BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028981
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1S0|MIOX4_ARATH Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MIOX4 PE=2 SV=1
Length = 317
Score = 299 bits (765), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 145/195 (74%), Positives = 163/195 (83%), Gaps = 3/195 (1%)
Query: 1 MTILIDQPELIGSRAEDQNLQEQTNELVLDGGFVVPKTMPND--GFVAPEINSFGKTFRD 58
MTI +++P A +++ + EL LDGGF +PK ND F+APE+N+FG+ FRD
Sbjct: 1 MTISVEKPIFEEVSAFEKS-GDNIGELKLDGGFSMPKMDTNDDEAFLAPEMNAFGRQFRD 59
Query: 59 YNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDP 118
Y+ E ERQK VEEFYRLQHINQT DFVKKMR EY KLDK MSIWECCELLNEVVDESDP
Sbjct: 60 YDVESERQKGVEEFYRLQHINQTVDFVKKMRAEYGKLDKMVMSIWECCELLNEVVDESDP 119
Query: 119 DLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPL 178
DLDEPQIQHLLQSAEAIRKDYP+EDWLHLTALIHDLGKV+TLP+FGGLPQWAVVGDTFP+
Sbjct: 120 DLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVITLPQFGGLPQWAVVGDTFPV 179
Query: 179 GCAFDESNVHHKVSI 193
GCAFDESNVHHK +
Sbjct: 180 GCAFDESNVHHKYFV 194
>sp|O82200|MIOX2_ARATH Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2
Length = 317
Score = 297 bits (760), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 164/200 (82%), Gaps = 5/200 (2%)
Query: 1 MTILIDQPELIGSRAEDQNLQEQTNELVLDGGFVVPKTMPNDGFVAPEINSFGKTFRDY- 59
MTIL++ E + ++E+ NELVLDGGFVVPK+ D F AP++N G +FRDY
Sbjct: 1 MTILVEHFVPDSRVDEKKVIEERDNELVLDGGFVVPKSKETDAFDAPDMNFLGHSFRDYE 60
Query: 60 NAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPD 119
N E ERQ+ VEEFYR+QHI+QTYDFVKKMR+EY KL+K EMSIWECCELLN VVDESDPD
Sbjct: 61 NGESERQQGVEEFYRMQHIHQTYDFVKKMRKEYGKLNKMEMSIWECCELLNNVVDESDPD 120
Query: 120 LDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLG 179
LDEPQIQHLLQ+AEAIR+DYPDEDWLHLTALIHDLGKVL LP+FGGLPQWAVVGDTFP+G
Sbjct: 121 LDEPQIQHLLQTAEAIRRDYPDEDWLHLTALIHDLGKVLLLPEFGGLPQWAVVGDTFPVG 180
Query: 180 CAFDESNVHHKVSIFSFKNN 199
C FD +N+HHK FK N
Sbjct: 181 CTFDSANIHHKY----FKGN 196
>sp|Q9FJU4|MIOX5_ARATH Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MIOX5 PE=2 SV=1
Length = 314
Score = 269 bits (688), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 135/192 (70%), Positives = 151/192 (78%), Gaps = 6/192 (3%)
Query: 1 MTILIDQPELIGSRAEDQNLQEQTNELVLDGGFVVPKTMPNDG-FVAPEINSFGKTFRDY 59
M I ++ P + ED Q +T EL LD + K +D F+APE+N+FG+ FRDY
Sbjct: 1 MNISVENPVFV---HEDSTTQ-KTGELRLDSDIPMSKISSDDEVFLAPEMNAFGRQFRDY 56
Query: 60 -NAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDP 118
+ ERQKSVE FY QH NQT DFV+KMR EY KLDK M+IWECCEL EVVDESDP
Sbjct: 57 TDTNSERQKSVEHFYATQHTNQTLDFVQKMRSEYGKLDKMVMNIWECCELSKEVVDESDP 116
Query: 119 DLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPL 178
DLDEPQIQHLLQSAEAIRKDYP+EDWLHLTALIHDLGKVLTLP+FGGLPQWAVVGDTFP+
Sbjct: 117 DLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVLTLPQFGGLPQWAVVGDTFPV 176
Query: 179 GCAFDESNVHHK 190
GCAFDESNVHHK
Sbjct: 177 GCAFDESNVHHK 188
>sp|Q8L799|MIOX1_ARATH Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1
Length = 311
Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/205 (65%), Positives = 151/205 (73%), Gaps = 21/205 (10%)
Query: 1 MTILIDQPELIGSRAED------QNLQEQTNELVLDGGFVVPKTMPNDGFVAPEINSFGK 54
MTILID+ ++ N +E+ ELVLD GF P T NSFG+
Sbjct: 1 MTILIDRHSDQNDAGDEIVEKNQGNGKEEETELVLDAGFEAPHT-----------NSFGR 49
Query: 55 TFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVD 114
TFRDY+AE ER++ VEEFYR+ HI QT DFV+KMREEY KL++ EMSIWECCELLNE +D
