Query 028980
Match_columns 201
No_of_seqs 124 out of 180
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.8 4.8E-05 1.7E-09 52.7 5.7 47 111-157 3-49 (77)
2 1wz6_A HMG-box transcription f 97.7 6.2E-05 2.1E-09 52.9 5.5 48 110-157 3-50 (82)
3 3nm9_A HMG-D, high mobility gr 97.6 0.00011 3.7E-09 50.8 5.5 43 115-157 4-46 (73)
4 2cs1_A PMS1 protein homolog 1; 97.6 0.00014 5E-09 52.4 6.1 48 111-158 4-51 (92)
5 1hry_A Human SRY; DNA, DNA-bin 97.6 0.0001 3.4E-09 50.9 4.9 46 112-157 2-47 (76)
6 2crj_A SWI/SNF-related matrix- 97.5 0.00017 6E-09 52.0 6.3 48 110-157 3-50 (92)
7 1wgf_A Upstream binding factor 97.5 0.00012 4.1E-09 52.8 5.2 49 109-157 15-63 (90)
8 2e6o_A HMG box-containing prot 97.5 0.00014 4.7E-09 52.1 5.4 49 109-157 12-60 (87)
9 2co9_A Thymus high mobility gr 97.5 0.00016 5.6E-09 53.3 5.8 50 109-158 12-61 (102)
10 1wxl_A Single-strand recogniti 97.5 0.00018 6.2E-09 49.7 5.6 45 112-156 1-45 (73)
11 1j46_A SRY, sex-determining re 97.5 0.0002 6.7E-09 50.9 5.9 46 112-157 2-47 (85)
12 1k99_A Upstream binding factor 97.4 0.0002 6.8E-09 52.8 5.1 48 110-157 6-53 (99)
13 4euw_A Transcription factor SO 97.4 0.00028 9.5E-09 52.6 5.8 49 109-157 24-72 (106)
14 2eqz_A High mobility group pro 97.4 0.00029 9.8E-09 50.1 5.6 47 111-157 12-60 (86)
15 3f27_D Transcription factor SO 97.4 0.00024 8.1E-09 49.8 5.0 46 112-157 4-49 (83)
16 1i11_A Transcription factor SO 97.3 0.00038 1.3E-08 48.8 5.8 44 114-157 4-47 (81)
17 4a3n_A Transcription factor SO 97.3 0.00031 1.1E-08 47.5 4.8 43 115-157 3-45 (71)
18 1ckt_A High mobility group 1 p 97.3 0.00043 1.5E-08 47.0 5.3 43 115-157 2-46 (71)
19 1gt0_D Transcription factor SO 97.3 0.00052 1.8E-08 47.8 5.7 44 114-157 2-45 (80)
20 2gzk_A Sex-determining region 97.2 0.00053 1.8E-08 53.2 5.9 48 110-157 84-131 (159)
21 3u2b_C Transcription factor SO 97.2 0.00045 1.5E-08 47.8 4.7 42 116-157 4-45 (79)
22 2yrq_A High mobility group pro 97.1 0.00069 2.4E-08 53.4 5.7 47 111-157 98-144 (173)
23 2lhj_A High mobility group pro 97.1 0.00025 8.5E-09 51.6 2.9 49 109-157 17-67 (97)
24 1aab_A High mobility group pro 97.1 0.0004 1.4E-08 48.9 3.8 47 111-157 4-52 (83)
25 1cg7_A Protein (NON histone pr 97.0 0.00017 5.8E-09 52.3 1.4 49 109-157 15-63 (93)
26 2lef_A LEF-1 HMG, protein (lym 97.0 0.0013 4.5E-08 46.5 5.6 43 116-158 4-46 (86)
27 2d7l_A WD repeat and HMG-box D 96.9 0.0017 5.8E-08 46.7 6.0 44 114-157 5-49 (81)
28 2yrq_A High mobility group pro 96.9 0.0015 5E-08 51.5 5.8 49 110-158 11-61 (173)
29 3tq6_A Transcription factor A, 96.5 0.002 6.9E-08 53.2 4.1 46 112-157 7-52 (214)
30 3tmm_A Transcription factor A, 96.4 0.0023 7.9E-08 53.7 4.0 48 110-157 37-84 (238)
31 2gzk_A Sex-determining region 96.2 0.0066 2.3E-07 46.9 5.5 47 112-158 2-48 (159)
32 3fgh_A Transcription factor A, 95.8 0.0079 2.7E-07 40.6 3.5 39 115-157 3-41 (67)
33 1l8y_A Upstream binding factor 95.7 0.016 5.6E-07 43.3 5.2 42 115-157 5-46 (91)
34 1v64_A Nucleolar transcription 94.3 0.052 1.8E-06 40.6 4.5 39 116-158 19-57 (108)
35 1v63_A Nucleolar transcription 94.3 0.07 2.4E-06 39.3 5.2 40 117-158 11-50 (101)
36 2yuk_A Myeloid/lymphoid or mix 94.2 0.016 5.5E-07 43.1 1.6 40 116-157 24-63 (90)
37 3tq6_A Transcription factor A, 93.3 0.022 7.5E-07 47.0 1.0 43 112-158 112-154 (214)
38 3tmm_A Transcription factor A, 93.3 0.022 7.5E-07 47.7 1.0 42 112-157 144-185 (238)
39 2cto_A Novel protein; high mob 86.5 0.35 1.2E-05 35.8 2.3 39 116-156 12-53 (93)
40 1x0t_A Ribonuclease P protein 63.7 2.5 8.6E-05 32.3 1.3 34 17-50 67-105 (120)
41 2k3r_A Ribonuclease P protein 60.8 2.7 9.1E-05 32.4 1.0 34 17-50 62-100 (123)
42 2fiy_A Protein FDHE homolog; F 55.5 3.4 0.00012 36.3 0.9 28 11-48 204-231 (309)
43 1wii_A Hypothetical UPF0222 pr 51.2 7.3 0.00025 28.7 2.0 45 15-59 23-67 (85)
44 2ysj_A Tripartite motif-contai 41.3 19 0.00064 22.8 2.6 21 15-44 20-40 (63)
45 2d74_B Translation initiation 38.4 13 0.00043 29.9 1.7 36 14-55 103-141 (148)
46 3uky_C Nuclear CAP-binding pro 29.8 14 0.00049 23.2 0.5 7 113-119 26-32 (32)
47 2g2k_A EIF-5, eukaryotic trans 29.3 31 0.0011 28.3 2.6 38 14-55 95-135 (170)
48 2e9h_A EIF-5, eukaryotic trans 26.1 30 0.001 28.1 1.9 38 14-55 102-142 (157)
49 2e2z_A TIM15; protein import, 25.4 27 0.00091 26.8 1.4 32 17-48 15-47 (100)
50 2ysl_A Tripartite motif-contai 22.9 52 0.0018 21.0 2.3 22 15-45 20-41 (73)
51 3he5_B Synzip2; heterodimeric 22.0 37 0.0013 23.1 1.4 21 120-140 2-22 (52)
52 3j20_W 30S ribosomal protein S 20.6 36 0.0012 24.1 1.2 12 16-27 35-46 (63)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.76 E-value=4.8e-05 Score=52.66 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=42.9
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 111 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 111 PPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 46666788999999999999999999999999999999999999754
