.8
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNEF 191 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~v 191 (201)
-|+||++||++|+.+.|.++++.++++. .+.++++|- .+.+.+|+|.++||+++ +|+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~~-------~~~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVTD-------MNEILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeCC-------HHHHHHcCCCcCCEEEE--CCEEE
Confidence 3789999999999999999999999875 588877762 23478899999999999 77665
No 78
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.40 E-value=5.3e-13 Score=111.81 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=72.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCC--CCCEEEEEEeccCCcchhHHHHHHcCCCcc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ--EAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~--~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~ 179 (201)
+-+|++.++. ...+|+|.|||+||+..+.++|+|++.++.+++. ++.+++++||| +.+..|+.+|.|..+
T Consensus 2 t~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc----d~e~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 2 TSENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC----DKEDDIADKYHINKY 73 (375)
T ss_pred ccccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc----chhhHHhhhhccccC
Confidence 4467788887 7899999999999999999999999998876542 25799999999 999999999999999
Q ss_pred cEEEEEECCcEE
Q 028976 180 FSFVLFLTFNEF 191 (201)
Q Consensus 180 Ptl~~f~~G~~v 191 (201)
||+.+|++|.-.
T Consensus 74 PTlKvfrnG~~~ 85 (375)
T KOG0912|consen 74 PTLKVFRNGEMM 85 (375)
T ss_pred ceeeeeeccchh
Confidence 999999999643
No 79
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8e-13 Score=116.36 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
..+|...+.. .+++++|+||||||++|+.+.|.|.+++..+.+ .+.++.||+ +++.++|+.|+|.++||+
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~----~~~~~~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDC----DEHKDLCEKYGIQGFPTL 105 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCc----hhhHHHHHhcCCccCcEE
Confidence 4555555544 899999999999999999999999999999876 799999999 999999999999999999
Q ss_pred EEEECCcEEE
Q 028976 183 VLFLTFNEFI 192 (201)
Q Consensus 183 ~~f~~G~~v~ 192 (201)
.+|.+|.+..
T Consensus 106 ~~f~~~~~~~ 115 (383)
T KOG0191|consen 106 KVFRPGKKPI 115 (383)
T ss_pred EEEcCCCcee
Confidence 9999994333
No 80
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.37 E-value=2.4e-12 Score=85.52 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=50.2
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
++.||++||++|+.+.+.++++++... ++.+..+|+ +++++++++|+|.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~----~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDA----AEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEc----ccCHhHHHHcCCcccCEEEE
Confidence 567999999999999999999987643 599999999 88889999999999999865
No 81
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.36 E-value=4.8e-12 Score=103.07 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
.+..+++.||++||++|+.+.|.+++++.+.. ++.+.++|. ++.++++++|+|.++||++++++|..
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~----~~~~~~~~~~~V~~vPtl~i~~~~~~ 198 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEA----NENPDLAEKYGVMSVPKIVINKGVEE 198 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeC----CCCHHHHHHhCCccCCEEEEecCCEE
Confidence 34445555999999999999999999998753 599999999 89999999999999999999987753
No 82
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.36 E-value=3.6e-12 Score=94.88 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=59.9
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-------------------cchhHHHHHHcCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKI 176 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-------------------~d~~~~l~~~~~V 176 (201)
.+++++|+||++||++|+.+.|.++++.+++ ++.++.|+..+. .|.+..+++.|+|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 6899999999999999999999999998765 266776664221 1556678999999
Q ss_pred CcccEEEEEE-CCcEEEEEeee
Q 028976 177 KVNFSFVLFL-TFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~-~G~~v~~i~~~ 197 (201)
.++|+.++++ +|+.+....|.
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred CCCCeEEEECCCceEEEEEecc
Confidence 9999777765 66666666664
No 83
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.33 E-value=4.4e-12 Score=114.69 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=76.9
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-HHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
.+.+.++.++.+..+ .+|+|+|||||+||-.||.+++. +.+.....+ ..+++.+++|+|+|+.++.++.++|++-
T Consensus 458 ~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 458 PISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred ccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 444666889998865 55699999999999999999997 433322222 2369999999999999999999999999
Q ss_pred cccEEEEEE-CCcEEEEEeeee
Q 028976 178 VNFSFVLFL-TFNEFILMASVI 198 (201)
Q Consensus 178 ~~Ptl~~f~-~G~~v~~i~~~l 198 (201)
+.|++++|+ +|++...+.|.+
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~ 555 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFL 555 (569)
T ss_pred CCCEEEEECCCCCcCcCCccee
Confidence 999999999 677766565543
No 84
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.32 E-value=5.6e-12 Score=114.31 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC------------------------CcchhHHHH
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID------------------------EYDEQSEVA 171 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~------------------------~~d~~~~l~ 171 (201)
++++|||+|||+||++|+.+.|.++++.+++++ .++.++.|.... ..|.+..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~--~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF--SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc--CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 689999999999999999999999999998863 246666554310 015567899
Q ss_pred HHcCCCcccEEEEEE-CCcEEEEEeee
Q 028976 172 ERLKIKVNFSFVLFL-TFNEFILMASV 197 (201)
Q Consensus 172 ~~~~V~~~Ptl~~f~-~G~~v~~i~~~ 197 (201)
+.|+|.++||++++. +|+.+..+.|.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~ 159 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGS 159 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCC
Confidence 999999999997775 67766676664
No 85
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.32 E-value=8.5e-12 Score=96.69 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc--------chhHHHH-HHc---CCCcccEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------DEQSEVA-ERL---KIKVNFSFV 183 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~--------d~~~~l~-~~~---~V~~~Ptl~ 183 (201)
.++..+|+|||+||++|+++.|.+++++++++ +.++.|++++.. +...+.. ..| +|.++||++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~ 123 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATF 123 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEE
Confidence 46677999999999999999999999999874 445555542210 1122333 445 899999999
Q ss_pred EEEC-CcEEE-EEeee
Q 028976 184 LFLT-FNEFI-LMASV 197 (201)
Q Consensus 184 ~f~~-G~~v~-~i~~~ 197 (201)
+++. |+.+. ...|.
T Consensus 124 LID~~G~~i~~~~~G~ 139 (153)
T TIGR02738 124 LVNVNTRKAYPVLQGA 139 (153)
T ss_pred EEeCCCCEEEEEeecc
Confidence 9985 55533 45553
No 86
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.31 E-value=4.9e-12 Score=95.20 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=62.0
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHH---HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l---~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+|++.+..++.++|+|+|+|+++||++|+.|...+ .++.+...+ ++..+.++.... +.+.. ..+ .++|
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~t-d~~~~---~~g-~~vP 81 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETT-DKNLS---PDG-QYVP 81 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccC-CCCcC---ccC-cccC
Confidence 478888888888999999999999999999999974 445555533 577777776211 11211 233 6899
Q ss_pred EEEEEE-CCcEEEEEeee
Q 028976 181 SFVLFL-TFNEFILMASV 197 (201)
Q Consensus 181 tl~~f~-~G~~v~~i~~~ 197 (201)
|++|++ +|+.+..+.|.
T Consensus 82 tivFld~~g~vi~~i~Gy 99 (130)
T cd02960 82 RIMFVDPSLTVRADITGR 99 (130)
T ss_pred eEEEECCCCCCccccccc
Confidence 999998 55666666664
No 87
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.30 E-value=1e-11 Score=98.97 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-------------------chhHHHHHHcCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------------------DEQSEVAERLKI 176 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-------------------d~~~~l~~~~~V 176 (201)
.+++++|+|||+||++|+++.|.+.++.++ ++.++.|+..++. |....+++.|+|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 689999999999999999999999988642 4777888763321 223346678999
Q ss_pred CcccEEEEEE-CCcEEEEEeee
Q 028976 177 KVNFSFVLFL-TFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~-~G~~v~~i~~~ 197 (201)
.++|+.++++ +|+.+....|.
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~ 162 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGD 162 (185)
T ss_pred CcCCeEEEECCCceEEEEEecC
Confidence 9999877777 66555555553
No 88
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.30 E-value=4.8e-12 Score=87.76 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=55.7
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHH---HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l---~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
+|++++..+..++++++|+|+|+||++|+.+...+ .++.+.+.+ +++++++|. +...... .+...++|+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~----~~~~~~~-~~~~~~~P~ 76 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDV----DDEDPNA-QFDRQGYPT 76 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEET----TTHHHHH-HHHHCSSSE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEc----CCCChhH-HhCCccCCE
Confidence 46777777777999999999999999999999986 455554443 699999998 3333222 222277999
Q ss_pred EEEEEC
Q 028976 182 FVLFLT 187 (201)
Q Consensus 182 l~~f~~ 187 (201)
++|++.
T Consensus 77 ~~~ldp 82 (82)
T PF13899_consen 77 FFFLDP 82 (82)
T ss_dssp EEEEET
T ss_pred EEEeCC
Confidence 999863
No 89
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.30 E-value=2.5e-11 Score=90.55 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=63.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC----C-------------------cchhHHHHH
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----E-------------------YDEQSEVAE 172 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~----~-------------------~d~~~~l~~ 172 (201)
.+++++|+||++||++|+...|.+.++.+++++ .++.++.|+.++ . .|....+++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~--~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD--DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc--CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 689999999999999999999999999999985 368888876421 0 044567889
Q ss_pred HcCCCcccEEEEEE-CCcEEEEEee
Q 028976 173 RLKIKVNFSFVLFL-TFNEFILMAS 196 (201)
Q Consensus 173 ~~~V~~~Ptl~~f~-~G~~v~~i~~ 196 (201)
.|++.++|++++++ +|+.+....|
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEec
Confidence 99999999999997 5655555544
No 90
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.29 E-value=2.9e-11 Score=88.82 Aligned_cols=89 Identities=8% Similarity=0.073 Sum_probs=73.2
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-H--HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l--~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+|++++..++.++|+++|+|+++||++|+.+... | +++.+.+.+ ++.++++|++. .+..+++..|++.++|
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~--~e~~~~~~~~~~~~~P 78 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDS--SEGQRFLQSYKVDKYP 78 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCC--ccHHHHHHHhCccCCC
Confidence 46788888888899999999999999999999874 4 556666654 68999999844 4677899999999999
Q ss_pred EEEEEEC--CcEEEEEeee
Q 028976 181 SFVLFLT--FNEFILMASV 197 (201)
Q Consensus 181 tl~~f~~--G~~v~~i~~~ 197 (201)
+++++.. |+.+..+.|.
T Consensus 79 ~~~~i~~~~g~~l~~~~G~ 97 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGN 97 (114)
T ss_pred eEEEEeCccCcEeEEEcCC
Confidence 9999985 6667777665
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.27 E-value=1.9e-11 Score=90.24 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=58.3
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC-----------------CcchhHHHHHHcCCCc
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----------------EYDEQSEVAERLKIKV 178 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~-----------------~~d~~~~l~~~~~V~~ 178 (201)
.+++++|.||++||++|+.+.|.+.++.+++ .+..+.+|-.. -.|.+.++++.|+|.+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 93 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY-----PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV 93 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC-----CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc
Confidence 6799999999999999999999999998764 23333333210 0045568999999999
Q ss_pred ccEEEEEECCcEEEEEeee
Q 028976 179 NFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 179 ~Ptl~~f~~G~~v~~i~~~ 197 (201)
+|+++++++|+......|+
T Consensus 94 ~P~~~vid~~gi~~~~~g~ 112 (123)
T cd03011 94 TPAIVIVDPGGIVFVTTGV 112 (123)
T ss_pred ccEEEEEcCCCeEEEEecc
Confidence 9999999988755555554
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.27 E-value=3.9e-11 Score=85.74 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-------------------cchhHHHHHHcCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKI 176 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-------------------~d~~~~l~~~~~V 176 (201)
.+++++|.||++||++|+...+.+.++.+++++ .++.++.|+++.+ .+....+++.|++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 589999999999999999999999999999863 3699999998332 0223678999999
Q ss_pred CcccEEEEEEC-CcEEEEE
Q 028976 177 KVNFSFVLFLT-FNEFILM 194 (201)
Q Consensus 177 ~~~Ptl~~f~~-G~~v~~i 194 (201)
.++|+++++++ |+.+...
T Consensus 96 ~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred CccceEEEECCCCcEEEEe
Confidence 99999999985 5444433
No 93
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.26 E-value=5.5e-11 Score=84.02 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=58.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNEFI 192 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~v~ 192 (201)
.+..-+..|+++||++|..+.+.++++++.++ ++.+..+|+ ++.++++++|+|.++||+++ +|+.+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~----~~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDG----ALFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEh----HhCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 56777888999999999999999999998775 499999999 89999999999999999974 666544
No 94
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.1e-11 Score=107.31 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+..+|...+.. .+..++|.||+|||++|+.+.|.|++++..+.. ...+.++.+|+ +.+..++.+++|+++|
T Consensus 149 l~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~----~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 149 LTKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDA----TVHKSLASRLEVRGYP 220 (383)
T ss_pred ccccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeecc----chHHHHhhhhcccCCc
Confidence 377888888876 789999999999999999999999999998864 46899999999 7889999999999999
Q ss_pred EEEEEECCcE
Q 028976 181 SFVLFLTFNE 190 (201)
Q Consensus 181 tl~~f~~G~~ 190 (201)
|+++|++|.+
T Consensus 221 t~~~f~~~~~ 230 (383)
T KOG0191|consen 221 TLKLFPPGEE 230 (383)
T ss_pred eEEEecCCCc
Confidence 9999999987
No 95
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.21 E-value=5.2e-11 Score=93.78 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-------------------chhHHHHHHcCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------------------DEQSEVAERLKI 176 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-------------------d~~~~l~~~~~V 176 (201)
.+++++|+||++||++|+.+.|.++++.++ ++.++.|+..+.. |...++++.|++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 689999999999999999999999988653 3667777753211 344567889999
Q ss_pred CcccEEEEEE-CCcEEEEEeee
Q 028976 177 KVNFSFVLFL-TFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~-~G~~v~~i~~~ 197 (201)
.++|+.++++ +|+.+....|.
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~ 157 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGP 157 (173)
T ss_pred eeCCeEEEEcCCceEEEEEecc
Confidence 9999777776 66656555553
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=5.8e-11 Score=116.20 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=63.5
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEecc---CC--------------------cchhHHHHH
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI---DE--------------------YDEQSEVAE 172 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~---~~--------------------~d~~~~l~~ 172 (201)
++++|||+|||+||++|+.+.|.|+++.+++++ .++.++.|... .+ .|....+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~--~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD--QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC--CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 689999999999999999999999999999975 35888877421 10 033557889
Q ss_pred HcCCCcccEEEEEE-CCcEEEEEee
Q 028976 173 RLKIKVNFSFVLFL-TFNEFILMAS 196 (201)
Q Consensus 173 ~~~V~~~Ptl~~f~-~G~~v~~i~~ 196 (201)
+|+|.++||+++|+ +|+.+..+.|
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G 521 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSG 521 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEec
Confidence 99999999999995 6776666555
No 97
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.19 E-value=6.6e-11 Score=86.18 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=53.3
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcch-----------------hHHHHHHcCCCc
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-----------------QSEVAERLKIKV 178 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~-----------------~~~l~~~~~V~~ 178 (201)
++++++|+||++||++|+.+.|.++++.+++.+ ++.++.+. ....++ ..++.+.|++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 389999999999999999999999999888754 45555442 111111 234677888888
Q ss_pred ccEEEEEECCcEEE
Q 028976 179 NFSFVLFLTFNEFI 192 (201)
Q Consensus 179 ~Ptl~~f~~G~~v~ 192 (201)
+|+.+++++.+++.
T Consensus 96 ~P~~~vid~~G~v~ 109 (114)
T cd02967 96 LPYAVLLDEAGVIA 109 (114)
T ss_pred cCeEEEECCCCeEE
Confidence 99988888655543
No 98
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=1.7e-10 Score=89.96 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=63.7
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------chhHHHHHHcCCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------DEQSEVAERLKIK 177 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------d~~~~l~~~~~V~ 177 (201)
.+++++|.||++||++|+...|.+.++.+++++ .++.++.++++... |.+.++++.|+|.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~--~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE--KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc--CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 689999999999999999999999999999875 25778888764321 3456889999999
Q ss_pred cccEEEEEECCcEEE-EEeee
Q 028976 178 VNFSFVLFLTFNEFI-LMASV 197 (201)
Q Consensus 178 ~~Ptl~~f~~G~~v~-~i~~~ 197 (201)
++|++++++.++++. ...|.
T Consensus 138 ~~P~~~lid~~g~i~~~~~g~ 158 (173)
T PRK03147 138 PLPTTFLIDKDGKVVKVITGE 158 (173)
T ss_pred CcCeEEEECCCCcEEEEEeCC
Confidence 999999998555544 44553
No 99
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.18 E-value=1.4e-10 Score=88.28 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=62.3
Q ss_pred CCCEEEEEEECC-CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------chhHHHHHHcCCC
Q 028976 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------DEQSEVAERLKIK 177 (201)
Q Consensus 116 ~~k~vlV~Fya~-WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------d~~~~l~~~~~V~ 177 (201)
.+++++|+||++ ||++|+...|.+.++.+.+++ .++.++.+....+. |....+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD--KGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc--CceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 799999999999 999999999999999988765 25677766653321 5566789999999
Q ss_pred ---------cccEEEEEECCcEEE-EEee
Q 028976 178 ---------VNFSFVLFLTFNEFI-LMAS 196 (201)
Q Consensus 178 ---------~~Ptl~~f~~G~~v~-~i~~ 196 (201)
++|+++++.+.++|. ...|
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred cccccccCCeecEEEEEECCCEEEEEEeC
Confidence 999999888655544 4433
No 100
>smart00594 UAS UAS domain.
Probab=99.12 E-value=7.7e-10 Score=82.41 Aligned_cols=82 Identities=9% Similarity=0.042 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-H--HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l--~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
-..+|++++..+..++|+++|.|+++||+.|+.+... | .++.+.+.. ++.+..+|++. .+...++..|++.+
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~--~eg~~l~~~~~~~~ 86 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDT--SEGQRVSQFYKLDS 86 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCC--hhHHHHHHhcCcCC
Confidence 3457888888888899999999999999999999886 3 555666644 69999999855 45678999999999
Q ss_pred ccEEEEEECC
Q 028976 179 NFSFVLFLTF 188 (201)
Q Consensus 179 ~Ptl~~f~~G 188 (201)
+|++.++...
