BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028980
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 252 bits (643), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/166 (75%), Positives = 139/166 (83%), Gaps = 8/166 (4%)
Query: 8 VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH 67
+A EQLCYIPCNFCNI+LAV+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS +
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-- 63
Query: 68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIK 127
QA +YA PE GSSS+ + KI + R T TE+R+VNRPPEKRQRVPSAYNQFIK
Sbjct: 64 -QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNRPPEKRQRVPSAYNQFIK 117
Query: 128 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 173
EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K+
Sbjct: 118 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Query: 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
+D + E++CY+ C+FC +LAVSVP +SL +VTVRCGHC+NL S+N+ + S +
Sbjct: 3 VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62
Query: 66 HHHQAPS---YASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAY 122
H P S R D SSS+ N +S ++ RPPEKRQRVPSAY
Sbjct: 63 HQDLQPHRQHTTSLVTRKDCASSSRSTNNLSEN---IDREAPRMPPIRPPEKRQRVPSAY 119
Query: 123 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDVS 177
N+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N + K D S
Sbjct: 120 NRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 126/177 (71%), Gaps = 10/177 (5%)
Query: 3 SCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSW 62
S I APE +CY+ CNFCN + AVSVP +S+L+IVTVRCGHC++L SVN+ Q+L
Sbjct: 2 SAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPA 61
Query: 63 QDVHHHQ----APSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRV 118
+D H Q + + E + GSSS+ ++ M + + TE + RPPEKRQRV
Sbjct: 62 ED--HLQDNLKMHNMSFRENYSEYGSSSRYG-RVPMMFSKND--TEHMLHVRPPEKRQRV 116
Query: 119 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDD 175
PSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL +++ KLD+
Sbjct: 117 PSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSK-KLDE 172
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 172 bits (437), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 120/187 (64%), Gaps = 17/187 (9%)
Query: 7 DVAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQD 64
+AP EQ+CY+ CNFCN +LAVSVP +S+L+IVTVRCGHC+NL SVN+ S + QD
Sbjct: 4 QIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD 63
Query: 65 VHHHQAPSYASPECRIDLGSSSKCN----NKISAMRTP-----------TNKATEERVVN 109
HHH C D + + S +R P N+ E+ +
Sbjct: 64 HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHA 123
Query: 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANN 169
RPPEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 124 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEG 183
Query: 170 QPKLDDV 176
KL DV
Sbjct: 184 GKKLVDV 190
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 117/191 (61%), Gaps = 37/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM------AAA-------- 56
EQLCY+ CNFC+ +LAV VPCSSL VTVRCGHC+NL SVN+ AAA
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 57 FQSLS--------WQDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
Q+L +V QAP+ ASP S+S C N A M + NK
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 102 ATEER--------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
AT+ NR EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 154 AHFPHIHFGLM 164
AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 117/191 (61%), Gaps = 37/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM------AAA-------- 56
EQLCY+ CNFC+ +LAV VPCSSL VTVRCGHC+NL SVN+ AAA
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 57 FQSLS--------WQDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
Q+L +V QAP+ ASP S+S C N A M + NK
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 102 ATEER--------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
AT+ NR EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 154 AHFPHIHFGLM 164
AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 110/191 (57%), Gaps = 37/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
EQLCY+ CN C+ +LAV VPCSSL VTVRCGHC+NL SVN+ + H
Sbjct: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82
Query: 69 QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
PS + +P ++ +S+ C + AM+ P K
Sbjct: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142
Query: 103 TEER---------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
++ NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
Query: 154 AHFPHIHFGLM 164
AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 110/191 (57%), Gaps = 37/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
EQLCY+ CN C+ +LAV VPCSSL VTVRCGHC+NL SVN+ + H
Sbjct: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82