Sbjct: 50 TFRDYDAESERRRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFID 109
Query: 115 ESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGD 174
ESDPDLDEPQI+HLLQ+AEAIRKDYPDEDWLHLT LIHDLGKVL FG LPQWAVVGD
Sbjct: 110 ESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGD 169
Query: 175 TFPLGCAFDESNVHHKVSIFSFKNN 199
TFP+GCAFDES VHHK FK N
Sbjct: 170 TFPVGCAFDESIVHHKY----FKEN 190
>sp|Q5Z8T3|MIOX_ORYSJ Probable inositol oxygenase OS=Oryza sativa subsp. japonica
GN=Os06g0561000 PE=2 SV=1
Length = 308
Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/193 (65%), Positives = 146/193 (75%), Gaps = 14/193 (7%)
Query: 1 MTILIDQPEL--IGSR-AEDQNLQEQTNELVLDGGFVVPKTMPNDGFVAPEINSFGKTFR 57
MTI I+QP L I R + ELVLDGGFVVP + N+FG FR
Sbjct: 1 MTITIEQPHLDAIADRKVAGGGGGDNAAELVLDGGFVVPDS-----------NAFGNAFR 49
Query: 58 DYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESD 117
+Y AE ER+++VEEFYR+ HINQTYDFV++MREEY ++DK EM IWEC ELLNE +D+SD
Sbjct: 50 NYEAESERKETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEFIDDSD 109
Query: 118 PDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFP 177
PDLD PQI+HLLQ+AEAIRKD+PDEDWLHLT LIHDLGKVL P FG LPQW+VVGDTFP
Sbjct: 110 PDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFP 169
Query: 178 LGCAFDESNVHHK 190
+GCAFDE NVH K
Sbjct: 170 VGCAFDECNVHFK 182
>sp|Q54GH4|MIOX_DICDI Inositol oxygenase OS=Dictyostelium discoideum GN=miox PE=3 SV=1
Length = 292
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 97/143 (67%), Gaps = 6/143 (4%)
Query: 48 EINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKA-EMSIWECC 106
EI + FR+Y +R V E YR H QTYD+ + +++Y++LD + +M +WE
Sbjct: 24 EITKEVEEFRNYENSEDR---VSEAYRNSHTYQTYDYATEKKKQYSQLDTSIKMGLWEAA 80
Query: 107 ELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDE--DWLHLTALIHDLGKVLTLPKFG 164
ELLN ++DESDPD + PQI H LQ+AEAIRK YPD DW HLT IHDLGKVL KF
Sbjct: 81 ELLNTIIDESDPDSNIPQINHCLQTAEAIRKVYPDSKYDWFHLTGFIHDLGKVLLSKKFK 140
Query: 165 GLPQWAVVGDTFPLGCAFDESNV 187
PQWA VGDTFPLGC FDESN+
Sbjct: 141 EQPQWATVGDTFPLGCKFDESNI 163
>sp|Q9QXN5|MIOX_MOUSE Inositol oxygenase OS=Mus musculus GN=Miox PE=1 SV=2
Length = 285
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 45 VAPEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWE 104
V PE+ +FR+Y + + V Y+L H +QT DFV + R +Y +M+I E
Sbjct: 17 VDPEMAKSKDSFRNYTSGPLLDR-VFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIME 75
Query: 105 CCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164
+L+++VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGK++ L
Sbjct: 76 AVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---W 132
Query: 165 GLPQWAVVGDTFPLGC 180
G PQWAVVGDTFP+GC
Sbjct: 133 GEPQWAVVGDTFPVGC 148
>sp|Q9QXN4|MIOX_RAT Inositol oxygenase OS=Rattus norvegicus GN=Miox PE=2 SV=2
Length = 285
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 45 VAPEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWE 104
V PE+ +FR+Y + + V Y+L H +QT DFV + R ++ +M++ E
Sbjct: 17 VDPEMAKSKGSFRNYTSGPLLDR-VFTTYKLMHTHQTVDFVMRKRIQFGSFSYKKMTVME 75
Query: 105 CCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164
++L+++VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGK+L L
Sbjct: 76 AVDMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKILAL---W 132
Query: 165 GLPQWAVVGDTFPLGC 180
G PQWAVVGDTFP+GC
Sbjct: 133 GEPQWAVVGDTFPVGC 148
>sp|Q9UGB7|MIOX_HUMAN Inositol oxygenase OS=Homo sapiens GN=MIOX PE=1 SV=1
Length = 285