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.69 E-value=6.2e-05 Score=52.94 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=43.9
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 110 KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.+|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 466777788999999999999999999999999999999999999764
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.59 E-value=0.00011 Score=50.76 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=40.1
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 115 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 115 RQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 4 PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999999999999765
No 4
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00014 Score=52.41 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=42.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 111 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 111 PPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSE 51 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 355556789999999999999999999999999999999999997653
No 5
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.56 E-value=0.0001 Score=50.94 Aligned_cols=46 Identities=13% Similarity=0.355 Sum_probs=41.6
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
|.+-.|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 4566788999999999999999999999999999999999999764
No 6
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.54 E-value=0.00017 Score=51.99 Aligned_cols=48 Identities=17% Similarity=0.414 Sum_probs=43.5
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 110 KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 446666788999999999999999999999999999999999999764
No 7
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.53 E-value=0.00012 Score=52.78 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=44.1
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 109 ~KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.+.|.+-.|-+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3456666788999999999999999999999999999999999999754
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.52 E-value=0.00014 Score=52.06 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 109 ~KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.+-|.+-.|-++||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 4456677788999999999999999999999999999999999999754
No 9
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.51 E-value=0.00016 Score=53.26 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=44.4
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 109 ~KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
.+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 12 ~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~ 61 (102)
T 2co9_A 12 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGE 61 (102)
T ss_dssp CCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCH
Confidence 34566667889999999999999999999999999999999999997653
No 10
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.50 E-value=0.00018 Score=49.65 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=41.1
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 156 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~ 156 (201)
|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 445567899999999999999999999999999999999999975
No 11
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.49 E-value=0.0002 Score=50.92 Aligned_cols=46 Identities=13% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
|.+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 4555678999999999999999999999999999999999999764
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.41 E-value=0.0002 Score=52.79 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 110 KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999754
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.39 E-value=0.00028 Score=52.58 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 109 ~KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.+.|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 4567777889999999999999999999999999999999999998765
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00029 Score=50.14 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=41.0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 028980 111 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 157 (201)
Q Consensus 111 PPEKRQRvpSaYN~fmK~ei~riK~~~P~i~H--kEaFs~aAknWa~~P 157 (201)
-|.+-.|-+|||..|+++.-+.|++++|+++. .|.-+.++..|+..+
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 35555678899999999999999999999974 999999999998754
