Query 028978
Match_columns 201
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10457 MENTAL: Cholesterol-c 99.5 1.2E-14 2.7E-19 121.6 3.7 105 63-179 35-140 (171)
2 PF10160 Tmemb_40: Predicted m 39.9 50 0.0011 30.2 4.5 91 83-176 91-186 (261)
3 PF01528 Herpes_glycop: Herpes 34.8 1.5E+02 0.0032 28.2 6.9 92 78-176 238-338 (374)
4 PF04995 CcmD: Heme exporter p 30.3 51 0.0011 21.9 2.3 21 106-126 3-23 (46)
5 COG3104 PTR2 Dipeptide/tripept 25.4 2.3E+02 0.0051 28.1 6.7 86 65-168 28-113 (498)
6 PF15108 TMEM37: Voltage-depen 24.4 50 0.0011 28.9 1.8 18 85-102 18-43 (184)
7 PF04783 DUF630: Protein of un 24.0 32 0.00068 25.1 0.5 11 169-179 16-26 (60)
8 PF13720 Acetyltransf_11: Udp 23.8 84 0.0018 23.3 2.7 19 2-22 27-45 (83)
9 PF11298 DUF3099: Protein of u 21.0 3E+02 0.0064 20.6 5.1 40 7-49 11-57 (73)
10 PF07172 GRP: Glycine rich pro 20.3 1.1E+02 0.0024 23.6 2.8 20 18-37 4-23 (95)
11 COG3114 CcmD Heme exporter pro 20.3 99 0.0022 23.3 2.4 22 106-127 15-36 (67)
12 PF09068 EF-hand_2: EF hand; 20.2 73 0.0016 25.4 1.9 24 164-187 18-44 (127)
No 1
>PF10457 MENTAL: Cholesterol-capturing domain; InterPro: IPR019498 The following proteins share a conserved region called the MENTAL (MLN64 N-terminal) domain, composed of four transmembrane helices with three short intervening loops [, , ]: Animal MLN64 (metastatic lymph node 64), a late endosomal membrane protein containing a carboxyl-terminal cholesterol binding START domain (IPR002913 from INTERPRO). It is probably involved in intracellular cholesterol transport. Mammalian MENTHO (MLN64 N-terminal domain homologue), a late endosomal protein containing only the MENTAL domain. It is probably involved in cellular cholesterol homoeostasis. The ~170-amino acid MENTAL domain mediates MLN64 and MENTHO homo- and hetero- interactions, targets both proteins to late endosomes and binds cholesterol. The MENTAL domain might serve to maintain cholesterol at the membrane of late endosomes prior to its shuttle to cytoplasmic acceptor(s) through the START domain.
Probab=99.49 E-value=1.2e-14 Score=121.59 Aligned_cols=105 Identities=33% Similarity=0.444 Sum_probs=88.8
Q ss_pred hhhhhhcccCcccccccchhHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhHHHHHHHHhhhceecccccccchhh
Q 028978 63 STLSSHFNDYDFRYSLVDIPLISIIRSAVIICVYGLCDGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVADIDRGVY 142 (201)
Q Consensus 63 ~~~~~~~~~Y~FrsSLvDIPlvSi~RS~~IlCvY~~Cdgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~~~~~~~ 142 (201)
..+..|..+|+||+||.||++++++|.++++++|++| ++.|+++.++||++|. .|+.+|+. +|. +...++.
T Consensus 35 ~~l~~ei~~Y~~~~SLFDivllA~~Rf~vLil~Ya~~---rl~hw~~iaitT~~S~---afli~Kv~-~~~-~~~s~~~- 105 (171)
T PF10457_consen 35 SALQNEINHYDFKTSLFDIVLLAIFRFLVLILFYALL---RLRHWWPIAITTLVSC---AFLIVKVF-FFD-STSSQNA- 105 (171)
T ss_pred HHHHHHHhheehhhhHHHHHHHHHHHHHHHHHHHHHh---ccCcceEeEeHHhhhh---HHhhheee-EEe-cccCCCC-
Confidence 6799999999999999999999999999999999999 5669999999987654 58889997 664 2222221
Q ss_pred HhhhhHHHHHHHHHHHHhHH-HHHhhhhhhhhhhhccc
Q 028978 143 VRAMEMALFICSLALAVGHI-VVAYRTSCRERKKLLVY 179 (201)
Q Consensus 143 ~~~~~~~LflsS~vfAl~Hi-vvAYRtSCraRRKLlv~ 179 (201)
.+-+|+++|+++|-++. ++.||--.|||++.-.+
T Consensus 106 ---~~y~L~I~SfvlaW~E~WfldfrVlPqE~~~~~~~ 140 (171)
T PF10457_consen 106 ---FEYLLIITSFVLAWIETWFLDFRVLPQEREAERRY 140 (171)
T ss_pred ---ceEEehHHHHHHHHHHHHHHhheecchhHHHHHHH
Confidence 23589999999999999 99999999999998655
No 2
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=39.87 E-value=50 Score=30.18 Aligned_cols=91 Identities=26% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhHHHHHHHHhhhceeccccc-cc---chh-hHhhhhHHHHHHHHHH
Q 028978 83 LISIIRSAVIICVYGLCDGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVAD-ID---RGV-YVRAMEMALFICSLAL 157 (201)
Q Consensus 83 lvSi~RS~~IlCvY~~Cdgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~-~~---~~~-~~~~~~~~LflsS~vf 157 (201)
++++==|+++ +.+.+|--=|.-.-.=+-.++++.++++..+|+.+.|.-.+ .. +.+ ++..|--.-|++|++|
T Consensus 91 lL~lEvSvvv---FgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~~~s~~f 167 (261)
T PF10160_consen 91 LLSLEVSVVV---FGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWFISSLVF 167 (261)
T ss_pred HHHHHHHHHH---HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHHHHHHHH
Confidence 4555555554 44655544344556667788999999999999998887552 11 111 2223336899999999