T Consensus 87 ~P~~~~l~~~ 96 (122)
T smart00594 87 FPYVAIVDPR 96 (122)
T ss_pred CCEEEEEecC
Confidence 9999999743
No 101
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.06 E-value=4.8e-10 Score=79.27 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=61.7
Q ss_pred CCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc-hhHHHHHHcC--CCcccEEEEEECCcEEE
Q 028976 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLK--IKVNFSFVLFLTFNEFI 192 (201)
Q Consensus 117 ~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d-~~~~l~~~~~--V~~~Ptl~~f~~G~~v~ 192 (201)
+++++++||++||++|+.+.|.+.++.+++.. .+.+..+|+ . ...++...|+ +..+|++.++.+|..+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 103 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNV----DDENPDLAAEFGVAVRSIPTLLLFKDGKEVD 103 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEEC----CCCChHHHHHHhhhhccCCeEEEEeCcchhh
Confidence 88999999999999999999999999999875 588999998 5 6788899999 99999999998887643
No 102
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.05 E-value=1.1e-09 Score=86.79 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=53.3
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc--------c-hhHHHHHHcCC--CcccEEEEEECCc
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------D-EQSEVAERLKI--KVNFSFVLFLTFN 189 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~--------d-~~~~l~~~~~V--~~~Ptl~~f~~G~ 189 (201)
+|+||++||++|++..|.+.+++++++ +.++.|+++... + ....+.+.|++ .++||.++++..+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 777999999999999999999999973 566666653320 2 33457789995 6999999998544
Q ss_pred EE-E-EEeee
Q 028976 190 EF-I-LMASV 197 (201)
Q Consensus 190 ~v-~-~i~~~ 197 (201)
++ . ...|.
T Consensus 148 ~i~~~~~~G~ 157 (181)
T PRK13728 148 LEALPLLQGA 157 (181)
T ss_pred cEEEEEEECC
Confidence 43 3 45554
No 103
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.03 E-value=1.4e-09 Score=87.00 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec-------------cC-CcchhHHHHHHcCCCcccE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV-------------ID-EYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~-------------~~-~~d~~~~l~~~~~V~~~Pt 181 (201)
.+++++|.||++||++|+.+.|.+.++.++... ++.++..|- +. ......++++.|+|.++|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~---~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET---DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC---cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 689999999999999999999999998876432 455554221 00 0022457889999999999
Q ss_pred EEEEECCcEEE
Q 028976 182 FVLFLTFNEFI 192 (201)
Q Consensus 182 l~~f~~G~~v~ 192 (201)
.+++++.+++.
T Consensus 150 ~~lID~~G~I~ 160 (189)
T TIGR02661 150 GVLLDQDGKIR 160 (189)
T ss_pred EEEECCCCeEE
Confidence 99888655554
No 104
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.02 E-value=1e-09 Score=86.72 Aligned_cols=89 Identities=24% Similarity=0.376 Sum_probs=82.7
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
..++.+..+|-+.+. ....|+++||-|.-..|+.|...|+.+++.+-+ ..|++||+ +..|-|+.+++|
T Consensus 68 y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvna----e~~PFlv~kL~I 135 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNA----EKAPFLVTKLNI 135 (211)
T ss_pred EEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEec----ccCceeeeeeee
Confidence 456778899999887 788999999999999999999999999999876 89999999 999999999999
Q ss_pred CcccEEEEEECCcEEEEEeee
Q 028976 177 KVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
..+|++.+|++|..+..+.|+
T Consensus 136 kVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 136 KVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eEeeeEEEEEcCEEEEEEeeH
Confidence 999999999999999999885
No 105
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.7e-10 Score=90.83 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred ccceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHH
Q 028976 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (201)
Q Consensus 94 ~~~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~ 173 (201)
.+.++.+...+.+++.+... ..+.++|.|||.|.+.|....|.+.+++.+|.. ..+.|.+||+ ...++.+.+
T Consensus 123 pe~ikyf~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDi----Grfpd~a~k 194 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDI----GRFPDVAAK 194 (265)
T ss_pred chheeeecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceee----ccCcChHHh
Confidence 34456777788888888754 788999999999999999999999999999975 4799999999 888899999
Q ss_pred cCCC------cccEEEEEECCcEEEEEe
Q 028976 174 LKIK------VNFSFVLFLTFNEFILMA 195 (201)
Q Consensus 174 ~~V~------~~Ptl~~f~~G~~v~~i~ 195 (201)
|+|. .+||+++|.+|+|+.+..
T Consensus 195 fris~s~~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 195 FRISLSPGSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred eeeccCcccccCCeEEEEccchhhhcCc
Confidence 9986 699999999999987543
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.99 E-value=1.3e-09 Score=86.76 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=56.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEE------EEEeccCC-------------------------c
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIF------LKHNVIDE-------------------------Y 164 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~------~~vd~~~~-------------------------~ 164 (201)
.||.++|+|||+||++|+..+|.++++.++ ++.+ ..||..+. .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 799999999999999999999999999643 2333 45554321 0
Q ss_pred chhHHHHHHcCCCcccEE-EEEE-CCcEEEEEeeee
Q 028976 165 DEQSEVAERLKIKVNFSF-VLFL-TFNEFILMASVI 198 (201)
Q Consensus 165 d~~~~l~~~~~V~~~Ptl-~~f~-~G~~v~~i~~~l 198 (201)
|....++..|++.++|+. ++++ +|+.+....|.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCC
Confidence 345567889999999877 6777 565566676653
No 107
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.96 E-value=6.3e-09 Score=78.48 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=70.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEE--CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFY--RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVN 179 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fy--a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~ 179 (201)
+..++++.+. .+...+|.|- .--++.+-...=+++++++++++ .++.+++||+ |++++|+.+|||.++
T Consensus 23 ~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDi----D~~~~LA~~fgV~si 92 (132)
T PRK11509 23 SESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADL----EQSEAIGDRFGVFRF 92 (132)
T ss_pred ccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEEC----CCCHHHHHHcCCccC
Confidence 4466666665 4555555553 33678888888899999999963 2599999999 999999999999999
Q ss_pred cEEEEEECCcEEEEEeee
Q 028976 180 FSFVLFLTFNEFILMASV 197 (201)
Q Consensus 180 Ptl~~f~~G~~v~~i~~~ 197 (201)
||+++|++|+.+..+.|+
T Consensus 93 PTLl~FkdGk~v~~i~G~ 110 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGI 110 (132)
T ss_pred CEEEEEECCEEEEEEeCc
Confidence 999999999999988875
No 108
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.91 E-value=5.1e-09 Score=80.68 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC---------------------cchhHHHHHHc
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERL 174 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~---------------------~d~~~~l~~~~ 174 (201)
.||.|.+.|.|.||+|||.+.|.+.++.+++.+....+.++-|+.+.. ++...+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 789999999999999999999999999999877444555555553221 13456789999
Q ss_pred CCCcccEEEEEECCcEE
Q 028976 175 KIKVNFSFVLFLTFNEF 191 (201)
Q Consensus 175 ~V~~~Ptl~~f~~G~~v 191 (201)
+|.++|++++.+..+.+
T Consensus 112 ~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTV 128 (157)
T ss_pred ccCcCceeEEecCCCCE
Confidence 99999999999865543
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.89 E-value=9.8e-09 Score=82.83 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=39.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.+++|||+|||+||++|+...|.+.++.+++++ .++.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~--~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP--LGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc--CceEEEEecc
Confidence 689999999999999999999999999999975 3688888876
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.89 E-value=1.4e-08 Score=79.49 Aligned_cols=76 Identities=29% Similarity=0.346 Sum_probs=61.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC------c-------------------chhHHH
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------Y-------------------DEQSEV 170 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~------~-------------------d~~~~l 170 (201)
.++++||.||++||+.|....+.+.++.+++++ .++.++.|..+.. + |....+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~--~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA--KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh--CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 689999999999999999999999999999874 3688888876321 0 344567
Q ss_pred HHHcCCCcccEEEEEECCcEEEE
Q 028976 171 AERLKIKVNFSFVLFLTFNEFIL 193 (201)
Q Consensus 171 ~~~~~V~~~Ptl~~f~~G~~v~~ 193 (201)
++.|+|...|+++++++++++..
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~~ 124 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLVY 124 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEEE
Confidence 88999999999999986666543
No 111
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.89 E-value=4.1e-09 Score=88.54 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=72.4
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 96 ~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
.+.++.+++.|.+++... ..+..|||+||-+.++.|..|...|..|+.+|+. +.|++|.+ ...+ +..+|.
T Consensus 126 ~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a----~~~~-~~~~f~ 195 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRA----SKCP-ASENFP 195 (265)
T ss_dssp SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEE----CGCC-TTTTS-
T ss_pred eEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEeh----hccC-cccCCc
Confidence 456777889999998653 1467899999999999999999999999999986 99999998 5444 678999
Q ss_pred CCcccEEEEEECCcEEEEEeee
Q 028976 176 IKVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
+..+||+++|++|..+.-+.|+
T Consensus 196 ~~~LPtllvYk~G~l~~~~V~l 217 (265)
T PF02114_consen 196 DKNLPTLLVYKNGDLIGNFVGL 217 (265)
T ss_dssp TTC-SEEEEEETTEEEEEECTG
T ss_pred ccCCCEEEEEECCEEEEeEEeh
Confidence 9999999999999888777665
No 112
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.86 E-value=1.6e-08 Score=74.31 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=63.3
Q ss_pred CCCEEEEEEECC-CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------chhHHHHHHcCCC
Q 028976 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------DEQSEVAERLKIK 177 (201)
Q Consensus 116 ~~k~vlV~Fya~-WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------d~~~~l~~~~~V~ 177 (201)
.+++++|.||++ ||++|+...+.+.++..++++ .++.++.|..+... |...++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD--KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc--ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 689999999999 999999999999999999875 36888888863321 4566789999999
Q ss_pred ------cccEEEEEECCcEEE
Q 028976 178 ------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 178 ------~~Ptl~~f~~G~~v~ 192 (201)
.+|++++++.++.+.
T Consensus 102 ~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp ETTTSEESEEEEEEETTSBEE
T ss_pred cccCCceEeEEEEECCCCEEE
Confidence 999999999877764
No 113
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.84 E-value=2.2e-08 Score=82.82 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.+++|||+|||+||++|+...|.|.++.+++++ .++.++.|++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~--~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT--QGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 689999999999999999999999999999976 3688888886
No 114
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.83 E-value=1.8e-08 Score=63.39 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=48.8
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHH---HHcCCCcccEEEEEECC
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA---ERLKIKVNFSFVLFLTF 188 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~---~~~~V~~~Ptl~~f~~G 188 (201)
++.||++||++|+.+.+.+.++ +... .++.+..+|+ +...+.. ..+++..+|++++++.|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDV----DEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEc----CCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 3332 3699999998 4444433 48999999999999987
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.83 E-value=2.6e-08 Score=76.62 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.+++|+|+|||+||+ |+...|.+.++.+++++ .++.++.|++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~--~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD--RGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC--CCEEEEEecc
Confidence 689999999999999 99999999999999975 3688988875
No 116
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.78 E-value=3.7e-08 Score=73.09 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECC-------CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc---chhHHH
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRT-------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSEV 170 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~-------WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~---d~~~~l 170 (201)
...++|.+.+.....++++++|.|+++ ||+.|++..|.+++.....++ +..++.+.+++.. +.+...
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHH
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCc
Confidence 367899999987666889999999865 999999999999888877654 6889888884431 112233
Q ss_pred HH--HcCCCcccEEEEEECCcE
Q 028976 171 AE--RLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 171 ~~--~~~V~~~Ptl~~f~~G~~ 190 (201)
-. ++++.++||++-|..++.
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp HH--CC---SSSEEEECTSS-E
T ss_pred eEcceeeeeecceEEEECCCCc
Confidence 33 599999999999987744
No 117
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.78 E-value=2e-08 Score=78.28 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-H--HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHc----
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL---- 174 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l--~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~---- 174 (201)
..+.|+.+-. ++|+++|+++++||+.|+.|... | .++++.+.+ +++-++||. ++.+++...|
T Consensus 26 ~~ea~~~Ak~----e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDr----ee~Pdid~~y~~~~ 94 (163)
T PF03190_consen 26 GEEALEKAKK----ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDR----EERPDIDKIYMNAV 94 (163)
T ss_dssp SHHHHHHHHH----HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEET----TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHh----cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEecc----ccCccHHHHHHHHH
Confidence 3455555544 89999999999999999999874 4 556666654 689999999 9999998888
Q ss_pred ----CCCcccEEEEEECCcEEEEEee
Q 028976 175 ----KIKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 175 ----~V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
|.-|+|+.+|....++.....+
T Consensus 95 ~~~~~~gGwPl~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 95 QAMSGSGGWPLTVFLTPDGKPFFGGT 120 (163)
T ss_dssp HHHHS---SSEEEEE-TTS-EEEEES
T ss_pred HHhcCCCCCCceEEECCCCCeeeeee
Confidence 8899999999996655444333
No 118
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.76 E-value=3.3e-08 Score=65.62 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=43.2
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f 185 (201)
+..|+++||++|+.+.+.|++. ++.+..+|++++.....++.+.+++.++|++.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 4579999999999999888652 3778888984432233457788999999999874
No 119
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.71 E-value=4.7e-08 Score=75.24 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.+|++||.|||+||++|+...|.+.++.+++++ .++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~--~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP--SHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh--CCeEEEEEec
Confidence 789999999999999999999999999999975 3688988885
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.70 E-value=3.9e-08 Score=66.34 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=41.0
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHH-----cCCCcccEEEEEECCcEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER-----LKIKVNFSFVLFLTFNEF 191 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~-----~~V~~~Ptl~~f~~G~~v 191 (201)
++.||++||++|+.+.+.|.++. +.+-.+|+ ++....... +++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi----~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDI----EEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeC----cCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 56799999999999999987664 33446787 444444333 489999997 57777543
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.67 E-value=1.6e-07 Score=71.08 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------chhHHHHHHcCCC--
Q 028976 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------DEQSEVAERLKIK-- 177 (201)
Q Consensus 117 ~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------d~~~~l~~~~~V~-- 177 (201)
++.+|+.||++||++|+...|.+.++.+++.+ .++.++.|..+... |.+..+.+.|++.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~--~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~ 101 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA--LGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRS 101 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh--cCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceec
Confidence 44555555799999999999999999999864 36888888764321 5566788899984
Q ss_pred ---------------------------cccEEEEEECCcEEE
Q 028976 178 ---------------------------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 178 ---------------------------~~Ptl~~f~~G~~v~ 192 (201)
..|+.++++.++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~ 143 (149)
T cd02970 102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTIL 143 (149)
T ss_pred CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEE
Confidence 799999998665543
No 122
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.3e-07 Score=70.40 Aligned_cols=82 Identities=12% Similarity=0.238 Sum_probs=66.1
Q ss_pred ccCCCEEEEEEECCCChhhHhcHHHH---HHHHHHhCCCCCCEEEEEEeccCCc------------chhHHHHHHcCCCc
Q 028976 114 KETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEY------------DEQSEVAERLKIKV 178 (201)
Q Consensus 114 ~~~~k~vlV~Fya~WC~~C~~l~p~l---~~l~~~~~~~~~~v~~~~vd~~~~~------------d~~~~l~~~~~V~~ 178 (201)
..+++..++.|-.+.|+.|.++...+ +++.+-+.. ++.++.+|++... ....+|++.|+|++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 33899999999999999999999875 556665655 6889999885532 23569999999999
Q ss_pred ccEEEEEEC-CcEEEEEeeee
Q 028976 179 NFSFVLFLT-FNEFILMASVI 198 (201)
Q Consensus 179 ~Ptl~~f~~-G~~v~~i~~~l 198 (201)
+||++||++ |+.+..+.|++
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ 136 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYM 136 (182)
T ss_pred CceEEEEcCCCCEEEecCCCC
Confidence 999999995 67777788864
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.64 E-value=1.5e-07 Score=70.67 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=60.7
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------chhHHHHHHcCCC
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------DEQSEVAERLKIK 177 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------d~~~~l~~~~~V~ 177 (201)
.+++++|.|| +.||+.|....|.+.++.+++.+ .++.++.|..+... |....+++.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA--LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 5889999999 58999999999999999998864 35777777642211 4455788999999
Q ss_pred cc---------cEEEEEEC-CcEEEEEeee
Q 028976 178 VN---------FSFVLFLT-FNEFILMASV 197 (201)
Q Consensus 178 ~~---------Ptl~~f~~-G~~v~~i~~~ 197 (201)
.. |+.+++++ |+.+....|+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~ 129 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKV 129 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecC
Confidence 98 89999985 5444455443
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.62 E-value=2.1e-07 Score=72.93 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCEEEEEEECCC-ChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------c-hhHHHHHHcC
Q 028976 116 TGSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------D-EQSEVAERLK 175 (201)
Q Consensus 116 ~~k~vlV~Fya~W-C~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------d-~~~~l~~~~~ 175 (201)
.+++++|+||++| |++|....|.|.++.+++. ++.++.|..+... | ....+++.||
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 6889999999999 9999999999999998873 4777777653311 3 3347888999
Q ss_pred CCccc---------EEEEEECCcEE
Q 028976 176 IKVNF---------SFVLFLTFNEF 191 (201)
Q Consensus 176 V~~~P---------tl~~f~~G~~v 191 (201)
+...| +.++++..+.|
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~I 143 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNKV 143 (167)
T ss_pred CeecccccCCceeeEEEEECCCCeE
Confidence 88777 88888754444
No 125
>PLN02412 probable glutathione peroxidase
Probab=98.59 E-value=1.9e-07 Score=73.14 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=39.6
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEecc
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~ 161 (201)
.++++||+|||+||++|+...|.+.++.+++++ .++.++.|++.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~--~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE--QGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh--CCcEEEEeccc
Confidence 689999999999999999999999999999986 36899998863
No 126
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.7e-08 Score=80.47 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=74.3
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
..+...++| +.. .++++++.|||+||.+|+++...++.+++..+ ++.+++.+. ++.++++..+.|.
