Query 028983
Match_columns 201
No_of_seqs 161 out of 1158
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03162 Y_phosphatase2: Tyros 100.0 6.2E-43 1.3E-47 280.4 12.1 151 51-201 1-151 (164)
2 KOG1572 Predicted protein tyro 100.0 8.1E-36 1.8E-40 247.5 14.6 158 43-200 46-207 (249)
3 smart00195 DSPc Dual specifici 99.9 6.3E-23 1.4E-27 158.4 13.3 127 58-195 2-131 (138)
4 TIGR01244 conserved hypothetic 99.9 3.3E-22 7.2E-27 155.5 14.2 117 57-180 2-124 (135)
5 PF13350 Y_phosphatase3: Tyros 99.9 6.1E-23 1.3E-27 163.8 9.4 121 58-180 14-163 (164)
6 cd00127 DSPc Dual specificity 99.9 3E-22 6.6E-27 153.9 12.4 130 57-195 2-134 (139)
7 PTZ00242 protein tyrosine phos 99.8 3.2E-20 7E-25 149.1 15.3 136 56-198 10-156 (166)
8 PTZ00393 protein tyrosine phos 99.8 2.6E-19 5.6E-24 150.5 15.9 127 64-198 94-227 (241)
9 PF00782 DSPc: Dual specificit 99.8 1.3E-19 2.9E-24 138.6 11.2 122 64-195 1-126 (133)
10 PF04273 DUF442: Putative phos 99.8 1E-19 2.2E-24 137.1 9.9 101 57-164 2-108 (110)
11 PRK12361 hypothetical protein; 99.8 2.3E-18 5.1E-23 160.7 14.9 134 56-196 94-233 (547)
12 PLN02727 NAD kinase 99.8 3E-18 6.6E-23 164.7 12.1 102 63-168 262-369 (986)
13 KOG1720 Protein tyrosine phosp 99.7 2.5E-17 5.5E-22 135.1 12.6 132 47-186 43-192 (225)
14 COG3453 Uncharacterized protei 99.7 1.2E-16 2.6E-21 120.5 12.2 113 56-175 2-120 (130)
15 COG2365 Protein tyrosine/serin 99.7 7.7E-17 1.7E-21 137.2 7.8 127 55-185 45-180 (249)
16 PF05706 CDKN3: Cyclin-depende 99.7 4.5E-16 9.8E-21 124.3 10.5 99 72-174 61-168 (168)
17 KOG1718 Dual specificity phosp 99.7 1.1E-15 2.5E-20 121.7 11.8 132 55-195 15-147 (198)
18 KOG1716 Dual specificity phosp 99.6 4.5E-15 9.7E-20 128.6 12.2 135 54-196 72-209 (285)
19 KOG1719 Dual specificity phosp 99.6 2.5E-14 5.4E-19 112.7 11.2 116 64-185 32-153 (183)
20 KOG1717 Dual specificity phosp 99.6 2.4E-14 5.2E-19 121.5 9.9 127 59-195 174-304 (343)
21 COG2453 CDC14 Predicted protei 99.4 4.3E-12 9.2E-17 103.1 9.6 75 102-180 68-146 (180)
22 KOG2836 Protein tyrosine phosp 99.3 1E-10 2.3E-15 90.5 12.4 127 65-198 20-154 (173)
23 smart00012 PTPc_DSPc Protein t 99.0 8.9E-10 1.9E-14 79.6 6.7 82 108-193 4-97 (105)
24 smart00404 PTPc_motif Protein 99.0 8.9E-10 1.9E-14 79.6 6.7 82 108-193 4-97 (105)
25 KOG2283 Clathrin coat dissocia 98.9 2.3E-09 5E-14 97.7 7.9 139 55-198 13-172 (434)
26 PF14566 PTPlike_phytase: Inos 98.9 4.8E-09 1E-13 82.8 7.8 63 98-164 84-147 (149)
27 cd00047 PTPc Protein tyrosine 98.6 1.5E-07 3.3E-12 78.4 8.8 68 127-195 148-225 (231)
28 smart00194 PTPc Protein tyrosi 98.6 3E-07 6.5E-12 78.0 9.5 69 126-195 175-252 (258)
29 PRK15375 pathogenicity island 98.4 1.8E-06 3.9E-11 79.8 9.9 54 144-198 469-525 (535)
30 KOG2386 mRNA capping enzyme, g 98.4 1.1E-06 2.4E-11 79.0 7.3 108 73-183 52-167 (393)
31 PHA02740 protein tyrosine phos 98.3 5.5E-06 1.2E-10 72.5 11.2 53 140-193 220-278 (298)
32 PHA02742 protein tyrosine phos 98.3 3.5E-06 7.5E-11 73.8 9.6 52 141-193 229-286 (303)
33 PHA02747 protein tyrosine phos 98.3 5.2E-06 1.1E-10 73.0 9.8 51 142-193 230-286 (312)
34 PHA02746 protein tyrosine phos 98.3 5.6E-06 1.2E-10 73.1 10.0 52 141-193 247-304 (323)
35 COG5350 Predicted protein tyro 98.2 2.6E-05 5.5E-10 61.8 10.2 120 76-200 26-152 (172)
36 PF00102 Y_phosphatase: Protei 98.2 4.5E-06 9.6E-11 68.7 6.1 69 127-196 153-230 (235)
37 PHA02738 hypothetical protein; 98.1 2E-05 4.3E-10 69.5 9.9 51 141-192 227-283 (320)
38 COG5599 PTP2 Protein tyrosine 98.1 2.8E-06 6.2E-11 72.6 3.6 38 127-164 202-241 (302)
39 KOG0791 Protein tyrosine phosp 97.7 0.00013 2.9E-09 64.9 7.9 91 105-195 250-346 (374)
40 KOG0789 Protein tyrosine phosp 97.6 0.00024 5.1E-09 63.8 7.7 55 140-195 298-359 (415)
41 KOG0792 Protein tyrosine phosp 97.5 0.00032 7E-09 69.4 8.0 54 127-180 1046-1108(1144)
42 KOG0790 Protein tyrosine phosp 97.3 0.00024 5.2E-09 64.8 4.6 52 109-163 417-473 (600)
43 KOG4228 Protein tyrosine phosp 97.0 0.00029 6.3E-09 70.0 2.0 83 114-199 703-793 (1087)
44 cd01518 RHOD_YceA Member of th 95.6 0.073 1.6E-06 38.3 7.3 29 139-169 59-87 (101)
45 cd01448 TST_Repeat_1 Thiosulfa 95.6 0.17 3.8E-06 37.5 9.5 84 84-169 16-106 (122)
46 KOG0793 Protein tyrosine phosp 95.5 0.03 6.5E-07 54.0 5.9 41 140-180 926-970 (1004)
47 PLN02160 thiosulfate sulfurtra 95.2 0.15 3.3E-06 39.3 8.3 95 73-180 20-122 (136)
48 cd01523 RHOD_Lact_B Member of 94.5 0.28 6.1E-06 35.0 7.6 28 140-169 60-87 (100)
49 COG0607 PspE Rhodanese-related 94.4 0.29 6.2E-06 35.1 7.6 75 75-169 12-87 (110)
50 KOG4228 Protein tyrosine phosp 94.3 0.024 5.2E-07 56.9 2.1 30 140-169 1017-1046(1087)
51 cd01533 4RHOD_Repeat_2 Member 94.1 0.15 3.3E-06 37.1 5.5 42 126-169 51-92 (109)
52 KOG4471 Phosphatidylinositol 3 94.1 0.066 1.4E-06 50.8 4.3 26 139-164 372-397 (717)
53 PF06602 Myotub-related: Myotu 93.9 0.11 2.4E-06 46.6 5.4 27 139-165 229-255 (353)
54 cd01519 RHOD_HSP67B2 Member of 93.7 0.35 7.5E-06 34.7 6.8 76 84-169 16-92 (106)
55 PF04179 Init_tRNA_PT: Initiat 93.6 0.2 4.4E-06 46.4 6.7 101 59-164 291-400 (451)
56 KOG1530 Rhodanese-related sulf 93.4 0.45 9.8E-06 36.9 7.1 79 76-163 31-110 (136)
57 PRK01415 hypothetical protein; 92.6 0.51 1.1E-05 40.4 7.1 40 139-180 169-212 (247)
58 PF00581 Rhodanese: Rhodanese- 92.6 1.3 2.8E-05 31.5 8.4 81 73-161 3-86 (113)
59 PF04343 DUF488: Protein of un 92.5 0.57 1.2E-05 35.3 6.6 42 75-116 6-54 (122)
60 smart00450 RHOD Rhodanese Homo 92.2 0.95 2.1E-05 31.1 7.1 29 139-169 54-82 (100)
61 PRK00142 putative rhodanese-re 90.8 1.2 2.6E-05 39.3 7.7 39 140-180 170-212 (314)
62 KOG1089 Myotubularin-related p 90.7 0.36 7.7E-06 45.8 4.5 26 140-165 343-368 (573)
63 PRK05600 thiamine biosynthesis 89.5 0.95 2E-05 40.9 6.2 26 142-169 333-358 (370)
64 cd01527 RHOD_YgaP Member of th 89.0 2.6 5.7E-05 29.8 7.1 27 140-168 53-79 (99)
65 cd01522 RHOD_1 Member of the R 88.6 4.8 0.00011 29.7 8.6 29 139-169 62-90 (117)
66 PF14671 DSPn: Dual specificit 87.9 1.2 2.6E-05 34.9 5.0 56 125-180 45-110 (141)
67 PRK05320 rhodanese superfamily 87.4 2.2 4.7E-05 36.6 6.8 28 140-169 174-201 (257)
68 PRK11784 tRNA 2-selenouridine 86.5 3.6 7.8E-05 36.8 7.9 29 140-169 87-115 (345)
69 TIGR02981 phageshock_pspE phag 86.2 1.5 3.3E-05 32.0 4.5 74 76-169 11-84 (101)
70 cd01534 4RHOD_Repeat_3 Member 85.4 2.5 5.5E-05 29.7 5.3 28 140-169 55-82 (95)
71 cd01443 Cdc25_Acr2p Cdc25 enzy 85.1 5.3 0.00012 29.1 7.1 21 140-160 65-85 (113)
72 PRK00162 glpE thiosulfate sulf 83.6 9.8 0.00021 27.4 7.8 39 127-169 46-84 (108)
73 PRK10287 thiosulfate:cyanide s 83.3 3.5 7.6E-05 30.3 5.3 42 126-169 45-86 (104)
74 TIGR02990 ectoine_eutA ectoine 82.5 9.1 0.0002 32.4 8.2 94 73-169 110-208 (239)
75 PRK09875 putative hydrolase; P 82.2 9.2 0.0002 33.4 8.4 38 73-110 38-78 (292)
76 cd01528 RHOD_2 Member of the R 81.1 5 0.00011 28.5 5.4 41 127-169 43-84 (101)
77 cd01531 Acr2p Eukaryotic arsen 80.1 10 0.00022 27.6 6.9 23 140-162 61-83 (113)
78 cd01530 Cdc25 Cdc25 phosphatas 79.7 2.3 5E-05 31.8 3.4 24 140-164 67-91 (121)
79 PF02126 PTE: Phosphotriestera 78.4 2.8 6.1E-05 36.9 3.9 99 74-173 43-186 (308)
80 cd01532 4RHOD_Repeat_1 Member 78.1 8.1 0.00018 27.1 5.7 30 140-169 49-78 (92)
81 PRK15378 inositol phosphate ph 78.0 2 4.2E-05 40.2 2.9 19 144-162 459-477 (564)
82 cd01449 TST_Repeat_2 Thiosulfa 75.7 5 0.00011 29.1 4.1 42 126-169 63-104 (118)
83 TIGR03167 tRNA_sel_U_synt tRNA 75.3 13 0.00028 32.8 7.2 27 142-169 75-101 (311)
84 PF02571 CbiJ: Precorrin-6x re 75.2 7.1 0.00015 33.3 5.4 81 66-146 48-135 (249)
85 COG3473 Maleate cis-trans isom 74.6 47 0.001 28.1 9.8 95 72-169 107-206 (238)
86 cd01444 GlpE_ST GlpE sulfurtra 72.9 11 0.00025 26.0 5.3 40 126-169 43-82 (96)
87 PRK11493 sseA 3-mercaptopyruva 71.6 53 0.0011 28.1 10.1 43 126-169 72-114 (281)
88 PLN02723 3-mercaptopyruvate su 71.4 9.1 0.0002 33.6 5.4 42 126-169 254-295 (320)
89 TIGR02571 ComEB ComE operon pr 70.9 14 0.00031 29.1 5.9 51 64-114 90-140 (151)
90 cd01529 4RHOD_Repeats Member o 70.5 6.8 0.00015 27.5 3.6 29 139-169 54-82 (96)
91 PRK11493 sseA 3-mercaptopyruva 69.1 11 0.00024 32.3 5.3 42 126-169 216-257 (281)
92 TIGR03865 PQQ_CXXCW PQQ-depend 68.8 18 0.00038 28.6 6.0 30 139-169 114-143 (162)
93 PF13292 DXP_synthase_N: 1-deo 68.7 7 0.00015 33.9 3.9 41 100-149 229-269 (270)
94 cd01526 RHOD_ThiF Member of th 68.6 10 0.00022 28.1 4.4 27 140-168 71-97 (122)
95 PF05925 IpgD: Enterobacterial 68.5 1.6 3.5E-05 41.1 0.0 23 140-162 452-474 (559)
96 PLN02225 1-deoxy-D-xylulose-5- 67.0 9.4 0.0002 37.5 4.8 47 100-154 320-367 (701)
97 cd01521 RHOD_PspE2 Member of t 66.5 10 0.00023 27.4 4.0 30 140-169 63-92 (110)
98 PRK08762 molybdopterin biosynt 66.4 29 0.00063 31.1 7.6 41 127-169 43-83 (376)
99 COG1154 Dxs Deoxyxylulose-5-ph 65.0 11 0.00023 36.4 4.6 45 100-153 237-281 (627)
100 cd01525 RHOD_Kc Member of the 64.8 10 0.00023 26.8 3.7 28 140-169 64-91 (105)
101 PLN02582 1-deoxy-D-xylulose-5- 64.4 14 0.00031 36.1 5.6 44 101-152 277-321 (677)
102 cd01447 Polysulfide_ST Polysul 63.1 10 0.00022 26.5 3.4 28 140-169 60-87 (103)
103 PRK08057 cobalt-precorrin-6x r 61.4 9.7 0.00021 32.5 3.4 79 66-146 47-132 (248)
104 cd01520 RHOD_YbbB Member of th 60.9 14 0.0003 27.7 3.9 30 139-169 84-113 (128)
105 COG2089 SpsE Sialic acid synth 58.5 80 0.0017 28.4 8.6 26 126-152 159-186 (347)
106 PRK09629 bifunctional thiosulf 58.5 22 0.00048 34.3 5.6 42 126-169 208-249 (610)
107 cd07944 DRE_TIM_HOA_like 4-hyd 57.5 45 0.00097 28.5 6.9 81 75-163 115-202 (266)
108 PRK07414 cob(I)yrinic acid a,c 57.0 16 0.00035 29.7 3.8 27 140-166 20-46 (178)
109 cd01524 RHOD_Pyr_redox Member 56.1 33 0.0007 23.6 4.9 38 127-168 39-76 (90)
110 cd03174 DRE_TIM_metallolyase D 55.8 35 0.00077 28.3 5.9 72 75-151 121-200 (265)
111 cd07037 TPP_PYR_MenD Pyrimidin 55.5 69 0.0015 25.3 7.2 38 75-112 4-41 (162)
112 PHA02588 cd deoxycytidylate de 53.0 42 0.00092 26.8 5.7 50 64-113 104-154 (168)
113 cd01445 TST_Repeats Thiosulfat 51.5 50 0.0011 25.2 5.7 44 126-169 80-124 (138)
114 TIGR00204 dxs 1-deoxy-D-xylulo 51.4 26 0.00055 33.9 4.8 44 102-154 234-277 (617)
115 PF03102 NeuB: NeuB family; I 50.9 46 0.001 28.3 5.8 73 76-152 63-152 (241)
116 COG2099 CobK Precorrin-6x redu 49.2 42 0.0009 29.0 5.2 130 65-200 48-199 (257)
117 PF00762 Ferrochelatase: Ferro 48.9 53 0.0011 29.0 6.1 45 73-117 245-300 (316)
118 COG2442 Uncharacterized conser 48.3 15 0.00034 25.8 2.1 32 148-180 25-56 (79)
119 TIGR00173 menD 2-succinyl-5-en 47.1 1.1E+02 0.0024 27.8 8.1 78 75-164 7-85 (432)
120 cd07943 DRE_TIM_HOA 4-hydroxy- 46.7 65 0.0014 27.2 6.2 73 75-152 118-196 (263)
121 KOG1529 Mercaptopyruvate sulfu 46.5 34 0.00073 30.0 4.3 38 126-163 221-258 (286)
122 TIGR03586 PseI pseudaminic aci 46.3 1.8E+02 0.0038 26.0 9.0 70 79-152 87-173 (327)
123 PRK01269 tRNA s(4)U8 sulfurtra 45.8 32 0.00069 32.1 4.4 41 125-169 435-475 (482)
124 smart00400 ZnF_CHCC zinc finge 45.6 23 0.00051 22.6 2.6 31 145-176 23-53 (55)
125 TIGR00715 precor6x_red precorr 45.6 24 0.00052 30.2 3.3 48 65-112 47-98 (256)
126 TIGR02764 spore_ybaN_pdaB poly 45.6 75 0.0016 25.2 6.1 69 76-151 88-162 (191)
127 cd07039 TPP_PYR_POX Pyrimidine 45.2 1.5E+02 0.0032 23.2 9.1 79 75-164 7-85 (164)
128 COG2897 SseA Rhodanese-related 44.6 56 0.0012 28.6 5.5 41 126-167 219-259 (285)
129 cd00158 RHOD Rhodanese Homolog 43.9 36 0.00079 22.6 3.5 27 139-167 48-74 (89)
130 TIGR03569 NeuB_NnaB N-acetylne 43.8 1.4E+02 0.0031 26.5 8.1 84 64-151 67-173 (329)
131 PF01807 zf-CHC2: CHC2 zinc fi 41.5 28 0.0006 25.1 2.7 37 145-182 54-90 (97)
132 PLN02234 1-deoxy-D-xylulose-5- 41.3 56 0.0012 31.9 5.4 48 99-154 276-324 (641)
133 KOG0025 Zn2+-binding dehydroge 41.2 1.1E+02 0.0024 27.3 6.7 107 42-164 134-254 (354)
134 PRK07411 hypothetical protein; 41.1 32 0.00069 31.2 3.5 28 140-169 341-368 (390)
135 PRK11858 aksA trans-homoaconit 40.5 2.8E+02 0.006 25.0 9.7 73 75-152 122-199 (378)
136 PF04255 DUF433: Protein of un 40.4 22 0.00047 23.1 1.8 30 150-180 15-44 (56)
137 PRK12331 oxaloacetate decarbox 40.3 1.5E+02 0.0033 27.5 7.9 71 75-150 129-206 (448)
138 PRK12315 1-deoxy-D-xylulose-5- 40.0 1E+02 0.0022 29.6 6.9 46 100-154 201-246 (581)
139 PF00682 HMGL-like: HMGL-like 39.6 1.7E+02 0.0037 24.0 7.5 72 75-151 114-191 (237)
140 cd07995 TPK Thiamine pyrophosp 39.5 96 0.0021 25.3 5.9 75 74-158 31-107 (208)
141 cd01535 4RHOD_Repeat_4 Member 38.9 96 0.0021 23.9 5.6 39 126-168 36-74 (145)
142 cd07938 DRE_TIM_HMGL 3-hydroxy 38.5 1.2E+02 0.0025 26.1 6.5 72 75-151 120-203 (274)
143 PF10302 DUF2407: DUF2407 ubiq 38.0 19 0.00041 26.3 1.3 11 141-151 85-95 (97)
144 PRK09389 (R)-citramalate synth 37.4 2.5E+02 0.0053 26.4 8.9 72 75-151 120-196 (488)
145 cd07212 Pat_PNPLA9 Patatin-lik 36.9 46 0.00099 29.2 3.8 49 132-182 17-67 (312)
146 TIGR02660 nifV_homocitr homoci 36.9 3.1E+02 0.0067 24.5 9.6 72 75-151 119-195 (365)
147 cd06831 PLPDE_III_ODC_like_AZI 36.5 1.4E+02 0.003 27.1 6.9 89 64-154 84-177 (394)
148 PRK08155 acetolactate synthase 36.3 2.1E+02 0.0046 26.9 8.5 78 75-164 20-98 (564)
149 cd05567 PTS_IIB_mannitol PTS_I 36.3 56 0.0012 22.7 3.5 22 143-164 2-23 (87)
150 PF02572 CobA_CobO_BtuR: ATP:c 36.0 44 0.00096 27.0 3.3 28 140-167 2-29 (172)
151 PF14555 UBA_4: UBA-like domai 35.6 57 0.0012 19.7 3.1 23 157-179 16-38 (43)
152 TIGR03217 4OH_2_O_val_ald 4-hy 35.1 2.6E+02 0.0056 24.8 8.3 74 74-152 119-199 (333)
153 COG1660 Predicted P-loop-conta 34.8 53 0.0012 28.7 3.7 21 144-164 246-266 (286)
154 PRK12581 oxaloacetate decarbox 34.8 1.3E+02 0.0029 28.2 6.6 82 75-164 138-226 (468)
155 TIGR00118 acolac_lg acetolacta 34.5 2E+02 0.0044 27.0 8.0 78 75-164 8-86 (558)
156 cd02952 TRP14_like Human TRX-r 34.5 26 0.00056 26.5 1.6 51 128-178 8-58 (119)
157 PRK14040 oxaloacetate decarbox 34.3 1.5E+02 0.0032 28.7 7.0 55 102-164 164-218 (593)
158 PRK07413 hypothetical protein; 34.2 53 0.0012 30.0 3.8 27 140-166 199-225 (382)
159 PF13607 Succ_CoA_lig: Succiny 34.0 45 0.00098 25.8 3.0 74 75-157 18-96 (138)