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 4/136 (2%)
Query: 45 VAPEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWE 104
V PE+ +FR+Y + + V Y+L H +QT DFV+ ++ +M++ E
Sbjct: 17 VDPEVAKDKASFRNYTSGPLLDR-VFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVME 75
Query: 105 CCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164
+LL+ +VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGKVL L
Sbjct: 76 AVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLAL---F 132
Query: 165 GLPQWAVVGDTFPLGC 180
G PQWAVVGDTFP+GC
Sbjct: 133 GEPQWAVVGDTFPVGC 148
>sp|Q5REY9|MIOX_PONAB Inositol oxygenase OS=Pongo abelii GN=MIOX PE=2 SV=1
Length = 285
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 4/136 (2%)
Query: 45 VAPEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWE 104
V PE+ +FR+Y + + V Y+L H +QT DFV+ ++ +M++ E
Sbjct: 17 VDPEMAKDKASFRNYTSGPLLDR-VFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVME 75
Query: 105 CCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164
+LL+ +VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGKVL L
Sbjct: 76 AVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLAL---F 132
Query: 165 GLPQWAVVGDTFPLGC 180
G PQWAVVGDTFP+GC
Sbjct: 133 GEPQWAVVGDTFPVGC 148
>sp|Q8WN98|MIOX_PIG Inositol oxygenase OS=Sus scrofa GN=MIOX PE=1 SV=1
Length = 282
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 47 PEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECC 106
PE +FR+Y + + V Y+L H QT DFV+K ++ M++ E
Sbjct: 16 PEAAKDKGSFRNYTSGPLLDR-VFRTYKLMHTWQTVDFVRKKHAQFGGFSYKRMTVLEAV 74
Query: 107 ELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGL 166
++L+ +VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGKVL L G
Sbjct: 75 DMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLVL---AGE 131
Query: 167 PQWAVVGDTFPLGC 180
PQWAVVGDTFP+GC
Sbjct: 132 PQWAVVGDTFPVGC 145
>sp|A7MBE4|MIOX_BOVIN Inositol oxygenase OS=Bos taurus GN=MIOX PE=2 SV=1
Length = 285
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 47 PEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECC 106
PE +FR+Y + + V Y+L H QT DFV++ ++ M++ E
Sbjct: 19 PEAAKDKDSFRNYTSGPLLDR-VFATYKLMHTWQTVDFVRRKHAQFGGFSYKRMTVMEAV 77
Query: 107 ELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGL 166
++L+ +VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGKVL L G
Sbjct: 78 DMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLAL---AGE 134
Query: 167 PQWAVVGDTFPLGC 180
PQWAVVGDTFP+GC
Sbjct: 135 PQWAVVGDTFPVGC 148
>sp|Q4V8T0|MIOX_DANRE Inositol oxygenase OS=Danio rerio GN=miox PE=2 SV=1
Length = 278
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 3/115 (2%)
Query: 73 YRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSA 132
Y+L H +QT DFVK+ + ++ +S+ + + L+E+VDESDPD+D P H Q+A
Sbjct: 37 YKLMHTHQTLDFVKQKHQVWSNCSHFSLSMMDSIDSLDELVDESDPDVDFPNSFHAFQTA 96
Query: 133 EAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNV 187
E IR+++PD+DW L LIHD+GKV+ L PQWAVVGDT+P+GC F S V
Sbjct: 97 EGIRREHPDKDWFQLVGLIHDVGKVMAL---YSEPQWAVVGDTYPVGCKFQNSIV 148
>sp|P42237|GUDP_BACSU Probable glucarate transporter OS=Bacillus subtilis (strain 168)
GN=gudP PE=3 SV=2
Length = 455
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 123 PQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG---GLPQWAVVGDTFPLG 179
P I +L S I +Y D WL + +++L FG G WAVV DT P
Sbjct: 327 PIIAGMLLSCSMIVCNYTDSAWLVVV--------IMSLAFFGKGFGALGWAVVSDTSPKE 378
Query: 180 CA 181
CA
Sbjct: 379 CA 380
