Query 028978
Match_columns 201
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dco_A S1P4 first extracellula 14.8 46 0.0016 21.1 0.6 8 165-172 5-12 (34)
2 2ju0_B Phosphatidylinositol 4- 11.7 1E+02 0.0035 21.0 1.6 11 148-158 38-48 (52)
3 1lv4_A Catestatin, chromograni 10.3 39 0.0013 20.5 -0.8 14 2-15 13-26 (26)
4 1eg3_A Dystrophin; EF-hand lik 10.0 1.3E+02 0.0044 25.6 2.0 26 163-188 58-86 (261)
5 1hx1_B BAG-1, BAG-family molec 7.9 82 0.0028 24.6 -0.0 16 168-183 82-97 (114)
6 2g3q_A Protein YBL047C; endocy 7.4 2.6E+02 0.0088 16.9 2.1 6 1-7 14-19 (43)
7 4b4a_A TATC, SEC-independent p 6.8 7.2E+02 0.025 20.6 5.3 36 1-37 176-216 (249)
8 1j2j_B ADP-ribosylation factor 6.6 1.5E+02 0.005 19.8 0.7 15 4-18 4-18 (45)
9 1t7s_A BAG-1 cochaperone; stru 5.8 1.2E+02 0.0042 24.3 -0.0 16 168-183 97-112 (137)
10 1lwu_A Fibrinogen alpha-1 chai 5.7 1.4E+02 0.0047 23.6 0.2 16 180-196 65-80 (119)
No 1
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=14.85 E-value=46 Score=21.12 Aligned_cols=8 Identities=75% Similarity=1.389 Sum_probs=6.7
Q ss_pred Hhhhhhhh
Q 028978 165 AYRTSCRE 172 (201)
Q Consensus 165 AYRtSCra 172 (201)
||||.|..
T Consensus 5 ayrtdce~ 12 (34)
T 2dco_A 5 AYRTDCEE 12 (34)
T ss_dssp GTHHHHHH
T ss_pred hhhcchhh
Confidence 89999974
No 2
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=11.74 E-value=1e+02 Score=21.01 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH
Q 028978 148 MALFICSLALA 158 (201)
Q Consensus 148 ~~LflsS~vfA 158 (201)
|++-|+|++++
T Consensus 38 PalVL~s~v~s 48 (52)
T 2ju0_B 38 PALVLSSMIMS 48 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 3
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=10.30 E-value=39 Score=20.47 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=7.9
Q ss_pred CCcchHHHHHHHHH
Q 028978 2 GFFSKEEKSKIILR 15 (201)
Q Consensus 2 g~~~~e~~~~r~~R 15 (201)
||.+.+++.+|.||
T Consensus 13 ~Fr~Pg~~~rrgw~ 26 (26)
T 1lv4_A 13 GFRGPGPQLXXXXX 26 (26)
T ss_dssp SSCSSCTTC-----
T ss_pred ccCCCccccccccC
Confidence 78888999888886
No 4
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=10.00 E-value=1.3e+02 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.5
Q ss_pred HHHhhhhhhhhh---hhcccccchHHHhh
Q 028978 163 VVAYRTSCRERK---KLLVYKIDIEAVSL 188 (201)
Q Consensus 163 vvAYRtSCraRR---KLlv~rID~Eav~~ 188 (201)
.-+|||-|+-|+ ++..+.||++.+..
T Consensus 58 ~~~yRta~klr~lq~~~~l~lv~l~~~~~ 86 (261)
T 1eg3_A 58 FSAYRTAMKLRRLQKALCLDLLSLSAACD 86 (261)
T ss_dssp SHHHHHHHHHHHHHHHTTGGGCCHHHHHH
T ss_pred hhhHHHHHhhHhhhhhheeceeeHHHHHH
Confidence 679999999997 67789999886643
No 5
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=7.94 E-value=82 Score=24.64 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.3
Q ss_pred hhhhhhhhhcccccch
Q 028978 168 TSCRERKKLLVYKIDI 183 (201)
Q Consensus 168 tSCraRRKLlv~rID~ 183 (201)
+.||..||.+|.+|--
T Consensus 82 ~~~R~kRK~lV~~iQ~ 97 (114)
T 1hx1_B 82 KDSRLKRKGLVKKVQA 97 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999988743
No 6
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=7.36 E-value=2.6e+02 Score=16.86 Aligned_cols=6 Identities=67% Similarity=1.342 Sum_probs=3.9
Q ss_pred CCCcchH
Q 028978 1 MGFFSKE 7 (201)
Q Consensus 1 mg~~~~e 7 (201)
||| ++|
T Consensus 14 MGF-~~~ 19 (43)
T 2g3q_A 14 MGF-TEE 19 (43)
T ss_dssp TTS-CHH
T ss_pred cCC-CHH
Confidence 898 443
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=6.79 E-value=7.2e+02 Score=20.63 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhH
Q 028978 1 MGFFSKEEKSKIILRAFKTLFFLITML-----VSLLLFSAPV 37 (201)
Q Consensus 1 mg~~~~e~~~~r~~R~~kT~FFlvaM~-----~SLLl~SaP~ 37 (201)
+|..+ -+..++-||.+--..|+++++ .|-++.+.|.
T Consensus 176 ~Giv~-~~~l~~~Rr~~iv~~~v~aAiiTPD~~sq~llaiPl 216 (249)
T 4b4a_A 176 AGVIT-PEQLASFRKYFIVIAFVIGAIIAPDVSTQVLMAIPL 216 (249)
T ss_dssp TTSSC-HHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCcC-HHHHHHHhHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 35544 455677899888888888776 5777777776
No 8
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=6.61 E-value=1.5e+02 Score=19.78 Aligned_cols=15 Identities=53% Similarity=0.806 Sum_probs=10.7
Q ss_pred cchHHHHHHHHHHHH
Q 028978 4 FSKEEKSKIILRAFK 18 (201)
Q Consensus 4 ~~~e~~~~r~~R~~k 18 (201)
+..||||+.+.+.++
T Consensus 4 F~deekSk~L~~Ll~ 18 (45)
T 1j2j_B 4 FEDEEKSKMLARLLK 18 (45)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHH
Confidence 468999997666543
No 9
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=5.80 E-value=1.2e+02 Score=24.29 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=13.5
Q ss_pred hhhhhhhhhcccccch
Q 028978 168 TSCRERKKLLVYKIDI 183 (201)
Q Consensus 168 tSCraRRKLlv~rID~ 183 (201)
..||+.||-||.+|--
T Consensus 97 ~~~R~KRK~lV~~IQ~ 112 (137)
T 1t7s_A 97 KRNREKRKTLVNGIQT 112 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 6799999999988853
No 10
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=5.71 E-value=1.4e+02 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.1
Q ss_pred ccchHHHhhhhhhhhhh
Q 028978 180 KIDIEAVSLLISVYDIF 196 (201)
Q Consensus 180 rID~Eav~~~k~~~~~~ 196 (201)
-||+ .+++||++..+.
T Consensus 65 DIDI-KiRsCKGSCar~ 80 (119)
T 1lwu_A 65 DIDV-ALRACKGSCARY 80 (119)
T ss_dssp HHHH-HHHHGGGTBSSC
T ss_pred hhhh-hhhhccchHHHH
Confidence 4666 999999986643
Done!