160 PF10727 Rossmann-like: Rossma 33.7 35 0.00075 26.1 2.2 27 126-152 78-107 (127)
161 PRK12571 1-deoxy-D-xylulose-5- 33.7 82 0.0018 30.6 5.3 47 100-154 240-286 (641)
162 PRK08195 4-hyroxy-2-oxovalerat 33.4 2.7E+02 0.0058 24.7 8.2 74 74-152 120-200 (337)
163 PRK07097 gluconate 5-dehydroge 33.3 1.6E+02 0.0035 24.1 6.5 71 75-152 27-98 (265)
164 cd07038 TPP_PYR_PDC_IPDC_like 33.3 2.3E+02 0.005 22.0 7.2 77 75-164 4-81 (162)
165 TIGR02090 LEU1_arch isopropylm 33.2 3.4E+02 0.0073 24.3 8.8 73 75-152 118-195 (363)
166 PRK06463 fabG 3-ketoacyl-(acyl 33.0 2.7E+02 0.0058 22.6 7.8 65 75-151 24-89 (255)
167 PRK08199 thiamine pyrophosphat 32.8 2.3E+02 0.0051 26.6 8.1 79 75-165 15-94 (557)
168 PRK08527 acetolactate synthase 32.6 2.6E+02 0.0057 26.3 8.4 39 75-113 10-48 (563)
169 COG0276 HemH Protoheme ferro-l 32.6 1.2E+02 0.0026 27.0 5.7 44 74-117 248-302 (320)
170 cd02007 TPP_DXS Thiamine pyrop 32.5 1.5E+02 0.0034 23.9 6.1 64 80-152 125-191 (195)
171 PRK08862 short chain dehydroge 32.5 1.5E+02 0.0033 24.1 6.1 69 76-151 23-93 (227)
172 PF03668 ATP_bind_2: P-loop AT 32.4 35 0.00077 29.9 2.3 20 143-162 244-263 (284)
173 PRK07710 acetolactate synthase 32.3 2.5E+02 0.0055 26.5 8.3 78 75-164 23-100 (571)
174 PRK07789 acetolactate synthase 32.3 3E+02 0.0066 26.2 8.9 78 75-164 38-116 (612)
175 PRK08063 enoyl-(acyl carrier p 31.7 1.8E+02 0.0039 23.4 6.4 70 75-151 21-92 (250)
176 PRK05867 short chain dehydroge 31.6 1.6E+02 0.0036 23.8 6.2 70 75-151 26-96 (253)
177 PF02880 PGM_PMM_III: Phosphog 31.5 2E+02 0.0044 20.8 6.8 83 82-178 20-110 (113)
178 PRK06965 acetolactate synthase 31.4 2.5E+02 0.0055 26.6 8.1 78 75-164 28-106 (587)
179 COG1099 Predicted metal-depend 31.2 1.4E+02 0.003 25.6 5.6 50 71-120 13-78 (254)
180 PF02775 TPP_enzyme_C: Thiamin 31.1 1.5E+02 0.0032 22.5 5.5 42 97-148 112-153 (153)
181 PRK13394 3-hydroxybutyrate deh 30.9 2.2E+02 0.0047 23.0 6.8 70 75-151 24-94 (262)
182 TIGR00853 pts-lac PTS system, 30.6 45 0.00097 24.0 2.3 28 141-169 3-33 (95)
183 PF01168 Ala_racemase_N: Alani 30.6 1.1E+02 0.0025 24.5 5.0 69 72-156 55-125 (218)
184 PRK06882 acetolactate synthase 30.5 2.1E+02 0.0046 27.0 7.4 37 75-112 11-48 (574)
185 PRK07878 molybdopterin biosynt 30.5 67 0.0015 29.0 3.9 28 140-169 342-369 (392)
186 PRK06182 short chain dehydroge 30.5 2.7E+02 0.0059 22.9 7.4 64 75-151 20-84 (273)
187 PLN02790 transketolase 30.3 88 0.0019 30.4 4.9 50 98-154 192-241 (654)
188 PRK10318 hypothetical protein; 30.0 59 0.0013 24.9 2.9 29 128-156 72-103 (121)
189 PRK08978 acetolactate synthase 29.9 3.9E+02 0.0084 25.0 9.0 79 75-165 8-86 (548)
190 PRK06036 translation initiatio 29.9 85 0.0018 28.1 4.4 25 140-164 147-174 (339)
191 PTZ00089 transketolase; Provis 29.7 1.1E+02 0.0023 29.9 5.3 49 97-152 202-250 (661)
192 COG5016 Pyruvate/oxaloacetate 29.7 92 0.002 28.9 4.5 40 127-169 185-226 (472)
193 PRK05416 glmZ(sRNA)-inactivati 29.7 76 0.0016 27.6 3.9 18 144-161 248-265 (288)
194 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.4 1.8E+02 0.0039 24.9 6.2 73 75-152 124-203 (275)
195 COG1448 TyrB Aspartate/tyrosin 29.1 2.1E+02 0.0046 26.3 6.7 76 76-156 112-191 (396)
196 TIGR03099 dCO2ase_PEP1 pyridox 28.4 2.8E+02 0.0061 24.7 7.5 88 64-153 97-197 (398)
197 PRK07064 hypothetical protein; 28.3 3E+02 0.0066 25.6 8.0 78 75-164 10-88 (544)
198 PF00308 Bac_DnaA: Bacterial d 28.3 1.3E+02 0.0029 24.7 5.0 37 128-164 18-57 (219)
199 PRK06947 glucose-1-dehydrogena 28.2 2.5E+02 0.0053 22.5 6.6 70 75-151 19-90 (248)
200 PLN02723 3-mercaptopyruvate su 28.2 1.4E+02 0.0031 26.1 5.5 43 126-169 88-130 (320)
201 PF04263 TPK_catalytic: Thiami 28.1 2.6E+02 0.0057 21.0 8.5 77 74-160 25-103 (123)
202 PF11385 DUF3189: Protein of u 28.1 54 0.0012 25.8 2.5 22 144-165 2-23 (148)
203 PF08659 KR: KR domain; Inter 27.9 2E+02 0.0042 22.6 5.8 69 75-151 17-91 (181)
204 PRK05986 cob(I)alamin adenolsy 27.8 76 0.0017 26.1 3.4 26 140-165 21-46 (191)
205 PF04851 ResIII: Type III rest 27.8 1.8E+02 0.004 21.8 5.5 38 127-164 10-48 (184)
206 TIGR01108 oadA oxaloacetate de 27.8 1.8E+02 0.004 28.0 6.5 82 75-164 124-212 (582)
207 COG3958 Transketolase, C-termi 27.7 3.3E+02 0.0071 24.2 7.4 106 64-180 197-311 (312)
208 PLN02470 acetolactate synthase 27.4 3.8E+02 0.0082 25.4 8.6 38 75-112 20-57 (585)
209 PRK08213 gluconate 5-dehydroge 27.3 2E+02 0.0044 23.3 6.0 70 75-151 29-99 (259)
210 cd06810 PLPDE_III_ODC_DapDC_li 26.7 2.7E+02 0.0058 24.3 7.0 88 64-152 73-173 (368)
211 PLN02591 tryptophan synthase 26.4 2.6E+02 0.0057 23.8 6.6 72 76-153 125-199 (250)
212 COG0381 WecB UDP-N-acetylgluco 26.3 1.8E+02 0.0039 26.6 5.8 81 76-160 24-108 (383)
213 cd07948 DRE_TIM_HCS Saccharomy 26.2 2.3E+02 0.0049 24.2 6.2 72 76-152 119-195 (262)
214 PRK12937 short chain dehydroge 26.1 2.7E+02 0.0058 22.2 6.5 70 75-151 22-93 (245)
215 cd07945 DRE_TIM_CMS Leptospira 26.1 2.8E+02 0.0062 23.8 6.9 72 75-151 121-201 (280)
216 PRK09107 acetolactate synthase 26.0 3E+02 0.0064 26.3 7.6 38 75-113 18-56 (595)
217 TIGR00109 hemH ferrochelatase. 25.9 2.1E+02 0.0046 25.1 6.2 44 74-117 251-305 (322)
218 TIGR03799 NOD_PanD_pyr putativ 25.9 1.9E+02 0.004 27.4 6.1 56 98-157 222-280 (522)
219 cd06840 PLPDE_III_Bif_AspK_Dap 25.8 2.3E+02 0.0051 25.1 6.5 87 64-153 85-182 (368)
220 PRK14042 pyruvate carboxylase 25.7 2.3E+02 0.005 27.4 6.8 82 75-164 129-217 (596)
221 PRK07814 short chain dehydroge 25.7 2.2E+02 0.0049 23.3 6.1 70 75-151 27-97 (263)
222 COG0111 SerA Phosphoglycerate 25.5 2.6E+02 0.0056 24.8 6.6 69 75-152 158-236 (324)
223 PRK07478 short chain dehydroge 25.5 2.4E+02 0.0052 22.8 6.1 70 75-151 23-93 (254)
224 cd00561 CobA_CobO_BtuR ATP:cor 25.3 93 0.002 24.7 3.4 24 142-165 3-26 (159)
225 PRK08322 acetolactate synthase 25.3 3.5E+02 0.0075 25.3 7.8 78 75-164 8-85 (547)
226 PRK08643 acetoin reductase; Va 25.3 3E+02 0.0064 22.2 6.7 70 75-151 19-89 (256)
227 PLN02150 terpene synthase/cycl 25.2 58 0.0013 23.6 2.1 40 155-194 6-45 (96)
228 COG1165 MenD 2-succinyl-6-hydr 24.8 3.7E+02 0.008 25.9 7.7 66 75-152 15-81 (566)
229 PRK09282 pyruvate carboxylase 24.6 2.6E+02 0.0056 27.0 6.9 82 75-164 129-217 (592)
230 PRK07523 gluconate 5-dehydroge 24.4 2.8E+02 0.006 22.4 6.4 71 75-152 27-98 (255)
231 PRK05993 short chain dehydroge 24.4 3.6E+02 0.0078 22.3 7.1 63 75-150 21-85 (277)
232 COG0787 Alr Alanine racemase [ 24.4 2.1E+02 0.0046 25.9 5.9 73 73-158 64-138 (360)
233 PLN02439 arginine decarboxylas 24.3 3.7E+02 0.008 25.8 7.8 90 64-153 85-193 (559)
234 PF00282 Pyridoxal_deC: Pyrido 24.3 95 0.0021 27.8 3.7 68 85-157 142-209 (373)
235 PRK07282 acetolactate synthase 24.1 4.6E+02 0.0099 24.8 8.4 38 75-113 17-55 (566)
236 PRK08617 acetolactate synthase 24.1 3.7E+02 0.0079 25.2 7.8 38 75-113 12-49 (552)
237 PRK00915 2-isopropylmalate syn 24.0 6.1E+02 0.013 23.9 9.6 73 75-152 126-207 (513)
238 cd07216 Pat17_PNPLA8_PNPLA9_li 24.0 67 0.0015 27.8 2.6 37 145-182 42-78 (309)
239 PLN02449 ferrochelatase 23.7 1.2E+02 0.0027 28.5 4.4 46 73-118 342-398 (485)
240 PRK06466 acetolactate synthase 23.6 3.2E+02 0.0069 25.8 7.3 38 75-112 11-48 (574)
241 PRK12939 short chain dehydroge 23.4 2.5E+02 0.0055 22.4 5.9 69 75-152 24-95 (250)
242 PRK06179 short chain dehydroge 23.4 3.6E+02 0.0077 22.0 6.8 62 75-151 21-83 (270)
243 COG1054 Predicted sulfurtransf 23.4 5.3E+02 0.011 22.9 8.5 84 65-168 110-197 (308)
244 PRK07666 fabG 3-ketoacyl-(acyl 23.2 3.1E+02 0.0068 21.8 6.4 71 75-152 24-95 (239)
245 PRK07413 hypothetical protein; 23.1 1.1E+02 0.0024 28.0 3.9 27 140-166 18-44 (382)
246 PRK05692 hydroxymethylglutaryl 22.8 3E+02 0.0064 23.8 6.4 73 75-152 126-210 (287)
247 cd07211 Pat_PNPLA8 Patatin-lik 22.8 98 0.0021 26.7 3.4 49 132-181 26-76 (308)
248 PRK07449 2-succinyl-5-enolpyru 22.6 4.1E+02 0.0088 25.0 7.7 39 75-113 16-54 (568)
249 PRK12935 acetoacetyl-CoA reduc 22.5 3.8E+02 0.0083 21.4 6.8 70 75-151 23-94 (247)
250 TIGR02415 23BDH acetoin reduct 22.4 3.4E+02 0.0074 21.7 6.5 70 75-151 17-87 (254)
251 PRK07524 hypothetical protein; 22.4 5.1E+02 0.011 24.1 8.3 78 75-164 9-86 (535)
252 PRK07979 acetolactate synthase 22.3 4.3E+02 0.0093 24.9 7.9 38 75-113 11-49 (574)
253 COG0794 GutQ Predicted sugar p 22.2 2.1E+02 0.0045 23.8 5.0 34 127-164 26-59 (202)
254 PRK12429 3-hydroxybutyrate deh 22.2 2.9E+02 0.0062 22.1 6.0 70 75-151 21-91 (258)
255 cd06808 PLPDE_III Type III Pyr 22.2 3.9E+02 0.0084 20.9 7.0 87 64-151 63-152 (211)
256 PRK08628 short chain dehydroge 22.0 4.2E+02 0.0092 21.3 7.5 69 75-151 24-93 (258)
257 PRK08936 glucose-1-dehydrogena 22.0 4.2E+02 0.0091 21.5 7.0 70 75-151 24-95 (261)
258 TIGR01839 PHA_synth_II poly(R) 21.9 4.9E+02 0.011 25.1 8.0 66 84-152 228-300 (560)
259 PF13579 Glyco_trans_4_4: Glyc 21.9 83 0.0018 22.7 2.4 81 75-163 11-92 (160)
260 PRK06048 acetolactate synthase 21.8 6.6E+02 0.014 23.6 9.0 78 75-164 15-92 (561)
261 PRK05866 short chain dehydroge 21.6 2.8E+02 0.006 23.5 5.9 71 75-152 57-128 (293)
262 cd02008 TPP_IOR_alpha Thiamine 21.5 2.7E+02 0.0058 21.8 5.5 44 97-149 132-175 (178)
263 PRK06139 short chain dehydroge 21.4 2.7E+02 0.0058 24.3 5.9 69 75-150 24-93 (330)
264 PRK05693 short chain dehydroge 21.2 4.6E+02 0.01 21.4 7.9 63 75-150 18-81 (274)
265 TIGR01378 thi_PPkinase thiamin 21.2 3.2E+02 0.0069 22.2 6.0 74 74-156 27-101 (203)
266 PLN02537 diaminopimelate decar 21.2 4.8E+02 0.01 23.4 7.6 88 64-153 91-194 (410)
267 PRK14071 6-phosphofructokinase 21.2 6.1E+02 0.013 22.8 10.3 105 75-180 100-223 (360)
268 PRK06483 dihydromonapterin red 21.1 4.3E+02 0.0093 21.0 7.8 65 75-151 19-84 (236)
269 TIGR01273 speA arginine decarb 21.1 4.9E+02 0.011 25.4 8.0 90 64-153 142-249 (624)
270 cd06843 PLPDE_III_PvsE_like Ty 21.1 4.2E+02 0.0092 23.4 7.2 88 64-152 73-175 (377)
271 KOG1185 Thiamine pyrophosphate 21.0 4E+02 0.0087 25.5 7.1 35 76-111 22-56 (571)
272 PRK08340 glucose-1-dehydrogena 21.0 2.7E+02 0.0058 22.7 5.6 68 75-151 17-86 (259)
273 TIGR02418 acolac_catab acetola 21.0 5.2E+02 0.011 24.1 8.1 38 75-113 6-43 (539)
274 cd06389 PBP1_iGluR_AMPA_GluR2 20.9 3.5E+02 0.0076 23.8 6.7 76 73-151 108-187 (370)
275 PRK06113 7-alpha-hydroxysteroi 20.9 3.7E+02 0.0081 21.7 6.4 71 75-152 28-99 (255)
276 PRK06457 pyruvate dehydrogenas 20.8 5.2E+02 0.011 24.2 8.1 78 75-164 9-86 (549)
277 TIGR02717 AcCoA-syn-alpha acet 20.6 4.7E+02 0.01 24.0 7.6 65 80-153 174-241 (447)
278 CHL00200 trpA tryptophan synth 20.5 4.1E+02 0.009 22.7 6.7 72 76-153 138-212 (263)
279 PF11871 DUF3391: Domain of un 20.5 1.4E+02 0.0031 21.8 3.5 27 64-90 29-56 (128)
280 PRK06371 translation initiatio 20.5 1.7E+02 0.0037 26.1 4.5 25 140-164 136-163 (329)
281 PRK08159 enoyl-(acyl carrier p 20.3 3.2E+02 0.0069 22.8 6.0 69 75-151 29-98 (272)
282 PRK08979 acetolactate synthase 20.3 4.1E+02 0.009 25.1 7.3 38 75-113 11-49 (572)
283 TIGR02613 mob_myst_B mobile my 20.1 1.1E+02 0.0024 24.6 3.0 26 144-169 120-147 (186)
284 PRK01045 ispH 4-hydroxy-3-meth 20.0 5.3E+02 0.011 22.7 7.4 79 64-152 33-124 (298)
No 1
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=100.00 E-value=6.2e-43 Score=280.39 Aligned_cols=151 Identities=52% Similarity=0.911 Sum_probs=110.6
Q ss_pred eeCCCCccccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHH
Q 028983 51 LIPPLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (201)
Q Consensus 51 ~~pp~nf~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (201)
++||.||+.|.++||||++|.+.++++|+++|+||||+|++++++.....+++++||+++|+++.....|.+.++.+.+.
T Consensus 1 lvpP~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~ 80 (164)
T PF03162_consen 1 LVPPLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVA 80 (164)
T ss_dssp B---TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHH
T ss_pred CcCCccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHH
Confidence 68999999999999999999999999999999999999999977777778999999999999999887766677889999
Q ss_pred HHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCCchhhhhHhhhcccCC
Q 028983 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRGTRILSPALE 201 (201)
Q Consensus 131 ~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f~~~~~ 201 (201)
++++.++++.++||||||.+|++|||+|+||||++|||+.++|++||++|++++.+..+++|||.|+.++.
T Consensus 81 ~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~~~~ 151 (164)
T PF03162_consen 81 EALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDVELV 151 (164)
T ss_dssp HHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT------
T ss_pred HHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCccee
Confidence 99999999899999999999999999999999999999999999999999999889999999999999873
No 2
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=100.00 E-value=8.1e-36 Score=247.45 Aligned_cols=158 Identities=68% Similarity=1.153 Sum_probs=150.0
Q ss_pred CCCCCCeeeeCCCCccccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCC----
Q 028983 43 VVTGDEVTLIPPLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHK---- 118 (201)
Q Consensus 43 ~~~~~~~~~~pp~nf~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~---- 118 (201)
.+.+.++.++||+||++|.++|||||+|.+.++.||+.+++|+||+|+++++++....|+++++|+++|+.|.+.+
T Consensus 46 ~~~~~~~~lipPlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k 125 (249)
T KOG1572|consen 46 NSTTGEMVLIPPLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKK 125 (249)
T ss_pred ccCCCCceecCCccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEeccccccccc
Confidence 4667788899999999999999999999999999999999999999999998887778999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCCchhhhhHhhhcc
Q 028983 119 EPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRGTRILSP 198 (201)
Q Consensus 119 ~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f~~ 198 (201)
.|++.+..+.|.++++.+++..|+|+|+||..|++|||++++|++++++|+...+++||+++++++.|..+++|++.||.