T Consensus 4 ~~i~~~~~f---~~~---~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a----~~~~eis~~~~v~ 69 (227)
T KOG0911|consen 4 QFIVFQEQF---LDQ---KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEA----EEFPEISNLIAVE 69 (227)
T ss_pred eeehhHHHH---HHh---ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehh----hhhhHHHHHHHHh
Confidence 455677788 322 79999999999999999999999999999884 599999999 9999999999999
Q ss_pred cccEEEEEECCcEEEEEee
Q 028976 178 VNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 178 ~~Ptl~~f~~G~~v~~i~~ 196 (201)
+.|++.++..|..+.++.+
T Consensus 70 ~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 70 AVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred cCceeeeeecchhhhhhhc
Confidence 9999999999988766544
No 127
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.54 E-value=7.2e-07 Score=67.22 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHc---CCCcccEEEEEEC-CcEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL---KIKVNFSFVLFLT-FNEF 191 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~---~V~~~Ptl~~f~~-G~~v 191 (201)
..+.-++.|..+|||.|++..|.+.++++..+. +.+--+.. |++.++..+| |..++|+++++++ |+++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~r----d~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILR----DENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-H----HHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEe----cCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 566778889999999999999999999998753 66666666 7777876554 7789999999975 5665
Q ss_pred EEE
Q 028976 192 ILM 194 (201)
Q Consensus 192 ~~i 194 (201)
...
T Consensus 112 g~w 114 (129)
T PF14595_consen 112 GRW 114 (129)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 128
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.54 E-value=4.5e-07 Score=68.62 Aligned_cols=76 Identities=9% Similarity=0.116 Sum_probs=56.7
Q ss_pred CCCEEEEEEECCC-ChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------chh-HHHHHHcC
Q 028976 116 TGSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------DEQ-SEVAERLK 175 (201)
Q Consensus 116 ~~k~vlV~Fya~W-C~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------d~~-~~l~~~~~ 175 (201)
.+++++|.||++| |++|+...|.|.++.+++. ++.++.|+.+... |.. ..+++.|+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 6889999999999 6999999999999998874 4778888763210 222 57788888
Q ss_pred CCc------ccEEEEEEC-CcEEEEEe
Q 028976 176 IKV------NFSFVLFLT-FNEFILMA 195 (201)
Q Consensus 176 V~~------~Ptl~~f~~-G~~v~~i~ 195 (201)
+.. .|+.++++. |+.+....
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEE
Confidence 864 688888874 54444443
No 129
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.52 E-value=5.5e-07 Score=68.37 Aligned_cols=79 Identities=16% Similarity=-0.035 Sum_probs=56.9
Q ss_pred CC-CEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----------------cchh--HHHHHHc
Q 028976 116 TG-SLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQ--SEVAERL 174 (201)
Q Consensus 116 ~~-k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----------------~d~~--~~l~~~~ 174 (201)
.+ ++++|.|| ++||+.|....|.+.++.+++++ .++.++.|..+.. +|.. ..+++.|
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 103 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA--AGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAY 103 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh--CCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHh
Confidence 45 88888887 99999999999999999999864 3577777765331 1444 6788899
Q ss_pred CCCc----cc--EEEEEE-CCcEEEEEee
Q 028976 175 KIKV----NF--SFVLFL-TFNEFILMAS 196 (201)
Q Consensus 175 ~V~~----~P--tl~~f~-~G~~v~~i~~ 196 (201)
++.. +| ++++++ +|+.+....|
T Consensus 104 g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 104 GVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred CCccccCCCccceEEEECCCCEEEEEEec
Confidence 9883 33 778887 4544444444
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.51 E-value=5.2e-07 Score=71.96 Aligned_cols=75 Identities=9% Similarity=-0.006 Sum_probs=56.7
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC---------------------cchhHHHHHH
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAER 173 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~---------------------~d~~~~l~~~ 173 (201)
.+++++|.|| ++||++|....|.|.++.+++.+. ++.++.|..+.. +|....+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 6889999999 999999999999999999988643 455665554221 1345578899
Q ss_pred cCCC------cccEEEEEECCcEEE
Q 028976 174 LKIK------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 174 ~~V~------~~Ptl~~f~~G~~v~ 192 (201)
|+|. ..|+.++++..+.+.
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~ 132 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQ 132 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEE
Confidence 9987 469888888555544
No 131
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=5.2e-07 Score=66.27 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEEC--------CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc---chhHHH
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYR--------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSEV 170 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya--------~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~---d~~~~l 170 (201)
-.++|++.+++.. +++.++|.|++ +||+.|.+..|.+.+.-+..+. ++.|+.++++... +.+...
T Consensus 11 g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 11 GYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred hHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCcc
Confidence 5688888887654 45669999987 4999999999999888886655 7999999986542 334455
Q ss_pred HHHcCC-CcccEEEEEEC
Q 028976 171 AERLKI-KVNFSFVLFLT 187 (201)
Q Consensus 171 ~~~~~V-~~~Ptl~~f~~ 187 (201)
-...++ .++||++=|++
T Consensus 87 R~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 87 RKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccCCCceeecceeeEEcC
Confidence 666777 99999999985
No 132
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.50 E-value=5e-07 Score=70.94 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=56.8
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC------------------------cchhHHH
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEV 170 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~------------------------~d~~~~l 170 (201)
.+++++|.|| ++||++|....|.|.++.+++.+ .++.++.|..... .|....+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK--LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 6799999999 89999999999999999999875 2566666654221 1344567
Q ss_pred HHHcCCC------cccEEEEEECCcEEE
Q 028976 171 AERLKIK------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 171 ~~~~~V~------~~Ptl~~f~~G~~v~ 192 (201)
++.|++. .+|+.+++++.+.+.
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~ 133 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIR 133 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEE
Confidence 8889987 678899998554443
No 133
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.49 E-value=3.8e-07 Score=62.50 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=44.9
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc-hhHHHHHHcCCCcccEEEEEECCcE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d-~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
++.|+++||++|+.+.+.+.++. ... .+.++.+|...+.. ....+.+.+++..+|++ |-+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 46799999999999999999987 322 37777777622111 12247788899999998 345644
No 134
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.48 E-value=7.9e-07 Score=66.90 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCEEEEEEECCCChh-hHhcHHHHHHHHHHhCCCC-CCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQE-APVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~-C~~l~p~l~~l~~~~~~~~-~~v~~~~vd~ 160 (201)
.+++++|.||++||++ |....+.+.++.+++++.. .++.++.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 6889999999999998 9999999999999987622 3588887775
No 135
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=3e-06 Score=62.80 Aligned_cols=85 Identities=13% Similarity=0.220 Sum_probs=75.9
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
.+.+..+-++++... ..++|+|-|.-.|-+.|..|...+.++++.+... ..++-+|+ ++-+++.+-|++..
T Consensus 7 ~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdi----deV~~~~~~~~l~~ 77 (142)
T KOG3414|consen 7 TLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDI----DEVPDFVKMYELYD 77 (142)
T ss_pred ccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEec----chhhhhhhhhcccC
Confidence 456888889888765 8999999999999999999999999999999863 78888999 99999999999999
Q ss_pred ccEEEEEECCcEEE
Q 028976 179 NFSFVLFLTFNEFI 192 (201)
Q Consensus 179 ~Ptl~~f~~G~~v~ 192 (201)
.||++||-+++-+.
T Consensus 78 p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 78 PPTVMFFFNNKHMK 91 (142)
T ss_pred CceEEEEEcCceEE
Confidence 99999998887653
No 136
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.44 E-value=2.2e-06 Score=70.02 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=59.2
Q ss_pred HHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-------cchhHHHHHHcCCCccc
Q 028976 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------YDEQSEVAERLKIKVNF 180 (201)
Q Consensus 108 ~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-------~d~~~~l~~~~~V~~~P 180 (201)
.+|... .++.-|+.||.+.|+.|+.+.|++..++++++ +.+..|+++.. .-.+.+++++++|..+|
T Consensus 113 ~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P 185 (215)
T PF13728_consen 113 KALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP 185 (215)
T ss_pred HHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence 444443 67888999999999999999999999999984 56666666210 01457899999999999
Q ss_pred EEEEEECCc
Q 028976 181 SFVLFLTFN 189 (201)
Q Consensus 181 tl~~f~~G~ 189 (201)
+++++..+.
T Consensus 186 al~Lv~~~~ 194 (215)
T PF13728_consen 186 ALFLVNPNT 194 (215)
T ss_pred EEEEEECCC
Confidence 999999655
No 137
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.42 E-value=1.4e-06 Score=65.31 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------chhHHHHHHcCC
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------DEQSEVAERLKI 176 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------d~~~~l~~~~~V 176 (201)
.+++++|.|| +.||+.|....|.+.++.+++.+ .++.++.|...... |....+++.|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~--~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK--GGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6899999999 78999999999999999999853 35777777653210 445577889998
Q ss_pred Cccc---------EEEEEEC-CcEEEEEee
Q 028976 177 KVNF---------SFVLFLT-FNEFILMAS 196 (201)
Q Consensus 177 ~~~P---------tl~~f~~-G~~v~~i~~ 196 (201)
...| +++++++ |+.+....|
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEec
Confidence 8776 7777775 544444443
No 138
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.41 E-value=9.5e-07 Score=70.19 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=36.0
Q ss_pred CCCEE-EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLV-VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~v-lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.+++| ++.+||+||++|+...|.+.++.+++++ .++.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~--~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS--QGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh--CCcEEEEEec
Confidence 67754 5566999999999999999999999975 3688888875
No 139
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.40 E-value=3e-06 Score=62.68 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=60.1
Q ss_pred HHHHHHHhhccCCCEEEEEEECC----CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 105 EFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~----WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
+|++++..++++.|+++|++|++ ||..|+..... +++.+.+.. ++.+...|+.. .+..+++..+++.++|
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~--~eg~~la~~l~~~~~P 78 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAK--PEGYRVSQALRERTYP 78 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCC--hHHHHHHHHhCCCCCC
Confidence 57788888888999999999999 99999765421 334444433 68999999844 4567899999999999
Q ss_pred EEEEEE
Q 028976 181 SFVLFL 186 (201)
Q Consensus 181 tl~~f~ 186 (201)
++.++.
T Consensus 79 ~~~~l~ 84 (116)
T cd02991 79 FLAMIM 84 (116)
T ss_pred EEEEEE
Confidence 999994
No 140
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.39 E-value=1.3e-06 Score=67.06 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=57.3
Q ss_pred CCCEEEEEEECC-CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------chhHHHHHHcCCC
Q 028976 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------DEQSEVAERLKIK 177 (201)
Q Consensus 116 ~~k~vlV~Fya~-WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------d~~~~l~~~~~V~ 177 (201)
.+++++|.||++ ||+.|....+.+.++.+++++ .++.++.|..+... |....+++.|++.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~--~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK--AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 688999999976 678899999999999998865 35778877763311 4455678889987
Q ss_pred cc------------cEEEEEE-CCcEEEEEee
Q 028976 178 VN------------FSFVLFL-TFNEFILMAS 196 (201)
Q Consensus 178 ~~------------Ptl~~f~-~G~~v~~i~~ 196 (201)
.. |+.++++ +|+.+....|
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred cccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 64 6667776 5544444444
No 141
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.35 E-value=2.8e-06 Score=67.90 Aligned_cols=76 Identities=9% Similarity=-0.022 Sum_probs=58.8
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc---------------------chhHHHHHH
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---------------------DEQSEVAER 173 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~---------------------d~~~~l~~~ 173 (201)
.++++++.|| +.||+.|....+.|.++.+++.+. ++.++.|..+... |.+..+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 6889999999 999999999999999999998652 5666666643211 345678999
Q ss_pred cCC----Ccc--cEEEEEECCcEEEE
Q 028976 174 LKI----KVN--FSFVLFLTFNEFIL 193 (201)
Q Consensus 174 ~~V----~~~--Ptl~~f~~G~~v~~ 193 (201)
||+ .++ |+.++++.++.|..
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~ 133 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQA 133 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEE
Confidence 999 366 99999986665543
No 142
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.34 E-value=2.5e-06 Score=68.02 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=48.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC-------CcchhHHHHH-HcCCCcccEEEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------EYDEQSEVAE-RLKIKVNFSFVLFL 186 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~-------~~d~~~~l~~-~~~V~~~Ptl~~f~ 186 (201)
.+++|||.|||+||+.|++ .|.|+++.+++++ .++.++.+.+.+ ..++....++ ++++. +|-+-=++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~--~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~d 98 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD--QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIE 98 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh--CCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEc
Confidence 7899999999999999974 8899999999975 369999998732 1123345555 67763 56553333
No 143
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.28 E-value=3.7e-06 Score=58.36 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=47.4
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC--CCcccEEEEEECCcE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--IKVNFSFVLFLTFNE 190 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~--V~~~Ptl~~f~~G~~ 190 (201)
++.|+.+||++|+.....|+++..++. ++.+..+|+..+.....++.+..+ +..+|+++ .+|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKH 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEE
Confidence 667999999999999999999997754 488888888432122345665555 58999975 46654
No 144
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.26 E-value=2.2e-05 Score=58.74 Aligned_cols=84 Identities=11% Similarity=0.213 Sum_probs=70.0
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
.++++.+.++++... .++.|+|-|.-+|-+.|.++...+.+++++++. =..++-+|+ ++-+++-+.|.+.
T Consensus 4 ~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi----~~Vpdfn~~yel~- 73 (133)
T PF02966_consen 4 HLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDI----DEVPDFNQMYELY- 73 (133)
T ss_dssp EE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEET----TTTHCCHHHTTS--
T ss_pred ccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEc----ccchhhhcccccC-
Confidence 567888999998876 899999999999999999999999999999987 388999999 8999999999999
Q ss_pred cc-EEEEEECCcEEE
Q 028976 179 NF-SFVLFLTFNEFI 192 (201)
Q Consensus 179 ~P-tl~~f~~G~~v~ 192 (201)
-| |++||-+++-+.
T Consensus 74 dP~tvmFF~rnkhm~ 88 (133)
T PF02966_consen 74 DPCTVMFFFRNKHMM 88 (133)
T ss_dssp SSEEEEEEETTEEEE
T ss_pred CCeEEEEEecCeEEE
Confidence 77 566776776543
No 145
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.25 E-value=4.5e-06 Score=67.42 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=57.0
Q ss_pred CCCEEEE-EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----------------------cchhHHHH
Q 028976 116 TGSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVA 171 (201)
Q Consensus 116 ~~k~vlV-~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----------------------~d~~~~l~ 171 (201)
.++.++| .||++||+.|....+.|.++.+++++. ++.++.|.++.. .|....++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 5676655 689999999999999999999998752 566666655321 04556789
Q ss_pred HHcCCC------cccEEEEEECCcEEEE
Q 028976 172 ERLKIK------VNFSFVLFLTFNEFIL 193 (201)
Q Consensus 172 ~~~~V~------~~Ptl~~f~~G~~v~~ 193 (201)
+.||+. .+|+.+++++++.+..
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~ 131 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRW 131 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEE
Confidence 999985 5899999997666653
No 146
>PRK15000 peroxidase; Provisional
Probab=98.23 E-value=5.4e-06 Score=66.93 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=58.0
Q ss_pred CCCEEEEEEEC-CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------------chhHHH
Q 028976 116 TGSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------------DEQSEV 170 (201)
Q Consensus 116 ~~k~vlV~Fya-~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------------d~~~~l 170 (201)
.+++++|.||+ .||+.|....+.|.++.+++++. ++.++.+.++... |...++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 58899999999 59999999999999999999753 5777777653211 334467
Q ss_pred HHHcCCC------cccEEEEEECCcEEE
Q 028976 171 AERLKIK------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 171 ~~~~~V~------~~Ptl~~f~~G~~v~ 192 (201)
++.|++. ++|+.++++..+++.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~ 138 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVR 138 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEE
Confidence 8889987 799999998555544
No 147
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.21 E-value=2.2e-05 Score=56.87 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=65.2
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC-
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK- 177 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~- 177 (201)
.+.+.++|++++..+ ..++++|.=.++.||-..+....|++......+ ++.++.+|+-+.-+-...++++|||.
T Consensus 3 ~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 3 PLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVKH 77 (105)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCCc
Confidence 567899999999976 789999988999999999999999999998875 48899999954444556789999996
Q ss_pred cccEEEEEECCcEEE
Q 028976 178 VNFSFVLFLTFNEFI 192 (201)
Q Consensus 178 ~~Ptl~~f~~G~~v~ 192 (201)
.-|-++++++|+.+-
T Consensus 78 eSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 78 ESPQVILIKNGKVVW 92 (105)
T ss_dssp -SSEEEEEETTEEEE
T ss_pred CCCcEEEEECCEEEE
Confidence 789999999998763
No 148
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.13 E-value=2.5e-05 Score=65.32 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-------chhHHHHHHcCCCcc
Q 028976 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------DEQSEVAERLKIKVN 179 (201)
Q Consensus 107 ~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-------d~~~~l~~~~~V~~~ 179 (201)
++++... .++.-|+.||.+-|+.|.++.|++..++++++ +.+..|+++... -.+..++++++|..+
T Consensus 142 ~~~i~~l--a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 142 EKAIQQL--SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF 214 (256)
T ss_pred HHHHHHH--HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccC
Confidence 3444443 56788999999999999999999999999995 555556552210 123678999999999
Q ss_pred cEEEEEECCc
Q 028976 180 FSFVLFLTFN 189 (201)
Q Consensus 180 Ptl~~f~~G~ 189 (201)
|++++...+.
T Consensus 215 Pal~Lv~~~t 224 (256)
T TIGR02739 215 PALYLVNPKS 224 (256)
T ss_pred ceEEEEECCC
Confidence 9999988653
No 149
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.11 E-value=4.7e-07 Score=73.75 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc
Q 028976 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF 180 (201)
Q Consensus 101 ~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P 180 (201)
.+.+++.+.+. .-++++|+||||+.|+.+.|.|+.++.--.+ -++.+++||+ ..++.|.-+|-|...|
T Consensus 29 ~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDv----t~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 29 IDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDV----TTNPGLSGRFLVTALP 96 (248)
T ss_pred ecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEE----EeccccceeeEEEecc
Confidence 38889988874 3467899999999999999999999876544 4799999999 8899999999999999
Q ss_pred EEEEEECCc
Q 028976 181 SFVLFLTFN 189 (201)
Q Consensus 181 tl~~f~~G~ 189 (201)
|+.=.++|.