>sp|A0RR46|SELA_CAMFF L-seryl-tRNA(Sec) selenium transferase OS=Campylobacter fetus
subsp. fetus (strain 82-40) GN=selA PE=3 SV=1
Length = 442
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 10 LIGSRAEDQNLQEQTNELV-LDGGFVVPKTMPNDGFVAPEINSFGKT-FRDY-NAECERQ 66
++ S A+++ + ELV + G F VP+ M N G + EI + KT DY N+ E
Sbjct: 149 ILNSFADEKEVLVSRGELVEIGGSFRVPEVMKNSGAILKEIGTTNKTHLSDYENSINENT 208
Query: 67 KSVEEFYRLQHINQTYDFVKKMRE----EYAKLDKAEMSIWECCELLNEVVDESDPDL-- 120
+ + ++ YD V E + AKL + I +L + V+ L
Sbjct: 209 AMILKVHK-----SNYDIVGFSSEVSINDIAKLTQKR-GILNYYDLGSGYVNTLPYSLSK 262
Query: 121 DEPQIQHLLQSA 132
DEP ++ L+QS
Sbjct: 263 DEPNVKKLIQSG 274
>sp|Q31HI0|LEU3_THICR 3-isopropylmalate dehydrogenase OS=Thiomicrospira crunogena (strain
XCL-2) GN=leuB PE=3 SV=1
Length = 357
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 68 SVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQH 127
S E R+ H+ +D K ++ +DKA ++ E E+ E+VDE + E ++QH
Sbjct: 165 SESEIKRIAHV--AFDAAMKRNKKLCSVDKA--NVLEVTEMWREIVDEVAKEYPEVEVQH 220
Query: 128 L 128
+
Sbjct: 221 M 221
>sp|Q0TTA0|AROB_CLOP1 3-dehydroquinate synthase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=aroB PE=3 SV=1
Length = 350
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 102 IWECCELLNEVVDESDPDLDEPQIQHLLQS-AEAIRKDYPDEDWLHLTAL 150
I+ECC + EVV+ + DL E I + + AI + Y E + H A+
Sbjct: 218 IYECCNIKREVVENDEKDLGERMILNFGHTLGHAIEQIYNYETYSHGEAV 267
>sp|C1EKC8|YHAM_BACC3 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain 03BB102)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|B9ISF7|YHAM_BACCQ 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain Q1) GN=yhaM
PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q81U72|YHAM_BACAN 3'-5' exoribonuclease YhaM OS=Bacillus anthracis GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|C3LCZ8|YHAM_BACAC 3'-5' exoribonuclease YhaM OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|C3P2S0|YHAM_BACAA 3'-5' exoribonuclease YhaM OS=Bacillus anthracis (strain A0248)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q6HME9|YHAM_BACHK 3'-5' exoribonuclease YhaM OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q63EZ0|YHAM_BACCZ 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain ZK / E33L)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q81H06|YHAM_BACCR 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|B7HFZ0|YHAM_BACC4 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain B4264)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|B7IK95|YHAM_BACC2 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain G9842)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q73CF4|YHAM_BACC1 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain ATCC 10987)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|A0RAN0|YHAM_BACAH 3'-5' exoribonuclease YhaM OS=Bacillus thuringiensis (strain Al
Hakam) GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q9CZT4|RPC5_MOUSE DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus
GN=Polr3e PE=1 SV=2
Length = 710
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 42 DGFVAPEINSFGKTFRDYNAECERQKS------VEEFYRLQHINQT-YDFVKKMREEYAK 94
DG A E +++ D C Q + YR ++ T + ++R ++
Sbjct: 82 DGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYRQGELHLTPLHGILQLRPSFSY 141
Query: 95 LDKAEMSIWECCELLNEVVDESDPDLDE--PQI-------------QHLLQSAEAIRKDY 139
LDKA+ E E NE D S + +E QI Q +QS E ++K +
Sbjct: 142 LDKADAKHRER-EAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKKH 200