T Consensus 126 ~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~sk~r~~d~~Fie~fd~ 205 (249)
T KOG1572|consen 126 EPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAGSKGRRVDLRFIEMFDT 205 (249)
T ss_pred CCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhccchhHHHHHHHHHHhcc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 028983 199 AL 200 (201)
Q Consensus 199 ~~ 200 (201)
+.
T Consensus 206 ~~ 207 (249)
T KOG1572|consen 206 NP 207 (249)
T ss_pred cc
Confidence 63
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.90 E-value=6.3e-23 Score=158.37 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=99.8
Q ss_pred cccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHH
Q 028983 58 SMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL 137 (201)
Q Consensus 58 ~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~ 137 (201)
..|.++||+|++|...++++|+++||++||||+.+.... ...|++|+++|+.|...+ .+ .+.+.++++++.
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~--~~-~~~~~~~~~~i~ 72 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNL------NKKGFTYLGVPILDNTET--KI-SPYFPEAVEFIE 72 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCC------CCCCCEEEEEECCCCCCC--Ch-HHHHHHHHHHHH
Confidence 367899999999999999999999999999999874321 246899999999984322 11 345555555554
Q ss_pred c--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 138 D--VRNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 138 ~--~~~~pVLVHC~aG~~RTG~vva~~l~~-~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
. ..++||||||.+|.+|||+++++|++. .||+.++|++.++.. ++.+. .+..|+..
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~-R~~~~-p~~~~~~q 131 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDR-RPIIS-PNFGFLRQ 131 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHH-CCccC-CCHhHHHH
Confidence 3 468999999999999999999999885 799999999977755 66564 46777654
No 4
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.89 E-value=3.3e-22 Score=155.45 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=96.1
Q ss_pred ccccccceEecCCCChhhHHHHHhcCCcEEEEcCCC-CCCC-----chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHH
Q 028983 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPE-PYPE-----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (201)
Q Consensus 57 f~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e-~~~~-----~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (201)
+..|.+.+|+|++|++.+++.|+++||++|||||++ +... .+..++...|++|+|+|+.... ++.+.+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-----~~~~~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-----ITPDDVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-----CCHHHHH
Confidence 457889999999999999999999999999999986 2211 1234566789999999998642 3467777
Q ss_pred HHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 028983 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (201)
Q Consensus 131 ~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~ 180 (201)
.+.+.+. ..++|||+||++|+ |||+++++++...|++.++|+++.+..
T Consensus 77 ~f~~~~~-~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 77 TFRAAIG-AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAA 124 (135)
T ss_pred HHHHHHH-hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 6666654 46899999999999 999999999999999999999977644
No 5
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.89 E-value=6.1e-23 Score=163.84 Aligned_cols=121 Identities=26% Similarity=0.386 Sum_probs=78.3
Q ss_pred cccccc-eEecCCCC---hhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCC-------------
Q 028983 58 SMVDNG-IFRSGFPD---SANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEP------------- 120 (201)
Q Consensus 58 ~~V~~~-Lyrsg~p~---~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p------------- 120 (201)
..|.+| ||||+.+. +++++.|.++||++|||||.+....... -....|++++++|+.+....
T Consensus 14 ~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p-~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 92 (164)
T PF13350_consen 14 RRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAP-DPLIDGVQYVHIPIFGDDASSPDKLAELLQSSA 92 (164)
T ss_dssp -TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HH
T ss_pred eeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCC-CCCcCCceeeeeccccccccccccccccccccc
Confidence 467777 99999987 6789999999999999999862100000 01124999999999875332
Q ss_pred ------------CCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 028983 121 ------------FVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (201)
Q Consensus 121 ------------~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~ 180 (201)
.+....+.+.++++.|.+.. +|+||||++||||||+++|++|...|++.++|++||.+.
T Consensus 93 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY~lS 163 (164)
T PF13350_consen 93 DAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADYLLS 163 (164)
T ss_dssp HHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHHHGG
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 01122577899999998755 799999999999999999999999999999999999975
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.88 E-value=3e-22 Score=153.87 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=101.4
Q ss_pred ccccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHH
Q 028983 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVL 136 (201)
Q Consensus 57 f~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l 136 (201)
..+|.++||.|++|...+.++|+++||++||||+.+... ......|++|+|+|+.|...+. + ...+..+++++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~--~-~~~~~~~~~~i 74 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQD--I-SKYFDEAVDFI 74 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCC--h-HHHHHHHHHHH
Confidence 457889999999999999999999999999999987542 2233579999999999876442 1 34444455554
Q ss_pred Hc--cCCCcEEEEcCCCCChHHHHHHHHHH-HCCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 137 LD--VRNHPVLIHCKRGKHRTGCLVGCLRK-LQKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 137 ~~--~~~~pVLVHC~aG~~RTG~vva~~l~-~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
.. ..++||||||.+|.+|||+++++|++ ..+|+.++|++.++.. ++... .++.|.++
T Consensus 75 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~-r~~~~-~~~~~~~~ 134 (139)
T cd00127 75 DDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSR-RPIIS-PNAGFMRQ 134 (139)
T ss_pred HHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCccC-CCHHHHHH
Confidence 33 35789999999999999999988887 5799999999987765 65554 46666654
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.85 E-value=3.2e-20 Score=149.10 Aligned_cols=136 Identities=16% Similarity=0.213 Sum_probs=106.8
Q ss_pred CccccccceEecCCCCh----hhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHH
Q 028983 56 NFSMVDNGIFRSGFPDS----ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIRE 131 (201)
Q Consensus 56 nf~~V~~~Lyrsg~p~~----~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~ 131 (201)
...+|...+.....|.. .+++.|+++||++||+++.+.++ .+.++..|+.|+++|+.|...|. .+.+.+
T Consensus 10 ~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~---~~~~~~~gi~~~~~p~~D~~~P~----~~~i~~ 82 (166)
T PTZ00242 10 QIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYD---AELLEKNGIEVHDWPFDDGAPPP----KAVIDN 82 (166)
T ss_pred ceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCC---HHHHHHCCCEEEecCCCCCCCCC----HHHHHH
Confidence 46677888888888886 45688999999999999876442 34667789999999999987774 555655
Q ss_pred HHHHHHc------cCCCcEEEEcCCCCChHHHHHHHHHHHC-CCCHHHHHHHHHHHhcCCCCchhhhhHhhhcc
Q 028983 132 ALKVLLD------VRNHPVLIHCKRGKHRTGCLVGCLRKLQ-KWCLSSVFDEYQRFAAAKARVSDQRGTRILSP 198 (201)
Q Consensus 132 ~l~~l~~------~~~~pVLVHC~aG~~RTG~vva~~l~~~-g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f~~ 198 (201)
+++.+.+ ..+++|+|||.+|.||||+++++||+.. +|+.++|++.++...+......|.+|+..|.-
T Consensus 83 ~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 83 WLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKKYKP 156 (166)
T ss_pred HHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 6655532 2489999999999999999999999965 59999999988877433334468889988864
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.83 E-value=2.6e-19 Score=150.49 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=103.9
Q ss_pred eEecCCCCh----hhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc-
Q 028983 64 IFRSGFPDS----ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD- 138 (201)
Q Consensus 64 Lyrsg~p~~----~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~- 138 (201)
+..-..|+. ..++.|+++||++||+++...|+ .+.++..||+|+++|+.|...|. .+.+.++++++..
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd---~~~~~~~GI~~~~lpipDg~aPs----~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYN---DGEITSAGINVHELIFPDGDAPT----VDIVSNWLTIVNNV 166 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC---HHHHHHcCCeEEEeecCCCCCCC----HHHHHHHHHHHHHH
Confidence 556677775 45688999999999999987653 34567889999999999998885 5677777777643
Q ss_pred -cCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCC-CchhhhhHhhhcc
Q 028983 139 -VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKA-RVSDQRGTRILSP 198 (201)
Q Consensus 139 -~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~~~~-~~~~~~Fie~f~~ 198 (201)
..+++|+|||.+|.||||+++|+||+..|++.++|++.++.. ++.+ ...|.+|++.|.-
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~-RPgAIn~~Q~~fL~~y~~ 227 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDR-RKGAINKRQLQFLKAYKK 227 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999988766 5544 4579999998863
No 9
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.82 E-value=1.3e-19 Score=138.62 Aligned_cols=122 Identities=20% Similarity=0.398 Sum_probs=93.8
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCC-CCCCCCCCHHHHHHHHHHHHc--cC
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGH-KEPFVNIPEDMIREALKVLLD--VR 140 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~-~~p~~~i~~~~i~~~l~~l~~--~~ 140 (201)
||.|+.+... ..+|+++||++|||++.+.... ...+..++.|+++|+.|. ..+. .+.+.++.++|.+ ..
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~----~~~~~~~~~~i~~~~~~ 72 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPI----LEHLDQAVEFIENAISE 72 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHG----GGGHHHHHHHHHHHHHT
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcch----HHHHHHHHHhhhhhhcc
Confidence 6999999988 9999999999999999874322 345567999999999983 3322 2344444444433 46
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 141 NHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 141 ~~pVLVHC~aG~~RTG~vva~~l~~-~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
+++|||||.+|.+|||+++++||+. .||+.++|++.++.. ++... .+..|++.
T Consensus 73 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~-rp~~~-~~~~~~~~ 126 (133)
T PF00782_consen 73 GGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSR-RPQIN-PNPSFIRQ 126 (133)
T ss_dssp TSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHH-STTST-HHHHHHHH
T ss_pred cceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHH-CCCCC-CCHHHHHH
Confidence 8999999999999999999999995 699999999977655 66564 45555543
No 10
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.81 E-value=1e-19 Score=137.06 Aligned_cols=101 Identities=21% Similarity=0.422 Sum_probs=71.6
Q ss_pred ccccccceEecCCCChhhHHHHHhcCCcEEEEcCCC-CCC-----CchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHH
Q 028983 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPE-PYP-----EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (201)
Q Consensus 57 f~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e-~~~-----~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (201)
|..|++.+|.|++|++.+++.|++.|+|||||||++ +.+ ..+.+.++..|++|+|+|+... .++.+.+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-----~~~~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-----AITEEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-----T--HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-----CCCHHHHH
Confidence 678899999999999999999999999999999987 211 2356788999999999999975 23478888
Q ss_pred HHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 131 ~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
.+.+.+.. .++|||+||++|. |++.++++...
T Consensus 77 ~f~~~l~~-~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 77 AFADALES-LPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp HHHHHHHT-TTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCEEEECCCCh-hHHHHHHHHhh
Confidence 77777654 6899999999997 99998887653
No 11
>PRK12361 hypothetical protein; Provisional
Probab=99.78 E-value=2.3e-18 Score=160.74 Aligned_cols=134 Identities=16% Similarity=0.244 Sum_probs=106.1
Q ss_pred CccccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHH
Q 028983 56 NFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKV 135 (201)
Q Consensus 56 nf~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~ 135 (201)
.+..|.|+||.|+.|.+.+++.|+++||++||||+.+... . .......+++|+++|+.|...|. .+++.+++++
T Consensus 94 ~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~-~-~~~~~~~~i~yl~iPi~D~~~p~----~~~l~~a~~~ 167 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDG-L-DWSLTEEDIDYLNIPILDHSVPT----LAQLNQAINW 167 (547)
T ss_pred cceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccc-c-cccccccCceEEEeecCCCCCCc----HHHHHHHHHH
Confidence 4788999999999999999999999999999999976211 1 01112358999999999987764 5778888888
Q ss_pred HHc--cCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHHHHHhcCCCCc--hhhhhHhhh
Q 028983 136 LLD--VRNHPVLIHCKRGKHRTGCLVGCLRKL--QKWCLSSVFDEYQRFAAAKARV--SDQRGTRIL 196 (201)
Q Consensus 136 l~~--~~~~pVLVHC~aG~~RTG~vva~~l~~--~g~s~~~ai~ey~~~~~~~~~~--~~~~Fie~f 196 (201)
|.+ ..+++|||||++|.+||++++++||+. .+|+.++|++..+.. |+.++. .+.+.++.|
T Consensus 168 i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~-Rp~v~~n~~q~~~l~~~ 233 (547)
T PRK12361 168 IHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQI-RKTARLNKRQLRALEKM 233 (547)
T ss_pred HHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHHH
Confidence 765 357999999999999999999999995 389999999977755 665643 445555444
No 12
>PLN02727 NAD kinase
Probab=99.76 E-value=3e-18 Score=164.72 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=87.9
Q ss_pred ceEecCCCChhhHHHHHhcCCcEEEEcCCCCC-----CCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHH
Q 028983 63 GIFRSGFPDSANFSFLQTLRLRSIIYLCPEPY-----PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL 137 (201)
Q Consensus 63 ~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~-----~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~ 137 (201)
.+|||+||++++++.|.+.|||||||||++.. ...+.+.+++.|++|+|+|+.+...|. .++|.++.+.+.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt----~EqVe~fa~~l~ 337 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPS----AEQVEKFASLVS 337 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCC----HHHHHHHHHHHH
Confidence 48999999999999999999999999999732 123667788899999999998866664 789998888885
Q ss_pred ccCCCcEEEEcCCCCChHHHHHHHHHHHC-CC
Q 028983 138 DVRNHPVLIHCKRGKHRTGCLVGCLRKLQ-KW 168 (201)
Q Consensus 138 ~~~~~pVLVHC~aG~~RTG~vva~~l~~~-g~ 168 (201)
+..++|||+||++|.+|||+|+|||+.+. +.
T Consensus 338 ~slpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 338 DSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred hhcCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 66799999999999999999999999953 44
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.74 E-value=2.5e-17 Score=135.11 Aligned_cols=132 Identities=16% Similarity=0.292 Sum_probs=102.6
Q ss_pred CCeeeeCCCCccccccc-eEecCCCC------------h---hhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEE
Q 028983 47 DEVTLIPPLNFSMVDNG-IFRSGFPD------------S---ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLF 110 (201)
Q Consensus 47 ~~~~~~pp~nf~~V~~~-Lyrsg~p~------------~---~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~ 110 (201)
++..-+++.+|.||.|+ +.+=..|. . .-+.++++..+++|+-|...-|+ ++.+...||.++
T Consensus 43 e~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~yd---~~~f~~~Gi~h~ 119 (225)
T KOG1720|consen 43 EHYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRLYD---AKRFTDAGIDHH 119 (225)
T ss_pred eeeeccCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCCCC---hHHhcccCceee
Confidence 44556778889999888 22222221 1 12477888999999999987654 455677899999
Q ss_pred EeeeCCCCCCCCCCCHHHHHHHHHHHHc-cCCCcEEEEcCCCCChHHHHHHHHHHHC-CCCHHHHHHHHHHHhcCCCC
Q 028983 111 QFAIEGHKEPFVNIPEDMIREALKVLLD-VRNHPVLIHCKRGKHRTGCLVGCLRKLQ-KWCLSSVFDEYQRFAAAKAR 186 (201)
Q Consensus 111 ~ipi~d~~~p~~~i~~~~i~~~l~~l~~-~~~~pVLVHC~aG~~RTG~vva~~l~~~-g~s~~~ai~ey~~~~~~~~~ 186 (201)
++|+.|...|. .+.+.++++++.+ .+.+.|.|||++|.||||+++|||||+. |++..++++..+.. ||++.
T Consensus 120 ~l~f~Dg~tP~----~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~-RpG~V 192 (225)
T KOG1720|consen 120 DLFFADGSTPT----DAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRIC-RPGAV 192 (225)
T ss_pred eeecCCCCCCC----HHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhc-CCccc
Confidence 99999998885 6788888888754 2379999999999999999999999975 99999999976655 67663
No 14
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=1.2e-16 Score=120.54 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=95.3
Q ss_pred CccccccceEecCCCChhhHHHHHhcCCcEEEEcCCC--CC----CCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHH
Q 028983 56 NFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPE--PY----PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMI 129 (201)
Q Consensus 56 nf~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e--~~----~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i 129 (201)
.+..|.+.|+.|+|++.+++..++.+|+|+|||.|++ +. ...+..+++..|+.|.|+|+... .++.+.|
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~-----~iT~~dV 76 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG-----GITEADV 76 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC-----CCCHHHH
Confidence 4678899999999999999999999999999999997 11 12467788899999999999885 4568888
Q ss_pred HHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHH
Q 028983 130 REALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFD 175 (201)
Q Consensus 130 ~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ 175 (201)
+.+.+.+ +..++|||.||++|. |+-.+.++-....|++.+++.+
T Consensus 77 ~~f~~Al-~eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 77 EAFQRAL-DEAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HHHHHHH-HHhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 8665555 458999999999996 9988888877677999999876
No 15
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.68 E-value=7.7e-17 Score=137.23 Aligned_cols=127 Identities=29% Similarity=0.312 Sum_probs=92.0
Q ss_pred CCccccccc-eEecCCCChhhHH--HHHhcCCcEEEEcCCC-CCC-----CchHHHHhhCCcEEEEeeeCCCCCCCCCCC
Q 028983 55 LNFSMVDNG-IFRSGFPDSANFS--FLQTLRLRSIIYLCPE-PYP-----EANTEFLKSNGIKLFQFAIEGHKEPFVNIP 125 (201)
Q Consensus 55 ~nf~~V~~~-Lyrsg~p~~~~l~--~L~~lGIktII~Lr~e-~~~-----~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~ 125 (201)
.++..|.+. +|||++|.+.+.. +...++++++|+|+.+ ... +....+....++.....+... .....
T Consensus 45 ~~~~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 120 (249)
T COG2365 45 LNFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFP----TREDA 120 (249)
T ss_pred cccccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCc----cchhh
Confidence 445555555 9999999987665 8889999999999972 111 111111222233333323222 22334
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKA 185 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~~~~ 185 (201)
.+.+.+++..+++..++|||+||++|++|||+++|||++..||+.+++++||+.+.++..
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~ 180 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGE 180 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccc
Confidence 688888999888766799999999999999999999999999999999999999977544
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.67 E-value=4.5e-16 Score=124.34 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=63.7
Q ss_pred hhhHHHHHhcCCcEEEEcCCC-C---CC-CchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc--cCCCcE
Q 028983 72 SANFSFLQTLRLRSIIYLCPE-P---YP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPV 144 (201)
Q Consensus 72 ~~~l~~L~~lGIktII~Lr~e-~---~~-~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~--~~~~pV 144 (201)
..|++.|+++|++.||.|... + +. ..+.+.+++.||.|+|+||.|...|. .+.+.+++..|.. .++..|
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd----~~~~~~i~~eL~~~L~~g~~V 136 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPD----FAAAWQILEELAARLENGRKV 136 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS-------HHHHHHHHHHHHHHHHTT--E
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCC----HHHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999985 1 21 25667888999999999999999884 3334444444433 368999
Q ss_pred EEEcCCCCChHHHHHHHHHHHC--CCCHHHHH
Q 028983 145 LIHCKRGKHRTGCLVGCLRKLQ--KWCLSSVF 174 (201)
Q Consensus 145 LVHC~aG~~RTG~vva~~l~~~--g~s~~~ai 174 (201)
+|||.+|.||||+++||+|... +++.++||
T Consensus 137 ~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 137 LVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp EEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 9999999999999999999965 47777775
No 17
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.66 E-value=1.1e-15 Score=121.73 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=101.4
Q ss_pred CCccccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHH
Q 028983 55 LNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALK 134 (201)
Q Consensus 55 ~nf~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~ 134 (201)
..++.|+++||.|..-.+.+-.+|++.||+.|||...|.+.... .+++|.++|+.|.....+....+.+.+.++
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l------~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~ 88 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSL------PDIQYMKVPLEDTPQARLYDHFDPVADKIH 88 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccC------CCceeEEEEcccCCcchhhhhhhHHHHHHH
Confidence 46889999999996667778888999999999999998443222 489999999999754322222344555555
Q ss_pred HHHccCCCcEEEEcCCCCChHHHHHHHHHH-HCCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 135 VLLDVRNHPVLIHCKRGKHRTGCLVGCLRK-LQKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 135 ~l~~~~~~pVLVHC~aG~~RTG~vva~~l~-~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
.+. .++|.+||||.+|.+||..++.+||+ ++++++-+|.. +.+..+|..|+ |.+|-++
T Consensus 89 ~v~-~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~-~vKa~RpiIRP-N~GFw~Q 147 (198)
T KOG1718|consen 89 SVI-MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYH-WVKARRPIIRP-NVGFWRQ 147 (198)
T ss_pred HHH-hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHH-HHHhhCceeCC-CccHHHH
Confidence 543 47999999999999999998888887 67999999987 56566776664 7777654
No 18
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.62 E-value=4.5e-15 Score=128.59 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=105.5
Q ss_pred CCCccccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHH
Q 028983 54 PLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREAL 133 (201)
Q Consensus 54 p~nf~~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l 133 (201)
..+...|.++||.|+...+.+.+.|+++||++|+|+........ +....+++|.++|+.|.... ++ ...+.+++
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~--~i-~~~~~~~~ 145 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPST--DI-LQHFPEAI 145 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccc--cH-HHHHHHHH
Confidence 36788899999999999999999999999999999998732211 22334899999999996544 33 23455555
Q ss_pred HHHHc--cCCCcEEEEcCCCCChHHHHHHHHHH-HCCCCHHHHHHHHHHHhcCCCCchhhhhHhhh
Q 028983 134 KVLLD--VRNHPVLIHCKRGKHRTGCLVGCLRK-LQKWCLSSVFDEYQRFAAAKARVSDQRGTRIL 196 (201)
Q Consensus 134 ~~l~~--~~~~pVLVHC~aG~~RTG~vva~~l~-~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f 196 (201)
++|.. ..++.|||||.+|.+||.+++.+|+| ..||++++|++-++.. |+.+.+ |.+|+.+.