T Consensus 97 tIYHvkDGe 105 (248)
T KOG0913|consen 97 TIYHVKDGE 105 (248)
T ss_pred eEEEeeccc
Confidence 999887775
No 150
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.05 E-value=1.7e-05 Score=64.84 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=57.6
Q ss_pred CCCE-EEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----------------------cchhHHHH
Q 028976 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVA 171 (201)
Q Consensus 116 ~~k~-vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----------------------~d~~~~l~ 171 (201)
.++. ||+.||++||+.|....+.|.++.+++.+. ++.++.+.++.. .|.+..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 4666 467899999999999999999999998653 567777765331 03445678
Q ss_pred HHcCCC-------cccEEEEEECCcEEEEE
Q 028976 172 ERLKIK-------VNFSFVLFLTFNEFILM 194 (201)
Q Consensus 172 ~~~~V~-------~~Ptl~~f~~G~~v~~i 194 (201)
+.||+. .+|+.++++..+++..+
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 899983 68999999976665543
No 151
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.04 E-value=2.7e-05 Score=65.38 Aligned_cols=76 Identities=21% Similarity=0.109 Sum_probs=56.8
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC------------------------cchhHHH
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEV 170 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~------------------------~d~~~~l 170 (201)
.++++++.|| +.||++|....|.|.++.+++.+. ++.++.|.++.. +|.+..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 4677777777 899999999999999999998753 455666654321 0345678
Q ss_pred HHHcCCC-----cccEEEEEECCcEEEE
Q 028976 171 AERLKIK-----VNFSFVLFLTFNEFIL 193 (201)
Q Consensus 171 ~~~~~V~-----~~Ptl~~f~~G~~v~~ 193 (201)
++.||+. ..|+.++++..+.+..
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~ 202 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKH 202 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEE
Confidence 9999995 5899999986555543
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.03 E-value=2.4e-05 Score=51.46 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=37.1
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
++.|+++||++|+.+...+.+. ++.+..+|+..+.+...++.+..++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5679999999999998887752 255666777221112223444447899999975
No 153
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.03 E-value=1.7e-05 Score=64.10 Aligned_cols=86 Identities=17% Similarity=0.317 Sum_probs=74.2
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 96 ~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
.|.++.++++|-+.+.... +.-.++|+.|-+.-..|.+|...+.-|+.+|+. +.|+++-. .+.....+|.
T Consensus 139 ~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckiks-----s~~gas~~F~ 208 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKS-----SNTGASDRFS 208 (273)
T ss_pred eEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeee-----ccccchhhhc
Confidence 4778899999999997532 456778899999999999999999999999986 99999986 3346679999
Q ss_pred CCcccEEEEEECCcEE
Q 028976 176 IKVNFSFVLFLTFNEF 191 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v 191 (201)
.+++||+++|++|+.+
T Consensus 209 ~n~lP~LliYkgGeLI 224 (273)
T KOG3171|consen 209 LNVLPTLLIYKGGELI 224 (273)
T ss_pred ccCCceEEEeeCCchh
Confidence 9999999999999765
No 154
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.98 E-value=3.4e-05 Score=49.77 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=40.7
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
++.|+.+||++|+.....|++. ++.+-.+|++...+...++.+..+..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 4679999999999999988543 366777888443233445555569999999886
No 155
>PRK13189 peroxiredoxin; Provisional
Probab=97.95 E-value=3.7e-05 Score=63.03 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCCE-EEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------------chhHHHH
Q 028976 116 TGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------------DEQSEVA 171 (201)
Q Consensus 116 ~~k~-vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------------d~~~~l~ 171 (201)
.++. +|+.||++||+.|....+.|.++.+++.+. ++.++.+.++... |...+++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 4664 456778999999999999999999998653 5666666543211 3445678
Q ss_pred HHcCCC-------cccEEEEEECCcEEE
Q 028976 172 ERLKIK-------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 172 ~~~~V~-------~~Ptl~~f~~G~~v~ 192 (201)
+.||+. .+|+.++++..+.+.
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir 139 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIR 139 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEE
Confidence 999986 578889998665554
No 156
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.95 E-value=3.6e-05 Score=52.42 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=43.0
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-chhHHHHHHcCCCcccEEEEEECCcE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
++.|+++||++|+.+.+.|.++.. .+.++.++..+.. +....+.+..++.++|++ |-+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 467999999999999999998765 2556677762210 112346677899999996 456644
No 157
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.95 E-value=3.8e-05 Score=62.73 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=55.1
Q ss_pred CCCEEEE-EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-----------------------chhHHHH
Q 028976 116 TGSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-----------------------DEQSEVA 171 (201)
Q Consensus 116 ~~k~vlV-~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-----------------------d~~~~l~ 171 (201)
.+++++| .||++||+.|....+.|.++.+++.+. ++.++.+.++... |.+.+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 4665554 789999999999999999999998653 5667766653211 2345678
Q ss_pred HHcCCC-------cccEEEEEECCcEEEE
Q 028976 172 ERLKIK-------VNFSFVLFLTFNEFIL 193 (201)
Q Consensus 172 ~~~~V~-------~~Ptl~~f~~G~~v~~ 193 (201)
+.||+. ..|+.++++..+.|..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~ 138 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRL 138 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEE
Confidence 888873 4788888886665543
No 158
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.93 E-value=4.3e-05 Score=61.70 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=53.1
Q ss_pred CE-EEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----------------------cchhHHHHHH
Q 028976 118 SL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAER 173 (201)
Q Consensus 118 k~-vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----------------------~d~~~~l~~~ 173 (201)
++ +|+.||++||+.|....+.|.++.+++++. ++.++.|.++.. .|....+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 54 566889999999999999999999998753 567777765321 0345678999
Q ss_pred cCCC----c----ccEEEEEECCcEEE
Q 028976 174 LKIK----V----NFSFVLFLTFNEFI 192 (201)
Q Consensus 174 ~~V~----~----~Ptl~~f~~G~~v~ 192 (201)
||+. + .|+.++++..+++.
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~~G~I~ 130 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDPDKKIR 130 (203)
T ss_pred cCCccccCCCCceeeEEEEECCCCeEE
Confidence 9986 2 34678887555554
No 159
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.92 E-value=9.4e-05 Score=61.60 Aligned_cols=77 Identities=17% Similarity=0.099 Sum_probs=56.1
Q ss_pred HHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----cchhHHHHHHcCCCcccEE
Q 028976 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----YDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 108 ~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----~d~~~~l~~~~~V~~~Ptl 182 (201)
++|... .++.-|+.||.+-|+.|.++.|++..++++++= .+.-+.+|-... .-.+...+++++|..+|++
T Consensus 136 ~~i~~l--a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl 210 (248)
T PRK13703 136 QAIAKL--AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL---SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPAL 210 (248)
T ss_pred HHHHHH--HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceE
Confidence 445443 566889999999999999999999999999953 344444442111 0123456789999999999
Q ss_pred EEEECCc
Q 028976 183 VLFLTFN 189 (201)
Q Consensus 183 ~~f~~G~ 189 (201)
++...+.
T Consensus 211 ~Lv~~~t 217 (248)
T PRK13703 211 MLVDPKS 217 (248)
T ss_pred EEEECCC
Confidence 9998654
No 160
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.92 E-value=7.5e-05 Score=50.76 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=43.1
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
|.+++++|+.|..+...++++...++ +.+--+|. .+.+++ .+|||.++|++++ +|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~----~~~~~~-~~ygv~~vPalvI--ng~ 58 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI----EDFEEI-EKYGVMSVPALVI--NGK 58 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET----TTHHHH-HHTT-SSSSEEEE--TTE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc----cCHHHH-HHcCCCCCCEEEE--CCE
Confidence 34478889999999999999998873 55555666 667777 9999999999954 453
No 161
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.90 E-value=7.2e-05 Score=60.15 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=57.5
Q ss_pred CCCEEEEEEEC-CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------------chhHHH
Q 028976 116 TGSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------------DEQSEV 170 (201)
Q Consensus 116 ~~k~vlV~Fya-~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------------d~~~~l 170 (201)
.++.++|.||+ .||++|....+.+.++.+++.+. ++.++.|+++... |...++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 67899999994 88999999999999999999753 5777777653211 345578
Q ss_pred HHHcCCC------cccEEEEEECCcEEE
Q 028976 171 AERLKIK------VNFSFVLFLTFNEFI 192 (201)
Q Consensus 171 ~~~~~V~------~~Ptl~~f~~G~~v~ 192 (201)
++.||+. .+|+.+++++.+.+.
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~ 140 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLR 140 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEE
Confidence 8999986 468999998666544
No 162
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.90 E-value=5.1e-05 Score=49.58 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=42.5
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
++.|+++||++|+.+...|.+.. +.+..+|+..+.+...++.+..+...+|++. .+|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 45789999999999999988664 4566778744323345666677888999774 46644
No 163
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.88 E-value=4.3e-05 Score=53.27 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=45.4
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC--CcccEEEEEECCc
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI--KVNFSFVLFLTFN 189 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V--~~~Ptl~~f~~G~ 189 (201)
++.|..+||++|.++...|+++..++. ++.+..+|+..+.....++.+..+- ..+|+++ -+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~ 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEK 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCE
Confidence 567899999999999999999876543 3777788874321224467677774 7999984 3554
No 164
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.73 E-value=0.00012 Score=53.35 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcH---HHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIE---QGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~---p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
+.+++++.+. .+...++ |++.-|..+.... =++.++.+.+++ .+..+-++- +....|+.+||+..
T Consensus 15 d~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~----~~e~~L~~r~gv~~ 82 (107)
T PF07449_consen 15 DADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVAR----AAERALAARFGVRR 82 (107)
T ss_dssp -CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEH----HHHHHHHHHHT-TS
T ss_pred chhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECc----hhHHHHHHHhCCcc
Confidence 5667777776 4445444 5555555554444 478888888876 577777776 78889999999999
Q ss_pred ccEEEEEECCcEEEEEeee
Q 028976 179 NFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 179 ~Ptl~~f~~G~~v~~i~~~ 197 (201)
+|+++||++|+.+..+.|+
T Consensus 83 ~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 83 WPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp SSEEEEEETTEEEEEEESS
T ss_pred CCeEEEEECCEEEEEecCe
Confidence 9999999999999888775
No 165
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.69 E-value=0.00025 Score=56.76 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=48.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec--cC--Cc---------------------------
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV--ID--EY--------------------------- 164 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~--~~--~~--------------------------- 164 (201)
+++..++.|..+.|++|+++.+.+.+. .+ ++.+..+.+ .. ++
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~---~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~ 148 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD---GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVP 148 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC---ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCC
Confidence 578999999999999999999998761 11 233332222 11 10
Q ss_pred ----------chhHHHHHHcCCCcccEEEEEECCcE
Q 028976 165 ----------DEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 165 ----------d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
+++..+++++||+++|+++ |.+|..
T Consensus 149 ~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~ 183 (197)
T cd03020 149 PPAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV 183 (197)
T ss_pred CCccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE
Confidence 4566889999999999997 777755
No 166
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.66 E-value=0.00017 Score=49.32 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=43.8
Q ss_pred CCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 117 ~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
.+.-++.|+.+||+.|++....|++. ++.+-.+|++.+ ++..++.+..+...+|.+. .+|+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~-~~~~~~~~~~g~~~vP~i~--i~g~~ 67 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGND-ARGRSLRAVTGATTVPQVF--IGGKL 67 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCC-hHHHHHHHHHCCCCcCeEE--ECCEE
Confidence 44446679999999999999998753 245556777433 3345666778999999985 35543
No 167
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.58 E-value=0.00045 Score=47.45 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=45.2
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc----------------------------hhHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD----------------------------EQSEVAE 172 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d----------------------------~~~~l~~ 172 (201)
++.|+.++|++|..+.+.+.++.....+ ++.+....+.-... ++..+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4679999999999999999999754444 45555444322111 1335678
Q ss_pred HcCCCcccEEEEEE
Q 028976 173 RLKIKVNFSFVLFL 186 (201)
Q Consensus 173 ~~~V~~~Ptl~~f~ 186 (201)
++|+.++||+++.+
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 99999999999875
No 168
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.55 E-value=0.00058 Score=56.39 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=50.0
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC----C----------------------------
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----E---------------------------- 163 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~----~---------------------------- 163 (201)
+++.+++.|.-+-||.|+++.+.+.++.+. ++.+..+.... .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 678899999999999999999998887531 23333322211 0
Q ss_pred --------cchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 164 --------YDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 164 --------~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
-+++.++++++||+++||++ |.+|+.
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~ 213 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-LSNGTL 213 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-EcCCeE
Confidence 04677889999999999999 667754
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.55 E-value=0.00056 Score=62.62 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=55.5
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
.+..-+-.|++++|++|......+++++...+ +|..-.+|. .+.++++++|+|.++|++++ +|+.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~----~~~~~~~~~~~v~~VP~~~i--~~~~ 179 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDG----ALFQDEVEARNIMAVPTVFL--NGEE 179 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEc----hhCHhHHHhcCCcccCEEEE--CCcE
Confidence 34455888999999999999999999998755 588999999 99999999999999999964 5544
No 170
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.50 E-value=0.00068 Score=52.62 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.9
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~ 148 (201)
.+++.++.|+.+.|++|+.+.+.+.++.+++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578899999999999999999999999888754
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.47 E-value=0.00063 Score=62.91 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=51.8
Q ss_pred CCEE-EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 117 GSLV-VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 117 ~k~v-lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
++++ +-.|.++||+.|......+++++.+.+ ++..-.+|+ .+.++++++|+|.++|++++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~----~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDV----SHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEEC----cccHHHHHhCCceecCEEEE
Confidence 4555 445589999999999999999998865 488888999 88899999999999999886
No 172
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.43 E-value=0.00026 Score=48.05 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=39.0
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
+.|+.+||+.|......|++.. +.+-.+|++.+.....++.+..+...+|++ |-+|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~---------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG---------VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC---------CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5688999999999999998642 445555663322233455666788999997 34554
No 173
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.40 E-value=0.001 Score=55.61 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=54.4
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEecc--C-Cc----------------------------
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI--D-EY---------------------------- 164 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~--~-~~---------------------------- 164 (201)
+.+.+++.|.-+-|+.|+++.+.+.++.+. + ++.+..+... . ++
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 577889999999999999999988776543 1 2444333211 0 00
Q ss_pred ---------------chhHHHHHHcCCCcccEEEEEECCcEEEEEeee
Q 028976 165 ---------------DEQSEVAERLKIKVNFSFVLFLTFNEFILMASV 197 (201)
Q Consensus 165 ---------------d~~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~~ 197 (201)
+++..+++++||++.|++++-++.+++..+.|.
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~ 238 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGL 238 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCC
Confidence 234458899999999999998865666667665
No 174
>PHA03050 glutaredoxin; Provisional
Probab=97.39 E-value=0.00047 Score=50.30 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=39.3
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc---chhHHHHHHcCCCcccEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~---d~~~~l~~~~~V~~~Ptl~ 183 (201)
++.|..+|||+|++....|++..-+.+ .+-.+|+.++. +...++.+.-|.+.+|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~------~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG------AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC------CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE
Confidence 455999999999999999988764332 24445553211 1234667778989999983
No 175
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.38 E-value=0.00063 Score=45.54 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=41.7
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
++.|..+||+.|+.....|++. ++.+-.+|+....+...++.+..+-..+|+++ -+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 4568999999999999988863 35566778744333445677777888999884 4453
No 176
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.37 E-value=0.0015 Score=56.45 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=61.4
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhc-----HHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYI-----EQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l-----~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+.+||.+++. +.+.++|.||.|--+.=-.. ...+-+|+++.-+ ..++.|+.||. .+...+++++|+
T Consensus 40 neKNfk~~lK----kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE-~~gigfg~VD~----~Kd~klAKKLgv 110 (383)
T PF01216_consen 40 NEKNFKRALK----KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLE-DKGIGFGMVDS----KKDAKLAKKLGV 110 (383)
T ss_dssp -TTTHHHHHH----H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCG-GCTEEEEEEET----TTTHHHHHHHT-
T ss_pred chhHHHHHHH----hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcc-ccCcceEEecc----HHHHHHHHhcCc
Confidence 9999999998 68899999998864333322 2234566776654 56899999999 999999999999
Q ss_pred CcccEEEEEECCcEEEE
Q 028976 177 KVNFSFVLFLTFNEFIL 193 (201)
Q Consensus 177 ~~~Ptl~~f~~G~~v~~ 193 (201)
...+++.+|++|+.+..
T Consensus 111 ~E~~SiyVfkd~~~IEy 127 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEY 127 (383)
T ss_dssp -STTEEEEEETTEEEEE
T ss_pred cccCcEEEEECCcEEEe
Confidence 99999999999988764
No 177
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.37 E-value=0.00055 Score=45.73 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=39.3
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC-cccEEEEEECCc
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK-VNFSFVLFLTFN 189 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~-~~Ptl~~f~~G~ 189 (201)
++.|..+||+.|......|++. ++.+-.+|++.+.+...++.+..+.. .+|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 4568999999999999988763 35566677733222334455566777 999773 4554
No 178
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.34 E-value=0.0033 Score=48.89 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=67.6
Q ss_pred eeecCCHHHHHHHHHhhccCCCE-EEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 97 VREFKTDAEFFKILEKSKETGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~-vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
+.++ +.+++..... .+.+ +++.|...-......+...+.++++++++ .+.|+.+|+ +..+.+++.++
T Consensus 79 v~~~-t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~~f~~~d~----~~~~~~~~~~~ 146 (184)
T PF13848_consen 79 VPEL-TPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG---KINFVYVDA----DDFPRLLKYFG 146 (184)
T ss_dssp CEEE-STTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT---TSEEEEEET----TTTHHHHHHTT
T ss_pred cccc-chhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC---eEEEEEeeh----HHhHHHHHHcC
Confidence 3344 7889988886 5555 88888877788889999999999999876 699999999 77788999999
Q ss_pred CC--cccEEEEEE-CCcE
Q 028976 176 IK--VNFSFVLFL-TFNE 190 (201)
Q Consensus 176 V~--~~Ptl~~f~-~G~~ 190 (201)
+. .+|+++++. .++.