Query: 140 PDEDWLHL 147
+E W+HL
Sbjct: 201 AEEPWVHL 208
>sp|B7JCU0|YHAM_BACC0 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain AH820)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|B7HYS8|YHAM_BACC7 3'-5' exoribonuclease YhaM OS=Bacillus cereus (strain AH187)
GN=yhaM PE=3 SV=1
Length = 314
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|A7GLX6|YHAM_BACCN 3'-5' exoribonuclease YhaM OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=yhaM PE=3 SV=1
Length = 318
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160
+L A+AI YP D+D L+ ++HDLGKV+ L
Sbjct: 167 MLDLAKAISTLYPSLDKDLLYAGVILHDLGKVIEL 201
>sp|Q8EN68|LEU3_OCEIH 3-isopropylmalate dehydrogenase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=leuB PE=3
SV=1
Length = 366
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 66 QKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQI 125
Q S EE R+ + + ++ + ++ +DKA ++ E +L E+V+E D + +
Sbjct: 158 QYSREEIERI--VERGFEAARIRKKHLTSVDKA--NVLESSKLWREIVEEKSKDYPDVAV 213
Query: 126 QHLLQSAEAIR 136
HLL A A++
Sbjct: 214 NHLLVDAAAMK 224
>sp|P38330|RMD9L_YEAST Protein RMD9-like, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR238C PE=1 SV=1
Length = 731
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 50 NSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELL 109
+S TF D E ++ F LQ+I QTY+ +K + E + + A+ ++W +L
Sbjct: 458 SSLNDTFFDIFFENYAVDKMQGFQTLQNIIQTYNNIKHIDEPFFNIILAKCTVWHDRSIL 517
Query: 110 NEVVDES 116
E +D+S
Sbjct: 518 -EYIDKS 523
>sp|Q65LJ9|ADDA_BACLD ATP-dependent helicase/nuclease subunit A OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=addA PE=3 SV=1
Length = 1230
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 111 EVVDESDPDLDEPQIQHLLQSAEAIRKDYPD-EDWLHLTALIHDLG---KVLTLP 161
E+VD D + +QHL++ + +PD E WLH A ++D KV LP
Sbjct: 163 ELVDRYTTDRHDLDLQHLVKRVYEFSRSHPDPEGWLHSLAELYDAASDTKVEALP 217
>sp|Q6FML6|RMD9L_CANGA Protein RMD9-like, mitochondrial OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CAGL0K07007g PE=3 SV=1
Length = 736
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 51 SFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLN 110
S TF D E V+ F LQ+I Q Y +K + E + + A+ ++W +L
Sbjct: 433 SLNDTFFDIFFENYANDKVQGFPMLQNIIQNYHNMKNIDEPFFNIILAKCTVWHDRTIL- 491
Query: 111 EVVDESDPDLDEPQI----QHLLQSAEAIRKDYPDE---DWLHLTALIHDLGKVLTLPKF 163
E +D S + P+ + LL+S +I E W++L ++G+ +F
Sbjct: 492 EYIDNSYDAFNIPKTIVAYRILLKSMGSIDDVTTQEILQRWINLICKSDEIGQ-----RF 546
Query: 164 GGLPQWAVVGD 174
WA + D
Sbjct: 547 IANADWAALRD 557
>sp|Q9NVU0|RPC5_HUMAN DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens
GN=POLR3E PE=1 SV=1
Length = 708
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 42 DGFVAPEINSFGKTFRDYNAECERQKS------VEEFYRLQHINQT-YDFVKKMREEYAK 94
DG A E +++ D C Q + YR ++ T + ++R ++
Sbjct: 82 DGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSY 141
Query: 95 LDKAEMSIWECCELLNEVVDES--DPDLDEPQI-------------QHLLQSAEAIRKDY 139
LDKA+ E E NE D S + + D QI Q +QS E ++K +
Sbjct: 142 LDKADAKHRER-EAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKH 200
Query: 140 PDEDWLHL 147
+E W+HL
Sbjct: 201 AEEPWVHL 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,847,310
Number of Sequences: 539616
Number of extensions: 3528364
Number of successful extensions: 10289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 10260
Number of HSP's gapped (non-prelim): 54
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)