T Consensus 146 ~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~-R~~i~P-N~gf~~QL 209 (285)
T KOG1716|consen 146 SFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSR-RPIISP-NFGFLRQL 209 (285)
T ss_pred HHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHh-CCccCC-CHHHHHHH
Confidence 55543 46899999999999999998888888 5799999999977755 665644 88887654
No 19
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.57 E-value=2.5e-14 Score=112.66 Aligned_cols=116 Identities=16% Similarity=0.381 Sum_probs=89.7
Q ss_pred eEecCCCC-hhhHHHHHhcCCcEEEEcCCC-CCCCchHHHHhhCCcEEEEeeeCCC-CCCCCCCCHHHHHHHHHHHHc--
Q 028983 64 IFRSGFPD-SANFSFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGH-KEPFVNIPEDMIREALKVLLD-- 138 (201)
Q Consensus 64 Lyrsg~p~-~~~l~~L~~lGIktII~Lr~e-~~~~~~~~~~~~~gi~~~~ipi~d~-~~p~~~i~~~~i~~~l~~l~~-- 138 (201)
+..|..|- ..+.+.++++|+..||.+..+ ++. .....-++.||+++.+|..|. ..|. .+.|.+++++|..
T Consensus 32 v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~-a~s~~wk~~giE~L~i~T~D~~~~Ps----~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 32 VILGAMPFRSMDVPLIKKENVGGVVTLNEPYELL-APSNLWKNYGIEFLVIPTRDYTGAPS----LENIQKAVEFIHKNA 106 (183)
T ss_pred EEEeecccccccchHHHhcCCCeEEEeCCchhhh-hhhHHHHhccceeEEeccccccCCCC----HHHHHHHHHHHHhcc
Confidence 33344443 247789999999999999987 322 222345678999999999885 4553 7889999999875
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHHhcCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKA 185 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~-~g~s~~~ai~ey~~~~~~~~ 185 (201)
..++.|||||++|.+||.++++|||+. .+|+.++|++-.+.. |+..
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i-Rp~V 153 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKI-RPRV 153 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhc-Ccce
Confidence 357889999999999999999999996 599999999855544 6644
No 20
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.55 E-value=2.4e-14 Score=121.48 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=98.1
Q ss_pred ccccceEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhh-CCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHH
Q 028983 59 MVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL 137 (201)
Q Consensus 59 ~V~~~Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~-~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~ 137 (201)
.|.|.||.|+.-+..+++.|+++||++|||+++..+ ..++. ..+.|..||+.|+-.. .+ ...+-+++.+|.
T Consensus 174 ~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlp-----n~fe~~g~f~YkqipisDh~Sq--nl-s~ffpEAIsfId 245 (343)
T KOG1717|consen 174 EILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLP-----NNFENNGEFIYKQIPISDHASQ--NL-SQFFPEAISFID 245 (343)
T ss_pred hhccchhcccccccccHHHHHhcCceEEEecCCCCc-----chhhcCCceeEEeeeccchhhh--hh-hhhhHHHHHHHH
Confidence 578999999999999999999999999999998632 23333 4589999999997432 12 245667777776
Q ss_pred c--cCCCcEEEEcCCCCChHHHHHHHHHH-HCCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 138 D--VRNHPVLIHCKRGKHRTGCLVGCLRK-LQKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 138 ~--~~~~pVLVHC~aG~~RTG~vva~~l~-~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
+ .++-.|||||-+|.+|+.+++.+||| ....+..+|++=+++... ++. .|=.|+-+
T Consensus 246 eArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kks-nis-PNFnFMgQ 304 (343)
T KOG1717|consen 246 EARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKS-NIS-PNFNFMGQ 304 (343)
T ss_pred HhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhcc-CCC-CCcchhHH
Confidence 5 35788999999999999999999999 569999999987766533 332 45566543
No 21
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.36 E-value=4.3e-12 Score=103.07 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=60.4
Q ss_pred HhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc--cCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHH
Q 028983 102 LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPVLIHCKRGKHRTGCLVGCLRKL--QKWCLSSVFDEY 177 (201)
Q Consensus 102 ~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~--~~~~pVLVHC~aG~~RTG~vva~~l~~--~g~s~~~ai~ey 177 (201)
.+..|+.++++|+.|...|. ...+.+++.+|.+ ..++.|+|||.+|.||||+++|+|+++ .++..+++++.+
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~----~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPD----LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred eccCCceeeeeeecCCCCCc----HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 44579999999999998885 3666777777654 356799999999999999999988884 478888888866
Q ss_pred HHH
Q 028983 178 QRF 180 (201)
Q Consensus 178 ~~~ 180 (201)
++.
T Consensus 144 ~~~ 146 (180)
T COG2453 144 RRR 146 (180)
T ss_pred Hhc
Confidence 655
No 22
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.27 E-value=1e-10 Score=90.46 Aligned_cols=127 Identities=14% Similarity=0.212 Sum_probs=98.8
Q ss_pred EecCCCChh----hHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc--
Q 028983 65 FRSGFPDSA----NFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD-- 138 (201)
Q Consensus 65 yrsg~p~~~----~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~-- 138 (201)
.....|+.+ -++.|+++|++|||-++...|+. ..+++.||.....|++|...|. ...+...++.+..
T Consensus 20 LIThnPtnaTln~fieELkKygvttvVRVCe~TYdt---~~lek~GI~Vldw~f~dg~ppp----~qvv~~w~~l~~~~f 92 (173)
T KOG2836|consen 20 LITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDT---TPLEKEGITVLDWPFDDGAPPP----NQVVDDWLSLVKTKF 92 (173)
T ss_pred EEecCCCchhHHHHHHHHHhcCCeEEEEecccccCC---chhhhcCceEeecccccCCCCc----hHHHHHHHHHHHHHH
Confidence 344556544 35889999999999999887753 3456789999999999976553 4556666665543
Q ss_pred --cCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCCchhhhhHhhhcc
Q 028983 139 --VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRGTRILSP 198 (201)
Q Consensus 139 --~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f~~ 198 (201)
..+..|.|||-+|.||..+++|+-|...|+..++|++-++...++....-|-.|+|.+..
T Consensus 93 ~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krrga~n~kql~~lekyrp 154 (173)
T KOG2836|consen 93 REEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRRGAINSKQLLYLEKYRP 154 (173)
T ss_pred hhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhhccccHHHHHHHHHhCc
Confidence 245669999999999999999999999999999999988877665445577888887764
No 23
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.01 E-value=8.9e-10 Score=79.62 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=55.2
Q ss_pred EEEEeeeCCCCCCCCCCCHHHHHHHHHHHHcc-----CCCcEEEEcCCCCChHHHHHHHHHHHCC-------CCHHHHHH
Q 028983 108 KLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-----RNHPVLIHCKRGKHRTGCLVGCLRKLQK-------WCLSSVFD 175 (201)
Q Consensus 108 ~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~-----~~~pVLVHC~aG~~RTG~vva~~l~~~g-------~s~~~ai~ 175 (201)
.|.+.++.+...|. ..+.+.++++.+... .++||+|||.+|.||||++++++++..+ .+..+++.
T Consensus 4 ~~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (105)
T smart00012 4 HYHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVK 80 (105)
T ss_pred EEeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 35556666666663 135666677766542 2689999999999999999999887432 56778888
Q ss_pred HHHHHhcCCCCchhhhhH
Q 028983 176 EYQRFAAAKARVSDQRGT 193 (201)
Q Consensus 176 ey~~~~~~~~~~~~~~Fi 193 (201)
.++.. ++.......+|.
T Consensus 81 ~ir~~-r~~~~~~~~q~~ 97 (105)
T smart00012 81 ELRKQ-RPGMVQTFEQYL 97 (105)
T ss_pred HHHhh-hhhhCCcHHHHH
Confidence 77766 433433444443
No 24
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.01 E-value=8.9e-10 Score=79.62 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=55.2
Q ss_pred EEEEeeeCCCCCCCCCCCHHHHHHHHHHHHcc-----CCCcEEEEcCCCCChHHHHHHHHHHHCC-------CCHHHHHH
Q 028983 108 KLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-----RNHPVLIHCKRGKHRTGCLVGCLRKLQK-------WCLSSVFD 175 (201)
Q Consensus 108 ~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~-----~~~pVLVHC~aG~~RTG~vva~~l~~~g-------~s~~~ai~ 175 (201)
.|.+.++.+...|. ..+.+.++++.+... .++||+|||.+|.||||++++++++..+ .+..+++.
T Consensus 4 ~~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (105)
T smart00404 4 HYHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVK 80 (105)
T ss_pred EEeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 35556666666663 135666677766542 2689999999999999999999887432 56778888
Q ss_pred HHHHHhcCCCCchhhhhH
Q 028983 176 EYQRFAAAKARVSDQRGT 193 (201)
Q Consensus 176 ey~~~~~~~~~~~~~~Fi 193 (201)
.++.. ++.......+|.
T Consensus 81 ~ir~~-r~~~~~~~~q~~ 97 (105)
T smart00404 81 ELRKQ-RPGMVQTFEQYL 97 (105)
T ss_pred HHHhh-hhhhCCcHHHHH
Confidence 77766 433433444443
No 25
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.94 E-value=2.3e-09 Score=97.75 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=95.2
Q ss_pred CCccccccceEecCCCChh-------h----HHHHHhc--CCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCC
Q 028983 55 LNFSMVDNGIFRSGFPDSA-------N----FSFLQTL--RLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPF 121 (201)
Q Consensus 55 ~nf~~V~~~Lyrsg~p~~~-------~----l~~L~~l--GIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~ 121 (201)
+.+..|+++|..++.|... + ..+|... |=-.|.||+.+...+. .. -.=+...+|+.|+..|.
T Consensus 13 LDltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~-~~----f~g~V~~~~~~Dh~~P~ 87 (434)
T KOG2283|consen 13 LDLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDP-SR----FHGRVARFGFDDHNPPP 87 (434)
T ss_pred ccceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCc-cc----cccceeecCCCCCCCCc
Confidence 3456678888888888742 1 2556533 4445999997633221 11 12355669999999996
Q ss_pred CCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCC--CHHHHHHHHHHHh---c---CCCCchhhhhH
Q 028983 122 VNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKW--CLSSVFDEYQRFA---A---AKARVSDQRGT 193 (201)
Q Consensus 122 ~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~--s~~~ai~ey~~~~---~---~~~~~~~~~Fi 193 (201)
+..-...++.+=.++.......+.|||++|++|||+++++||++.|. +.++|++-|.... + +...+++.+|+
T Consensus 88 L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv 167 (434)
T KOG2283|consen 88 LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYV 167 (434)
T ss_pred HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHH
Confidence 44333444444555555457889999999999999999999998654 3789998887664 2 12257999999
Q ss_pred hhhcc
Q 028983 194 RILSP 198 (201)
Q Consensus 194 e~f~~ 198 (201)
.+|..
T Consensus 168 ~Y~~~ 172 (434)
T KOG2283|consen 168 GYFSR 172 (434)
T ss_pred HHHHH
Confidence 99864
No 26
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.91 E-value=4.8e-09 Score=82.82 Aligned_cols=63 Identities=19% Similarity=0.426 Sum_probs=47.2
Q ss_pred hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc-cCCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 98 NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD-VRNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 98 ~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~-~~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
+...++..|+.|+.+|+.|+..|. .+.|.++++++.+ +.+..+.|||.+|+|||.+..++|.+
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~----~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~l 147 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPD----PEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDL 147 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS-------HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCC----HHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778899999999999998885 7889999999877 35677999999999999977777655
No 27
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.64 E-value=1.5e-07 Score=78.37 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcc----CCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 127 DMIREALKVLLDV----RNHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 127 ~~i~~~l~~l~~~----~~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
+.+.++++.+... ..+||+|||.+|.||||+++|+++.+ ..++..+++..++.. ++.+.....+|.-.
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~-R~~~v~~~~Qy~f~ 225 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQ-RPGMVQTEEQYIFL 225 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-cccccCCHHHHHHH
Confidence 5566677776543 37899999999999999999988653 258999999988876 44454444455433
No 28
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.59 E-value=3e-07 Score=77.98 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcc---CCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 126 EDMIREALKVLLDV---RNHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 126 ~~~i~~~l~~l~~~---~~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
...+.++++.+... .++||+|||.+|.||||+++|++..+ ..++..+++..++.. |+.+...-.+|.-.
T Consensus 175 ~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~-R~~~v~~~~Qy~f~ 252 (258)
T smart00194 175 PKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQ-RPGMVQTEEQYIFL 252 (258)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhc-cccccCCHHHHHHH
Confidence 35566677766542 27899999999999999999987653 368899999988876 55454444444433
No 29
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.40 E-value=1.8e-06 Score=79.84 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=42.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHC--CCCHHHHHHHHHHHhcCC-CCchhhhhHhhhcc
Q 028983 144 VLIHCKRGKHRTGCLVGCLRKLQ--KWCLSSVFDEYQRFAAAK-ARVSDQRGTRILSP 198 (201)
Q Consensus 144 VLVHC~aG~~RTG~vva~~l~~~--g~s~~~ai~ey~~~~~~~-~~~~~~~Fie~f~~ 198 (201)
.+|||++|.||||+++|++++.. ..+.++++.++|.. |++ -....++|.-+.++
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~q-Rng~MVQt~eQy~~l~~~ 525 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNS-RNNRMLEDASQFVQLKAM 525 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhc-CCccccccHHHHHHHHHH
Confidence 37999999999999999998752 57899999999977 544 44466777665543
No 30
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.35 E-value=1.1e-06 Score=78.99 Aligned_cols=108 Identities=19% Similarity=0.336 Sum_probs=74.8
Q ss_pred hhHHHHHhcCCcE--EEEcCCC-CCCCchHHHHhhCCcEEEEeeeCCCC-CCCCCCCHHHHHHHHHHHHc---cCCCcEE
Q 028983 73 ANFSFLQTLRLRS--IIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHK-EPFVNIPEDMIREALKVLLD---VRNHPVL 145 (201)
Q Consensus 73 ~~l~~L~~lGIkt--II~Lr~e-~~~~~~~~~~~~~gi~~~~ipi~d~~-~p~~~i~~~~i~~~l~~l~~---~~~~pVL 145 (201)
..+..|+.+|.+. +|||... -|. .....+..|+.|+.+...++. .|........+. +++...+ ..+.-|+
T Consensus 52 dl~~~l~~~~~~vgl~iDltnt~ryy--~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~-~v~~f~~~~~~~~~LI~ 128 (393)
T KOG2386|consen 52 DLFELLKEHNYKVGLKIDLTNTLRYY--DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVK-LVKGFVDDTKLDDELIG 128 (393)
T ss_pred HHHHHHHhcCceEEEEEeccceeeee--ccccccccceeEEEeccCCcccCCCccchHHHHH-HHHHHHhcccCCCCEEE
Confidence 3567788777655 9999976 222 123345679999999888875 343222222233 3333222 1356699
Q ss_pred EEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHHhcC
Q 028983 146 IHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAA 183 (201)
Q Consensus 146 VHC~aG~~RTG~vva~~l~~-~g~s~~~ai~ey~~~~~~ 183 (201)
|||++|++|||.++++||+. .+|+..+|++.+...+.+
T Consensus 129 vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~ 167 (393)
T KOG2386|consen 129 VHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPP 167 (393)
T ss_pred EeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCC
Confidence 99999999999999999984 589999999999988554
No 31
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.34 E-value=5.5e-06 Score=72.47 Aligned_cols=53 Identities=8% Similarity=0.062 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGT 193 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fi 193 (201)
..+||+|||++|.||||+++|+-..+ ..++.-+++...++- |+.....-++|+
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~q-R~~~Vqt~~QY~ 278 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQK-KYGCMNCLDDYV 278 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhh-CccccCCHHHHH
Confidence 35899999999999999999865442 357788888888866 443433344443
No 32
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.32 E-value=3.5e-06 Score=73.78 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhH
Q 028983 141 NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGT 193 (201)
Q Consensus 141 ~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fi 193 (201)
.+||+|||.+|.||||+++|+...+ ..++.-+++..++.- |+.......+|+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~q-R~~~Vqt~~QY~ 286 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQ-RHNCLSLPQQYI 286 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhh-cccccCCHHHHH
Confidence 4799999999999999999876543 245677888878766 444433455554
No 33
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.28 E-value=5.2e-06 Score=72.99 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=36.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhH
Q 028983 142 HPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGT 193 (201)
Q Consensus 142 ~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fi 193 (201)
+||+|||.+|.||||+++|+-... ...+..+++...++- |+.....-++|+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~q-R~~~Vqt~~QY~ 286 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQ-RHAGIMNFDDYL 286 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-cccccCCHHHHH
Confidence 799999999999999999876432 357778888877766 444433344443
No 34
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.28 E-value=5.6e-06 Score=73.13 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhH
Q 028983 141 NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGT 193 (201)
Q Consensus 141 ~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fi 193 (201)
.+||+|||.+|.||||+++|+-... ..++.-+++..++.- |+.......+|.
T Consensus 247 ~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~q-R~~~Vqt~~QY~ 304 (323)
T PHA02746 247 LGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQ-RHSSVFLPEQYA 304 (323)
T ss_pred CCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-ccccCCCHHHHH
Confidence 3799999999999999999865432 357788888888866 444433444444
No 35
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.16 E-value=2.6e-05 Score=61.82 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=71.5
Q ss_pred HHHHhcCCcEEEEcCCC-CCCCchHHHHhhCCcEEEEeeeCCCCC---CCCCCCHHHHHHHHHHHHc-cCCCcEEEEcCC
Q 028983 76 SFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKE---PFVNIPEDMIREALKVLLD-VRNHPVLIHCKR 150 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e-~~~~~~~~~~~~~gi~~~~ipi~d~~~---p~~~i~~~~i~~~l~~l~~-~~~~pVLVHC~a 150 (201)
++....|-+..|+|... .+.........+ +++++-+.|-.. +..--.++.++..++++.. .+..|+||||.+
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~~~e---rhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~a 102 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVIAAE---RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYA 102 (172)
T ss_pred HHHhhcCCceEEEeecccccccCccccchh---hceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeecc
Confidence 44557889999999985 221111111111 222333333211 1112237889988888765 578999999999
Q ss_pred CCChHHHHHHH--HHHHCCCCHHHHHHHHHHHhcCCCCchhhhhHhhhcccC
Q 028983 151 GKHRTGCLVGC--LRKLQKWCLSSVFDEYQRFAAAKARVSDQRGTRILSPAL 200 (201)
Q Consensus 151 G~~RTG~vva~--~l~~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f~~~~ 200 (201)
|.+||..++.. +-..-.....+..+..+.+ ++.+. .|.+.|..+|..|
T Consensus 103 GISRStA~A~i~a~ala~~~de~ela~~Lra~-sp~at-PN~RliaI~d~~l 152 (172)
T COG5350 103 GISRSTAAALIAALALAPDMDETELAERLRAL-SPYAT-PNPRLIAIADAAL 152 (172)
T ss_pred ccccchHHHHHHHHhhccccChHHHHHHHHhc-CcccC-CChhHHHHHHHHH
Confidence 99999754433 3333466666666666655 44453 5888888877543
No 36
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.15 E-value=4.5e-06 Score=68.66 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHc---cCCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhhHhhh
Q 028983 127 DMIREALKVLLD---VRNHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRGTRIL 196 (201)
Q Consensus 127 ~~i~~~l~~l~~---~~~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f 196 (201)
..+.++++.+.. ..++|++|||.+|.||||+++++.++. ...+..+++..++.. ++.+-..-++|.=.+
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~-R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQ-RPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTT-STTSSSSHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhh-CCCccCCHHHHHHHH
Confidence 445556666543 257999999999999999999988763 357888999988866 444533444554433
No 37
>PHA02738 hypothetical protein; Provisional
Probab=98.12 E-value=2e-05 Score=69.54 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=36.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHHhcCCCCchhhhh
Q 028983 141 NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKARVSDQRG 192 (201)
Q Consensus 141 ~~pVLVHC~aG~~RTG~vva~~l~~------~g~s~~~ai~ey~~~~~~~~~~~~~~F 192 (201)
.+||+|||.+|.||||+++|+-... ..++.-+++..++.- |+.......+|
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~q-R~~~vqt~~QY 283 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQ-RYYSLFIPFQY 283 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhh-hhhccCCHHHH
Confidence 4799999999999999988866432 357788888888866 43343334444
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.08 E-value=2.8e-06 Score=72.62 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcc--CCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 127 DMIREALKVLLDV--RNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 127 ~~i~~~l~~l~~~--~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
..+.+.++-+... +.+|++|||.||.||||+++|+-..