T Consensus 147 i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 147 IDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp TTTSSSSEEEEEETTTSE
T ss_pred CCCccCCEEEEEECCCCc
Confidence 98 999999999 3434
No 179
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.30 E-value=0.00061 Score=45.58 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=36.5
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
..|..+||+.|+.....|++. ++.+-.+|+..+ .+..+.....|...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCC-HHHHHHHHHcCCcccCEEEE
Confidence 457899999999999998753 366777888332 12222234458899999754
No 180
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.26 E-value=0.0017 Score=46.31 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=42.1
Q ss_pred CCCEEEEEEE----CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 116 TGSLVVVDFY----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 116 ~~k~vlV~Fy----a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
++.+|+|.-. +|||++|++....|.+.. +.+..+|+.++.+...++.+..|...+|.+. -+|+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~---------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~ 76 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACG---------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGE 76 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcC---------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 3455555443 399999999999988753 3455678744433445666777888999884 4453
No 181
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.19 E-value=0.0016 Score=45.66 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCCEEEEEEEC----CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 116 TGSLVVVDFYR----TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 116 ~~k~vlV~Fya----~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
++.+|+|.-.. |||+.|+.....|.+.. +.+..+|+....+...++.+..|-..+|.+ |.+|+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 35566654432 79999999999888764 345556663332334566677788999997 34554
No 182
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.19 E-value=0.0013 Score=45.29 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=38.0
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
++.|..+||+.|++....|++. ++.|-.+|++++ .+..+..+..+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE
Confidence 4568899999999998888542 477778888332 12222334568899999964
No 183
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.19 E-value=0.0017 Score=52.51 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCEEEEEEECCCChhhHhcHHHH---HHHHHHhCCCCCCEEEEEEe
Q 028976 117 GSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHN 159 (201)
Q Consensus 117 ~k~vlV~Fya~WC~~C~~l~p~l---~~l~~~~~~~~~~v~~~~vd 159 (201)
+++-+|+|+.-.|+||..+.+.+ +.+.+.+++ ++.+.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEec
Confidence 56779999999999999999876 778887765 44554433
No 184
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.18 E-value=0.001 Score=53.39 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=71.3
Q ss_pred ceeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC
Q 028976 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (201)
Q Consensus 96 ~v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~ 175 (201)
.|..| ++.+|-..+..+. .+-.|+|+.|...-+-|.-+...++.++.++++ ++|+++=.+. --..|-
T Consensus 92 ~V~~I-Sg~dyv~EVT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~-------cIpNYP 158 (240)
T KOG3170|consen 92 EVFPI-SGPDYVKEVTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATT-------CIPNYP 158 (240)
T ss_pred ceeec-cchHHHHHHHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEeccccc-------ccCCCc
Confidence 35566 7788887776654 688999999999999999999999999999986 8999886522 124556
Q ss_pred CCcccEEEEEECCcEEEEEeeee
Q 028976 176 IKVNFSFVLFLTFNEFILMASVI 198 (201)
Q Consensus 176 V~~~Ptl~~f~~G~~v~~i~~~l 198 (201)
=...||+++|..|.....+.|++
T Consensus 159 e~nlPTl~VY~~G~lk~q~igll 181 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGALKKQMIGLL 181 (240)
T ss_pred ccCCCeEEEeecchHHhheehhh
Confidence 67899999999998766666653
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.14 E-value=0.0021 Score=42.79 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=40.4
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
++.|..+||+.|.+....|++. ++.+-.+|++.+ .....+.+..+...+|.+ |-+|+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~-~~~~~~~~~~g~~~vP~i--fi~g~~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKD-ITGRSLRAVTGAMTVPQV--FIDGEL 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCC-hhHHHHHHHhCCCCcCeE--EECCEE
Confidence 5568999999999998888753 255666777433 233455566799999997 345543
No 186
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.11 E-value=0.0018 Score=46.39 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=37.0
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc---hhHHHHHHcCCCcccEEEEEECCc
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD---EQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d---~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
++.|..|||+.|+++...|.+.. +.+..+|++...+ ....+.+..|...+|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~---------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG---------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 44599999999999999887653 3334456532211 11234555678999997 45553
No 187
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.10 E-value=0.004 Score=57.03 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
.+..-+-.|.++.|++|......+++++...+ +|..-.+|. .+.++++++|+|.++|++++ +|+.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~----~~~~~~~~~~~v~~VP~~~i--~~~~ 180 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDG----ALFQDEVEALGIQGVPAVFL--NGEE 180 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEc----hhCHHHHHhcCCcccCEEEE--CCcE
Confidence 34555788999999999999999999998866 488888998 89999999999999999975 4544
No 188
>PRK10638 glutaredoxin 3; Provisional
Probab=97.05 E-value=0.0022 Score=44.05 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=40.8
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
++.|..+||++|++..-.|++.. +.+..+|++.+.+...++.+..+...+|++. .+|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g---------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG---------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 45678899999999999888643 4455567743323345667777889999873 35543
No 189
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.93 E-value=0.0024 Score=47.97 Aligned_cols=33 Identities=33% Similarity=0.746 Sum_probs=29.2
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~ 148 (201)
+.+.+++.|+.++|++|+.+.|.+.++..++++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 578999999999999999999999998877653
No 190
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.82 E-value=0.013 Score=40.85 Aligned_cols=72 Identities=32% Similarity=0.417 Sum_probs=55.3
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
.+.+.+++++.+. .++.++|-|+.++|+ .+...|.+++..+++ ++.|+.+.- .++++.+++..
T Consensus 3 ~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~~-------~~~~~~~~~~~ 65 (97)
T cd02981 3 ELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTSD-------KEVAKKLKVKP 65 (97)
T ss_pred ecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEECh-------HHHHHHcCCCC
Confidence 4567777887765 789999999999988 467778889988865 578866552 46777788764
Q ss_pred ccEEEEEECC
Q 028976 179 NFSFVLFLTF 188 (201)
Q Consensus 179 ~Ptl~~f~~G 188 (201)
|++++|++.
T Consensus 66 -~~i~l~~~~ 74 (97)
T cd02981 66 -GSVVLFKPF 74 (97)
T ss_pred -CceEEeCCc
Confidence 899999864
No 191
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.74 E-value=0.012 Score=43.65 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=57.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHH-HHhCCCCCCEEEEEEeccCCc-chhHHHHHHcCC--C
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLC-KGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKI--K 177 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~-~~~~~~~~~v~~~~vd~~~~~-d~~~~l~~~~~V--~ 177 (201)
+.-+|+.++. ..+.+||.|=.. -|--.-.-.|.+++ +.... ..++.++.|-+.+.- -+|.+|+++|+| .
T Consensus 10 D~~tFdKvi~----kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~-~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 10 DELTFDKVIP----KFKYVLVKFDVA--YPYGEKHDAFKKLAKEASAS-SDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp STTHHHHHGG----GSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC--SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred cceehhheec----cCceEEEEEecc--CCCcchHHHHHHHHHHHhcC-CCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 6778999998 689999999432 22334455678888 44443 568999999885532 367899999999 6
Q ss_pred cccEEEEEECCc
Q 028976 178 VNFSFVLFLTFN 189 (201)
Q Consensus 178 ~~Ptl~~f~~G~ 189 (201)
.+|.+++|.+|.
T Consensus 83 ~fPv~~LF~~~~ 94 (126)
T PF07912_consen 83 DFPVIYLFVGDK 94 (126)
T ss_dssp C-SEEEEEESST
T ss_pred cCCEEEEecCCC
Confidence 799999999554
No 192
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0041 Score=58.06 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-H--HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC---
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--- 175 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l--~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~--- 175 (201)
..+.|+++-. .+|||+|-...+||.+|.-|... | +++++-+.. +++-+|||- ++-|++.+.|.
T Consensus 32 ~~eAf~~A~~----edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDR----EERPDvD~~Ym~~~ 100 (667)
T COG1331 32 GEEAFAKAKE----EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDR----EERPDVDSLYMNAS 100 (667)
T ss_pred CHHHHHHHHH----hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeECh----hhccCHHHHHHHHH
Confidence 6788887776 89999999999999999999886 4 667777765 799999998 88787766664
Q ss_pred -----CCcccEEEEEECCcE
Q 028976 176 -----IKVNFSFVLFLTFNE 190 (201)
Q Consensus 176 -----V~~~Ptl~~f~~G~~ 190 (201)
--++|-.+|.-.+++
T Consensus 101 q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 101 QAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HHhccCCCCceeEEECCCCc
Confidence 558997777775544
No 193
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.50 E-value=0.026 Score=52.25 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
.+++++.+... .+...|+.|+.+.|..|..+...++++++ +.+ .+.+-..|. .++.+++++|+|...|++
T Consensus 354 ~~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~----~~~~~~~~~~~v~~~P~~ 423 (555)
T TIGR03143 354 RQQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNR----GEEPESETLPKITKLPTV 423 (555)
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEecc----ccchhhHhhcCCCcCCEE
Confidence 34566777653 56667888889999999999999999985 444 588877887 778899999999999999
Q ss_pred EEEE-CCcE-EEEEeeee
Q 028976 183 VLFL-TFNE-FILMASVI 198 (201)
Q Consensus 183 ~~f~-~G~~-v~~i~~~l 198 (201)
.+++ +|+. -....|++
T Consensus 424 ~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 424 ALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred EEEeCCCcccceEEEecC
Confidence 9996 4433 24455543
No 194
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.013 Score=50.11 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=66.5
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECC----CChhhHhcHHHHHHHHHHhCCC---CC--CEEEEEEeccCCcchhHHHHH
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQ---EA--PVIFLKHNVIDEYDEQSEVAE 172 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~----WC~~C~~l~p~l~~l~~~~~~~---~~--~v~~~~vd~~~~~d~~~~l~~ 172 (201)
+++.|...+.. ...+-.++|.|.|. .|.-|++....+.-++..+... .+ ++-|..||. ++.+++-+
T Consensus 46 n~d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~----~e~p~~Fq 120 (331)
T KOG2603|consen 46 NDDKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDY----DESPQVFQ 120 (331)
T ss_pred cCcchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEec----cccHHHHH
Confidence 88899998874 33566677888765 7999999999999988876431 12 578999999 99999999
Q ss_pred HcCCCcccEEEEEEC
Q 028976 173 RLKIKVNFSFVLFLT 187 (201)
Q Consensus 173 ~~~V~~~Ptl~~f~~ 187 (201)
.++++.+|++.+|..
T Consensus 121 ~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 121 QLNLNNVPHLVLFSP 135 (331)
T ss_pred HhcccCCCeEEEeCC
Confidence 999999999999964
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.011 Score=40.54 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=37.6
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcc-hhHHHHHHc-CCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERL-KIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d-~~~~l~~~~-~V~~~Ptl~~ 184 (201)
++.|..+||+.|++....|++. ++.+..+|++.... +..+..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 4568899999999999888843 35566666644321 223444555 8999998764
No 196
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.31 E-value=0.023 Score=44.85 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.6
Q ss_pred EEECCCChhhHhcHHHHHHHHHHhCC
Q 028976 123 DFYRTSCGSCKYIEQGFSKLCKGSGD 148 (201)
Q Consensus 123 ~Fya~WC~~C~~l~p~l~~l~~~~~~ 148 (201)
.|..|+|++|-...|.|.++..+++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58899999999999999999999976
No 197
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.28 E-value=0.015 Score=39.92 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=45.2
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
++.|..+.|+-|..+...+.++.... .+.+-.+|+ ++++++.++|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI----~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDI----DEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEET----TTTHHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEEC----CCCHHHHHHhcC-CCCEEEE
Confidence 57799999999999999999876543 489999999 888899999995 7998664
No 198
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.12 E-value=0.048 Score=39.24 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=59.9
Q ss_pred ecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC-
Q 028976 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK- 177 (201)
Q Consensus 99 ~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~- 177 (201)
.+.+..+|...+. ..+.|+|.|..+- ..-......+.+.++..++ .-.++.|||++ .+...||+++.|.
T Consensus 5 ~i~d~KdfKKLLR----Tr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG---~gT~~~vdCgd--~e~kKLCKKlKv~~ 74 (112)
T cd03067 5 DISDHKDFKKLLR----TRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG---QGTIAWIDCGD--SESRKLCKKLKVDP 74 (112)
T ss_pred cccchHHHHHHHh----hcCcEEEEEecch-hhHHHHHHHHHHHHHHhcC---ceeEEEEecCC--hHHHHHHHHHccCC
Confidence 4567799999997 6888888777653 3333444467888888876 57888999954 5688999999999
Q ss_pred ---ccc-EEEEEECCc
Q 028976 178 ---VNF-SFVLFLTFN 189 (201)
Q Consensus 178 ---~~P-tl~~f~~G~ 189 (201)
--| ++.=|++|.
T Consensus 75 ~~kp~~~~LkHYKdG~ 90 (112)
T cd03067 75 SSKPKPVELKHYKDGD 90 (112)
T ss_pred CCCCCcchhhcccCCC
Confidence 555 455677775
No 199
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.12 E-value=0.09 Score=39.46 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECC--CChh-h-HhcHHHHHHHHHHhCCCCCC-EEEEEEeccCCcchhHHHH
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRT--SCGS-C-KYIEQGFSKLCKGSGDQEAP-VIFLKHNVIDEYDEQSEVA 171 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~--WC~~-C-~~l~p~l~~l~~~~~~~~~~-v~~~~vd~~~~~d~~~~l~ 171 (201)
+.++++.+.|++.-. .++..+|-|.-. -|.. + ..+...+.++++++++ + +.|+.+|. ++...+.
T Consensus 4 ~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~----~~~~~~~ 72 (130)
T cd02983 4 IIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEA----GAQLDLE 72 (130)
T ss_pred eEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeC----cccHHHH
Confidence 456767777777664 455666666432 1322 3 4567779999999986 5 99999999 7777799
Q ss_pred HHcCCC--cccEEEEEECCc
Q 028976 172 ERLKIK--VNFSFVLFLTFN 189 (201)
Q Consensus 172 ~~~~V~--~~Ptl~~f~~G~ 189 (201)
+.||+. ++|+++++...+
T Consensus 73 ~~fgl~~~~~P~v~i~~~~~ 92 (130)
T cd02983 73 EALNIGGFGYPAMVAINFRK 92 (130)
T ss_pred HHcCCCccCCCEEEEEeccc
Confidence 999995 599999998654
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.12 E-value=0.047 Score=39.81 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHH---hCCCCCCEEEEEEeccCCcchhHHHHHHcCCCc
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG---SGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKV 178 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~---~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~ 178 (201)
+.+++..... .+.+..+.|+. -..-..+...+.+++++ +++ ++.|+.+|. ++.....+.||+..
T Consensus 5 t~e~~~~~~~----~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~----~~~~~~~~~fgl~~ 71 (111)
T cd03072 5 TFENAEELTE----EGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG---AINFLTADG----DKFRHPLLHLGKTP 71 (111)
T ss_pred ccccHHHHhc----CCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc---eEEEEEEec----hHhhhHHHHcCCCH
Confidence 6677776665 45555555662 22346788889999999 765 799999999 77666889999997
Q ss_pred --ccEEEEEECC
Q 028976 179 --NFSFVLFLTF 188 (201)
Q Consensus 179 --~Ptl~~f~~G 188 (201)
+|.+.+...+
T Consensus 72 ~~~P~i~i~~~~ 83 (111)
T cd03072 72 ADLPVIAIDSFR 83 (111)
T ss_pred hHCCEEEEEcch
Confidence 9999998853
No 201
>PRK10824 glutaredoxin-4; Provisional
Probab=96.11 E-value=0.017 Score=42.67 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCCEEEEEEEC----CCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 116 TGSLVVVDFYR----TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 116 ~~k~vlV~Fya----~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
+..+|+|.-.. |||+.|++....|.++... +..+|+.++.+....+.+.-|-..+|.++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~---------~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGER---------FAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCC---------ceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 34555554443 6999999999998876422 23345532223334455556777788665
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.066 Score=41.65 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=55.8
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----------------cchhHHHHHHcCCC
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK 177 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----------------~d~~~~l~~~~~V~ 177 (201)
.+++|++.|| ..|++.|-..+-.|.+...++.+. +..++.|-.+.. +|...++++.|||.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 7889999999 889999999999999999888763 566666664321 16777788999884
Q ss_pred c------------ccEEEEEECCcEEE
Q 028976 178 V------------NFSFVLFLTFNEFI 192 (201)
Q Consensus 178 ~------------~Ptl~~f~~G~~v~ 192 (201)
. .++..+++.++.+.
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~ 133 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIR 133 (157)
T ss_pred cccccCccccccccceEEEECCCCeEE
Confidence 4 45666666554443
No 203
>PTZ00062 glutaredoxin; Provisional
Probab=95.57 E-value=0.057 Score=43.80 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=37.3
Q ss_pred CCCEEEEEEE----CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 116 TGSLVVVDFY----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 116 ~~k~vlV~Fy----a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
+..+|+|.-. +|||+.|+++...|.+.. +.+..+|+.+..+....+.+.-+-..+|.+.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~---------i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSG---------VKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcC---------CCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 4555555443 379999999988888542 4566678743322334455555767788765
No 204
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.51 E-value=0.15 Score=37.11 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=43.5
Q ss_pred hhhHhcHHHHHHHHHHhC-CCCCCEEEEEEeccCCcchhHHHHHHcCCCc----ccEEEEEECC
Q 028976 130 GSCKYIEQGFSKLCKGSG-DQEAPVIFLKHNVIDEYDEQSEVAERLKIKV----NFSFVLFLTF 188 (201)
Q Consensus 130 ~~C~~l~p~l~~l~~~~~-~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~----~Ptl~~f~~G 188 (201)
..-..+...+.+++++++ + ++.|+.+|. ++.....+.||+.. +|++.++..+
T Consensus 31 ~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~----~~~~~~l~~fgl~~~~~~~P~~~i~~~~ 87 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDR---KLNFAVADK----EDFSHELEEFGLDFSGGEKPVVAIRTAK 87 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCC---eEEEEEEcH----HHHHHHHHHcCCCcccCCCCEEEEEeCC
Confidence 445678888999999998 5 699999999 77767889999985 9999998853
No 205
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.47 E-value=0.062 Score=40.74 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=36.4
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
..+++|+.|+..-|++|+.+.+.+.++.+++-+ .+++.|...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEc
Confidence 578899999999999999999999999998832 23788888876
No 206
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.38 E-value=0.045 Score=42.17 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCCEE-EEEEECCCChhhHhc-HHHHHHHHHHhCCCCCCE-EEEEEec
Q 028976 116 TGSLV-VVDFYRTSCGSCKYI-EQGFSKLCKGSGDQEAPV-IFLKHNV 160 (201)
Q Consensus 116 ~~k~v-lV~Fya~WC~~C~~l-~p~l~~l~~~~~~~~~~v-~~~~vd~ 160 (201)
.++++ |+.|.+.||+.|... .+.|.+..+++.+. ++ .++.+..