Q ss_pred HHhHHHHHhhhhhhhhhhh
Q 028978 158 AVGHIVVAYRTSCRERKKL 176 (201)
Q Consensus 158 Al~HivvAYRtSCraRRKL 176 (201)
++.-..+--=|.||+|=||
T Consensus 168 ~~vY~~I~~L~~~r~r~~L 186 (261)
T PF10160_consen 168 ALVYGFILILTPLRWRDRL 186 (261)
T ss_pred HHHHHHHHHHHhccccccC
Confidence 9987666555888888664
No 3
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=34.84 E-value=1.5e+02 Score=28.24 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=53.8
Q ss_pred ccchhHHHHHHHHHHHHHHhhc------CCCCCCCCchHHHHHHHhHHHHHHHHhhhceecccccccchhhHhhhh---H
Q 028978 78 LVDIPLISIIRSAVIICVYGLC------DGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVADIDRGVYVRAME---M 148 (201)
Q Consensus 78 LvDIPlvSi~RS~~IlCvY~~C------dgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~~~~~~~~~~~~---~ 148 (201)
+-|.=...+.==+++-++|.+= .=-..--|||+|+-..|++..+ =..|=-..| ..++++..-. -
T Consensus 238 ~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv~v~~G~~~G~lia~~~l~~--p~~~Y~~~f-----~~~~~~~~i~~~la 310 (374)
T PF01528_consen 238 VSDMVFGAINVFAVLSIIYLIVIEVVLARYVKVQFGPHLGTLIACGILGL--PAIRYENRF-----VAANLHTGIAINLA 310 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH--HHHHHHHHh-----ccccHHHHHHHHHH
Confidence 3344444444444555555431 1122336999998766665544 334433344 2233333222 5
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhhhhhh
Q 028978 149 ALFICSLALAVGHIVVAYRTSCRERKKL 176 (201)
Q Consensus 149 ~LflsS~vfAl~HivvAYRtSCraRRKL 176 (201)
++++..+++++--++=||+..+|.++|-
T Consensus 311 ~i~~i~l~~~vvR~vR~~~~hr~~~~~y 338 (374)
T PF01528_consen 311 VIAIICLIMMVVRLVRAFLYHRRRSTRY 338 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 8889999999999999999888865554
No 4
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=30.28 E-value=51 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.070 Sum_probs=15.1
Q ss_pred CCchHHHHHHHhHHHHHHHHh
Q 028978 106 RGPYLGITTICSVLSLIFVSL 126 (201)
Q Consensus 106 ~gpYLgit~~cs~~S~~~vsv 126 (201)
||||.|.+-.-++.-++.+.+
T Consensus 3 y~~yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 3 YGFYVWSSYGVTALVLAGLIV 23 (46)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 899999887776666555543
No 5
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=25.35 E-value=2.3e+02 Score=28.08 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=58.7
Q ss_pred hhhhcccCcccccccchhHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhHHHHHHHHhhhceecccccccchhhHh
Q 028978 65 LSSHFNDYDFRYSLVDIPLISIIRSAVIICVYGLCDGPRRSRGPYLGITTICSVLSLIFVSLKASYVFSVADIDRGVYVR 144 (201)
Q Consensus 65 ~~~~~~~Y~FrsSLvDIPlvSi~RS~~IlCvY~~Cdgp~Ls~gpYLgit~~cs~~S~~~vsvKA~~Vf~~~~~~~~~~~~ 144 (201)
..|-|+||+|=+ .|+.++.-.|.-=+.+ |+-..=--++.....+|++|++.=..--. ++ -.+
T Consensus 28 ~vE~WERFsyYG----------mraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~i~GG~l--aD-----r~L 89 (498)
T COG3104 28 FVELWERFSYYG----------MRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTPIIGGWL--AD-----RVL 89 (498)
T ss_pred HHHHHHHHhhhh----------hHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHHHHHHHH--HH-----Hhc
Confidence 457788888755 5777777665543433 76666677888889999999875332000 00 122
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhh
Q 028978 145 AMEMALFICSLALAVGHIVVAYRT 168 (201)
Q Consensus 145 ~~~~~LflsS~vfAl~HivvAYRt 168 (201)
..+-.+++..++.++||++.++=+
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~ 113 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISS 113 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc
Confidence 334689999999999999999864
No 6
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=24.37 E-value=50 Score=28.89 Aligned_cols=18 Identities=44% Similarity=1.042 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHH--------hhcCCC
Q 028978 85 SIIRSAVIICVY--------GLCDGP 102 (201)
Q Consensus 85 Si~RS~~IlCvY--------~~Cdgp 102 (201)
|.+|+++|+|+- ++|||-
T Consensus 18 sfiRtLIilC~alavVLSSisiCDG~ 43 (184)
T PF15108_consen 18 SFIRTLIILCTALAVVLSSISICDGH 43 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhheeecce
Confidence 679999999974 578874
No 7
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=24.02 E-value=32 Score=25.06 Aligned_cols=11 Identities=45% Similarity=0.899 Sum_probs=9.0
Q ss_pred hhhhhhhhccc
Q 028978 169 SCRERKKLLVY 179 (201)
Q Consensus 169 SCraRRKLlv~ 179 (201)
.|||||+++=.