T Consensus 202 ~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~l 241 (302)
T COG5599 202 RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL 241 (302)
T ss_pred HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHH
Confidence 4455566666643 7899999999999999999986544
No 39
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.72 E-value=0.00013 Score=64.88 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=50.2
Q ss_pred CCcEE-EEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHC---CCCHHHHHHHHHHH
Q 028983 105 NGIKL-FQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQ---KWCLSSVFDEYQRF 180 (201)
Q Consensus 105 ~gi~~-~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~---g~s~~~ai~ey~~~ 180 (201)
..++. +..-+.|++.|.-..+.-.+..++....+...+|++|||.+|.||||+++|+=+.++ .-...+++.-+...
T Consensus 250 r~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~l 329 (374)
T KOG0791|consen 250 RKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLEL 329 (374)
T ss_pred ceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHh
Confidence 34443 334556666662111112222233333445688999999999999999999887753 22344555544433
Q ss_pred hcCCC--CchhhhhHhh
Q 028983 181 AAAKA--RVSDQRGTRI 195 (201)
Q Consensus 181 ~~~~~--~~~~~~Fie~ 195 (201)
+.... ....+||+-+
T Consensus 330 R~~R~~mVqte~Qyvfl 346 (374)
T KOG0791|consen 330 RSARMLMVQTEDQYVFL 346 (374)
T ss_pred hhccccccchHHHHHHH
Confidence 22222 2355555543
No 40
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.58 E-value=0.00024 Score=63.84 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHH---H-CC---CCHHHHHHHHHHHhcCCCCchhhhhHhh
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRK---L-QK---WCLSSVFDEYQRFAAAKARVSDQRGTRI 195 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~---~-~g---~s~~~ai~ey~~~~~~~~~~~~~~Fie~ 195 (201)
..+|++|||.+|.||||+++++-.. . .+ -..++++...+.- |..+.....+|+-.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q-R~~~vqt~~Qy~f~ 359 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ-RPGAVQSPLQYLFI 359 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-hhhcccchhHHHHH
Confidence 4689999999999999999975522 2 21 3366666655544 55454455555433
No 41
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.51 E-value=0.00032 Score=69.42 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccC---CCcEEEEcCCCCChHHHHHHH----HHHHC--CCCHHHHHHHHHHH
Q 028983 127 DMIREALKVLLDVR---NHPVLIHCKRGKHRTGCLVGC----LRKLQ--KWCLSSVFDEYQRF 180 (201)
Q Consensus 127 ~~i~~~l~~l~~~~---~~pVLVHC~aG~~RTG~vva~----~l~~~--g~s~~~ai~ey~~~ 180 (201)
..+.+++..+...+ +-||+|||.+|.||||+++.. +++.+ .+..-+++.-.+.-
T Consensus 1046 ~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~Q 1108 (1144)
T KOG0792|consen 1046 NDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQ 1108 (1144)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 44445666665422 559999999999999987653 33334 45566777755544
No 42
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.35 E-value=0.00024 Score=64.83 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=34.2
Q ss_pred EEEeeeCCCCCCCCCCCHHHHHHHHHHHHcc-----CCCcEEEEcCCCCChHHHHHHHHH
Q 028983 109 LFQFAIEGHKEPFVNIPEDMIREALKVLLDV-----RNHPVLIHCKRGKHRTGCLVGCLR 163 (201)
Q Consensus 109 ~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~-----~~~pVLVHC~aG~~RTG~vva~~l 163 (201)
|+..-+.|++.|. ..-.+..+|+.+... .-+||.|||++|.||||+++.+=+
T Consensus 417 yh~~tWPDHGvP~---dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~ 473 (600)
T KOG0790|consen 417 YHYLTWPDHGVPS---DPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDM 473 (600)
T ss_pred hheeecccCCCcC---CccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHH
Confidence 4445556666663 123455577666432 358999999999999997665433
No 43
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.04 E-value=0.00029 Score=70.04 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=45.4
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHHcc---CCCcEEEEcCCCCChHHHHHHH---HHHHCCCCHHHHHHHHHHHh--cCCC
Q 028983 114 IEGHKEPFVNIPEDMIREALKVLLDV---RNHPVLIHCKRGKHRTGCLVGC---LRKLQKWCLSSVFDEYQRFA--AAKA 185 (201)
Q Consensus 114 i~d~~~p~~~i~~~~i~~~l~~l~~~---~~~pVLVHC~aG~~RTG~vva~---~l~~~g~s~~~ai~ey~~~~--~~~~ 185 (201)
+.|++.|. ....+.++++.+... ..||++|||++|.||||+++++ +.++..-..-+++.-....+ |+.-
T Consensus 703 Wpd~gvPe---~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPE---TPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCcc---cchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 34445553 123444466666542 4699999999999999987653 33332222233333233232 2333
Q ss_pred CchhhhhHhhhccc
Q 028983 186 RVSDQRGTRILSPA 199 (201)
Q Consensus 186 ~~~~~~Fie~f~~~ 199 (201)
....++|+-..++.
T Consensus 780 VQt~eQYiFi~~Al 793 (1087)
T KOG4228|consen 780 VQTEEQYIFIHEAL 793 (1087)
T ss_pred cccHHHHHHHHHHH
Confidence 44677777655543
No 44
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=95.63 E-value=0.073 Score=38.29 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.9
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+|+|+|.+|. |+...+. ++...|.+
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a~~-~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKASA-YLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCch-hHHHHHH-HHHHhCCc
Confidence 36789999999984 8876544 45556764
No 45
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=95.58 E-value=0.17 Score=37.45 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=45.1
Q ss_pred cEEEEcCCC-CCCCchHHHHhhCCcE-EEEeeeCCCCC----C-CCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHH
Q 028983 84 RSIIYLCPE-PYPEANTEFLKSNGIK-LFQFAIEGHKE----P-FVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTG 156 (201)
Q Consensus 84 ktII~Lr~e-~~~~~~~~~~~~~gi~-~~~ipi~d~~~----p-~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG 156 (201)
-.|||+|+. ++.....++ ....|. -+++|..+... . ..-.+.+.+.+.+....-..+.+|+|+|..| ++.+
T Consensus 16 ~~ivDvR~~~~~~~~~~~~-~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a 93 (122)
T cd01448 16 VRILDARWYLPDRDGRKEY-LEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDTVVVYDDGG-GFFA 93 (122)
T ss_pred eEEEEeecCCCCCchhhHH-hhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEECCCC-CccH
Confidence 469999986 221111122 222232 35666544211 0 0112245566666544334689999999997 4555
Q ss_pred HHHHHHHHHCCCC
Q 028983 157 CLVGCLRKLQKWC 169 (201)
Q Consensus 157 ~vva~~l~~~g~s 169 (201)
..++.++...|++
T Consensus 94 ~~~~~~l~~~G~~ 106 (122)
T cd01448 94 ARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCC
Confidence 5555666677765
No 46
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.47 E-value=0.03 Score=53.97 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHH----HHCCCCHHHHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLR----KLQKWCLSSVFDEYQRF 180 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l----~~~g~s~~~ai~ey~~~ 180 (201)
+.-||+|||+.|.||||+.+.+=+ |..|..--+|.+.+...
T Consensus 926 RScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHl 970 (1004)
T KOG0793|consen 926 RSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHL 970 (1004)
T ss_pred CCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHH
Confidence 357999999999999997665433 34577766776666665
No 47
>PLN02160 thiosulfate sulfurtransferase
Probab=95.22 E-value=0.15 Score=39.30 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=48.2
Q ss_pred hhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCc---EEEEeeeCCCCCCCCCC-CHHHHHHHHHHHHccCCCcEEEEc
Q 028983 73 ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGI---KLFQFAIEGHKEPFVNI-PEDMIREALKVLLDVRNHPVLIHC 148 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi---~~~~ipi~d~~~p~~~i-~~~~i~~~l~~l~~~~~~pVLVHC 148 (201)
.++..+.+.| ..|||+|+.. ++ ....| ..+++|..... +.-.+ +.+.+.+... +. ..+.+|++||
T Consensus 20 ~e~~~~~~~~-~~lIDVR~~~------E~-~~ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~~~~-~~-~~~~~IivyC 88 (136)
T PLN02160 20 SQAKTLLQSG-HQYLDVRTQD------EF-RRGHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQVSS-LL-NPADDILVGC 88 (136)
T ss_pred HHHHHHHhCC-CEEEECCCHH------HH-hcCCCCCcceecccchhcC-cccccCCHHHHHHHHh-cc-CCCCcEEEEC
Confidence 3454444445 3799999862 11 11223 23567763321 10011 1233332222 22 3578999999
Q ss_pred CCCCChHHHHHHHHHHHCCCC----HHHHHHHHHHH
Q 028983 149 KRGKHRTGCLVGCLRKLQKWC----LSSVFDEYQRF 180 (201)
Q Consensus 149 ~aG~~RTG~vva~~l~~~g~s----~~~ai~ey~~~ 180 (201)
.+|. |+...+..+ ...|.+ ++.-+.++.+.
T Consensus 89 ~sG~-RS~~Aa~~L-~~~G~~~v~~l~GG~~~W~~~ 122 (136)
T PLN02160 89 QSGA-RSLKATTEL-VAAGYKKVRNKGGGYLAWVDH 122 (136)
T ss_pred CCcH-HHHHHHHHH-HHcCCCCeeecCCcHHHHhhC
Confidence 9994 887664444 455664 34444555433
No 48
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.49 E-value=0.28 Score=35.02 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=19.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.||+|||.+|. |+..++. .|...|.+
T Consensus 60 ~~~~ivv~C~~G~-rs~~aa~-~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEG-SSQFVAE-LLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCC-cHHHHHH-HHHHcCce
Confidence 5789999999995 7765444 44456764
No 49
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=94.40 E-value=0.29 Score=35.13 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
...+...+--.|||+|... ++...+-.. ..++|+.+...-. .......+.+++|+|++|.
T Consensus 12 ~~~~~~~~~~~liDvR~~~------e~~~~~i~~~~~~ip~~~~~~~~------------~~~~~~~~~~ivv~C~~G~- 72 (110)
T COG0607 12 AALLLAGEDAVLLDVREPE------EYERGHIPGAAINIPLSELKAAE------------NLLELPDDDPIVVYCASGV- 72 (110)
T ss_pred HHHhhccCCCEEEeccChh------HhhhcCCCcceeeeecccchhhh------------cccccCCCCeEEEEeCCCC-
Confidence 3445566678899999861 111112223 6777776642210 0000246899999999996
Q ss_pred hHHHHHHHHHHHCCCC
Q 028983 154 RTGCLVGCLRKLQKWC 169 (201)
Q Consensus 154 RTG~vva~~l~~~g~s 169 (201)
|++..+. +|..+|.+
T Consensus 73 rS~~aa~-~L~~~G~~ 87 (110)
T COG0607 73 RSAAAAA-ALKLAGFT 87 (110)
T ss_pred ChHHHHH-HHHHcCCc
Confidence 8865444 45555533
No 50
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.32 E-value=0.024 Score=56.85 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+|+.|||..|.+|||+++|+-.....+.
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~ 1046 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMR 1046 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHh
Confidence 489999999999999999988776653333
No 51
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=94.06 E-value=0.15 Score=37.15 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
...+...+..+....+.||+|||.+|. |+.. ++..+...|.+
T Consensus 51 ~~~l~~~~~~l~~~~~~~ivv~C~~G~-rs~~-a~~~L~~~G~~ 92 (109)
T cd01533 51 GAELVLRVGELAPDPRTPIVVNCAGRT-RSII-GAQSLINAGLP 92 (109)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCc-hHHH-HHHHHHHCCCC
Confidence 345555555553335789999999996 8754 44555666764
No 52
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.066 Score=50.80 Aligned_cols=26 Identities=35% Similarity=0.504 Sum_probs=21.3
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
....||||||+.|.|||.-++++-+.
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHH
Confidence 46899999999999999977665443
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=93.95 E-value=0.11 Score=46.57 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=21.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHH
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKL 165 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~ 165 (201)
..+.+|||||..|.|||..++++.+.+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHHH
Confidence 378999999999999999998877664
No 54
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=93.72 E-value=0.35 Score=34.71 Aligned_cols=76 Identities=13% Similarity=0.263 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHH
Q 028983 84 RSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCL 162 (201)
Q Consensus 84 ktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~ 162 (201)
..|||+|+.. ++ ....|. -+++|+...... ...+.+.+.+.+......++.+|+|+|..|. |+.. ++.+
T Consensus 16 ~~iiDvR~~~------e~-~~ghIpgA~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~-~~~~ 85 (106)
T cd01519 16 KVLIDVREPE------EL-KTGKIPGAINIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGV-RSKA-AAEL 85 (106)
T ss_pred EEEEECCCHH------HH-hcCcCCCcEEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcH-HHHH-HHHH
Confidence 5799999851 11 111121 245565432111 0122344555554432245789999999985 7644 4455
Q ss_pred HHHCCCC
Q 028983 163 RKLQKWC 169 (201)
Q Consensus 163 l~~~g~s 169 (201)
+...|..
T Consensus 86 l~~~G~~ 92 (106)
T cd01519 86 ARSLGYE 92 (106)
T ss_pred HHHcCCc
Confidence 5566764
No 55
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=93.62 E-value=0.2 Score=46.39 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=58.0
Q ss_pred ccccceEecCCCChhhH--HHH--HhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHH
Q 028983 59 MVDNGIFRSGFPDSANF--SFL--QTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALK 134 (201)
Q Consensus 59 ~V~~~Lyrsg~p~~~~l--~~L--~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~ 134 (201)
.++.+||.|.......+ ..+ ....+..||++.+..... ......-.++|+|+...+.....+ ...+-++..
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~L-R~~LP~i~~ 365 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDL-RKALPKICS 365 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHH-HHHHHHHHH
Confidence 35566887766552211 112 234677899999774321 112346789999998865432111 223333333
Q ss_pred HHHc----cCCCcEEEEcCCCCChHH-HHHHHHHH
Q 028983 135 VLLD----VRNHPVLIHCKRGKHRTG-CLVGCLRK 164 (201)
Q Consensus 135 ~l~~----~~~~pVLVHC~aG~~RTG-~vva~~l~ 164 (201)
++.. ..+.+|||+|..|+|.+. ++.|++..
T Consensus 366 fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~ 400 (451)
T PF04179_consen 366 FVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCK 400 (451)
T ss_pred HHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHH
Confidence 3322 137899999999999985 44444444
No 56
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=93.36 E-value=0.45 Score=36.94 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=45.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhhCCc-EEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGI-KLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi-~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
..|-..|=+..||+|..+ .++..++ .-++||........ .+....+.+-+..........|+|||+.|+ |
T Consensus 31 k~L~~~~~~~llDVRepe-------Efk~gh~~~siNiPy~~~~~~~-~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~-R 101 (136)
T KOG1530|consen 31 KNLLQHPDVVLLDVREPE-------EFKQGHIPASINIPYMSRPGAG-ALKNPEFLKQVGSSKPPHDKEIIFGCASGV-R 101 (136)
T ss_pred HHHhcCCCEEEEeecCHH-------HhhccCCcceEecccccccccc-ccCCHHHHHHhcccCCCCCCcEEEEeccCc-c
Confidence 334455668889999752 2233344 46888886543221 222333343444443344668999999997 8
Q ss_pred HHHHHHHHH
Q 028983 155 TGCLVGCLR 163 (201)
Q Consensus 155 TG~vva~~l 163 (201)
+....-.++
T Consensus 102 s~~A~~~l~ 110 (136)
T KOG1530|consen 102 SLKATKILV 110 (136)
T ss_pred hhHHHHHHH
Confidence 866544433
No 57
>PRK01415 hypothetical protein; Validated
Probab=92.57 E-value=0.51 Score=40.39 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=26.7
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC----HHHHHHHHHHH
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC----LSSVFDEYQRF 180 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s----~~~ai~ey~~~ 180 (201)
..+.||+++|++|. |+...+ .+|..+|.. ++.=+..|...
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~kAa-~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEKST-SLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred cCCCeEEEECCCCh-HHHHHH-HHHHHcCCCcEEEechHHHHHHHh
Confidence 36789999999995 876554 455666765 44444556554
No 58
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=92.57 E-value=1.3 Score=31.54 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=44.0
Q ss_pred hhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCCCCCCCCCCHHHHHHHHHHHHc--cCCCcEEEEcC
Q 028983 73 ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPVLIHCK 149 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~--~~~~pVLVHC~ 149 (201)
+++..+-..+=-.|||.|+.. ++ ....|. -+++|+............+.+...+..... .++.+|+++|.
T Consensus 3 ~el~~~l~~~~~~liD~R~~~------~~-~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 3 EELKEMLENESVLLIDVRSPE------EY-ERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCS 75 (113)
T ss_dssp HHHHHHHTTTTEEEEEESSHH------HH-HHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEES
T ss_pred HHHHhhhhCCCeEEEEeCCHH------HH-HcCCCCCCccccccccccccccccccccccccccccccccccccceeeee
Confidence 334333344566799999751 22 222332 478888543111112224445544444433 35678999997
Q ss_pred CCCChHHHHHHH
Q 028983 150 RGKHRTGCLVGC 161 (201)
Q Consensus 150 aG~~RTG~vva~ 161 (201)
.|. |++..+++
T Consensus 76 ~~~-~~~~~~~~ 86 (113)
T PF00581_consen 76 SGW-RSGSAAAA 86 (113)
T ss_dssp SSC-HHHHHHHH
T ss_pred ccc-ccchhHHH
Confidence 775 77766665
No 59
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=92.49 E-value=0.57 Score=35.28 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=32.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-------CchHHHHhhCCcEEEEeeeCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYP-------EANTEFLKSNGIKLFQFAIEG 116 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~-------~~~~~~~~~~gi~~~~ipi~d 116 (201)
++.|+..||+.+||+|.-+.+ +.+..++...||.|+|+|--+
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 467899999999999976542 234567778899999998754
No 60
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=92.22 E-value=0.95 Score=31.08 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=18.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+|+|+|..|. |+ ..++.++...|..
T Consensus 54 ~~~~~iv~~c~~g~-~a-~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS-AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HH-HHHHHHHHHcCCC
Confidence 46789999997664 65 3344445555654
No 61
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=90.78 E-value=1.2 Score=39.32 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC----HHHHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC----LSSVFDEYQRF 180 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s----~~~ai~ey~~~ 180 (201)
.+.||+|||++|. |+...+ .+|..+|.+ ++.=+..|...
T Consensus 170 kdk~IvvyC~~G~-Rs~~aa-~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEKAS-AWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred CcCeEEEECCCCc-HHHHHH-HHHHHcCCCcEEEecchHHHHHHh
Confidence 5789999999995 887654 455567775 34444455544
No 62
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=90.66 E-value=0.36 Score=45.84 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKL 165 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~ 165 (201)
.+.+|||||..|.|||..|+.+...+
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLaQll 368 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLAQLL 368 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHHHHH
Confidence 56899999999999999999887654
No 63
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.55 E-value=0.95 Score=40.85 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 142 HPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 142 ~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.||+|||.+|. ||...+ .+|..+|++
T Consensus 333 ~~Ivv~C~sG~-RS~~Aa-~~L~~~G~~ 358 (370)
T PRK05600 333 DNVVVYCASGI-RSADFI-EKYSHLGHE 358 (370)
T ss_pred CcEEEECCCCh-hHHHHH-HHHHHcCCC
Confidence 39999999995 877654 445556663
No 64
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=89.01 E-value=2.6 Score=29.76 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~ 168 (201)
.+.+|+++|..|. |+..++.. |..+|.
T Consensus 53 ~~~~iv~~c~~g~-~s~~~~~~-L~~~g~ 79 (99)
T cd01527 53 GANAIIFHCRSGM-RTQQNAER-LAAISA 79 (99)
T ss_pred CCCcEEEEeCCCc-hHHHHHHH-HHHcCC
Confidence 5789999999985 76654444 333343
No 65
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=88.61 E-value=4.8 Score=29.73 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=19.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+|+|+|..|. |+...+.. +...|.+
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa~~-L~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAAEA-AAQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHHHH-HHHCCCC
Confidence 36789999999985 87765444 3445543
No 66
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=87.92 E-value=1.2 Score=34.92 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHc-----cCCCcEEEEcCCCCCh----HHHHHHHHHH-HCCCCHHHHHHHHHHH
Q 028983 125 PEDMIREALKVLLD-----VRNHPVLIHCKRGKHR----TGCLVGCLRK-LQKWCLSSVFDEYQRF 180 (201)
Q Consensus 125 ~~~~i~~~l~~l~~-----~~~~pVLVHC~aG~~R----TG~vva~~l~-~~g~s~~~ai~ey~~~ 180 (201)
+..++-++...+.+ ...+..+|||++...+ +.+++++|++ ++|||.++|++-+...
