Query 028978
Match_columns 201
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 08:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028978.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028978hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a1 a.39.1.7 (A:85-209) Dy 24.1 17 0.0012 26.6 2.0 25 164-188 20-47 (125)
2 d2g3qa1 a.5.2.1 (A:1339-1381) 19.8 29 0.0021 21.6 2.1 13 1-14 14-26 (43)
3 d1ha9a_ g.3.2.1 (A:) Trypsin i 17.6 8.4 0.00061 23.0 -0.8 11 190-200 5-15 (34)
4 d1bf5a3 d.93.1.1 (A:569-710) S 10.7 34 0.0025 25.5 0.7 11 1-11 11-21 (142)
5 d1in0a1 d.58.49.1 (A:2-89) Hyp 8.8 47 0.0034 22.9 0.8 17 64-80 21-37 (88)
6 d1j2jb_ a.7.8.1 (B:) ADP-ribos 8.4 67 0.0049 19.6 1.3 13 5-17 3-15 (41)
7 d1nekb2 d.15.4.2 (B:1-106) Suc 7.5 23 0.0017 24.7 -1.5 28 163-190 48-76 (106)
8 d3c7ba1 d.58.1.5 (A:239-304) D 7.3 68 0.005 21.1 1.0 16 179-194 4-19 (66)
9 d2bs2b2 d.15.4.2 (B:1-106) Fum 7.2 24 0.0018 24.7 -1.4 28 164-191 51-79 (106)
10 d1oqya1 a.5.2.1 (A:160-200) DN 7.1 99 0.0072 18.0 1.6 7 1-8 14-20 (41)
No 1
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.08 E-value=17 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHhhhhhhhhh---hhcccccchHHHhh
Q 028978 164 VAYRTSCRERK---KLLVYKIDIEAVSL 188 (201)
Q Consensus 164 vAYRtSCraRR---KLlv~rID~Eav~~ 188 (201)
-||||.|.=|+ ++..|.||+..+..
T Consensus 20 saYRTA~KLR~vQK~~~l~lv~l~~~~e 47 (125)
T d1eg3a1 20 SAYRTAMKLRRLQKALCLDLLSLSAACD 47 (125)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 58999999885 77889999876543
No 2
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=19.77 E-value=29 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=7.8
Q ss_pred CCCcchHHHHHHHH
Q 028978 1 MGFFSKEEKSKIIL 14 (201)
Q Consensus 1 mg~~~~e~~~~r~~ 14 (201)
||| ++|+-.+-+.
T Consensus 14 MGF-~e~~A~~AL~ 26 (43)
T d2g3qa1 14 MGF-TEEEAHNALE 26 (43)
T ss_dssp TTS-CHHHHHHHHH
T ss_pred cCC-CHHHHHHHHH
Confidence 999 6665544343
No 3
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=17.58 E-value=8.4 Score=23.02 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=9.2
Q ss_pred hhhhhhhhhhc
Q 028978 190 ISVYDIFLINC 200 (201)
Q Consensus 190 k~~~~~~~~~~ 200 (201)
.++-||+||||
T Consensus 5 ~gvcpkilkkc 15 (34)
T d1ha9a_ 5 GGVCPKILKKC 15 (34)
T ss_dssp TBCCCCCCCBC
T ss_pred cccCHHHHHHh
Confidence 45789999998
No 4
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.73 E-value=34 Score=25.47 Aligned_cols=11 Identities=55% Similarity=0.875 Sum_probs=7.4
Q ss_pred CCCcchHHHHH
Q 028978 1 MGFFSKEEKSK 11 (201)
Q Consensus 1 mg~~~~e~~~~ 11 (201)
|||++||+-.+
T Consensus 11 ~GFIsK~~a~~ 21 (142)
T d1bf5a3 11 MGFISKERERA 21 (142)
T ss_dssp CCCCCHHHHHH
T ss_pred EEEecHHHHHH
Confidence 67777776554
No 5
>d1in0a1 d.58.49.1 (A:2-89) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=8.82 E-value=47 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=12.7
Q ss_pred hhhhhcccCcccccccc
Q 028978 64 TLSSHFNDYDFRYSLVD 80 (201)
Q Consensus 64 ~~~~~~~~Y~FrsSLvD 80 (201)
+.++--+|||||+|=..