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~ 73 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSV 73 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEEC
Confidence 34444 444459999999999 99999998888653 33 3444443
No 207
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.18 Score=36.44 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=40.5
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc-chhHHHHHHcCCCcccEEE
Q 028976 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~-d~~~~l~~~~~V~~~Ptl~ 183 (201)
..++++. ..+|+| |..+||+.|+++...|.+ ++ .+..++.+|-.... +-...|.+--+-+.+|.++
T Consensus 6 ~v~~~i~-----~~~VVi-fSKs~C~~c~~~k~ll~~----~~---v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF 72 (104)
T KOG1752|consen 6 KVRKMIS-----ENPVVI-FSKSSCPYCHRAKELLSD----LG---VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF 72 (104)
T ss_pred HHHHHhh-----cCCEEE-EECCcCchHHHHHHHHHh----CC---CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE
Confidence 4555553 445544 999999999998777777 22 24667777752111 1222344444567888765
Q ss_pred E
Q 028976 184 L 184 (201)
Q Consensus 184 ~ 184 (201)
+
T Consensus 73 I 73 (104)
T KOG1752|consen 73 I 73 (104)
T ss_pred E
Confidence 3
No 208
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.73 E-value=0.058 Score=48.23 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=36.8
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHH---------cCCCcccEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER---------LKIKVNFSFVL 184 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~---------~~V~~~Ptl~~ 184 (201)
++.|..|||++|++....|.+. ++.+-.+|++.. ....++.++ .|.+.+|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5679999999999998888764 256667888322 222232222 47889999854
No 209
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.01 E-value=0.33 Score=37.31 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=36.8
Q ss_pred EEEEECC------CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC----CcccEEE
Q 028976 121 VVDFYRT------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI----KVNFSFV 183 (201)
Q Consensus 121 lV~Fya~------WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V----~~~Ptl~ 183 (201)
+|.|.++ ||+.|+.+...|+.+ +|.+-.+|++...+...+|.+.++- ..+|.++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF 65 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF 65 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE
Confidence 3456777 899999999988765 2667778884332334466666665 6778665
No 210
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.26 E-value=0.65 Score=31.32 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=48.5
Q ss_pred EEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEE
Q 028976 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185 (201)
Q Consensus 120 vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f 185 (201)
++..|-+.--+..++....+.++.+++.+ .++.+--+|+ .+++++++.++|-++||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv----~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDV----LKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEc----ccCHhHHhhCCEEEechhhhc
Confidence 44455566667888888889999888753 4788999999 999999999999999998733
No 211
>PRK09301 circadian clock protein KaiB; Provisional
Probab=89.53 E-value=1.4 Score=31.85 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=53.6
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f 185 (201)
.+..++=.|.|.--+..++....+.++.+++-. +.+.+=-+|+ .+++++++.++|-++||++=.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv----~~qPelAE~~~IvATPTLIK~ 67 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDV----LKNPQLAEEDKILATPTLAKI 67 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEc----ccCHhHHhHCCeEEecHHhhc
Confidence 456777778888889999999999999887643 2588888999 999999999999999998743
No 212
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=89.48 E-value=3.1 Score=32.29 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=29.3
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEe
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHN 159 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd 159 (201)
|..|+-.-||+|-...+.+.++.+.+.+ -.+.+..+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEeccc
Confidence 6678899999999999999999999843 245555553
No 213
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.23 E-value=1.5 Score=30.66 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=50.9
Q ss_pred CEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEE
Q 028976 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185 (201)
Q Consensus 118 k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f 185 (201)
..++=.|.|.--+..+.....+.++.+++-. +.+.+=-+|+ .+++++++.++|-+.||++=.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~--g~y~LeVIDv----~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ--GVYALKVIDV----LKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEc----ccCHhHHhHCCEEEecHHhhc
Confidence 4556667788888889998899999887643 2588888999 999999999999999998743
No 214
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=89.09 E-value=4.2 Score=28.87 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=50.0
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
..+.+.+++++.+. .++.++|=|+..--+ .+...|.+.+..+++ ++.|+...- .++...+++
T Consensus 3 ~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~~-------~~~~~~~~~- 64 (104)
T cd03069 3 VELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTSD-------KQLLEKYGY- 64 (104)
T ss_pred cccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEECh-------HHHHHhcCC-
Confidence 35567888888886 577777777765443 466778888888865 577865442 366788888
Q ss_pred cccEEEEEE
Q 028976 178 VNFSFVLFL 186 (201)
Q Consensus 178 ~~Ptl~~f~ 186 (201)
.|++++|+
T Consensus 65 -~~~ivl~~ 72 (104)
T cd03069 65 -GEGVVLFR 72 (104)
T ss_pred -CCceEEEe
Confidence 78888884
No 215
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=88.83 E-value=0.085 Score=45.13 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFL 186 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~ 186 (201)
+..+|-+.||+.||+.-+..+|.++-...-++. +....++ ++...++...+|++++.|++.+-.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~ve---e~~~lpsv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVE---ESQALPSVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc----cccccHH---HHhhcccchhccccccCCcceeec
Confidence 467899999999999999999999888877753 3333322 123456678999999999988764
No 216
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=88.78 E-value=1.7 Score=34.04 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=36.8
Q ss_pred CCCEEEEEEECCCC-hhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC
Q 028976 116 TGSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID 162 (201)
Q Consensus 116 ~~k~vlV~Fya~WC-~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~ 162 (201)
.+|+++|.|.-+.| ..|-.+...+.++.+.+++...++.++-|.++-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 79999999988889 679988888888888776544578888777643
No 217
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.70 E-value=1.4 Score=28.65 Aligned_cols=58 Identities=9% Similarity=-0.057 Sum_probs=38.0
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
+.|+.+||+.|++..-.+++..- .+.+..+|.. +...++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-------~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-------TVELREVELK---NKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-------CcEEEEeCCC---CCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 35789999999998777765542 2455566651 23356666667789999852 23544
No 218
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.07 E-value=1 Score=33.20 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=25.3
Q ss_pred CEEEEEEECCCChhhHhcHHHHHHHHHHh
Q 028976 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGS 146 (201)
Q Consensus 118 k~vlV~Fya~WC~~C~~l~p~l~~l~~~~ 146 (201)
|.+++.|.-|-|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56889999999999999999997777665
No 219
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.91 E-value=1.9 Score=27.70 Aligned_cols=56 Identities=5% Similarity=-0.051 Sum_probs=35.8
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
..|+.++|+.|+++.-.+....-. +....+|........+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357889999999998887766432 33444554211122345666667778999964
No 220
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=85.95 E-value=2.6 Score=32.29 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 135 IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 135 l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
+...|.++++.+.+ ++.|+.+.- .++++.+++.. |++++|+++.
T Consensus 8 ~~~~f~~~A~~~~~---~~~F~~~~~-------~~~~~~~~~~~-p~i~~~k~~~ 51 (184)
T PF13848_consen 8 LFEIFEEAAEKLKG---DYQFGVTFN-------EELAKKYGIKE-PTIVVYKKFD 51 (184)
T ss_dssp HHHHHHHHHHHHTT---TSEEEEEE--------HHHHHHCTCSS-SEEEEEECTT
T ss_pred HHHHHHHHHHhCcC---CcEEEEEcH-------HHHHHHhCCCC-CcEEEeccCC
Confidence 45578899999976 588887753 46899999999 9999999843
No 221
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.81 E-value=1.1 Score=31.87 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=17.7
Q ss_pred EEEECCCChhhHhcHHHHHHH
Q 028976 122 VDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l 142 (201)
..|+.|+|+.|+.....|++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 468899999999998777764
No 222
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=85.54 E-value=3.4 Score=27.42 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=31.9
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
..++.++|+.|++..-.+.+..-. +.. +++........++.+.-.-..+|++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi~-------y~~--~~v~~~~~~~~~~~~~~p~~~vP~l~ 55 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELELD-------VIL--YPCPKGSPKRDKFLEKGGKVQVPYLV 55 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCCc-------EEE--EECCCChHHHHHHHHhCCCCcccEEE
Confidence 456788999999987777665422 233 44422111234554544557899985
No 223
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=84.98 E-value=6.2 Score=35.47 Aligned_cols=88 Identities=6% Similarity=0.018 Sum_probs=59.8
Q ss_pred HHHHHHhhccCCCEEEEEEECCCChhhHhcHH-HHHHH-HHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQ-GFSKL-CKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 106 f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p-~l~~l-~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
.-++|..++ .++.++|.|-+.-......|.. .|... ..... ...++-++|+. ++.....++.-|-+-.+|.+.
T Consensus 8 ipeAIa~aK-~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l--s~~fVaIkiqa--gs~aa~qFs~IYp~v~vPs~f 82 (506)
T KOG2507|consen 8 IPEAIAEAK-GKKALFVVYISGDDEESDKLNRLTWTDASVSDSL--SKYFVAIKIQA--GSVAATQFSAIYPYVSVPSIF 82 (506)
T ss_pred hHHHHHHhh-cCCeEEEEEEecCchHhhHHhhccchhhhhhhhh--hcceEEEEecc--Cchhhhhhhhhccccccccee
Confidence 345555544 5677777788877777777773 34333 22221 12466666665 446677889999999999999
Q ss_pred EEE-CCcEEEEEeeee
Q 028976 184 LFL-TFNEFILMASVI 198 (201)
Q Consensus 184 ~f~-~G~~v~~i~~~l 198 (201)
|+. .|..+..+.|++
T Consensus 83 fIg~sGtpLevitg~v 98 (506)
T KOG2507|consen 83 FIGFSGTPLEVITGFV 98 (506)
T ss_pred eecCCCceeEEeeccc
Confidence 998 678888888875
No 224
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=83.67 E-value=0.96 Score=32.55 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=17.5
Q ss_pred EEEECCCChhhHhcHHHHHHH
Q 028976 122 VDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l 142 (201)
..|+.|||+.|+.....|++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 468899999999988877654
No 225
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=83.37 E-value=1.8 Score=31.32 Aligned_cols=32 Identities=9% Similarity=0.315 Sum_probs=22.8
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID 162 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~ 162 (201)
..|+.++|+.|+.....|++- ++.|-.+|+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccC
Confidence 358899999999998777753 24555566533
No 226
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=83.21 E-value=3 Score=27.06 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=36.1
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
..|+.++|+.|++..-.+++..-. +....+|........+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~-------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE-------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC-------CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 358899999999887777765432 4444555422212346776666677899995
No 227
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=82.44 E-value=15 Score=26.20 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=49.5
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCC
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V 176 (201)
+..+.+.++++..+.. .++.++|=|+..--+ .+...|.+++..+.+ ++.|+...- .++...+++
T Consensus 2 v~~i~s~~ele~f~~~---~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~~-------~~~~~~~~~ 65 (107)
T cd03068 2 SKQLQTLKQVQEFLRD---GDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTFD-------SEIFKSLKV 65 (107)
T ss_pred ceEcCCHHHHHHHHhc---CCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEECh-------HHHHHhcCC
Confidence 3466788889888863 326777777766433 456668888888865 578865442 367788887
Q ss_pred CcccEEEEEE
Q 028976 177 KVNFSFVLFL 186 (201)
Q Consensus 177 ~~~Ptl~~f~ 186 (201)
. .|.+++|+
T Consensus 66 ~-~~~vvl~r 74 (107)
T cd03068 66 S-PGQLVVFQ 74 (107)
T ss_pred C-CCceEEEC
Confidence 6 56777774
No 228
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=82.22 E-value=10 Score=30.67 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=47.4
Q ss_pred CCCEEEEEEECCCC-hhhHhcHHHHHHHHHHhC-CCCCCEEEEEEeccCCcchhHHHHHHcCC-CcccEEEEE
Q 028976 116 TGSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSG-DQEAPVIFLKHNVIDEYDEQSEVAERLKI-KVNFSFVLF 185 (201)
Q Consensus 116 ~~k~vlV~Fya~WC-~~C~~l~p~l~~l~~~~~-~~~~~v~~~~vd~~~~~d~~~~l~~~~~V-~~~Ptl~~f 185 (201)
.+++++|.|.-+.| .-|-.+...+.++.+++. ....++.++-|-++-+ .+.++..+.|.. ...|-+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe-rDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE-RDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC-CCCHHHHHHHhcccCCCCeeee
Confidence 79999999987778 469998888888888877 4445565555554333 344677677776 555544443
No 229
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=81.98 E-value=2.7 Score=26.05 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=34.0
Q ss_pred EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 123 ~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
.|+.++|+.|.+..-.+....- .+....++... +...++.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i-------~~~~~~~~~~~--~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL-------PYELVPVDLGE--GEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-------CcEEEEeCCCC--CCCHHHHhcCCCCCCCEEEE
Confidence 5788999999988887776642 24444455311 11124666677889998763
No 230
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=81.09 E-value=2.2 Score=35.42 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=35.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~v 158 (201)
.++|++|+|.+-.|++=+.-.+.|+++.+++.+ ..++.++.|
T Consensus 101 g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI 142 (237)
T PF00837_consen 101 GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYI 142 (237)
T ss_pred CCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehhhH
Confidence 899999999999999999999999999999987 334444433
No 231
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=80.91 E-value=4.9 Score=25.94 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=30.0
Q ss_pred EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 123 ~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
.++.++|+.|++.+-.+....-. +....++. +......+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~-------~~~~~~~~----~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP-------VEQIILQN----DDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC-------eEEEECCC----CchHHHHHhcCCCccCEEE
Confidence 47789999999988777655422 33333443 2222223444556789874
No 232
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=80.89 E-value=13 Score=27.00 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=41.3
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
-.+.+.+.+..+...+-.++ |-.---+ .+.+.+..+.+-..+.. .. .++ .-+|.+-++|+|+.+||
T Consensus 9 P~~~L~~l~~~a~~~~~~~V--~RG~~~g---~~~~t~~~~~~l~~~~~-~~----~~v----~IdP~~F~~y~I~~VPa 74 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVVVV--FRGFPDG---SFKPTAKAIQELLRKDD-PC----PGV----QIDPRLFRQYNITAVPA 74 (113)
T ss_pred CHHHHHHHHHHHHhCCcEEE--EECCCCC---CHHHHHHHHHHHhhccC-CC----cce----eEChhHHhhCCceEcCE
Confidence 34566666666644433333 3222222 55555554444433311 11 233 44678999999999999
Q ss_pred EEEEEC
Q 028976 182 FVLFLT 187 (201)
Q Consensus 182 l~~f~~ 187 (201)
+++-++
T Consensus 75 ~V~~~~ 80 (113)
T PF09673_consen 75 FVVVKD 80 (113)
T ss_pred EEEEcC
Confidence 999887
No 233
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=80.21 E-value=23 Score=26.79 Aligned_cols=80 Identities=6% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHhh----ccCCCEEEEEEECCCC----hhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcch----------
Q 028976 105 EFFKILEKS----KETGSLVVVDFYRTSC----GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE---------- 166 (201)
Q Consensus 105 ~f~~~l~~~----~~~~k~vlV~Fya~WC----~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~---------- 166 (201)
.|++++..+ .++.|+++|..+.|-- ..|+...-. +.+.+-+.. ++.+..-|++.++..
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~---nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQ---NFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHc---CEEEEeeeccchhhhhHHHHhhhhh
Confidence 456666666 7789999999998876 345544211 223333433 688888898663211
Q ss_pred ----hHHHHHHcCCCcccEEEEEECC
Q 028976 167 ----QSEVAERLKIKVNFSFVLFLTF 188 (201)
Q Consensus 167 ----~~~l~~~~~V~~~Ptl~~f~~G 188 (201)
....++.++...+|.+.++-..
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~ 106 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGK 106 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEec
Confidence 2234677889999999988744
No 234
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=80.11 E-value=13 Score=27.85 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=21.8
Q ss_pred chhHHHHHHcCCCcccEEEEEECCc
Q 028976 165 DEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 165 d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
.-+|.+-++|+|+.+|++++.+++.
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCC
Confidence 3467899999999999999999874
No 235
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=79.92 E-value=18 Score=25.34 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=48.9
Q ss_pred eecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 98 ~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
..+.+.+++++.+.. .+..++|=|+..--+ .+...|.+.+..+++ ++.|+...- .++...+++.
T Consensus 3 ~~i~~~~~~e~~~~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~~-------~~~~~~~~~~ 66 (102)
T cd03066 3 EIINSERELQAFENI---EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATFD-------SKVAKKLGLK 66 (102)
T ss_pred eEcCCHHHHHHHhcc---cCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEECc-------HHHHHHcCCC
Confidence 456688888888852 245556666655433 355668888888865 577754332 3667778765
Q ss_pred cccEEEEEEC
Q 028976 178 VNFSFVLFLT 187 (201)
Q Consensus 178 ~~Ptl~~f~~ 187 (201)
.|++++|++
T Consensus 67 -~~~i~l~~~ 75 (102)
T cd03066 67 -MNEVDFYEP 75 (102)
T ss_pred -CCcEEEeCC
Confidence 799999976
No 236
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.40 E-value=3.1 Score=32.38 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=23.4
Q ss_pred hhHHHHHHcCCCcccEEEEEECCcEEEEEee
Q 028976 166 EQSEVAERLKIKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 166 ~~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
++...+.++||.++||+++..++....++.|
T Consensus 157 ~~~~~a~~~gv~g~Ptfvv~~~~~~~~~~~~ 187 (193)
T cd03025 157 EDQKLARELGINGFPTLVLEDDNGEGILLTG 187 (193)
T ss_pred HHHHHHHHcCCCccCEEEEEeCCeEEEecCC
Confidence 4456788999999999999998764444433
No 237
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=75.94 E-value=8.8 Score=25.09 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=32.6
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLF 185 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f 185 (201)
+..|+.++|+.|+..+-.+....-. +.+..+|. ....++ +.-+-..+|++..=
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~-------y~~~~~~~----~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP-------YEVVEVNP----VSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc-------eEEEECCc----hhHHHH-HHhCCCccCEEEEC
Confidence 3457889999999998777655422 33333333 223344 33556789988743
No 238
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=74.96 E-value=3.2 Score=31.02 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.6
Q ss_pred EEEEECCCChhhHhcHHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l 142 (201)
+..|+.|||+.|+.....|++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4468899999999988777654
No 239
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=73.69 E-value=5.6 Score=28.89 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=23.0
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEecc
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~ 161 (201)
..|+.++|+.|+.....+++- ++.+-.+|+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~ 32 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIG 32 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecC
Confidence 358899999999998887763 2555566763
No 240
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=72.33 E-value=31 Score=24.24 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
.++..+.+..- .+...++.|..+. ..|..+...++++++-- + .+.+-..+. +. ..|++
T Consensus 7 ~~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-d---kI~~~~~~~----~~-----------~~P~~ 64 (94)
T cd02974 7 KQQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLS-D---KITLEEDND----DE-----------RKPSF 64 (94)
T ss_pred HHHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-C---ceEEEEecC----CC-----------CCCEE
Confidence 34555555542 4555555666555 89999999898888743 3 465543333 11 37999
Q ss_pred EEEECCcE-EEEEeeee
Q 028976 183 VLFLTFNE-FILMASVI 198 (201)
Q Consensus 183 ~~f~~G~~-v~~i~~~l 198 (201)
.+.++|+. -....|++
T Consensus 65 ~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 65 SINRPGEDTGIRFAGIP 81 (94)
T ss_pred EEecCCCcccEEEEecC
Confidence 99887743 24455543
No 241
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=71.44 E-value=2.2 Score=29.50 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=42.8
Q ss_pred ECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 125 YRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 125 ya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
-+.--+..++....+..+.+.+-+ .++.+--||+ .+++++++.++|-++||++
T Consensus 4 V~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv----~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 4 VAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDV----LEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp ESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEET----TTSHSHHTTTEEECHHHHH
T ss_pred ECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEc----ccCHhHHhHCCeeecceEe
Confidence 344445667777888889887543 4799999999 9999999999999999975
No 242
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.42 E-value=7.6 Score=26.50 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=38.0
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc----------chhHHH--HHHcCCCcccEEEEEECCc
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY----------DEQSEV--AERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~----------d~~~~l--~~~~~V~~~Ptl~~f~~G~ 189 (201)
+.|++.-||.|......++++.-. +-.|+++..- |..+++ .+.+|--|+|.+++ .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~---------yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD---------YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC---------ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 569999999998887777766433 3334543310 233332 57788889999875 4444
Q ss_pred EE
Q 028976 190 EF 191 (201)
Q Consensus 190 ~v 191 (201)
.|
T Consensus 75 vV 76 (85)
T COG4545 75 VV 76 (85)
T ss_pred EE
Confidence 43
No 243
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=71.41 E-value=6.9 Score=25.12 Aligned_cols=52 Identities=8% Similarity=-0.051 Sum_probs=33.7
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
..|+.++|+.|++..-.++...-. +....+|.. ...+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~-------~~~~~v~~~---~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS-------VEIIDVDPD---NPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc-------cEEEEcCCC---CCCHHHHhhCCCCCCCEEE
Confidence 457889999999998777655432 334445541 2334565656667899774
No 244
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=71.14 E-value=9.5 Score=29.12 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=32.4
Q ss_pred CEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC
Q 028976 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (201)
Q Consensus 118 k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~ 177 (201)
..-++.|+.|.||-|......++.. ++.+-.+.. ++-..+.++++|.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~---------Gf~Vk~~~~----~d~~alK~~~gIp 71 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKAN---------GFEVKVVET----DDFLALKRRLGIP 71 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhC---------CcEEEEeec----CcHHHHHHhcCCC
Confidence 3456779999999999987777622 244444554 5566777778774
No 245
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=70.53 E-value=5.9 Score=27.85 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=5.0
Q ss_pred CHHHHHHHHHh
Q 028976 102 TDAEFFKILEK 112 (201)
Q Consensus 102 ~~~~f~~~l~~ 112 (201)
+.++..+.+..