T Consensus 45 nL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~ 110 (141)
T PF14671_consen 45 NLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASI 110 (141)
T ss_dssp -HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence 34555555444332 2356788887665544 4688888988 5799999998755543
No 67
>PRK05320 rhodanese superfamily protein; Provisional
Probab=87.43 E-value=2.2 Score=36.60 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=20.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.||+++|++|. |+..++. +|...|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~Aa~-~L~~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKAAI-HMQEVGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHHHHH-HHHHcCCc
Confidence 5789999999995 8876554 45556664
No 68
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=86.51 E-value=3.6 Score=36.83 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
++.+|+|+|..|-.|++.++-.+ ...|+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L-~~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWL-KEAGID 115 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHH-HHcCCC
Confidence 67899999975546988865444 455653
No 69
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=86.20 E-value=1.5 Score=32.01 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=41.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChH
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRT 155 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RT 155 (201)
..|.-..-..+||+|+.. ++. .. |+| + .++++...+.+.+..+....+.+|+++|.+|. |+
T Consensus 11 ~~~~~~~~~~lIDvR~~~------ef~-~g-----hIp--g----Ainip~~~l~~~l~~~~~~~~~~vvlyC~~G~-rS 71 (101)
T TIGR02981 11 FALPLFAAEHWIDVRIPE------QYQ-QE-----HIQ--G----AINIPLKEIKEHIATAVPDKNDTVKLYCNAGR-QS 71 (101)
T ss_pred HhhhhccCCEEEECCCHH------HHh-cC-----CCC--C----CEECCHHHHHHHHHHhCCCCCCeEEEEeCCCH-HH
Confidence 344445667799999862 111 11 222 1 01233445555555543335788999999995 77
Q ss_pred HHHHHHHHHHCCCC
Q 028983 156 GCLVGCLRKLQKWC 169 (201)
Q Consensus 156 G~vva~~l~~~g~s 169 (201)
...+ .++...|.+
T Consensus 72 ~~aa-~~L~~~G~~ 84 (101)
T TIGR02981 72 GMAK-DILLDMGYT 84 (101)
T ss_pred HHHH-HHHHHcCCC
Confidence 6654 344455654
No 70
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=85.42 E-value=2.5 Score=29.75 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+|+++|.+|. |+... +.++...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~a-a~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADMT-ASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHHH-HHHHHHcCCE
Confidence 4688999999985 77544 4444556664
No 71
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=85.12 E-value=5.3 Score=29.12 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCCChHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVG 160 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva 160 (201)
...+|++||..|-.|+...+.
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~ 85 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAAR 85 (113)
T ss_pred CCCEEEEECCCCCcccHHHHH
Confidence 467899999976457655443
No 72
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=83.59 E-value=9.8 Score=27.35 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 127 ~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+.+..+ + .+.+++|+|..|. |+.. ++..|...|++
T Consensus 46 ~~l~~~~~~~-~-~~~~ivv~c~~g~-~s~~-a~~~L~~~G~~ 84 (108)
T PRK00162 46 DSLGAFMRQA-D-FDTPVMVMCYHGN-SSQG-AAQYLLQQGFD 84 (108)
T ss_pred HHHHHHHHhc-C-CCCCEEEEeCCCC-CHHH-HHHHHHHCCch
Confidence 4455555543 2 5789999999985 6543 44455566765
No 73
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=83.31 E-value=3.5 Score=30.33 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
...+.+.++.+....+.+|+++|.+| .|+...+-.+ ...|.+
T Consensus 45 ~~~l~~~l~~l~~~~~~~IVlyC~~G-~rS~~aa~~L-~~~G~~ 86 (104)
T PRK10287 45 LKEVKERIATAVPDKNDTVKLYCNAG-RQSGQAKEIL-SEMGYT 86 (104)
T ss_pred HHHHHHHHHhcCCCCCCeEEEEeCCC-hHHHHHHHHH-HHcCCC
Confidence 34455555554333567899999988 4776654433 445554
No 74
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=82.46 E-value=9.1 Score=32.45 Aligned_cols=94 Identities=19% Similarity=0.303 Sum_probs=66.3
Q ss_pred hhHHHHHhcCCcEEEEcCCCC--CCCchHHHHhhCCcEEEEe---eeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 73 ANFSFLQTLRLRSIIYLCPEP--YPEANTEFLKSNGIKLFQF---AIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e~--~~~~~~~~~~~~gi~~~~i---pi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
+-++.|+.+|++.|-=+.|-. ....+.+++++.|++...+ .+.+... .-.++.+.+.+++..+....-..|++=
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifis 188 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFLS 188 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEEe
Confidence 346889999999999998831 2235678899999998766 4433221 224567888888887755556779999
Q ss_pred cCCCCChHHHHHHHHHHHCCCC
Q 028983 148 CKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 148 C~aG~~RTG~vva~~l~~~g~s 169 (201)
|+. =||.-++.-+-...|.+
T Consensus 189 CTn--Lrt~~vi~~lE~~lGkP 208 (239)
T TIGR02990 189 CTA--LRAATCAQRIEQAIGKP 208 (239)
T ss_pred CCC--chhHHHHHHHHHHHCCC
Confidence 986 37877777776666654
No 75
>PRK09875 putative hydrolase; Provisional
Probab=82.21 E-value=9.2 Score=33.45 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=26.2
Q ss_pred hhHHHHHhcCCcEEEEcCCCCCC---CchHHHHhhCCcEEE
Q 028983 73 ANFSFLQTLRLRSIIYLCPEPYP---EANTEFLKSNGIKLF 110 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e~~~---~~~~~~~~~~gi~~~ 110 (201)
.++..++++|.+|||+.++..+- ....+.+++.|++.+
T Consensus 38 ~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 38 QEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEE
Confidence 36777889999999999986332 234555666676654
No 76
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=81.14 E-value=5 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHc-cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 127 DMIREALKVLLD-VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 127 ~~i~~~l~~l~~-~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+.++.+.. ..+.||+++|..|. |+...+. ++...|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~vv~~c~~g~-rs~~~~~-~l~~~G~~ 84 (101)
T cd01528 43 SEIPERSKELDSDNPDKDIVVLCHHGG-RSMQVAQ-WLLRQGFE 84 (101)
T ss_pred HHHHHHHHHhcccCCCCeEEEEeCCCc-hHHHHHH-HHHHcCCc
Confidence 344344444432 24789999999984 7755543 44446664
No 77
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=80.13 E-value=10 Score=27.57 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCL 162 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~ 162 (201)
.+.+|+|||..+..|+...+..+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l 83 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKF 83 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHH
Confidence 46899999984445776655443
No 78
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=79.71 E-value=2.3 Score=31.84 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=17.8
Q ss_pred CCCcEEEEcC-CCCChHHHHHHHHHH
Q 028983 140 RNHPVLIHCK-RGKHRTGCLVGCLRK 164 (201)
Q Consensus 140 ~~~pVLVHC~-aG~~RTG~vva~~l~ 164 (201)
.+.+|+|||. +| .|+..++..+..
T Consensus 67 ~~~~vv~yC~~sg-~rs~~aa~~L~~ 91 (121)
T cd01530 67 KRRVLIFHCEFSS-KRGPRMARHLRN 91 (121)
T ss_pred CCCEEEEECCCcc-ccHHHHHHHHHH
Confidence 6899999997 76 488776665543
No 79
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=78.40 E-value=2.8 Score=36.93 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=53.0
Q ss_pred hHHHHHhcCCcEEEEcCCCCCC---CchHHHHhhCCcEEEE-eee--CCCCCC---------------------------
Q 028983 74 NFSFLQTLRLRSIIYLCPEPYP---EANTEFLKSNGIKLFQ-FAI--EGHKEP--------------------------- 120 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e~~~---~~~~~~~~~~gi~~~~-ipi--~d~~~p--------------------------- 120 (201)
++..++++|.+|||++++..+- ...++..++.|++.+- -.+ .....+
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~i 122 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGI 122 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCcc
Confidence 5677889999999999985221 2345566666776543 111 110000
Q ss_pred ----------CCCCC--HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHH
Q 028983 121 ----------FVNIP--EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSV 173 (201)
Q Consensus 121 ----------~~~i~--~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~a 173 (201)
...++ +..+-++.......-+-||.+||..|. |.|.-+.-++...|++++.+
T Consensus 123 kaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rv 186 (308)
T PF02126_consen 123 KAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRV 186 (308)
T ss_dssp -ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGE
T ss_pred chhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHe
Confidence 01222 233333333332235899999999886 57877777777777775543
No 80
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=78.12 E-value=8.1 Score=27.05 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.||+++|..|...+...++..++..|..
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 478999999998633344455455555543
No 81
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=77.98 E-value=2 Score=40.25 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=15.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 028983 144 VLIHCKRGKHRTGCLVGCL 162 (201)
Q Consensus 144 VLVHC~aG~~RTG~vva~~ 162 (201)
-...|.+||||||++=+..
T Consensus 459 P~wNCkSGKDRTGmmD~ei 477 (564)
T PRK15378 459 PAWNCKSGKDRTGMMDSEI 477 (564)
T ss_pred eeeccCCCCccccchHHHH
Confidence 3788999999999876644
No 82
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=75.73 E-value=5 Score=29.13 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+.+.+..+.-..+.+|+++|.+|. |+..+ +.++...|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~-~s~~~-~~~l~~~G~~ 104 (118)
T cd01449 63 PEELRALFAALGITPDKPVIVYCGSGV-TACVL-LLALELLGYK 104 (118)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCcHH-HHHHH-HHHHHHcCCC
Confidence 345555555443236789999999884 76654 3344455654
No 83
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=75.28 E-value=13 Score=32.82 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 142 HPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 142 ~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..|+|+|..|-.||+.++.. |...|+.
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~-L~~~G~~ 101 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWL-LAQIGFR 101 (311)
T ss_pred CcEEEEECCCChHHHHHHHH-HHHcCCC
Confidence 34999996544588876544 4445663
No 84
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=75.19 E-value=7.1 Score=33.33 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=51.9
Q ss_pred ecCCC-ChhhH-HHHHhcCCcEEEEcCCC---CCCCchHHHHhhCCcEEEEeeeCCCCCC-CC-CCCHHHHHHHHHHHHc
Q 028983 66 RSGFP-DSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKEP-FV-NIPEDMIREALKVLLD 138 (201)
Q Consensus 66 rsg~p-~~~~l-~~L~~lGIktII~Lr~e---~~~~~~~~~~~~~gi~~~~ipi~d~~~p-~~-~i~~~~i~~~l~~l~~ 138 (201)
+.|.. ...++ ++|++.||+.|||.+.+ ..+....+.|++.||.|+.+-=..+... .- -...+.+.++.+.+.+
T Consensus 48 ~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~ 127 (249)
T PF02571_consen 48 RVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKE 127 (249)
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhh
Confidence 44444 66666 78899999999999986 2334456788889999988654333211 00 1123556677777655
Q ss_pred cCCCcEEE
Q 028983 139 VRNHPVLI 146 (201)
Q Consensus 139 ~~~~pVLV 146 (201)
..++.|++
T Consensus 128 ~~~~~ifl 135 (249)
T PF02571_consen 128 LGGGRIFL 135 (249)
T ss_pred cCCCCEEE
Confidence 44477776
No 85
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.62 E-value=47 Score=28.09 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=64.2
Q ss_pred hhhHHHHHhcCCcEEEEcCCC--CCCCchHHHHhhCCcEEEEee---eCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEE
Q 028983 72 SANFSFLQTLRLRSIIYLCPE--PYPEANTEFLKSNGIKLFQFA---IEGHKEPFVNIPEDMIREALKVLLDVRNHPVLI 146 (201)
Q Consensus 72 ~~~l~~L~~lGIktII~Lr~e--~~~~~~~~~~~~~gi~~~~ip---i~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLV 146 (201)
.+-++-|+.+|++.|.-|.|- +....+.+|++.+|+..+.+- +.|+-+= -.++...+.++.+.+....--.+++
T Consensus 107 ~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~ei-gr~~P~~~y~lAk~~~~~~~DaiFi 185 (238)
T COG3473 107 TAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEI-GRQEPWAVYRLAKEVFTPDADAIFI 185 (238)
T ss_pred HHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchh-cccChHHHHHHHHHhcCCCCCeEEE
Confidence 356788999999999999984 455678899999999877654 4443210 0122334444666665555677999
Q ss_pred EcCCCCChHHHHHHHHHHHCCCC
Q 028983 147 HCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 147 HC~aG~~RTG~vva~~l~~~g~s 169 (201)
-|+. =||--++..+-...|.+
T Consensus 186 SCTn--lRt~eii~~lE~~~G~P 206 (238)
T COG3473 186 SCTN--LRTFEIIEKLERDTGVP 206 (238)
T ss_pred Eeec--cccHHHHHHHHHHhCCc
Confidence 9997 37776666666655544
No 86
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=72.94 E-value=11 Score=25.97 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
...+.+.+..+ ..+.||+|||..|. |+.. ++.++...|.+
T Consensus 43 ~~~~~~~~~~~--~~~~~ivv~c~~g~-~s~~-a~~~l~~~G~~ 82 (96)
T cd01444 43 EDSLDDWLGDL--DRDRPVVVYCYHGN-SSAQ-LAQALREAGFT 82 (96)
T ss_pred HHHHHHHHhhc--CCCCCEEEEeCCCC-hHHH-HHHHHHHcCCc
Confidence 34455444443 36889999999764 5544 44455555654
No 87
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=71.56 E-value=53 Score=28.06 Aligned_cols=43 Identities=5% Similarity=-0.114 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+.+.++.+--.++.+|+|+|..|. +.+..++..+...|..
T Consensus 72 ~~~~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 72 PETFAVAMRELGVNQDKHLVVYDEGNL-FSAPRAWWMLRTFGVE 114 (281)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCC-chHHHHHHHHHHhcCC
Confidence 567777777653346889999998764 5444444444455554
No 88
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=71.40 E-value=9.1 Score=33.62 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+++.+....-..+.+|+++|..|. |++ +++..+...|++
T Consensus 254 ~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~-~~~~~L~~~G~~ 295 (320)
T PLN02723 254 AEELKKRFEQEGISLDSPIVASCGTGV-TAC-ILALGLHRLGKT 295 (320)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCcHH-HHH-HHHHHHHHcCCC
Confidence 456666665432135789999999874 554 444444566764
No 89
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=70.91 E-value=14 Score=29.07 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=40.0
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeee
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAI 114 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi 114 (201)
||.+-.|-..=...|...||+.|+.......+..-.+++++.||.+.+++.
T Consensus 90 lYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~~ 140 (151)
T TIGR02571 90 IYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVPF 140 (151)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeCc
Confidence 898888888778888889999999975432222345688999999999874
No 90
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=70.48 E-value=6.8 Score=27.49 Aligned_cols=29 Identities=7% Similarity=-0.138 Sum_probs=19.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+|+|+|..|. |+..++ .+++..|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~-~~l~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAA-QELLALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHH-HHHHHcCCC
Confidence 35789999999874 776654 344556654
No 91
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=69.06 E-value=11 Score=32.30 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+++.+...--..+.||+++|..|. |++.+ +.+|...|..
T Consensus 216 ~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~-~~~l~~~G~~ 257 (281)
T PRK11493 216 TDELDAIFFGRGVSFDRPIIASCGSGV-TAAVV-VLALATLDVP 257 (281)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHH-HHHHHHcCCC
Confidence 345554444321135789999999986 66544 4444566765
No 92
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=68.80 E-value=18 Score=28.62 Aligned_cols=30 Identities=7% Similarity=0.043 Sum_probs=20.0
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.++.+|+++|..|..|+... +..+...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~a-a~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNA-AKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHhcCCc
Confidence 36899999999886566653 3344455554
No 93
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=68.74 E-value=7 Score=33.90 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=30.1
Q ss_pred HHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 100 ~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
.+++..|++|+- |++++. .+.+.++|+.+.+ -++||+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~-~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKD-IDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCC-SSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhc-CCCCEEEEEe
Confidence 567788999984 888863 4667778888765 6899999963
No 94
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=68.59 E-value=10 Score=28.07 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~ 168 (201)
.+.+|+++|.+|. |+... +.++...|.
T Consensus 71 ~~~~ivv~C~~G~-rs~~a-a~~L~~~G~ 97 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQTA-VRKLKELGL 97 (122)
T ss_pred CCCcEEEECCCCC-cHHHH-HHHHHHcCC
Confidence 5789999999995 76643 345556677
No 95
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=68.47 E-value=1.6 Score=41.07 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCL 162 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~ 162 (201)
-+....+.|++||||||++-+..
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 35667788999999999876543
No 96
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=66.98 E-value=9.4 Score=37.50 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=34.3
Q ss_pred HHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCCCCh
Q 028983 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGKHR 154 (201)
Q Consensus 100 ~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG~~R 154 (201)
.++++.|+.|+- |++++. .+.+.++|+.+.+.. .+||+||-..-||+
T Consensus 320 ~lFe~lG~~Y~G-pvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYIG-PVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEEC-ccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 467788999974 777763 467777888887643 59999998655554
No 97
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=66.47 E-value=10 Score=27.40 Aligned_cols=30 Identities=3% Similarity=-0.017 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+|+|+|..|....+..++..+...|..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 578999999988643344444455556763
No 98
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=66.37 E-value=29 Score=31.13 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 127 ~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
..+.+.+..+.-..+.+|+++|..|. |+.. ++.++...|..
T Consensus 43 ~~l~~~~~~~~~~~~~~IvvyC~~G~-rs~~-aa~~L~~~G~~ 83 (376)
T PRK08762 43 GFLELRIETHLPDRDREIVLICASGT-RSAH-AAATLRELGYT 83 (376)
T ss_pred HHHHHHHhhhcCCCCCeEEEEcCCCc-HHHH-HHHHHHHcCCC
Confidence 34444444433236789999999885 7654 34445555554
No 99
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=64.97 E-value=11 Score=36.42 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=32.9
Q ss_pred HHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 100 ~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
.++++.|++|+- |++++. .+.+...|+.+.+ .++||++|+..=||
T Consensus 237 ~lFeelGf~YiG-PiDGHn-------i~~Li~~Lk~~kd-~~gPvllHv~T~KG 281 (627)
T COG1154 237 TLFEELGFNYIG-PIDGHN-------LEELIPTLKNAKD-LKGPVLLHVVTKKG 281 (627)
T ss_pred hhHHHhCCeeEC-CcCCCC-------HHHHHHHHHHHhc-CCCCEEEEEEecCC
Confidence 367788999874 777752 4667778888876 78999999754443
No 100
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=64.82 E-value=10 Score=26.78 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+|+++|..|. |++.++. .+...|.+
T Consensus 64 ~~~~vv~~c~~g~-~s~~~a~-~L~~~G~~ 91 (105)
T cd01525 64 KGKIIVIVSHSHK-HAALFAA-FLVKCGVP 91 (105)
T ss_pred cCCeEEEEeCCCc-cHHHHHH-HHHHcCCC
Confidence 3689999999986 7765544 44455653
No 101
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=64.40 E-value=14 Score=36.08 Aligned_cols=44 Identities=25% Similarity=0.459 Sum_probs=31.3
Q ss_pred HHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCCC
Q 028983 101 FLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (201)
Q Consensus 101 ~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG~ 152 (201)
+++..|++|+. |+++++ .+.+.++|+.+.+.. ++|++|||..=|
T Consensus 277 ~fe~~G~~y~g-~iDGHd-------~~~L~~al~~~k~~~~~~P~vihv~T~K 321 (677)
T PLN02582 277 LFEELGLYYIG-PVDGHN-------IDDLVTILREVKSTKTTGPVLIHVVTEK 321 (677)
T ss_pred hHHHcCCeEEe-eeCCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEecC
Confidence 46777888863 777763 477788888876543 799999985433
No 102
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=63.11 E-value=10 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.||+|+|..| .|+. .++.++...|..