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.38 E-value=0.00024 Score=49.79 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=40.0
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+.|-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 ~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 4 TSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 3445678999999999999999999999999999999999998754
No 16
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.34 E-value=0.00038 Score=48.76 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=40.1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 114 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 114 KRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCC
Confidence 34577999999999999999999999999999999999999754
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.30 E-value=0.00031 Score=47.45 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=38.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 115 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 115 RQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 3577899999999999999999999999999999999998754
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.28 E-value=0.00043 Score=47.03 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=38.7
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 028980 115 RQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 157 (201)
Q Consensus 115 RQRvpSaYN~fmK~ei~riK~~~P~i~H--kEaFs~aAknWa~~P 157 (201)
-.|-+|||..|+++.-+.|+++||+++. .|.-+.++..|+..+
T Consensus 2 PKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 3578999999999999999999999976 999999999998643
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.26 E-value=0.00052 Score=47.81 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=40.0
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 114 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 114 KRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 2 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 34577999999999999999999999999999999999999754
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.22 E-value=0.00053 Score=53.16 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=43.0
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 110 KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 345566788999999999999999999999999999999999999754
No 21
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.19 E-value=0.00045 Score=47.79 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=39.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 477899999999999999999999999999999999998754
No 22
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00069 Score=53.44 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=42.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 111 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 111 PPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
-|.+-.|-+|||..|+++...+|++++|+++..|.-+.++..|+..+
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 45566788999999999999999999999999999999999999764
No 23
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.12 E-value=0.00025 Score=51.62 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=44.5
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCC
Q 028980 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFP 157 (201)
Q Consensus 109 ~KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~--HkEaFs~aAknWa~~P 157 (201)
.+.|.+-.|-+|||..|+++.-..|+++||+++ ..|.-+.++..|+..+
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 67 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALS 67 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCC
Confidence 456777788999999999999999999999999 9999999999999754
No 24
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.11 E-value=0.0004 Score=48.87 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 028980 111 PPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 157 (201)
Q Consensus 111 PPEKRQRvpSaYN~fmK~ei~riK~~~P~i~H--kEaFs~aAknWa~~P 157 (201)
-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 52 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMS 52 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45566788999999999999999999999875 899999999998754
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.04 E-value=0.00017 Score=52.28 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=43.8
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 109 NRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 109 ~KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3456666788999999999999999999999999999999999999754
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.98 E-value=0.0013 Score=46.54 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
-|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+.