T Consensus 63 ~~~~~~~~~~~ 73 (114)
T cd02967 63 EKAEHQRFLKK 73 (114)
T ss_pred CHHHHHHHHHH
Confidence 33445555543
No 246
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=68.61 E-value=0.74 Score=33.43 Aligned_cols=44 Identities=2% Similarity=-0.168 Sum_probs=34.4
Q ss_pred CCCC---CCCCCCcccccccccccccccccccccCCCCCCccccccccc
Q 028976 18 ADGK---FSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLASL 63 (201)
Q Consensus 18 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~ 63 (201)
.|++ ||+++.|++.+.+... +....|| ++....|.+++.+++.+
T Consensus 39 vAk~~~~~kgki~Fv~~d~~~~~-~~~~~fg-l~~~~~P~i~i~~~~~~ 85 (111)
T cd03072 39 VARQLISEKGAINFLTADGDKFR-HPLLHLG-KTPADLPVIAIDSFRHM 85 (111)
T ss_pred HHHHHHhcCceEEEEEEechHhh-hHHHHcC-CCHhHCCEEEEEcchhc
Confidence 4677 9999999999999443 3788888 66667898888887653
No 247
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=68.46 E-value=1 Score=32.78 Aligned_cols=43 Identities=7% Similarity=-0.195 Sum_probs=32.2
Q ss_pred CCCCCCC-CCCCcccccccccccccccccccccCCC--CCCccccccc
Q 028976 17 NADGKFS-SKVPCMVTSLHRDRTCAKSFCMRTRNRI--PFESKSTGLA 61 (201)
Q Consensus 17 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~l~ 61 (201)
..|++|| +++.|+++|.+... +....|| ++... .|..++..++
T Consensus 42 ~vAk~fk~gki~Fv~~D~~~~~-~~l~~fg-l~~~~~~~P~~~i~~~~ 87 (111)
T cd03073 42 KVAKDFPDRKLNFAVADKEDFS-HELEEFG-LDFSGGEKPVVAIRTAK 87 (111)
T ss_pred HHHHHCcCCeEEEEEEcHHHHH-HHHHHcC-CCcccCCCCEEEEEeCC
Confidence 4688999 79999999999433 3777888 66555 8887776643
No 248
>PRK12559 transcriptional regulator Spx; Provisional
Probab=68.37 E-value=5.6 Score=29.78 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.5
Q ss_pred EEEEECCCChhhHhcHHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l 142 (201)
+..|+.|+|+.|+.....|++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4568899999999987766654
No 249
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=68.15 E-value=9.8 Score=31.53 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=38.3
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCC-CCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-EAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~-~~~v~~~~vd~ 160 (201)
.|..+||-+-..+|..|..-+..|+.|..++... ..+|.|+-||-
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 7889999999999999999999999998777542 34799999995
No 250
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=67.17 E-value=17 Score=23.15 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=34.0
Q ss_pred EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 123 ~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
.|+.++|+.|++..-.++...-. +....+|.........++.+...-..+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP-------YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-------cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 57889999999887777665432 34445554221123345555555668999863
No 251
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=66.16 E-value=56 Score=27.38 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC-CCcccEEEEEEC
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK-IKVNFSFVLFLT 187 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~-V~~~Ptl~~f~~ 187 (201)
.+|+.++...+-||+.|....=.|-.+-.+++. +.+...-. +. .+ --.+|||.|..-
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn----~~l~~~~S-~~----------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN----FSLEYHYS-DP----------YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC----eeeEEeec-Cc----------ccCCCCCCeEEEecC
Confidence 899999999999999999887665555555654 53322222 11 12 247899888764
No 252
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=65.81 E-value=34 Score=22.22 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=37.5
Q ss_pred EECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 124 Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
++.+||+.|+++.=.++...- .+.+..++. . +...++.+...-..+|++. .+|.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i-------~~~~~~v~~--~-~~~~~~~~~~p~~~vPvL~--~~g~ 55 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI-------PYELVPVDP--E-EKRPEFLKLNPKGKVPVLV--DDGE 55 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE-------EEEEEEEBT--T-STSHHHHHHSTTSBSSEEE--ETTE
T ss_pred CCcCCChHHHHHHHHHHHcCC-------eEEEeccCc--c-cchhHHHhhcccccceEEE--ECCE
Confidence 678999999999877665532 244555554 1 3356777777888999997 5554
No 253
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=65.76 E-value=6.9 Score=28.32 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.3
Q ss_pred EEEECCCChhhHhcHHHHHHH
Q 028976 122 VDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l 142 (201)
..|+.++|+.|+.....|++.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC
Confidence 457899999999988887764
No 254
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=65.67 E-value=47 Score=30.44 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
.++..+.+.. -.++|-+.++.+-|..|..+...++++++-- + ++.+-..+. + ...|++
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~---~i~~~~~~~----~-----------~~~p~~ 64 (517)
T PRK15317 7 KTQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLS-D---KITVEEDSL----D-----------VRKPSF 64 (517)
T ss_pred HHHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-C---ceEEEEccC----C-----------CCCCEE
Confidence 3556666654 4556656666668999999999999998753 3 465533222 1 347999
Q ss_pred EEEECCcEE-EEEeee
Q 028976 183 VLFLTFNEF-ILMASV 197 (201)
Q Consensus 183 ~~f~~G~~v-~~i~~~ 197 (201)
.+.++|+.. ....|+
T Consensus 65 ~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 65 SITRPGEDTGVRFAGI 80 (517)
T ss_pred EEEcCCccceEEEEec
Confidence 998876543 334444
No 255
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=64.81 E-value=25 Score=22.98 Aligned_cols=59 Identities=7% Similarity=-0.199 Sum_probs=37.3
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCc
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
..|+.+.|+.|++..-.+.+..- ++.+..+|........+++.+--.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl-------~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL-------RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC-------CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 45788899999888765655542 34555666533212345676666667899995 4553
No 256
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=59.63 E-value=9.9 Score=28.46 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.3
Q ss_pred EEEEECCCChhhHhcHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSK 141 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~ 141 (201)
+..|+.|+|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 345788999999998766654
No 257
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.35 E-value=15 Score=28.37 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.4
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhC
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~ 147 (201)
+..|+-+.|+.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 557889999999999999999999984
No 258
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=58.29 E-value=33 Score=24.84 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccC----CcchhHHHHHHcCCCcccEEEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EYDEQSEVAERLKIKVNFSFVLFL 186 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~----~~d~~~~l~~~~~V~~~Ptl~~f~ 186 (201)
.++.+||.=-|+-|+.-. -...|++|.+++++ .++.++.+=|.+ +...+.++..-..-+.-|++-+|.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~--~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ 91 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD--KGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFE 91 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG--GTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc--CCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceE
Confidence 899999999999999988 77789999999975 368888877633 223444554333333334555554
No 259
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=58.19 E-value=28 Score=23.60 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=33.9
Q ss_pred EEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
..|+.+.|+.|++..-.+....- .+.+..+|.. ....++.+......+|++..
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~~gl-------~~~~~~v~~~---~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAAKNI-------PHEVININLK---DKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEeCCCCchHHHHHHHHHHcCC-------CCeEEEeCCC---CCcHHHHhhCCCCCcCEEEE
Confidence 34678889999988776665432 2445555641 12234656666778999873
No 260
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.11 E-value=17 Score=29.53 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCEEEEEEECCCChhhHhcHHHHHHHHHHhCC
Q 028976 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (201)
Q Consensus 117 ~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~ 148 (201)
.+..++.|.-.-|++|+...|.+.+.....++
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 37788888888899998888887775554443
No 261
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=57.41 E-value=82 Score=28.86 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEE
Q 028976 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSF 182 (201)
Q Consensus 103 ~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl 182 (201)
.+++.+.+.. -.++|-+.++.+-|..|..+...++++++-- + .+.+...+. + ....|++
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~---ki~~~~~~~----~----------~~~~p~~ 65 (515)
T TIGR03140 7 LAQLKSYLAS---LENPVTLVLSAGSHEKSKELLELLDEIASLS-D---KISLTQNTA----D----------TLRKPSF 65 (515)
T ss_pred HHHHHHHHHh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-C---CeEEEEecC----C----------cCCCCeE
Confidence 3555666654 3445545455447999999999999888753 3 466644333 1 1346999
Q ss_pred EEEECCcEE-EEEeee
Q 028976 183 VLFLTFNEF-ILMASV 197 (201)
Q Consensus 183 ~~f~~G~~v-~~i~~~ 197 (201)
.+.++|+.. ....|+
T Consensus 66 ~~~~~~~~~~i~f~g~ 81 (515)
T TIGR03140 66 TILRDGADTGIRFAGI 81 (515)
T ss_pred EEecCCcccceEEEec
Confidence 998776542 344444
No 262
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=56.37 E-value=14 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=17.7
Q ss_pred hHHHHHHcCCCcccEEEEEECCcEE
Q 028976 167 QSEVAERLKIKVNFSFVLFLTFNEF 191 (201)
Q Consensus 167 ~~~l~~~~~V~~~Ptl~~f~~G~~v 191 (201)
....+++.+|.++||+++ +|+.+
T Consensus 125 ~~~~~~~~~i~~tPt~~i--nG~~~ 147 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI--NGKYV 147 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE--TTCEE
T ss_pred HHHHHHHcCCccccEEEE--CCEEe
Confidence 445689999999999998 77664
No 263
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=54.51 E-value=14 Score=28.55 Aligned_cols=22 Identities=18% Similarity=-0.004 Sum_probs=17.3
Q ss_pred hhHHHHHHcCCCcccEEEEEECCc
Q 028976 166 EQSEVAERLKIKVNFSFVLFLTFN 189 (201)
Q Consensus 166 ~~~~l~~~~~V~~~Ptl~~f~~G~ 189 (201)
++...+.++||.++||+++ +|+
T Consensus 155 ~~~~~a~~~gi~gvPtfvv--~g~ 176 (192)
T cd03022 155 ANTEEAIARGVFGVPTFVV--DGE 176 (192)
T ss_pred HHHHHHHHcCCCcCCeEEE--CCe
Confidence 3456688999999999998 554
No 264
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.06 E-value=13 Score=30.07 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=23.8
Q ss_pred hHHHHHHcCCCcccEEEEEECCcEEEEEee
Q 028976 167 QSEVAERLKIKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 167 ~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
...+++++++.++|||++-++|+--.+-.|
T Consensus 163 ~r~l~~rlg~~GfPTl~le~ng~~~~l~~g 192 (212)
T COG3531 163 SRRLMQRLGAAGFPTLALERNGTMYVLGTG 192 (212)
T ss_pred HHHHHHHhccCCCCeeeeeeCCceEeccCC
Confidence 356789999999999999998876554444
No 265
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.01 E-value=52 Score=23.74 Aligned_cols=63 Identities=22% Similarity=0.134 Sum_probs=38.3
Q ss_pred CCCEEEEEE----ECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC-CCcccEEE-EEECCc
Q 028976 116 TGSLVVVDF----YRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK-IKVNFSFV-LFLTFN 189 (201)
Q Consensus 116 ~~k~vlV~F----ya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~-V~~~Ptl~-~f~~G~ 189 (201)
+..+|++.. -.|-||...+....+..... +.|..+|+ =.++++-+... ...+||+= +|-+|+
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~--------v~~~~vnV----L~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGV--------VDFAYVDV----LQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCC--------cceeEEee----ccCHHHHhccHhhcCCCCCceeeECCE
Confidence 344555544 25788888888777765431 56888898 44455543332 24678775 666775
Q ss_pred E
Q 028976 190 E 190 (201)
Q Consensus 190 ~ 190 (201)
-
T Consensus 81 f 81 (105)
T COG0278 81 F 81 (105)
T ss_pred E
Confidence 3
No 266
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.95 E-value=1e+02 Score=25.42 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=38.7
Q ss_pred CCCEEEEEEECCCC-hh-hHhcHHHHHHHHHHhCCCCC-CEEEEEEeccCCcchhHHHHHHcCCCcccE
Q 028976 116 TGSLVVVDFYRTSC-GS-CKYIEQGFSKLCKGSGDQEA-PVIFLKHNVIDEYDEQSEVAERLKIKVNFS 181 (201)
Q Consensus 116 ~~k~vlV~Fya~WC-~~-C~~l~p~l~~l~~~~~~~~~-~v~~~~vd~~~~~d~~~~l~~~~~V~~~Pt 181 (201)
-+++|-|.+|.+-- +. =....+.+.++-++|..... ++.+-.+|-..+.+...+.+.++||...+.