T Consensus 60 ~~~~ivv~c~~g-~~s~-~~~~~l~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCASG-WRSA-LAGKTLQDMGLK 87 (103)
T ss_pred CCCeEEEEcCCC-CcHH-HHHHHHHHcChH
Confidence 578999999988 4764 344444455653
No 103
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=61.44 E-value=9.7 Score=32.49 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=48.2
Q ss_pred ecCCC-ChhhH-HHHHhcCCcEEEEcCCC---CCCCchHHHHhhCCcEEEEeeeCCCCC-CCCC-CCHHHHHHHHHHHHc
Q 028983 66 RSGFP-DSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKE-PFVN-IPEDMIREALKVLLD 138 (201)
Q Consensus 66 rsg~p-~~~~l-~~L~~lGIktII~Lr~e---~~~~~~~~~~~~~gi~~~~ipi~d~~~-p~~~-i~~~~i~~~l~~l~~ 138 (201)
+.|.. +.+++ .+|++.+|+.|||.+.+ ..+....+.|++.||.|+.+-=..+.. +.-. ...+.+.++.+.+.+
T Consensus 47 ~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~ 126 (248)
T PRK08057 47 RVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAP 126 (248)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhc
Confidence 34545 66666 77899999999999986 223345678888999998864332211 1000 112345566666644
Q ss_pred cCCCcEEE
Q 028983 139 VRNHPVLI 146 (201)
Q Consensus 139 ~~~~pVLV 146 (201)
. +.||+
T Consensus 127 ~--~~vll 132 (248)
T PRK08057 127 F--RRVLL 132 (248)
T ss_pred c--CCEEE
Confidence 2 56665
No 104
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=60.90 E-value=14 Score=27.66 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=19.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.++.+|+|+|.+|-.|+..++ .++...|..
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~-~~L~~~G~~ 113 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA-WLLESLGID 113 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH-HHHHHcCCc
Confidence 367899999975435777554 444556763
No 105
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=58.52 E-value=80 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHccCCCc--EEEEcCCCC
Q 028983 126 EDMIREALKVLLDVRNHP--VLIHCKRGK 152 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~p--VLVHC~aG~ 152 (201)
.+.+.++++.+.+ .+.| +|+||.++.
T Consensus 159 ~~ei~~av~~~r~-~g~~~i~LLhC~s~Y 186 (347)
T COG2089 159 IEEIEEAVAILRE-NGNPDIALLHCTSAY 186 (347)
T ss_pred HHHHHHHHHHHHh-cCCCCeEEEEecCCC
Confidence 5778889998876 4444 999999876
No 106
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=58.49 E-value=22 Score=34.32 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+.+.+..+--..+.+|++||..|. |++.+. ..+...|+.
T Consensus 208 ~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~-~~L~~lG~~ 249 (610)
T PRK09629 208 RQDMPEILRDLGITPDKEVITHCQTHH-RSGFTY-LVAKALGYP 249 (610)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCCCh-HHHHHH-HHHHHcCCC
Confidence 456776665542236789999999985 666544 444566765
No 107
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.51 E-value=45 Score=28.54 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHhcCCcEEEEcCCCC-CC-Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC--CcEEEE
Q 028983 75 FSFLQTLRLRSIIYLCPEP-YP-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN--HPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~-~~-~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~--~pVLVH 147 (201)
+++.++.|++..+++..-. ++ +. ....+.+.|...+. +.|+.- .++.+++.+.++.+...-+ -|+-+|
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~--l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFY--IVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEE--EecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4667788999888877542 21 11 22233456777654 444311 1235788888888865333 789999
Q ss_pred cCCCCChHHHHHHHHH
Q 028983 148 CKRGKHRTGCLVGCLR 163 (201)
Q Consensus 148 C~aG~~RTG~vva~~l 163 (201)
|+.- -|+..|-.+
T Consensus 190 ~Hn~---~Gla~AN~l 202 (266)
T cd07944 190 AHNN---LQLALANTL 202 (266)
T ss_pred eCCC---ccHHHHHHH
Confidence 9853 344444443
No 108
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=56.99 E-value=16 Score=29.74 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQ 166 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~ 166 (201)
.++-|.|+|..|||.|....+.-++..
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAa 46 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIA 46 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHh
Confidence 467899999999999998888776653
No 109
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=56.12 E-value=33 Score=23.63 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028983 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (201)
Q Consensus 127 ~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~ 168 (201)
+.+...+..+ ..+.+|+++|..|. |+.. ++..+...|.
T Consensus 39 ~~~~~~~~~~--~~~~~vvl~c~~g~-~a~~-~a~~L~~~G~ 76 (90)
T cd01524 39 DELRDRLNEL--PKDKEIIVYCAVGL-RGYI-AARILTQNGF 76 (90)
T ss_pred HHHHHHHHhc--CCCCcEEEEcCCCh-hHHH-HHHHHHHCCC
Confidence 4444444433 35689999999874 5444 4444455554
No 110
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=55.76 E-value=35 Score=28.31 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=45.7
Q ss_pred HHHHHhcCCcEEEEcCCC-C--CCC----chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEE
Q 028983 75 FSFLQTLRLRSIIYLCPE-P--YPE----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLI 146 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e-~--~~~----~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLV 146 (201)
++.+++.|++..+++..- . ... ...+.+.+.|...+.+.=... .++.+.+.+.++.+.+.- +-++-+
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G-----~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG-----LATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC-----CcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 466788999999999532 2 221 233445567887776442211 234578888888887633 378889
Q ss_pred EcCCC
Q 028983 147 HCKRG 151 (201)
Q Consensus 147 HC~aG 151 (201)
||+.-
T Consensus 196 H~Hn~ 200 (265)
T cd03174 196 HTHNT 200 (265)
T ss_pred EeCCC
Confidence 98753
No 111
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=55.49 E-value=69 Score=25.32 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=24.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEe
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQF 112 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~i 112 (201)
.+.|+++|+++|+-+-......-...+.+..+++++..
T Consensus 4 ~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~ 41 (162)
T cd07037 4 VEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVR 41 (162)
T ss_pred HHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEec
Confidence 46789999999999888633211222223357887653
No 112
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=53.02 E-value=42 Score=26.84 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=37.6
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCC-CCchHHHHhhCCcEEEEee
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFA 113 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~-~~~~~~~~~~~gi~~~~ip 113 (201)
||.+-.|-+.=...|...||+.||....-.. ...-.+.+++.||++.+++
T Consensus 104 LYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~~~~ 154 (168)
T PHA02588 104 MYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIEVIQIP 154 (168)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCEEEEeC
Confidence 8999888887778888899999998765211 1123468889999988764
No 113
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=51.46 E-value=50 Score=25.20 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCC-CCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKR-GKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~a-G~~RTG~vva~~l~~~g~s 169 (201)
.+.+.+.+..+-=..+.+|+|.|.. +.+..++.+...+.+.|..
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~ 124 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHP 124 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCC
Confidence 4566767665432457899999975 2234444445555566765
No 114
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=51.44 E-value=26 Score=33.86 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=30.5
Q ss_pred HhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 102 LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 102 ~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++..|+.|+. |+++++ .+.+.++++.+.+ .++|++|||..=|++
T Consensus 234 f~~~G~~~~~-~vDGhd-------~~~l~~al~~ak~-~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 234 FEELGFNYIG-PVDGHD-------LLELIETLKNAKK-LKGPVFLHIQTKKGK 277 (617)
T ss_pred HHHcCCcEEc-ccCCCC-------HHHHHHHHHHHhc-CCCCEEEEEEecCCC
Confidence 5667888876 887752 4677778887654 467999997544444
No 115
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=50.91 E-value=46 Score=28.30 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=40.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCC------------CCC---CC-CCHHHHHHHHHHHHc-
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHK------------EPF---VN-IPEDMIREALKVLLD- 138 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~------------~p~---~~-i~~~~i~~~l~~l~~- 138 (201)
++.+++||.-+.+.-.. .-.+++.+.|+.++.|+-.+-. .|. .. -+.+.|.++++.+..
T Consensus 63 ~~~~~~gi~f~stpfd~----~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~ 138 (241)
T PF03102_consen 63 EYCKELGIDFFSTPFDE----ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREA 138 (241)
T ss_dssp HHHHHTT-EEEEEE-SH----HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEECCCCH----HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhc
Confidence 34456787766655443 2345666778888887765532 221 01 136889999999844
Q ss_pred cCCCcEEEEcCCCC
Q 028983 139 VRNHPVLIHCKRGK 152 (201)
Q Consensus 139 ~~~~pVLVHC~aG~ 152 (201)
.+..-+|.||.++.
T Consensus 139 ~~~~l~llHC~s~Y 152 (241)
T PF03102_consen 139 GNEDLVLLHCVSSY 152 (241)
T ss_dssp CT--EEEEEE-SSS
T ss_pred CCCCEEEEecCCCC
Confidence 34566899999873
No 116
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=49.19 E-value=42 Score=29.00 Aligned_cols=130 Identities=9% Similarity=-0.008 Sum_probs=73.7
Q ss_pred EecCCCChhhH-HHHHhcCCcEEEEcCCC---CCCCchHHHHhhCCcEEEEeeeCCCCC-CCCCCCHHHHHHHHHHHHcc
Q 028983 65 FRSGFPDSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKE-PFVNIPEDMIREALKVLLDV 139 (201)
Q Consensus 65 yrsg~p~~~~l-~~L~~lGIktII~Lr~e---~~~~~~~~~~~~~gi~~~~ipi~d~~~-p~~~i~~~~i~~~l~~l~~~ 139 (201)
-.+|....+.+ ++|++.+|+-+||-+.+ ..+..-...|+..||.|+.+-=+.+.. ..--+..+.+.++.+.+.
T Consensus 48 ~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~-- 125 (257)
T COG2099 48 RVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAK-- 125 (257)
T ss_pred eecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHh--
Confidence 45666676665 88999999999999986 233445567888999998765444322 111122355666666653
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHH----------------H-HCCCCHHHHHHHHHHHhcCCCCchhhhhHhhhcccC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLR----------------K-LQKWCLSSVFDEYQRFAAAKARVSDQRGTRILSPAL 200 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l----------------~-~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie~f~~~~ 200 (201)
+.+...+|=.+.++=.-+..+.-. . ..|...+.++. ..+|-+...|..|++++.++.
T Consensus 126 ~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia----~~GPfs~~~n~all~q~~id~ 199 (257)
T COG2099 126 QLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIA----MRGPFSEEDNKALLEQYRIDV 199 (257)
T ss_pred ccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEE----ecCCcChHHHHHHHHHhCCCE
Confidence 233445554433322212111100 0 11444444443 234444458999999998864
No 117
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=48.87 E-value=53 Score=28.96 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=31.5
Q ss_pred hhHHHHHhcCCcEEEEcCCC----------CCCCchHHHHhhCCc-EEEEeeeCCC
Q 028983 73 ANFSFLQTLRLRSIIYLCPE----------PYPEANTEFLKSNGI-KLFQFAIEGH 117 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e----------~~~~~~~~~~~~~gi-~~~~ipi~d~ 117 (201)
.-++.|++.|++.|+-+... +.....++.+++.|+ .|..+|....
T Consensus 245 ~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 245 DVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp HHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred HHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 35788999999999988874 223345788888999 8999998765
No 118
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=48.27 E-value=15 Score=25.85 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=22.7
Q ss_pred cCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 028983 148 CKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (201)
Q Consensus 148 C~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~ 180 (201)
|-.|. |..+-..+.+...|+|.++++++|-..
T Consensus 25 ~I~Gt-RI~V~~Il~~l~~G~s~eeil~dyp~L 56 (79)
T COG2442 25 CIRGT-RIPVWDILEMLAAGESIEEILADYPDL 56 (79)
T ss_pred eEeCc-eecHHHHHHHHHCCCCHHHHHHhCCCC
Confidence 55565 655555555556899999999999744
No 119
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=47.06 E-value=1.1e+02 Score=27.84 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-..... .+.+.+ +..+|+++...=+.. -......... ..++|..+-|+.|-|
T Consensus 7 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~~i~~v~~~hE~~--------A~~mAdgyar---~tg~~gv~~~t~GpG 74 (432)
T TIGR00173 7 VEELVRLGVRHVVISPGSRST-PLALAAAEHPRLRVHVHIDERS--------AGFFALGLAK---ASGRPVAVVCTSGTA 74 (432)
T ss_pred HHHHHHcCCCEEEECCCcccH-HHHHHHHhCCCcEEEEecCCcc--------HHHHHHHHHh---ccCCCEEEEECCcch
Confidence 478999999999999987322 222333 335788876443321 1122222111 124455555555555
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=+-++.+++-.
T Consensus 75 ~~N~l~gl~~A 85 (432)
T TIGR00173 75 VANLLPAVIEA 85 (432)
T ss_pred HhhhhHHHHHh
Confidence 55555555444
No 120
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.67 E-value=65 Score=27.24 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=43.7
Q ss_pred HHHHHhcCCcEEEEcCCC-CCC-Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCC-cEEEEc
Q 028983 75 FSFLQTLRLRSIIYLCPE-PYP-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHC 148 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e-~~~-~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~-pVLVHC 148 (201)
+++.++.|+...+++... ..+ +. ..+.+.+.|...+. +.|..- .++...+.+.++.+.+.-+. |+-+||
T Consensus 118 i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~--l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~ 192 (263)
T cd07943 118 IGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVY--VTDSAG---AMLPDDVRERVRALREALDPTPVGFHG 192 (263)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEE--EcCCCC---CcCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 466678898888888432 111 11 22333456777654 444311 12357888888888764444 899999
Q ss_pred CCCC
Q 028983 149 KRGK 152 (201)
Q Consensus 149 ~aG~ 152 (201)
+.-.
T Consensus 193 Hn~~ 196 (263)
T cd07943 193 HNNL 196 (263)
T ss_pred cCCc
Confidence 8644
No 121
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=46.50 E-value=34 Score=30.00 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHH
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLR 163 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l 163 (201)
.+.+...+....=..+.||++-|..|..-+-..++++|
T Consensus 221 ~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r 258 (286)
T KOG1529|consen 221 AEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALER 258 (286)
T ss_pred HHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHh
Confidence 45666666553224589999999999754444444444
No 122
>TIGR03586 PseI pseudaminic acid synthase.
Probab=46.31 E-value=1.8e+02 Score=25.96 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=41.6
Q ss_pred HhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCC------------CCCC---CC-CCHHHHHHHHHHHHccCC-
Q 028983 79 QTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGH------------KEPF---VN-IPEDMIREALKVLLDVRN- 141 (201)
Q Consensus 79 ~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~------------~~p~---~~-i~~~~i~~~l~~l~~~~~- 141 (201)
+++||..+-..-.. .-.+++.+.|+..++++-.+. +.|. .. .+.+.+..+++.+.+..+
T Consensus 87 ~~~Gi~~~stpfd~----~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~ 162 (327)
T TIGR03586 87 KELGLTIFSSPFDE----TAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCK 162 (327)
T ss_pred HHhCCcEEEccCCH----HHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 45677766554443 223556666777777666442 1120 01 136788888888875433
Q ss_pred CcEEEEcCCCC
Q 028983 142 HPVLIHCKRGK 152 (201)
Q Consensus 142 ~pVLVHC~aG~ 152 (201)
.-+|.||.++.
T Consensus 163 ~i~LlhC~s~Y 173 (327)
T TIGR03586 163 DLVLLKCTSSY 173 (327)
T ss_pred cEEEEecCCCC
Confidence 45899998774
No 123
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=45.84 E-value=32 Score=32.08 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 125 PEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 125 ~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
+...+...+..+ ..+.|++++|.+|. ||..++. ++...|++
T Consensus 435 P~~~l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~-~L~~~G~~ 475 (482)
T PRK01269 435 PFYKLSTQFGDL--DQSKTYLLYCDRGV-MSRLQAL-YLREQGFS 475 (482)
T ss_pred CHHHHHHHHhhc--CCCCeEEEECCCCH-HHHHHHH-HHHHcCCc
Confidence 334444433333 35679999999996 7766544 44456653
No 124
>smart00400 ZnF_CHCC zinc finger.
Probab=45.61 E-value=23 Score=22.61 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=25.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHH
Q 028983 145 LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDE 176 (201)
Q Consensus 145 LVHC~aG~~RTG~vva~~l~~~g~s~~~ai~e 176 (201)
..||.+. ++.|-++.+++.+.|.+..+|++.
T Consensus 23 ~~~Cf~c-g~gGd~i~fv~~~~~~sf~eA~~~ 53 (55)
T smart00400 23 FFHCFGC-GAGGNVISFLMKYDKLSFVEAVKK 53 (55)
T ss_pred EEEEeCC-CCCCCHHHHHHHHHCcCHHHHHHH
Confidence 5788864 578888999999999999998874
No 125
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=45.58 E-value=24 Score=30.19 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.8
Q ss_pred EecCCCChhhH-HHHHhcCCcEEEEcCCC---CCCCchHHHHhhCCcEEEEe
Q 028983 65 FRSGFPDSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQF 112 (201)
Q Consensus 65 yrsg~p~~~~l-~~L~~lGIktII~Lr~e---~~~~~~~~~~~~~gi~~~~i 112 (201)
.+.+..+..++ ++|++.+++.|||...+ ..+......|++.||.|+.+
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 34566666667 88899999999999986 23344567788899999887
No 126
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=45.56 E-value=75 Score=25.19 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=36.2
Q ss_pred HHHHhc-CCcEEEEcCCC--CCCCchHHHHhhCCcEEEEeeeCC--CCCCCCCCCHHH-HHHHHHHHHccCCCcEEEEcC
Q 028983 76 SFLQTL-RLRSIIYLCPE--PYPEANTEFLKSNGIKLFQFAIEG--HKEPFVNIPEDM-IREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 76 ~~L~~l-GIktII~Lr~e--~~~~~~~~~~~~~gi~~~~ipi~d--~~~p~~~i~~~~-i~~~l~~l~~~~~~pVLVHC~ 149 (201)
+.|++. |.+ +-.+|++ .+.....+.+++.|++++..-+.. +..+ +.+. +..+++.+ +.+.-||+|+.
T Consensus 88 ~~l~~~~g~~-~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~~~----~~~~i~~~~~~~~--~~g~Iil~Hd~ 160 (191)
T TIGR02764 88 EIIEKLTGKK-PTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSRDWKNP----GVESIVDRVVKNT--KPGDIILLHAS 160 (191)
T ss_pred HHHHHHhCCC-CCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCCccCCC----CHHHHHHHHHhcC--CCCCEEEEeCC
Confidence 445543 444 3445655 233445667788899987655543 2222 2333 23233322 24556899995
Q ss_pred CC
Q 028983 150 RG 151 (201)
Q Consensus 150 aG 151 (201)
.+
T Consensus 161 ~~ 162 (191)
T TIGR02764 161 DS 162 (191)
T ss_pred CC
Confidence 43
No 127
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=45.23 E-value=1.5e+02 Score=23.23 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=42.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-......-...+.+..+|+++...=+.. -......... ..++|..+-|+.|-+=
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~--------A~~mA~gyar---~tg~~~v~~~t~GpG~ 75 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEA--------AAFAASAEAK---LTGKLGVCLGSSGPGA 75 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHH--------HHHHHHHHHH---HhCCCEEEEECCCCcH
Confidence 4789999999999998873322222222335788874322110 1112222222 2345555556666666
Q ss_pred HHHHHHHHHH
Q 028983 155 TGCLVGCLRK 164 (201)
Q Consensus 155 TG~vva~~l~ 164 (201)
+.++.+++-.
T Consensus 76 ~n~~~~l~~A 85 (164)
T cd07039 76 IHLLNGLYDA 85 (164)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 128
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=44.61 E-value=56 Score=28.60 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQK 167 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g 167 (201)
.+.+..+.+..-=...++|+++|..|. |++....++..+.+
T Consensus 219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~-~As~~~~al~~lg~ 259 (285)
T COG2897 219 PEEIARLYADAGIDPDKEVIVYCGSGV-RASVTWLALAELGG 259 (285)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcCCch-HHHHHHHHHHHhCC
Confidence 345554443322246899999999986 66555444444433
No 129
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=43.89 E-value=36 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.488 Sum_probs=17.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCC
Q 028983 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQK 167 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~RTG~vva~~l~~~g 167 (201)
..+.+|+++|..|. |+..+ +.++...|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~-~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARA-AKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHH-HHHHHHhC
Confidence 46899999999974 55443 44444444
No 130
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.75 E-value=1.4e+02 Score=26.52 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=50.1
Q ss_pred eEecCCCChhhHHHH----HhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCC------------CCC---CC-
Q 028983 64 IFRSGFPDSANFSFL----QTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHK------------EPF---VN- 123 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L----~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~------------~p~---~~- 123 (201)
+|..-....+.+..| +++||..+-+.-.. .-.+++.+.|+..++|+-.+.. .|. ..