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 46 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSR 46 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 4679999999999999999999999999999999999997543
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0017 Score=46.75 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=39.6
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCC
Q 028980 114 KRQRVPSAYNQFIKEEIQRIKANNPDIS-HREAFSTAAKNWAHFP 157 (201)
Q Consensus 114 KRQRvpSaYN~fmK~ei~riK~~~P~i~-HkEaFs~aAknWa~~P 157 (201)
+-.|-+|||..|+++.-..|+++||+++ ..|.-+..+..|+..+
T Consensus 5 ~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls 49 (81)
T 2d7l_A 5 SSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLS 49 (81)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCC
Confidence 3456799999999999999999999998 9999999999998754
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.0015 Score=51.54 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=43.1
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCCc
Q 028980 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPD--ISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 110 KPPEKRQRvpSaYN~fmK~ei~riK~~~P~--i~HkEaFs~aAknWa~~Ph 158 (201)
+-|.+-.|-+|||..|+++.-..|+++||+ ++-.|..+.++..|+..+.
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 446666788999999999999999999999 6899999999999987654
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.50 E-value=0.002 Score=53.25 Aligned_cols=46 Identities=30% Similarity=0.530 Sum_probs=41.2
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 3444578999999999999999999999999999999999999765
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.42 E-value=0.0023 Score=53.67 Aligned_cols=48 Identities=29% Similarity=0.479 Sum_probs=43.0
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 110 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 110 KPPEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
+-|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 345666788999999999999999999999999999999999999754
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.24 E-value=0.0066 Score=46.94 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=42.7
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
|++.-|-++||-.|++++-.+|+..||+++..|.-+.++..|+..+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhH
Confidence 56677889999999999999999999999999999999999997653
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=95.78 E-value=0.0079 Score=40.55 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=34.5
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 115 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 115 RQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
-.|-+|||..|+++.-..++..+| .|..+.++..|+..+
T Consensus 3 PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 3 PKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 357789999999999999999988 599999999999764
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=95.68 E-value=0.016 Score=43.33 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 115 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 115 RQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.-|-+|||+.|+.+....+++++|+ ...|.-+.+...|+...
T Consensus 5 PKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls 46 (91)
T 1l8y_A 5 PESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNME 46 (91)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 3467999999999999999999999 88998899999998753
No 34
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=94.28 E-value=0.052 Score=40.56 Aligned_cols=39 Identities=18% Similarity=0.493 Sum_probs=35.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
.|-+|||..|+++.-+.|+ +++..|.-+.++..|+..+.
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 5679999999999999988 89999999999999998653
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=94.27 E-value=0.07 Score=39.35 Aligned_cols=40 Identities=13% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 117 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 117 RvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
|-+|||..|+++.++ +..+|+++..|.-+.++..|+..+.
T Consensus 11 rP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 11 PPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 358999999999964 3344557788999999999997543
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.20 E-value=0.016 Score=43.09 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=33.3
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
.|-||||-.|+.++-.+||++||+++ +.|..+|+.|+..+
T Consensus 24 KRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 24 EMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp GGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 57899999999999999999999975 33566669998754
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=93.33 E-value=0.022 Score=47.01 Aligned_cols=43 Identities=33% Similarity=0.606 Sum_probs=37.1
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 158 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~Ph 158 (201)
|.+-.|-+|||+.|+++...+|+.++|+ |..+.++..|+..+.