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 45577777766542 11 24444455555555544334 799999997333344445566699888443
No 267
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=51.92 E-value=4 Score=30.44 Aligned_cols=47 Identities=11% Similarity=-0.108 Sum_probs=34.0
Q ss_pred CCCCCCCCC-CCcccccccccccccccccccccCCCCCCccccccccccc
Q 028976 17 NADGKFSSK-VPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGLASLKS 65 (201)
Q Consensus 17 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 65 (201)
..|++||++ +.|++++..... .....|+ ++....|...+.+++-+++
T Consensus 48 ~vAk~~kgk~i~Fv~vd~~~~~-~~~~~fg-l~~~~~P~v~i~~~~~~KY 95 (130)
T cd02983 48 SVAEKFKKKPWGWLWTEAGAQL-DLEEALN-IGGFGYPAMVAINFRKMKF 95 (130)
T ss_pred HHHHHhcCCcEEEEEEeCcccH-HHHHHcC-CCccCCCEEEEEecccCcc
Confidence 467889999 999999999543 3777777 5666788776666543333
No 268
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=51.84 E-value=13 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred hhHHHHHHcCCCcccEEEE
Q 028976 166 EQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 166 ~~~~l~~~~~V~~~Ptl~~ 184 (201)
.+..+++++||.++||+++
T Consensus 117 ~~~~~~~~~gi~gtPt~~v 135 (154)
T cd03023 117 KNRQLARALGITGTPAFII 135 (154)
T ss_pred HHHHHHHHcCCCcCCeEEE
Confidence 4457789999999999876
No 269
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=49.81 E-value=39 Score=23.90 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=36.8
Q ss_pred EECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCC--cccEEEE-EECCc
Q 028976 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK--VNFSFVL-FLTFN 189 (201)
Q Consensus 124 Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~--~~Ptl~~-f~~G~ 189 (201)
||-.+|+-|......+.+... .+.+.|+-+.- +...++.+.+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-----~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-----GGRLRFVDIQS----EPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-----CCCEEEEECCC----hhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788999999999998887732 23577776532 3444555667765 3444444 45665
No 270
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=49.44 E-value=20 Score=26.08 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=17.1
Q ss_pred EEEEECCCChhhHhcHHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l 142 (201)
+..|+.|.|+.|+.....|++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3468899999999887766654
No 271
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=44.12 E-value=25 Score=28.56 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=22.5
Q ss_pred hhHHHHHHcCCCcccEEEEEECCcEEEEEee
Q 028976 166 EQSEVAERLKIKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 166 ~~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
-+|.+-++|+|+.+|+|++.-. ...+.+.|
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~-~~yD~I~G 179 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCS-QGYDIIRG 179 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcC-CCCCEEEe
Confidence 3678999999999999999744 33444544
No 272
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=41.62 E-value=78 Score=24.69 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.++.+||.=.|+-||---+ ...|+.|.++|++ .++.++.+-|
T Consensus 24 ~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~--~Gf~VLgFPc 65 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKD--KGFEVLGFPC 65 (162)
T ss_pred CCcEEEEEEcccccCCcHh-HHHHHHHHHHHhh--CCcEEEeccc
Confidence 8999999999999997663 3457888888886 3677777766
No 273
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=41.31 E-value=1e+02 Score=24.54 Aligned_cols=79 Identities=24% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC---------------cchhHHHHHHcCCCcc
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------YDEQSEVAERLKIKVN 179 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~---------------~d~~~~l~~~~~V~~~ 179 (201)
.+++|++.|| +..-+.|-...=-|.+-+++++.....|.=+..|-.+. +|...++-..+|+..-
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~ 168 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKD 168 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCC
Confidence 4568888888 44455565544444443443332111232222222110 1556677788888764
Q ss_pred c-------EEEEEECCcEEEEE
Q 028976 180 F-------SFVLFLTFNEFILM 194 (201)
Q Consensus 180 P-------tl~~f~~G~~v~~i 194 (201)
| .-.+|.+|+.+.++
T Consensus 169 p~gg~~~Rsh~if~kg~~k~~i 190 (211)
T KOG0855|consen 169 PFGGLPGRSHYIFDKGGVKQLI 190 (211)
T ss_pred CCCCcccceEEEEecCCeEEEE
Confidence 4 34456655444433
No 274
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.11 E-value=36 Score=24.90 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=32.0
Q ss_pred CChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcC--CCcccEEEEEE
Q 028976 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--IKVNFSFVLFL 186 (201)
Q Consensus 128 WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~--V~~~Ptl~~f~ 186 (201)
.|++|..+...+...-. + ...+.+.+|+...+- .++....| =++.|++++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~-l---~~~ldV~rV~f~RPR---~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-L---RERLDVRRVDFPRPR---QAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChh-h---hhcccEEEeCCCCch---HHHHHHhChhccCCCEEEeCC
Confidence 39999998887654322 2 235778889984431 12323333 37899988754
No 275
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=38.40 E-value=83 Score=26.64 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCCEEEEEEECCCChh-hHhcHHHHHHHHHHhCCCCCC---EEEEEEe
Q 028976 116 TGSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQEAP---VIFLKHN 159 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~-C~~l~p~l~~l~~~~~~~~~~---v~~~~vd 159 (201)
.+|.+|+.|.-+-|+. |=.....+.++..++.+...- =.|+.+|
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD 185 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence 7999999999999974 666555555555544431111 2567777
No 276
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=62 Score=25.83 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=40.9
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCC-----------------------cchhHHHH
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVA 171 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~-----------------------~d~~~~l~ 171 (201)
.++.|++.|| ..+---|=-.--.|-+.++++.+.+-.|..+.+|. .. +|.+.+++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS-~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDS-VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccc-hhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 7899999998 55666664444446666666666545566666652 21 17788999
Q ss_pred HHcCCC
Q 028976 172 ERLKIK 177 (201)
Q Consensus 172 ~~~~V~ 177 (201)
++|||-
T Consensus 111 rdyGvL 116 (196)
T KOG0852|consen 111 RDYGVL 116 (196)
T ss_pred HhcCce
Confidence 999983
No 277
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=36.74 E-value=1.1e+02 Score=19.40 Aligned_cols=56 Identities=4% Similarity=-0.088 Sum_probs=34.1
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
+..|+.+.|+.|++..-.++...-. +....++........+++.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~-------~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD-------YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC-------cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3445677799999988777765432 3444455421112234566667778899875
No 278
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=36.29 E-value=1.1e+02 Score=24.21 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=37.3
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEec
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (201)
.++.+||.=-|+-||--..-...|..|.++|++. ++.++..-|
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPC 75 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPC 75 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEecc
Confidence 8999999999999999998888999999999763 677777766
No 279
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=36.16 E-value=24 Score=32.99 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=53.1
Q ss_pred CHHHHHHHHHhhccCCCEEEEEEECCCChhhHhcHHH-H--HHHHHHhCCCCCCEEEEEEeccCCcchhHHHHH------
Q 028976 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE------ 172 (201)
Q Consensus 102 ~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~~l~p~-l--~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~------ 172 (201)
..+.|+.+-. ++|++++-..-+-|..|..|... | ++.++.+.+ +++-++||- ++-+++-+
T Consensus 101 gqeaf~kar~----enkpifLsvgystchwchvmekesfeneet~~ilne---nfv~ikVDR----EERPDVDK~YM~Fv 169 (786)
T KOG2244|consen 101 GQEAFNKARA----ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE---NFVKIKVDR----EERPDVDKLYMAFV 169 (786)
T ss_pred hHHHHHHHHh----cCCCEEEEcccccchheeeeecccccCHHHHHHHhh---hhhhhccCh----hhcCchHHHHHHHH
Confidence 5677777766 89999999988889999999886 5 447777765 566666665 55555433
Q ss_pred --HcCCCcccEEEEEEC
Q 028976 173 --RLKIKVNFSFVLFLT 187 (201)
Q Consensus 173 --~~~V~~~Ptl~~f~~ 187 (201)
..|--|+|--++.-.
T Consensus 170 ~assg~GGWPmsV~LTP 186 (786)
T KOG2244|consen 170 VASSGGGGWPMSVFLTP 186 (786)
T ss_pred HhccCCCCCceeEEeCC
Confidence 445567886666544
No 280
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.46 E-value=35 Score=26.48 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.8
Q ss_pred chhHHHHHHcCCCcccEEEE
Q 028976 165 DEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 165 d~~~~l~~~~~V~~~Ptl~~ 184 (201)
.++...+.+.||.++||+++
T Consensus 162 ~~~~~~a~~~gv~G~Pt~vv 181 (201)
T cd03024 162 RADEARARQLGISGVPFFVF 181 (201)
T ss_pred HHHHHHHHHCCCCcCCEEEE
Confidence 44567788999999999998
No 281
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=33.35 E-value=34 Score=24.71 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=17.2
Q ss_pred EEEECCCChhhHhcHHHHHHH
Q 028976 122 VDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l 142 (201)
..|+.|-|+.|+.....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK 22 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 358899999999988877764
No 282
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=30.86 E-value=46 Score=23.87 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=16.7
Q ss_pred EEEECCCChhhHhcHHHHHHH
Q 028976 122 VDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 122 V~Fya~WC~~C~~l~p~l~~l 142 (201)
..|+.|-|+.|+.....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 458899999999987666644
No 283
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=30.31 E-value=57 Score=23.90 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEEECCCChhhHhcHHHHHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKLCKG 145 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l~~~ 145 (201)
+..|+.|-|+.|+.....+++-.-+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~ 27 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIE 27 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 4458899999999998888765433
No 284
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=28.37 E-value=1.3e+02 Score=24.25 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 139 FSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 139 l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
+.++.+.+.. .+-| |....|.++|+|..+|.++. ..|+.
T Consensus 158 ~~~l~~~l~~---~vYf---------dQ~g~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 158 VNELEKRLDS---RIYF---------DQHGKLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred HHHHHHHhCC---ceEE---------cCCchHhhccCceeeceEEE-ecCCE
Confidence 5666666643 2322 55668999999999999885 55554
No 285
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.72 E-value=73 Score=25.65 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=48.0
Q ss_pred CCCEEEEEEE-CCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCc------------------------chhHHH
Q 028976 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------------DEQSEV 170 (201)
Q Consensus 116 ~~k~vlV~Fy-a~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~------------------------d~~~~l 170 (201)
-+|.+++.|| +.--.-|=-....|.+..+++.+. ++.++.+.++... |.+.++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~v 109 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEI 109 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhH
Confidence 3588888887 677777877888888888888764 4444444432211 567788
Q ss_pred HHHcCCCc------ccEEEEEECCcEEE
Q 028976 171 AERLKIKV------NFSFVLFLTFNEFI 192 (201)
Q Consensus 171 ~~~~~V~~------~Ptl~~f~~G~~v~ 192 (201)
++.||+-. +=.+.+++..+.+.
T Consensus 110 s~~ygvl~~~~g~a~R~~FIIDp~g~ir 137 (194)
T COG0450 110 ARAYGVLHPEEGLALRGTFIIDPDGVIR 137 (194)
T ss_pred HHHcCCcccCCCcceeEEEEECCCCeEE
Confidence 88888853 22344555555544
No 286
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=25.39 E-value=3.9e+02 Score=22.05 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=48.4
Q ss_pred CCCEEEEEEECCCChhhH-----------------hcHHHHHHHHHHhCCCCCCEEEEEEeccCC--cchhHHHHHHcCC
Q 028976 116 TGSLVVVDFYRTSCGSCK-----------------YIEQGFSKLCKGSGDQEAPVIFLKHNVIDE--YDEQSEVAERLKI 176 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~-----------------~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~--~d~~~~l~~~~~V 176 (201)
+++++.|..++|-|++.. .+...++++...|-.....+.++-+|+... ..+..++++.+.-
T Consensus 111 s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~ 190 (240)
T smart00053 111 SPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP 190 (240)
T ss_pred cCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH
Confidence 467889999999886532 333456666665533234588888876331 1223478899999
Q ss_pred CcccEEEEEEC
Q 028976 177 KVNFSFVLFLT 187 (201)
Q Consensus 177 ~~~Ptl~~f~~ 187 (201)
.+.||+.++.+
T Consensus 191 ~~~rti~ViTK 201 (240)
T smart00053 191 QGERTIGVITK 201 (240)
T ss_pred cCCcEEEEEEC
Confidence 99999988875
No 287
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.15 E-value=64 Score=25.62 Aligned_cols=20 Identities=10% Similarity=-0.202 Sum_probs=15.7
Q ss_pred hHHHHHHcCCCcccEEEEEE
Q 028976 167 QSEVAERLKIKVNFSFVLFL 186 (201)
Q Consensus 167 ~~~l~~~~~V~~~Ptl~~f~ 186 (201)
+.+-+.+.||.|+|+|++=.
T Consensus 168 ~~~~A~~~Gv~GVP~fvv~~ 187 (209)
T cd03021 168 NTDEALKYGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHHcCCCCCCEEEEEc
Confidence 44557888999999999844
No 288
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=67 Score=29.29 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=20.9
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCChhhH
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCK 133 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~~C~ 133 (201)
+..+.+-++|..+|. +++.++ ||||+.-.
T Consensus 467 ~~~v~~~~eF~~aL~----~k~iil----aPwcg~~e 495 (551)
T KOG4163|consen 467 IVKVNTWEEFVKALD----QKKIIL----APWCGEIE 495 (551)
T ss_pred eeeeeeHHHHHHHhc----cCCEEE----ccccCcHH
Confidence 456678888988886 566555 89997543
No 289
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=24.17 E-value=2.9e+02 Score=20.31 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=49.6
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHH----HHcCCC-cccEEEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA----ERLKIK-VNFSFVLFL 186 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~----~~~~V~-~~Ptl~~f~ 186 (201)
-+...+|-|--+--+.-.++.+.+.++++++.+ ..++.|+.||= |+-+-+. +-|+|. .-|.+=+..
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDP----D~FPllv~yWektF~IDl~~PqIGVV~ 89 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDP----DDFPLLVPYWEKTFGIDLFRPQIGVVN 89 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECC----ccCchhhHHHHhhcCcccCCCceeeEe
Confidence 356777889999999999999999999999886 67899999997 6666553 445554 235554443
No 290
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=23.45 E-value=52 Score=28.13 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=18.3
Q ss_pred CCCEEEEEE---ECCCChhhHhcHHH
Q 028976 116 TGSLVVVDF---YRTSCGSCKYIEQG 138 (201)
Q Consensus 116 ~~k~vlV~F---ya~WC~~C~~l~p~ 138 (201)
.....+|-| |.=||..|+-....
T Consensus 39 ~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 39 DQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred ccceEEEEEecccchhhccHHHhhhc
Confidence 567778888 77799999987654
No 291
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=23.33 E-value=92 Score=23.83 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=20.9
Q ss_pred hhHHHHHHcCCCcccEEEEEECCcEEEEEee
Q 028976 166 EQSEVAERLKIKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 166 ~~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
-..+|.+.|+++++| ++.|.+|..+.|
T Consensus 32 LSkeLr~k~~~Rs~~----IkkGD~V~Vi~G 58 (143)
T PTZ00194 32 LSKELRAKYNVRSMP----VRKDDEVMVVRG 58 (143)
T ss_pred cCHHHHHHhCCccce----eecCCEEEEecC
Confidence 456899999999986 577777776665
No 292
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=71 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.1
Q ss_pred CEEEEEEECCCChhhHhcHHHHHHHHH
Q 028976 118 SLVVVDFYRTSCGSCKYIEQGFSKLCK 144 (201)
Q Consensus 118 k~vlV~Fya~WC~~C~~l~p~l~~l~~ 144 (201)
....+.|..++|+.|++....+.....
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 344555689999999998887766655
No 293
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=22.21 E-value=1e+02 Score=24.64 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHhhccCCCEEEEEEECCCCh--hhH
Q 028976 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG--SCK 133 (201)
Q Consensus 97 v~~i~~~~~f~~~l~~~~~~~k~vlV~Fya~WC~--~C~ 133 (201)
+..+.+.++|.+.+. +++.|+ +|||+ .|.
T Consensus 128 ~~~~~~~~e~~~~~~----~~~~v~----~~wcg~~~~e 158 (202)
T cd00862 128 TRIVDTWEEFKEALN----EKGIVL----APWCGEEECE 158 (202)
T ss_pred eEeeCCHHHHHHHHh----cCCEEE----EEecCCHHHH
Confidence 445668899999886 455554 69997 555
No 294
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.70 E-value=2.2e+02 Score=17.87 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=34.3
Q ss_pred EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEEEECCcE
Q 028976 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVLFLTFNE 190 (201)
Q Consensus 123 ~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~f~~G~~ 190 (201)
.|+.+.|+.|.+..-.+....... .+....+|.. ...+++.+......+|++.. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-----~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-----DVELVLVNPW---SDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-----CcEEEEcCcc---cCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 467888999998876665522111 3555555531 23345555556678997753 24433
No 295
>PRK10026 arsenate reductase; Provisional
Probab=21.37 E-value=1.1e+02 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=17.8
Q ss_pred EEEEECCCChhhHhcHHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l 142 (201)
+..|+.|.|+.|+.....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4457899999999998877754
No 296
>PRK10853 putative reductase; Provisional
Probab=21.25 E-value=97 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=17.6
Q ss_pred EEEEECCCChhhHhcHHHHHHH
Q 028976 121 VVDFYRTSCGSCKYIEQGFSKL 142 (201)
Q Consensus 121 lV~Fya~WC~~C~~l~p~l~~l 142 (201)
+..|+.|-|+.|+.....|++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 3467899999999998877754
No 297
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.76 E-value=4.6e+02 Score=22.69 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=38.8
Q ss_pred CCCEEEEEEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEEE
Q 028976 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFVL 184 (201)
Q Consensus 116 ~~k~vlV~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~~ 184 (201)
....+||++. ||.|+.....++.+...- ..+.++.+|++. +.-...++++.-..+|.+.+
T Consensus 75 ~~~~~lIELG---sG~~~Kt~~LL~aL~~~~----~~~~Y~plDIS~--~~L~~a~~~L~~~~~p~l~v 134 (319)
T TIGR03439 75 PSGSMLVELG---SGNLRKVGILLEALERQK----KSVDYYALDVSR--SELQRTLAELPLGNFSHVRC 134 (319)
T ss_pred CCCCEEEEEC---CCchHHHHHHHHHHHhcC----CCceEEEEECCH--HHHHHHHHhhhhccCCCeEE
Confidence 3445788886 788999888888886432 258899999933 22333445554445665555
No 298
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=20.76 E-value=5.4e+02 Score=23.64 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHHHHhhccCCCEEEEEEECCCC-hhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCccc--E
Q 028976 105 EFFKILEKSKETGSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNF--S 181 (201)
Q Consensus 105 ~f~~~l~~~~~~~k~vlV~Fya~WC-~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~P--t 181 (201)
+|++........-.+++|.|+.+-- ..=..+...+.++..+++. .++.++.+.- . .-....+-+.++..+| +
T Consensus 269 ~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~--~~i~~i~~~~-~--~fsr~~~Ld~g~~~~~~d~ 343 (499)
T PF05679_consen 269 NFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPF--SRIKWISVKT-G--EFSRGAALDVGAKKFPPDS 343 (499)
T ss_pred HHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCc--cceEEEEecC-C--CccHHHHHHhhcccCCCCc
Confidence 5555544444456678888887432 2222344456677766643 4677877771 1 3333444555555544 4
Q ss_pred EEEE
Q 028976 182 FVLF 185 (201)
Q Consensus 182 l~~f 185 (201)
++|+
T Consensus 344 L~f~ 347 (499)
T PF05679_consen 344 LLFF 347 (499)
T ss_pred EEEE
Confidence 4444
No 299
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=20.51 E-value=85 Score=20.52 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=13.8
Q ss_pred HHHHHHHHhhccCCCEEEEEEECCCChh
Q 028976 104 AEFFKILEKSKETGSLVVVDFYRTSCGS 131 (201)
Q Consensus 104 ~~f~~~l~~~~~~~k~vlV~Fya~WC~~ 131 (201)
++|.+.+. +++.|+ +|||+.
T Consensus 2 eE~k~~i~----~gg~v~----~pwcg~ 21 (68)
T PF09180_consen 2 EEFKEAIE----KGGFVL----VPWCGD 21 (68)
T ss_dssp HHHHHHHH----TSSEEE----EEES-S
T ss_pred hHHHHHHh----CCCEEE----EEccCC
Confidence 57888884 677766 488887
No 300
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=20.42 E-value=1.3e+02 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=21.6
Q ss_pred chhHHHHHHcCCCcccEEEEEECCcEEEEEee
Q 028976 165 DEQSEVAERLKIKVNFSFVLFLTFNEFILMAS 196 (201)
Q Consensus 165 d~~~~l~~~~~V~~~Ptl~~f~~G~~v~~i~~ 196 (201)
.-..+|.++|+++.+| ++.|.+|..++|
T Consensus 30 ~LSkeLr~~y~ir~~~----IkkGD~V~VisG 57 (120)
T PRK01191 30 PLSKELREKYGIRSLP----VRKGDTVKVMRG 57 (120)
T ss_pred ccCHHHHHHhCCccce----EeCCCEEEEeec
Confidence 3456899999999986 567778777766
No 301
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=20.22 E-value=2.4e+02 Score=17.85 Aligned_cols=54 Identities=6% Similarity=-0.168 Sum_probs=33.9
Q ss_pred EEECCCChhhHhcHHHHHHHHHHhCCCCCCEEEEEEeccCCcchhHHHHHHcCCCcccEEE
Q 028976 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKVNFSFV 183 (201)
Q Consensus 123 ~Fya~WC~~C~~l~p~l~~l~~~~~~~~~~v~~~~vd~~~~~d~~~~l~~~~~V~~~Ptl~ 183 (201)
.|+.+-++.|+.+.-.++...-. +....+|..+.....+++.+..-...+|++.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~-------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP-------FEECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC-------cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 46778899998887766665432 4445566422212234666666777899886
Done!