Query: 69 QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
PS + +P ++ +S+ C + AM+ P K
Sbjct: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142
Query: 103 TEER---------VVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
++ NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
Query: 154 AHFPHIHFGLM 164
AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 112/175 (64%), Gaps = 16/175 (9%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQA 70
+ LCY+ CNFC +LAV+VP +SL VTVRCG C+NL SVNM + S Q
Sbjct: 23 DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGP 82
Query: 71 PSYASPECRID-LGSSSKCNNKISAMRTPT-------------NKATEERVVNRPPEKRQ 116
SY +P+ ++ L + N + + PT ++ + VNRPPEKRQ
Sbjct: 83 HSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQ 142
Query: 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQP 171
RVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+ +NQP
Sbjct: 143 RVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV--PDNQP 195
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Query: 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
+ E +CY+ CN+CN +L V+VP + +IVTVRCGHC+ + S+++A Q+ + QD
Sbjct: 3 VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQD- 61
Query: 66 HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQF 125
HQ + + N + S P + ++ RPPEKRQRVPSAYN+F
Sbjct: 62 --HQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRF 119
Query: 126 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163
IKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 120 IKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 108/182 (59%), Gaps = 26/182 (14%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSV-------------NMAAAF 57
+QLCY+ C+FC+ VLAVSVP SSL VTVRCGHCSNL SV N+ +F
Sbjct: 23 DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF 82
Query: 58 QSLSWQDVHHHQAPSYASPECRIDLG------SSSKCNNKISAMRTPTNKATEE------ 105
+ S I++ +S+ N+ M T ++ +
Sbjct: 83 LPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPR 142
Query: 106 -RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 164
NRPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 143 PPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 202
Query: 165 LE 166
+
Sbjct: 203 AD 204
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 99/163 (60%), Gaps = 12/163 (7%)
Query: 10 PEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAF-------QSLS 61
P Q+C++ C FC +L VSVP +SL +VTVRCGHC++L SVN M A+F
Sbjct: 18 PGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH 77
Query: 62 WQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATE----ERVVNRPPEKRQR 117
+ + + E + K N+ + + + N+ + +VVN+PPEKRQR
Sbjct: 78 LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQR 137
Query: 118 VPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 160
PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 138 APSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 91/149 (61%), Gaps = 17/149 (11%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAFQSLSWQDVHHHQ 69
E LCY+ C +CN VLAV VPC L+D VTV+CGHC+NL ++ Q LS D H
Sbjct: 8 EHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTD---HP 64
Query: 70 APSYASP--ECRIDLGSSSKCNNKISAMRTPTNKATEERV--VNRPPEKRQRVPSAYNQF 125
+ P +CR N+ + +PT+ R V +PPEK+ R+PSAYN+F
Sbjct: 65 LGPFQGPCTDCR---------RNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRF 115
Query: 126 IKEEIQRIKANNPDISHREAFSTAAKNWA 154
++EEIQRIKA PDI HREAFS AAKNWA
Sbjct: 116 MREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 63/72 (87%), Gaps = 1/72 (1%)
Query: 93 SAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 152
+A + P+ + T V+NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 198 AAAKEPSPR-TNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 256
Query: 153 WAHFPHIHFGLM 164
WAHFPHIHFGLM
Sbjct: 257 WAHFPHIHFGLM 268
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 7 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM 53
D EQLCY+ C++C+ VL VSVP SSL + VTVRCGHCS+L +VNM
Sbjct: 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNM 100
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 14/149 (9%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQ---SLSWQDVHH 67
E L Y+ C+ CN +LAV +P +LD VTV+CGHC NL + Q SL+ Q
Sbjct: 19 EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQ---- 74
Query: 68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIK 127
S+ + + ++ S+ + + V +PPEK+QR+PSAYN+F++
Sbjct: 75 --MQSFGGSDYK-----KGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMR 127
Query: 128 EEIQRIKANNPDISHREAFSTAAKNWAHF 156
+EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct: 128 DEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWS-VNM----AAAFQSLSWQDV 65
E+L + C+FC VL VSVPCSS+L +V V+CGHCS + S VN+ +A L+ Q++
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQEL 73