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~ 154 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSD 154 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCH
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCH
Confidence 4555778999999999999999998886 899999999998653
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=93.32 E-value=0.022 Score=47.70 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=37.1
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 028980 112 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157 (201)
Q Consensus 112 PEKRQRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~aAknWa~~P 157 (201)
|.+-.|-+|||+.|+++...+|+.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 5566788999999999999999988886 89999999999854
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.47 E-value=0.35 Score=35.77 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccC
Q 028980 116 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA---AKNWAHF 156 (201)
Q Consensus 116 QRvpSaYN~fmK~ei~riK~~~P~i~HkEaFs~a---AknWa~~ 156 (201)
.|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 567999999999999999998 77777776666 8889874
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=63.67 E-value=2.5 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=25.1
Q ss_pred cCCCcceeeeccccCCC-cc----ceeeeecCCCCCccc
Q 028980 17 PCNFCNIVLAVSVPCSS-LL----DIVTVRCGHCSNLWS 50 (201)
Q Consensus 17 ~CnfC~TILaVsVPcss-L~----~tVTVRCGHCtnLls 50 (201)
-|.-|+|+|.=|+=|+- +- ..|.++|+.|.+.--
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 69999999997765541 21 258999999987643
No 41
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=60.83 E-value=2.7 Score=32.42 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=25.0
Q ss_pred cCCCcceeeeccccCCC-cc----ceeeeecCCCCCccc
Q 028980 17 PCNFCNIVLAVSVPCSS-LL----DIVTVRCGHCSNLWS 50 (201)
Q Consensus 17 ~CnfC~TILaVsVPcss-L~----~tVTVRCGHCtnLls 50 (201)
-|.-|+++|.=|+=|+- +- ..|.++|+.|.+.--
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR 100 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMR 100 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 69999999987665541 11 358999999997643
No 42
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.48 E-value=3.4 Score=36.31 Aligned_cols=28 Identities=29% Similarity=0.841 Sum_probs=22.7
Q ss_pred CceeeecCCCcceeeeccccCCCccceeeeecCCCCCc
Q 028980 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNL 48 (201)
Q Consensus 11 E~lCYV~CnfC~TILaVsVPcssL~~tVTVRCGHCtnL 48 (201)
+..=|.+|++|.|- ...|-++|.+|.|-
T Consensus 204 ~G~R~l~Cs~C~t~----------W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 204 TGLRYLSCSLCACE----------WHYVRIKCSHCEES 231 (309)
T ss_dssp CCEEEEEETTTCCE----------EECCTTSCSSSCCC
T ss_pred CCcEEEEeCCCCCE----------EeecCcCCcCCCCC
Confidence 44559999999885 47788899999985
No 43
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=51.25 E-value=7.3 Score=28.71 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=35.8
Q ss_pred eecCCCcceeeeccccCCCccceeeeecCCCCCcccccccccccC
Q 028980 15 YIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQS 59 (201)
Q Consensus 15 YV~CnfC~TILaVsVPcssL~~tVTVRCGHCtnLlsVNmr~ll~s 59 (201)
+-.|-|||..=+|+|=...--.+-++.|+-|.---..++..|.++
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ep 67 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEP 67 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCT
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcc
Confidence 458999999988888888888899999999987655555555443
No 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.33 E-value=19 Score=22.83 Aligned_cols=21 Identities=38% Similarity=0.820 Sum_probs=14.6
Q ss_pred eecCCCcceeeeccccCCCccceeeeecCC
Q 028980 15 YIPCNFCNIVLAVSVPCSSLLDIVTVRCGH 44 (201)
Q Consensus 15 YV~CnfC~TILaVsVPcssL~~tVTVRCGH 44 (201)
-..|..|..++. +.|+..|||
T Consensus 20 ~~~C~IC~~~~~---------~p~~~~CgH 40 (63)
T 2ysj_A 20 EVICPICLDILQ---------KPVTIDCGH 40 (63)
T ss_dssp CCBCTTTCSBCS---------SCEECTTSS
T ss_pred CCCCCcCCchhC---------CeEEeCCCC
Confidence 356888876543 456679999
No 45
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=38.41 E-value=13 Score=29.88 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=27.4
Q ss_pred eeecCCCc---ceeeeccccCCCccceeeeecCCCCCcccccccc
Q 028980 14 CYIPCNFC---NIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAA 55 (201)
Q Consensus 14 CYV~CnfC---~TILaVsVPcssL~~tVTVRCGHCtnLlsVNmr~ 55 (201)
-||.|.-| +|.|.+- + .+...+|.-|..-.+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~k~---~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIKR---D---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCCBS---S---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEEEe---C---CEEEEEecCCCCCccccchh
Confidence 48999999 5777762 2 56778999999999998764
No 46
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=29.84 E-value=14 Score=23.19 Aligned_cols=7 Identities=71% Similarity=1.213 Sum_probs=5.9
Q ss_pred CCCCCCc
Q 028980 113 EKRQRVP 119 (201)
Q Consensus 113 EKRQRvp 119 (201)
-||||+|
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 4899998
No 47
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=29.28 E-value=31 Score=28.33 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=28.8
Q ss_pred eeecCCCc---ceeeeccccCCCccceeeeecCCCCCcccccccc
Q 028980 14 CYIPCNFC---NIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAA 55 (201)
Q Consensus 14 CYV~CnfC---~TILaVsVPcssL~~tVTVRCGHCtnLlsVNmr~ 55 (201)
-||.|.-| +|.|.+.. -+ .+...+|--|....+|.++.
