BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028980
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMV|A Chain A, X-Ray Crystal Structure Of L-Azetidine-2-Carboxylate
Hydrolase
Length = 240
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 109 NRPPEKRQRVPSAYNQFIKEEIQRIKAN---NPDISHREAFSTAAKNWAHFP 157
N P++ + + Y ++ RI PD + RE F T+ KNW FP
Sbjct: 51 NESPQQTETPGALYQDILRAVYDRIAKEWGLEPDAAEREEFGTSVKNWPAFP 102
>pdb|2W2D|B Chain B, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|D Chain D, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 431
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 225 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 273
Query: 87 KCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--E 144
K N +I +R +A E N+ + + YNQ+ +EE I N D+S + E
Sbjct: 274 KVNTQIDLIRKKMKEALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 329
Query: 145 AFSTAAKNWAHF 156
+ + A N F
Sbjct: 330 SINKAMININKF 341
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 15 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52
>pdb|3TMM|A Chain A, Tfam Imposes A U-Turn On Mitochondrial Dna
Length = 238
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 47 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 753 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 801
Query: 87 KCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--E 144
K N +I +R +A E N+ + + YNQ+ +EE I N D+S + E
Sbjct: 802 KVNTQIDLIRKKMKEALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 857
Query: 145 AFSTAAKNWAHF 156
+ + A N F
Sbjct: 858 SINKAMININKF 869
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 720 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 768
Query: 87 KCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--E 144
K N +I +R +A E N+ + + YNQ+ +EE I N D+S + E
Sbjct: 769 KVNTQIDLIRKKMKEALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 824
Query: 145 AFSTAAKNWAHF 156
+ + A N F
Sbjct: 825 SINKAMININKF 836
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TE9|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TKF|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate.
pdb|3TKF|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate
Length = 345
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 122 YNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL-MLEANNQPKLDDVSTRV 180
Y+ + E I ++KANNPD++ + K A + FG+ +L+ +V RV
Sbjct: 73 YSNLVAETISKVKANNPDLNSDD----LVKEIAIEILVSFGIKILDVIEGKVSSEVDARV 128
Query: 181 LVNNFPTV 188
N+ T+
Sbjct: 129 SFNSATTI 136
>pdb|3TK7|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TK7|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TNO|A Chain A, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3TNO|B Chain B, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3UPB|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|3UPB|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|4E0C|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
pdb|4E0C|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
Length = 345
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 122 YNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL-MLEANNQPKLDDVSTRV 180
Y+ + E I ++KANNPD++ + K A + FG+ +L+ +V RV
Sbjct: 73 YSNLVAETISKVKANNPDLNSDD----LVKEIAIEILVSFGIKILDVIEGKVSSEVDARV 128
Query: 181 LVNNFPTV 188
N+ T+
Sbjct: 129 SFNSATTI 136
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 670 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 718
Query: 87 KCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--E 144
K N +I +R +A E N+ + + YNQ+ +EE I N D+S + E
Sbjct: 719 KVNTQIDLIRKKMKEALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 774
Query: 145 AFSTAAKNWAHF 156
+ + A N F
Sbjct: 775 SINKAMININKF 786
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 671 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 719
Query: 87 KCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--E 144
K N +I +R +A E N+ + + YNQ+ +EE I N D+S + E
Sbjct: 720 KVNTQIDLIRKKMKEALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 775
Query: 145 AFSTAAKNWAHF 156
+ + A N F
Sbjct: 776 SINKAMININKF 787
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 671 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 719
Query: 87 KCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--E 144
K N +I +R +A E N+ + + YNQ+ +EE I N D+S + E
Sbjct: 720 KVNTQIDLIRKKMKEALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 775
Query: 145 AFSTAAKNWAHF 156
+ + A N F
Sbjct: 776 SINKAMININKF 787
>pdb|3IGX|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis.
pdb|3IGX|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis
Length = 324
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 122 YNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL-MLEANNQPKLDDVSTRV 180
Y+ + E I ++KANNPD++ + K A + FG+ +L+ +V RV
Sbjct: 52 YSNLVAETISKVKANNPDLNSDD----LVKEIAIEILVSFGIKILDVIEGKVSSEVDARV 107
Query: 181 LVNNFPTV 188
N+ T+
Sbjct: 108 SFNSATTI 115
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 52 NMAAAFQSLSWQDVHHH---------QAPSYASPE--CRIDLGSSSKCNNKISAMRTP 98
++AAA L + + H ++P SP C DLGS K NN + + TP
Sbjct: 119 DVAAALDFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPITTP 176
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 13 LCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNL 48
L Y N N + V + C +L +I+T+ CG C L
Sbjct: 205 LPYFKINCVNETIEVEI-CGALKNIITLACGFCDGL 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,168,511
Number of Sequences: 62578
Number of extensions: 229227
Number of successful extensions: 490
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 22
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)