T Consensus 21 a~rEi~~RyDFKgs~a~ 37 (88)
T d1in0a1 21 ANRVLSTRYDFRGVEAV 37 (88)
T ss_dssp HHHHHTTBGGGTTCCEE
T ss_pred HHHHHhcccccCCCCce
Confidence 45777889999987543
No 6
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.41 E-value=67 Score=19.65 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHH
Q 028978 5 SKEEKSKIILRAF 17 (201)
Q Consensus 5 ~~e~~~~r~~R~~ 17 (201)
..||||+.+-|.+
T Consensus 3 ~dEeksklL~~LL 15 (41)
T d1j2jb_ 3 EDEEKSKMLARLL 15 (41)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 6899998666544
No 7
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.51 E-value=23 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHhhhhhhhhh-hhcccccchHHHhhhh
Q 028978 163 VVAYRTSCRERK-KLLVYKIDIEAVSLLI 190 (201)
Q Consensus 163 vvAYRtSCraRR-KLlv~rID~Eav~~~k 190 (201)
-++||.|||+.- -..--+||=...++|+
T Consensus 48 sLsfr~sCr~giCGsCam~ING~~~LAC~ 76 (106)
T d1nekb2 48 SLSFRRSCREGVCGSDGLNMNGKNGLACI 76 (106)
T ss_dssp TCCCCCCSSSSCSCTTEEEETTEEEETTS
T ss_pred CEEEEcCCCCCCCCcceEEEcCccccchh
Confidence 589999998741 1123344444455554
No 8
>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.31 E-value=68 Score=21.14 Aligned_cols=16 Identities=44% Similarity=0.385 Sum_probs=12.4
Q ss_pred cccchHHHhhhhhhhh
Q 028978 179 YKIDIEAVSLLISVYD 194 (201)
Q Consensus 179 ~rID~Eav~~~k~~~~ 194 (201)
.|||+|+|..+-++|.
T Consensus 4 IrIDQ~~Vk~Y~~g~d 19 (66)
T d3c7ba1 4 IKVDQEAVKEYASWMD 19 (66)
T ss_dssp CEECHHHHHHHHTTSC
T ss_pred ceecHHHHHHHHHhcc
Confidence 3789999988876654
No 9
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Probab=7.17 E-value=24 Score=24.71 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=20.4
Q ss_pred HHhhhhhhhhh-hhcccccchHHHhhhhh
Q 028978 164 VAYRTSCRERK-KLLVYKIDIEAVSLLIS 191 (201)
Q Consensus 164 vAYRtSCraRR-KLlv~rID~Eav~~~k~ 191 (201)
+|||.|||+.= -..--+||=+..++|+-
T Consensus 51 l~fr~sCr~giCGsCam~ING~~~lAC~t 79 (106)
T d2bs2b2 51 LNFDFVCRAGICGSCGMMINGRPSLACRT 79 (106)
T ss_dssp CCCCCSSSSSSSCTTEEEETTEEEEGGGC
T ss_pred EEEEeCcCCCCCCcceEEECCccccceee
Confidence 79999999864 34556677777777764
No 10
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.06 E-value=99 Score=18.03 Aligned_cols=7 Identities=43% Similarity=1.089 Sum_probs=4.6
Q ss_pred CCCcchHH
Q 028978 1 MGFFSKEE 8 (201)
Q Consensus 1 mg~~~~e~ 8 (201)
||| ++|+
T Consensus 14 MGF-~~~~ 20 (41)
T d1oqya1 14 MGY-ERER 20 (41)
T ss_dssp TTC-CSHH
T ss_pred cCC-CHHH
Confidence 898 5544
Done!