T Consensus 95 ~YVlC~~C~sPdT~L~k~~-~~---r~~~l~C~ACGa~~~V~~~~ 135 (170)
T 2g2k_A 95 KFVLCPECENPETDLHVNP-KK---QTIGNSCKACGYRGMLDTHH 135 (170)
T ss_dssp HHHSCTTTSSSCEEEEEET-TT---TEEEEEETTTCCCCCSCSSS
T ss_pred HeEECCCCCCCccEEEEec-CC---CEEEEEccccCCcccccccc
Confidence 48999999 58887621 12 34668999999999998873
No 48
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=30 Score=28.06 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=28.3
Q ss_pred eeecCCCc---ceeeeccccCCCccceeeeecCCCCCcccccccc
Q 028980 14 CYIPCNFC---NIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAA 55 (201)
Q Consensus 14 CYV~CnfC---~TILaVsVPcssL~~tVTVRCGHCtnLlsVNmr~ 55 (201)
-||.|.-| +|.|.+. .- =.+...+|.-|....+|.++.
T Consensus 102 ~YVlC~~C~sPdT~L~~~-~~---~r~~~l~C~ACGa~~~V~~~~ 142 (157)
T 2e9h_A 102 KFVLCPECENPETDLHVN-PK---KQTIGNSCKACGYRGMLDTHH 142 (157)
T ss_dssp HTTSCTTTCCSCCEEEEE-TT---TTEEEEECSSSCCEEECCCCS
T ss_pred HeEECCCCCCCccEEEEe-cC---CCEEEEEccCCCCCCcccchh
Confidence 48999999 4666652 01 246788999999999998864
No 49
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=25.42 E-value=27 Score=26.77 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=20.2
Q ss_pred cCCCcceeeeccccCCC-ccceeeeecCCCCCc
Q 028980 17 PCNFCNIVLAVSVPCSS-LLDIVTVRCGHCSNL 48 (201)
Q Consensus 17 ~CnfC~TILaVsVPcss-L~~tVTVRCGHCtnL 48 (201)
-|+-|+|-=+-.+-=.+ =--+|-|+|..|.|.
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 48888875432221111 124899999999996
No 50
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.88 E-value=52 Score=21.05 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=15.6
Q ss_pred eecCCCcceeeeccccCCCccceeeeecCCC
Q 028980 15 YIPCNFCNIVLAVSVPCSSLLDIVTVRCGHC 45 (201)
Q Consensus 15 YV~CnfC~TILaVsVPcssL~~tVTVRCGHC 45 (201)
...|..|-..+. +.|+..|||-
T Consensus 20 ~~~C~IC~~~~~---------~~~~~~CgH~ 41 (73)
T 2ysl_A 20 EVICPICLDILQ---------KPVTIDCGHN 41 (73)
T ss_dssp CCBCTTTCSBCS---------SEEECTTCCE
T ss_pred CCEeccCCcccC---------CeEEcCCCCh
Confidence 457888876553 4567789994
No 51
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.01 E-value=37 Score=23.05 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHhhCCCC
Q 028980 120 SAYNQFIKEEIQRIKANNPDI 140 (201)
Q Consensus 120 SaYN~fmK~ei~riK~~~P~i 140 (201)
||-|.|++..|.|+|..|-.+
T Consensus 2 sarnaylrkkiarlkkdnlql 22 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhh
Confidence 688999999999999877544
No 52
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.61 E-value=36 Score=24.09 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=10.1
Q ss_pred ecCCCcceeeec
Q 028980 16 IPCNFCNIVLAV 27 (201)
Q Consensus 16 V~CnfC~TILaV 27 (201)
|.|..|.|+|+=
T Consensus 35 V~C~~Cgt~L~~ 46 (63)
T 3j20_W 35 VRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEE
T ss_pred EEccCcCCEEec
Confidence 789999999873
Done!