BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028981
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
Complex With Substrate
pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
(Re-Refined)
Length = 289
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 45 VAPEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWE 104
V PE+ +FR+Y + + V Y+L H +QT DFV + R +Y +M+I E
Sbjct: 21 VDPEMAKSKDSFRNYTSGPLLDR-VFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIME 79
Query: 105 CCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164
+L+++VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGK++ L
Sbjct: 80 AVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---W 136
Query: 165 GLPQWAVVGDTFPLGC 180
G PQWAVVGDTFP+GC
Sbjct: 137 GEPQWAVVGDTFPVGC 152
>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 246
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 73 YRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSA 132
Y+L H +QT DFV+ ++ + ++ E +LL+ +VDESD D P H Q+A
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65
Query: 133 EAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGC 180
E IRK +PD+DW HL L+HDLGKVL L G PQWAVVGDTFP+GC
Sbjct: 66 EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGC 110
>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 240
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 68/108 (62%), Gaps = 9/108 (8%)
Query: 73 YRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSA 132
Y+L H +QT DFV+ ++ + ++ E +LL+ +VDES P H Q+A
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62
Query: 133 EAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGC 180
E IRK +PD+DW HL L+HDLGKVL L G PQWAVVGDTFP+GC
Sbjct: 63 EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGC 107
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 109 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 153
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 154 NLVKKYGLIPKDLYGDLP 171
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 109 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 153
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 154 NLVKKYGLIPKDLYGDLP 171
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 122 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 166
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 167 NLVKKYGLIPKDLYGDLP 184
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 105 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 149
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 150 NLVKKYGLIPKDLYGDLP 167
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 122 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 166
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 167 NLVKKYGLIPKDLYGDLP 184
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 109 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 153
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 154 NLVKKYGLIPKDLYGDLP 171
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 109 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 153
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 154 NLVKKYGLIPKDLYGDLP 171
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 109 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 153
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 154 NLVKKYGLIPKDLYGDLP 171
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 92 YAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151
Y KL+KA L+++V +D D+D +Q+LL + P ED + +
Sbjct: 109 YDKLEKANY-------FLDQIVSSADQDIDSRLVQYLLAA--------PTEDGGQYSMFL 153
Query: 152 HDLGKVLTLPK--FGGLP 167
+ + K +PK +G LP
Sbjct: 154 NLVKKYGLIPKDLYGDLP 171
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 123 PQIQHLL-QSAEAIRKDYPDEDWLHLTALIHDL-GKVLTLPKFGGLPQWAVVGDTFPLGC 180
P Q++L +S + + ++PD+DW H++ DL K+L L V+ + GC
Sbjct: 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC 302
Query: 181 A 181
A
Sbjct: 303 A 303
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 123 PQIQHLL-QSAEAIRKDYPDEDWLHLTALIHDL-GKVLTLPKFGGLPQWAVVGDTFPLGC 180
P Q++L +S + + ++PD+DW H++ DL K+L L V+ + GC
Sbjct: 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC 302
Query: 181 A 181
A
Sbjct: 303 A 303
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 92 YAKLDKAEMSIWECCELLNEVVD---ESDPDLDEPQIQHLLQ 130
Y+KL K+ I+ CE NE +D ++ + P+IQ LL+
Sbjct: 196 YSKLAKSFQEIYTICESNNEKIDITIDAANGVGAPKIQELLE 237
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 64 ERQKSVEEFYRLQHINQTYD-FVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDE 122
ERQ+ + E L + + D F KM E + M + + CE L E ++E++ +
Sbjct: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214
Query: 123 PQIQHLLQSAEAIRKDYPDEDWLHLTAL 150
++ ++ EA + +W+ LT L
Sbjct: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVL 242
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 64 ERQKSVEEFYRLQHINQTYD-FVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDE 122
ERQ+ + E L + + D F KM E + M + + CE L E ++E++ +
Sbjct: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214
Query: 123 PQIQHLLQSAEAIRKDYPDEDWLHLTAL 150
++ ++ EA + +W+ LT L
Sbjct: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVL 242
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 35 VPKTMPNDGFVAPEINSFGKTFRDYNAECERQKSVEEFYRL--QHINQTYDFV 85
+P + N+ FV P I GK D+NA FY + +H N YDFV
Sbjct: 131 LPAYLANETFVTPVIVQSGKIDADFNA---------TFYSMANKHFND-YDFV 173
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 128 LLQSAEAIRKDYPDEDWLHLTALIHDL 154
L +S + + ++PD+DW H+++ DL
Sbjct: 249 LFESIQEGKYEFPDKDWAHISSEAKDL 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,670,653
Number of Sequences: 62578
Number of extensions: 288277
Number of successful extensions: 667
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 27
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)