Query: 66 HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQF 125
P S E SS + + V N+PP ++QR PSAYN F
Sbjct: 74 DAGPPPGEYSDE-------SSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCF 126
Query: 126 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 160
+KEEI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 127 VKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia virus GN=gag PE=3 SV=3
Length = 529
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A +R+ P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 335 AGRSPTNLAKVKRITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 390
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVL 181
P I G LE +L+D+ ++ L
Sbjct: 391 QSAPDI--GRKLE-----RLEDLKSKTL 411
>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A OS=Clostridium botulinum GN=botA PE=1
SV=3
Length = 1296
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 28 SVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSK 87
++P IV+ + ++N A + ++ W +V+ + ++ + K
Sbjct: 672 ALPVFGTFAIVSYIANKVLTVQTINNALSKRNEKWDEVYKYTVTNWLA-----------K 720
Query: 88 CNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 145
N +I +R KA E N+ + + YNQ+ +EE I N D+S + E+
Sbjct: 721 VNTQIDLIREKMKKALE----NQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 776
Query: 146 FSTAAKNWAHF 156
++A N F
Sbjct: 777 INSAMININKF 787
>sp|Q5NE80|TRPA_FRATT Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|Q14FN3|TRPA_FRAT1 Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|A4IVS5|TRPA_FRATW Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|B2SEK8|TRPA_FRATM Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|Q0BP46|TRPA_FRATO Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|Q2A5V4|TRPA_FRATH Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|A7N9D1|TRPA_FRATF Tryptophan synthase alpha chain OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=trpA PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 133 IKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEAN----------NQPKLDDVSTRVLV 182
I+A I+ ++ F K A +PHI GL+L AN Q LD +L+
Sbjct: 70 IRALESGITPKDCFDILTKIRAKYPHIPIGLLLYANLVYANGIENFYQKCLDAGVDSILI 129
Query: 183 NNFPTVLMHEKKKKKDLHR 201
+ P HE K+ +D+ +
Sbjct: 130 ADVPA---HESKEFRDIAK 145
>sp|Q6FK47|IPI1_CANGA Pre-rRNA-processing protein IPI1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=IPI1 PE=3 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 13 LCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGH--CSNLWSVNMAAAFQSLSWQDVHHHQA 70
+ YI +I+ V + L + CG C W+ MA F+ LSW+ H +
Sbjct: 135 VLYINMGMTHILPRVQADSTKFLGCLLKYCGQEFCDQAWNKLMAGIFRVLSWETQHSKNS 194
Query: 71 PSYASPECRIDLGSSSKCNNKISAMRTPTNKATEE 105
A +SK +NK A T A E
Sbjct: 195 NQAAGAM------QTSKRDNKFQAAHLSTLYALLE 223
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2 SV=1
Length = 362
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 89 NNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFST 148
++ +S R+P K +E R+ +R +A+ + K+E +R+ NPD+ + E
Sbjct: 24 SDGLSPHRSPREKGSETRI--------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKM 75
Query: 149 AAKNW 153
K+W
Sbjct: 76 LGKSW 80
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 89 NNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFST 148
++ +S R+P K +E R+ +R +A+ + K+E +R+ NPD+ + E
Sbjct: 24 SDGLSPHRSPREKGSETRI--------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKM 75
Query: 149 AAKNW 153
K+W
Sbjct: 76 LGKSW 80
>sp|Q49460|Y468_MYCGE Uncharacterized ABC transporter permease MG468 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG468 PE=3 SV=3
Length = 1783
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 101 KATEERVVNRPPEKRQRVPSAYNQFIKEEI----QRIKANNPDISHREAFS--TAAKNWA 154
K T+++ N P+K V S Y K+++ KA+N DIS F+ A NW
Sbjct: 234 KITQKQQTNNDPQKDSTVNSLYKTNNKDKVWFKSDETKADNTDISANYLFTGGNEAANW- 292
Query: 155 HFPHIHFGLMLEANNQP 171
FP+++ + ++ P
Sbjct: 293 -FPNLYANIPIDLEIDP 308
>sp|Q2F7J0|POL_XMRV4 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42)
GN=gag-pol PE=3 SV=1
Length = 1733
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 93 SAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 152
+A R+PTN A + + P E PSA+ + +KE +R +P+ +E + +
Sbjct: 341 NAGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFI 396
Query: 153 WAHFPHIHFGLMLEANNQPKLDDVSTRVL 181
W P I G LE +L+D+ ++ L
Sbjct: 397 WQSAPDI--GRKLE-----RLEDLKSKTL 418
>sp|A1Z651|POL_XMRV6 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 93 SAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 152
+A R+PTN A + + P E PSA+ + +KE +R +P+ +E + +
Sbjct: 341 NAGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFI 396
Query: 153 WAHFPHIHFGLMLEANNQPKLDDVSTRVL 181
W P I G LE +L+D+ ++ L
Sbjct: 397 WQSAPDI--GRKLE-----RLEDLKSKTL 418