T Consensus 16 ~CkeRkr~~k~ 26 (60)
T PF04783_consen 16 LCKERKRLMKQ 26 (60)
T ss_pred HHHHHHHHHHH
Confidence 69999999843
No 8
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=23.79 E-value=84 Score=23.29 Aligned_cols=19 Identities=58% Similarity=0.852 Sum_probs=14.5
Q ss_pred CCcchHHHHHHHHHHHHHHHH
Q 028978 2 GFFSKEEKSKIILRAFKTLFF 22 (201)
Q Consensus 2 g~~~~e~~~~r~~R~~kT~FF 22 (201)
|| ++|++.+ +++..|++|-
T Consensus 27 Gf-s~~~i~~-l~~ayr~l~~ 45 (83)
T PF13720_consen 27 GF-SKEEISA-LRRAYRILFR 45 (83)
T ss_dssp TS--HHHHHH-HHHHHHHHHT
T ss_pred CC-CHHHHHH-HHHHHHHHHh
Confidence 77 7887776 8889998884
No 9
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.95 E-value=3e+02 Score=20.58 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhH--HHHHHhhhhhhH
Q 028978 7 EEKSKIILR-----AFKTLFFLITMLVSLLLFSAPV--LLAIADTLLPSA 49 (201)
Q Consensus 7 e~~~~r~~R-----~~kT~FFlvaM~~SLLl~SaP~--Lv~i~Dv~lP~~ 49 (201)
||..+|-+| ++|+..|+.+.+.--+ .++ .++++-+.+|++
T Consensus 11 ~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~---~~la~~~~~~av~LPwv 57 (73)
T PF11298_consen 11 QDQRRRRRRYLIMMGIRIPCFVLAAVVYRL---GWLAWAIIVGAVPLPWV 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHhcccchh
Confidence 444455555 5788888888776654 443 344555666664
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.34 E-value=1.1e+02 Score=23.62 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 028978 18 KTLFFLITMLVSLLLFSAPV 37 (201)
Q Consensus 18 kT~FFlvaM~~SLLl~SaP~ 37 (201)
|++.||.-.+|++|++|.-+
T Consensus 4 K~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 56666666677777766543
No 11
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=20.28 E-value=99 Score=23.31 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.6
Q ss_pred CCchHHHHHHHhHHHHHHHHhh
Q 028978 106 RGPYLGITTICSVLSLIFVSLK 127 (201)
Q Consensus 106 ~gpYLgit~~cs~~S~~~vsvK 127 (201)
||+|.|.+..-++.+++.+.+-
T Consensus 15 yafyVWlA~~~tll~l~~l~v~ 36 (67)
T COG3114 15 YAFYVWLAVGMTLLPLAVLVVH 36 (67)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 7999999988888887766543
No 12
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=20.22 E-value=73 Score=25.42 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=17.7
Q ss_pred HHhhhhhhhhh---hhcccccchHHHh
Q 028978 164 VAYRTSCRERK---KLLVYKIDIEAVS 187 (201)
Q Consensus 164 vAYRtSCraRR---KLlv~rID~Eav~ 187 (201)
-||||-|.=|+ ++..|.||+..+.
T Consensus 18 saYRtA~KLR~lQk~~~l~lv~l~~v~ 44 (127)
T PF09068_consen 18 SAYRTAMKLRFLQKRLCLDLVDLSNVI 44 (127)
T ss_dssp HHHHHHHHHHHHHHHTTGGG--HHHHH
T ss_pred HHhHHHHHHHHHHHHHhheeeeHHHHH
Confidence 58999998885 6788999987653
Done!