>sp|Q2F7J3|POL_XMRV3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 93 SAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 152
+A R+PTN A + + P E PSA+ + +KE +R +P+ +E + +
Sbjct: 341 NAGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFI 396
Query: 153 WAHFPHIHFGLMLEANNQPKLDDVSTRVL 181
W P I G LE +L+D+ ++ L
Sbjct: 397 WQSAPDI--GRKLE-----RLEDLKSKTL 418
>sp|P29168|GAG_MLVDE Gag polyprotein OS=Murine leukemia virus (strain DEF27) GN=gag PE=3
SV=3
Length = 536
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A + + P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 342 AGRSPTNLAKVKGITQGPSES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 397
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVLVN 183
P I G LE +L+D+ ++ L +
Sbjct: 398 QSAPDI--GRKLE-----RLEDLKSKTLGD 420
>sp|Q2TBV6|CC124_BOVIN Coiled-coil domain-containing protein 124 OS=Bos taurus GN=CCDC124
PE=2 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 105 ERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
E V+R PE+R R +AY F + ++ R+K NP++ + K W P
Sbjct: 158 EEAVDRHPERRMR--AAYTAFEEAQLPRLKQENPNMRLSQLKQMLKKEWLRSP 208
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 96 RTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAH 155
R P +K +E R+ +R +A+ + K+E +R+ NPD+ + E K+W
Sbjct: 34 RPPGDKGSESRI--------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWK- 84
Query: 156 FPHIHFGLMLEANNQPKLDDVSTRVL--VNNFPTVLMHEKKKKK 197
L L + +P +D+ L + ++P ++KK+
Sbjct: 85 ------ALTL-SQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQ 121
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
++Y +F KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q2F7I9|GAG_XMRV4 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP42)
GN=gag PE=3 SV=1
Length = 536
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A + + P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 342 AGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 397
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVLVN 183
P I G LE +L+D+ ++ L +
Sbjct: 398 QSAPDI--GRKLE-----RLEDLKSKTLGD 420
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q2F7J2|GAG_XMRV3 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP35)
GN=gag PE=3 SV=1
Length = 536
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A + + P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 342 AGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 397
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVL 181
P I G LE +L+D+ ++ L
Sbjct: 398 QSAPDI--GRKLE-----RLEDLKSKTL 418
>sp|Q27ID9|GAG_XMRV6 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP62)
GN=gag PE=3 SV=1
Length = 536
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A + + P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 342 AGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 397
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVLVN 183
P I G LE +L+D+ ++ L +
Sbjct: 398 QSAPDI--GRKLE-----RLEDLKSKTLGD 420
>sp|Q4IB96|AEF1_GIBZE Chromatin modification-related protein EAF1 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=EAF1 PE=3 SV=1
Length = 1629
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 67 HHQAPSYASP--ECRIDLGSSSKCNNKI------SAMRTPTNKATEERVVNRPPEKRQRV 118
H+ P Y P + +I+ G+ + +K +R P+ K E+RV+ PP+
Sbjct: 386 EHEGPQYVEPAEQKKIEDGTHERDTDKYHQSHQDGDIRAPSTKDLEDRVLEAPPD----- 440
Query: 119 PSAYNQFIKEEIQ 131
SA Q ++E I+
Sbjct: 441 -SAEAQLLQESIR 452
>sp|P03336|GAG_MLVAV Gag polyprotein OS=AKV murine leukemia virus GN=gag PE=1 SV=3
Length = 537
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A + + P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 343 AGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 398
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVLVN 183
P I G LE +L+D+ ++ L +
Sbjct: 399 QSAPDI--GRKLE-----RLEDLKSKTLGD 421
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 120 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
S+Y +F KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|P27460|GAG_MLVCB Gag polyprotein OS=Cas-Br-E murine leukemia virus GN=gag PE=3 SV=3
Length = 536
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 94 AMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 153
A R+PTN A + + P E PSA+ + +KE +R +P+ +E + + W
Sbjct: 342 AGRSPTNLAKVKGITQGPNES----PSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIW 397
Query: 154 AHFPHIHFGLMLEANNQPKLDDVSTRVLVN 183
P I G LE +L+D+ ++ L +
Sbjct: 398 QSAPDI--GRKLE-----RLEDLKSKTLGD 420
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,840,615
Number of Sequences: 539616
Number of extensions: 2916238
Number of successful extensions: 7047
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 7007
Number of HSP's gapped (non-prelim): 75
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)