T Consensus 67 ~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfd~----~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 67 MLKKLELSEEDHRELKEYCESKGIEFLSTPFDL----ESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcEEEEeCCH----HHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC
Confidence 444444444455444 46787766554433 2345667778888887765531 221 01
Q ss_pred CCHHHHHHHHHHHHccCC---CcEEEEcCCC
Q 028983 124 IPEDMIREALKVLLDVRN---HPVLIHCKRG 151 (201)
Q Consensus 124 i~~~~i~~~l~~l~~~~~---~pVLVHC~aG 151 (201)
-+.+.|..+++.+.+..+ .-+|+||.++
T Consensus 143 atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 143 ATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 146788889999875333 2689999986
No 131
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=41.49 E-value=28 Score=25.14 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=26.6
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhc
Q 028983 145 LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAA 182 (201)
Q Consensus 145 LVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~ 182 (201)
..||.+. +..|-++.+++.+.|.+..+|++......+
T Consensus 54 ~~~Cf~C-g~~Gd~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFGC-GKGGDVIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETTT---EE-HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECCC-CCCCcHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 7999975 688999999999999999999987766543
No 132
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=41.27 E-value=56 Score=31.87 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=31.5
Q ss_pred HHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCCCCh
Q 028983 99 TEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGKHR 154 (201)
Q Consensus 99 ~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG~~R 154 (201)
.+.++..|..|+- |++++. .+.+.++|+.+.+.. ++|++|||..-||+
T Consensus 276 ~~~fe~fG~~~~g-~vDGHd-------~~~l~~al~~~k~~~~~~P~vI~~~T~KGk 324 (641)
T PLN02234 276 STLFEELGFHYVG-PVDGHN-------IDDLVSILETLKSTKTIGPVLIHVVTEKGR 324 (641)
T ss_pred HHHHHHcCCEEEe-eECCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEEecCC
Confidence 4566667777651 566652 477777888765533 58999998654444
No 133
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=41.24 E-value=1.1e+02 Score=27.30 Aligned_cols=107 Identities=20% Similarity=0.335 Sum_probs=58.8
Q ss_pred CCCCCCCeeeeCCCCccccccc--------eEecCCCCh---hhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEE
Q 028983 42 PVVTGDEVTLIPPLNFSMVDNG--------IFRSGFPDS---ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLF 110 (201)
Q Consensus 42 ~~~~~~~~~~~pp~nf~~V~~~--------Lyrsg~p~~---~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~ 110 (201)
++..+.++...|+..|+++.+. +...|.-+. .-++..+.+||+||=-+|..+-.+..++.++..|.+.+
T Consensus 134 pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~V 213 (354)
T KOG0025|consen 134 PLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEV 213 (354)
T ss_pred ChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceE
Confidence 3455667777777777776432 333332221 23466678899998777765433345666666666554
Q ss_pred EeeeCCCCCCCCCCCHHHHH--HHHHHHHccCCCc-EEEEcCCCCChHHHHHHHHHH
Q 028983 111 QFAIEGHKEPFVNIPEDMIR--EALKVLLDVRNHP-VLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 111 ~ipi~d~~~p~~~i~~~~i~--~~l~~l~~~~~~p-VLVHC~aG~~RTG~vva~~l~ 164 (201)
++++++. +..+...+ ..+| +.+.|-+| |+.+.++-||-
T Consensus 214 -------------iTeeel~~~~~~k~~~~-~~~prLalNcVGG--ksa~~iar~L~ 254 (354)
T KOG0025|consen 214 -------------ITEEELRDRKMKKFKGD-NPRPRLALNCVGG--KSATEIARYLE 254 (354)
T ss_pred -------------ecHHHhcchhhhhhhcc-CCCceEEEeccCc--hhHHHHHHHHh
Confidence 1233322 11122122 3344 67889887 56666666664
No 134
>PRK07411 hypothetical protein; Validated
Probab=41.05 E-value=32 Score=31.21 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+|+|||..|. |+... +.++..+|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~a-a~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKA-LGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHHcCCC
Confidence 5689999999886 88664 4455566765
No 135
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.49 E-value=2.8e+02 Score=24.98 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHhcCCcEEEEcCCCC-CC-C---chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 75 FSFLQTLRLRSIIYLCPEP-YP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~-~~-~---~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
+++.++.|+...++.-... .+ + .....+.+.|...+.++ |+.- ..+...+.+.++.+.+.-+-|+-+||+
T Consensus 122 v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~H 196 (378)
T PRK11858 122 VEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC--DTVG---ILDPFTMYELVKELVEAVDIPIEVHCH 196 (378)
T ss_pred HHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe--ccCC---CCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3567788998877753321 11 1 12234456788876655 3211 123567777888776544678999998
Q ss_pred CCC
Q 028983 150 RGK 152 (201)
Q Consensus 150 aG~ 152 (201)
.-.
T Consensus 197 nd~ 199 (378)
T PRK11858 197 NDF 199 (378)
T ss_pred CCc
Confidence 533
No 136
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=40.38 E-value=22 Score=23.05 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=17.1
Q ss_pred CCCChHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 028983 150 RGKHRTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (201)
Q Consensus 150 aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~ 180 (201)
.|. |-.+-..+-+...|||.+++.++|-..
T Consensus 15 ~GT-RI~v~~i~~~~~~G~s~eeI~~~yp~L 44 (56)
T PF04255_consen 15 RGT-RIPVRDILDLLAAGESPEEIAEDYPSL 44 (56)
T ss_dssp TTS-S-BHHHHHHHHHTT--HHHHHHHSTT-
T ss_pred cCc-eecHHHHHHHHHcCCCHHHHHHHCCCC
Confidence 453 544444444448899999999988643
No 137
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=40.30 E-value=1.5e+02 Score=27.52 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHhcCCcEEEEcCCC--CCCC-----chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 75 FSFLQTLRLRSIIYLCPE--PYPE-----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e--~~~~-----~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
++..++.|....++++.. +... .....+.+.|+..+. +.|+.- -++...+.+.++.+.+.-+-|+-+|
T Consensus 129 v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~--i~Dt~G---~l~P~~v~~lv~alk~~~~~pi~~H 203 (448)
T PRK12331 129 VKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSIC--IKDMAG---ILTPYVAYELVKRIKEAVTVPLEVH 203 (448)
T ss_pred HHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--EcCCCC---CCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 455667787666555543 1111 122334456766544 444311 1234677778887766445889999
Q ss_pred cCC
Q 028983 148 CKR 150 (201)
Q Consensus 148 C~a 150 (201)
|+.
T Consensus 204 ~Hn 206 (448)
T PRK12331 204 THA 206 (448)
T ss_pred ecC
Confidence 874
No 138
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=40.01 E-value=1e+02 Score=29.57 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=30.5
Q ss_pred HHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 100 ~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
..++..|+.++. ++++++ .+.+.++++...+ .++|++|||..=+++
T Consensus 201 ~~~~a~G~~~~~-v~DG~D-------~~~l~~a~~~a~~-~~gP~~i~~~T~kG~ 246 (581)
T PRK12315 201 NLFKAMGLDYRY-VEDGND-------IESLIEAFKEVKD-IDHPIVLHIHTLKGK 246 (581)
T ss_pred HHHHhcCCeEEE-eeCCCC-------HHHHHHHHHHHHh-CCCCEEEEEEeecCC
Confidence 456778888875 445542 4667777777543 579999998554443
No 139
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=39.64 E-value=1.7e+02 Score=23.95 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=43.6
Q ss_pred HHHHHhcCCcEEEEcCCCC-CC-Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEc
Q 028983 75 FSFLQTLRLRSIIYLCPEP-YP-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHC 148 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~-~~-~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC 148 (201)
+.+.+++|++..+++-... ++ +. ..+.+.+.|+..+.++=... ..+...+.+.++.+.+.- +.++-+||
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G-----~~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVG-----IMTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS------S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccC-----CcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4667889999988887642 21 11 23344456887766552221 123577888888887643 38898998
Q ss_pred CCC
Q 028983 149 KRG 151 (201)
Q Consensus 149 ~aG 151 (201)
+.-
T Consensus 189 Hnd 191 (237)
T PF00682_consen 189 HND 191 (237)
T ss_dssp BBT
T ss_pred cCC
Confidence 753
No 140
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=39.48 E-value=96 Score=25.27 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=48.7
Q ss_pred hHHHHHhcCCcEEEEcCCC-CCCCchHHHHhhCCcEEEEeee-CCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCC
Q 028983 74 NFSFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAI-EGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRG 151 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e-~~~~~~~~~~~~~gi~~~~ipi-~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG 151 (201)
...+|.++|++--+-+..- ...+...+++++.++..+++|- .|. .....+++.+.+.....|+|.+..|
T Consensus 31 Ga~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~---------TD~e~Al~~~~~~~~~~i~i~Ga~G 101 (208)
T cd07995 31 GANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDF---------TDFEKALKLALERGADEIVILGATG 101 (208)
T ss_pred HHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCC---------CHHHHHHHHHHHcCCCEEEEEccCC
Confidence 3566777776643333321 2333456677788999999998 332 3445678887765557899999888
Q ss_pred CChHHHH
Q 028983 152 KHRTGCL 158 (201)
Q Consensus 152 ~~RTG~v 158 (201)
. |-=-.
T Consensus 102 g-R~DH~ 107 (208)
T cd07995 102 G-RLDHT 107 (208)
T ss_pred C-cHHHH
Confidence 5 87533
No 141
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=38.91 E-value=96 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~ 168 (201)
.+.+.+.+..+ ..+.+|+|+|..|. ++..+ +..|...|.
T Consensus 36 ~~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~a-a~~L~~~G~ 74 (145)
T cd01535 36 RAQLAQALEKL--PAAERYVLTCGSSL-LARFA-AADLAALTV 74 (145)
T ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCh-HHHHH-HHHHHHcCC
Confidence 45555555554 25789999999863 55544 444444443
No 142
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.52 E-value=1.2e+02 Score=26.09 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEEEEcCCC---CC----C-C---chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CC
Q 028983 75 FSFLQTLRLRSIIYLCPE---PY----P-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NH 142 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e---~~----~-~---~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~ 142 (201)
+++.++.|++..+++... ++ + + ...+.+.+.|...+.+ .|+.- ..+...+.+.++.+.+.- +-
T Consensus 120 v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l--~DT~G---~~~P~~v~~lv~~l~~~~~~~ 194 (274)
T cd07938 120 AELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL--GDTIG---VATPAQVRRLLEAVLERFPDE 194 (274)
T ss_pred HHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE--CCCCC---ccCHHHHHHHHHHHHHHCCCC
Confidence 467788999998877742 11 1 1 1223445568776554 44311 123467777888876532 47
Q ss_pred cEEEEcCCC
Q 028983 143 PVLIHCKRG 151 (201)
Q Consensus 143 pVLVHC~aG 151 (201)
|+-+||+.-
T Consensus 195 ~i~~H~Hnd 203 (274)
T cd07938 195 KLALHFHDT 203 (274)
T ss_pred eEEEEECCC
Confidence 899998753
No 143
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=37.95 E-value=19 Score=26.31 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=9.1
Q ss_pred CCcEEEEcCCC
Q 028983 141 NHPVLIHCKRG 151 (201)
Q Consensus 141 ~~pVLVHC~aG 151 (201)
...+||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36799999877
No 144
>PRK09389 (R)-citramalate synthase; Provisional
Probab=37.44 E-value=2.5e+02 Score=26.39 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCC--c---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPE--A---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~--~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
++++++.|++..+++-.....+ . ..+.+.+.|...+.+|=.-.. .+...+.+.++.+.+..+-|+-+||+
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-----~~P~~~~~lv~~l~~~~~v~l~~H~H 194 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-----LTPEKTYELFKRLSELVKGPVSIHCH 194 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-----cCHHHHHHHHHHHHhhcCCeEEEEec
Confidence 3667788998877776432211 1 123334578887666533221 12466777777776544578999998
Q ss_pred CC
Q 028983 150 RG 151 (201)
Q Consensus 150 aG 151 (201)
.-
T Consensus 195 ND 196 (488)
T PRK09389 195 ND 196 (488)
T ss_pred CC
Confidence 53
No 145
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=36.86 E-value=46 Score=29.22 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHHHccCCCcE--EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhc
Q 028983 132 ALKVLLDVRNHPV--LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAA 182 (201)
Q Consensus 132 ~l~~l~~~~~~pV--LVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~ 182 (201)
+++.|.+..+.|+ ++++-+|. -||.++|+.+.. |++.+++.+-|.+...
T Consensus 17 vL~~le~~~g~~i~~~fD~i~GT-StGgiIA~~la~-g~s~~e~~~~y~~~~~ 67 (312)
T cd07212 17 MLIAIEKALGRPIRELFDWIAGT-STGGILALALLH-GKSLREARRLYLRMKD 67 (312)
T ss_pred HHHHHHHHhCCCchhhccEEEee-ChHHHHHHHHHc-CCCHHHHHHHHHHhhh
Confidence 3444433235565 58888897 566666666555 9999999999888743
No 146
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=36.86 E-value=3.1e+02 Score=24.48 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCC--c---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPE--A---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~--~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
+++.++.|++..+++-.....+ . ....+.+.|...+.++ |+.- ..+...+.+.++.+.+.-+-|+-+||+
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA--DTVG---ILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc--ccCC---CCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4666788988766654332111 1 2233445788776544 4311 123567777888876544578899987
Q ss_pred CC
Q 028983 150 RG 151 (201)
Q Consensus 150 aG 151 (201)
.-
T Consensus 194 Nd 195 (365)
T TIGR02660 194 ND 195 (365)
T ss_pred CC
Confidence 53
No 147
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=36.52 E-value=1.4e+02 Score=27.09 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=49.7
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCC--CC---CCCCCCHHHHHHHHHHHHc
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGH--KE---PFVNIPEDMIREALKVLLD 138 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~--~~---p~~~i~~~~i~~~l~~l~~ 138 (201)
+|.+...+..++++..++|+.+| ++.+...-....+.+....+ .+++-..+. .. ..+.++.+.+.++++.+.+
T Consensus 84 if~gp~K~~~~l~~a~~~Gv~~i-~vDS~~El~~i~~~~~~~~v-~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~ 161 (394)
T cd06831 84 IYTNPCKQASQIKYAAKVGVNIM-TCDNEIELKKIARNHPNAKL-LLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAKE 161 (394)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEE-EECCHHHHHHHHHhCCCCcE-EEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 67676777889999889999775 45543110111111111121 223333221 11 1235667778888887766
Q ss_pred cCCCcEEEEcCCCCCh
Q 028983 139 VRNHPVLIHCKRGKHR 154 (201)
Q Consensus 139 ~~~~pVLVHC~aG~~R 154 (201)
..-..+-+||+.|-.-
T Consensus 162 ~~l~~~Gih~HiGS~~ 177 (394)
T cd06831 162 LDVQIVGVKFHVSSSC 177 (394)
T ss_pred CCCeEEEEEEECCCCC
Confidence 4446688888887553
No 148
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=36.33 E-value=2.1e+02 Score=26.89 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=42.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-..... .+.+.+ +..+|+++...=+.. .......... ..+.|..+-|+.|-|
T Consensus 20 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~~hE~~--------A~~~Adgyar---~tg~~gv~~~t~GpG 87 (564)
T PRK08155 20 VRLLERQGIRIVTGIPGGAIL-PLYDALSQSTQIRHILARHEQG--------AGFIAQGMAR---TTGKPAVCMACSGPG 87 (564)
T ss_pred HHHHHHcCCCEEEeCCCcccH-HHHHHHhccCCceEEEeccHHH--------HHHHHHHHHH---HcCCCeEEEECCCCc
Confidence 588999999999999887332 222333 334788876332221 1122222222 134555555556666
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=+.++.+++-.
T Consensus 88 ~~N~l~gl~~A 98 (564)
T PRK08155 88 ATNLVTAIADA 98 (564)
T ss_pred HHHHHHHHHHH
Confidence 66555555544
No 149
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.32 E-value=56 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=16.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 028983 143 PVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 143 pVLVHC~aG~~RTG~vva~~l~ 164 (201)
.|++.|.+|.+-+-++..-+..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~ 23 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRK 23 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5899999999766555655554
No 150
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=36.04 E-value=44 Score=26.96 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQK 167 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g 167 (201)
+.+-|.|+|..|||.|...+++.++..|
T Consensus 2 ~~G~i~vytG~GKGKTTAAlGlalRA~G 29 (172)
T PF02572_consen 2 ERGLIQVYTGDGKGKTTAALGLALRAAG 29 (172)
T ss_dssp ----EEEEESSSS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHh
Confidence 3567899999999999988887777543
No 151
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=35.64 E-value=57 Score=19.74 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q 028983 157 CLVGCLRKLQKWCLSSVFDEYQR 179 (201)
Q Consensus 157 ~vva~~l~~~g~s~~~ai~ey~~ 179 (201)
-.+.-||...+|.++.|++.|-.
T Consensus 16 ~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 16 DVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 55677888999999999998864
No 152
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.14 E-value=2.6e+02 Score=24.82 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=42.2
Q ss_pred hHHHHHhcCCcEEEEcCCCC-CC-CchH---HHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC--CCcEEE
Q 028983 74 NFSFLQTLRLRSIIYLCPEP-YP-EANT---EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR--NHPVLI 146 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e~-~~-~~~~---~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~--~~pVLV 146 (201)
.+++.+++|..+.+++.... .+ +... +.+.+.|...+ -+.|..- .++.+.+.+.+..+.+.- .-|+-+
T Consensus 119 ~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i--~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~ 193 (333)
T TIGR03217 119 HIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV--YIVDSAG---AMLPDDVRDRVRALKAVLKPETQVGF 193 (333)
T ss_pred HHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE--EEccCCC---CCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 34667778888888776542 11 1112 23344566544 3444311 233577777888776532 368999
Q ss_pred EcCCCC
Q 028983 147 HCKRGK 152 (201)
Q Consensus 147 HC~aG~ 152 (201)
||+...
T Consensus 194 H~Hnnl 199 (333)
T TIGR03217 194 HAHHNL 199 (333)
T ss_pred EeCCCC
Confidence 998644
No 153
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=34.84 E-value=53 Score=28.69 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=16.3
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 028983 144 VLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 144 VLVHC~aG~~RTG~vva~~l~ 164 (201)
|-|=|++|++||-.++=.+..
T Consensus 246 IaIGCTGGqHRSV~iae~La~ 266 (286)
T COG1660 246 IAIGCTGGQHRSVYIAEQLAE 266 (286)
T ss_pred EEEccCCCccchHHHHHHHHH
Confidence 677899999999877654433
No 154
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.80 E-value=1.3e+02 Score=28.21 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCC-------chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPE-------ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~-------~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
++..++.|....++++-...+. .....+.+.|+..+. +.|..- -++...+.+.++.+.+.-+-||-+|
T Consensus 138 i~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~--IkDtaG---~l~P~~v~~Lv~alk~~~~~pi~~H 212 (468)
T PRK12581 138 LRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSIC--IKDMAG---ILTPKAAKELVSGIKAMTNLPLIVH 212 (468)
T ss_pred HHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEE--ECCCCC---CcCHHHHHHHHHHHHhccCCeEEEE
Confidence 3555666766555555421111 122233445665443 444311 1235677778887766446889999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028983 148 CKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 148 C~aG~~RTG~vva~~l~ 164 (201)
|+. ..|+.+|-++.
T Consensus 213 ~Hn---t~GlA~An~la 226 (468)
T PRK12581 213 THA---TSGISQMTYLA 226 (468)
T ss_pred eCC---CCccHHHHHHH
Confidence 874 44555555544
No 155
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=34.47 E-value=2e+02 Score=26.97 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHh-hCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLK-SNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~-~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-..... .+.+.+. ..+|+++...=+.. .......... ..++|..+-|+.|-|
T Consensus 8 ~~~L~~~Gv~~vFgvpG~~~~-~l~~~l~~~~~i~~i~~~hE~~--------A~~~Adgyar---~tg~~gv~~~t~GpG 75 (558)
T TIGR00118 8 IESLKDEGVKTVFGYPGGAIL-PIYDALYNDSGIEHILVRHEQG--------AAHAADGYAR---ASGKVGVVLVTSGPG 75 (558)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHhhccCCceEEEeCcHHH--------HHHHHHHHHH---HhCCCEEEEECCCCc
Confidence 478999999999999886322 2223333 46788876432211 1111111111 134566666666666
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=+-++.+++-.
T Consensus 76 ~~n~l~~i~~A 86 (558)
T TIGR00118 76 ATNLVTGIATA 86 (558)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 156
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=34.47 E-value=26 Score=26.47 Aligned_cols=51 Identities=16% Similarity=0.031 Sum_probs=32.6
Q ss_pred HHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHH
Q 028983 128 MIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQ 178 (201)
Q Consensus 128 ~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~ 178 (201)
...++.+.+.+..++||+|.-.++.++||.-++-.-....=.++++.++|.
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~ 58 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP 58 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC
Confidence 344455555554678999999999988886655444443334556655543
No 157
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=34.25 E-value=1.5e+02 Score=28.68 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=32.7
Q ss_pred HhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 102 LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 102 ~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
+...|...+. +.|..- .+....+.+.++.+.+.-+-|+-+||+. -+|+.+|-++.
T Consensus 164 l~~~Gad~i~--i~Dt~G---~l~P~~~~~lv~~lk~~~~~pi~~H~Hn---t~GlA~An~la 218 (593)
T PRK14040 164 LEDMGVDSLC--IKDMAG---LLKPYAAYELVSRIKKRVDVPLHLHCHA---TTGLSTATLLK 218 (593)
T ss_pred HHHcCCCEEE--ECCCCC---CcCHHHHHHHHHHHHHhcCCeEEEEECC---CCchHHHHHHH
Confidence 3445665443 444311 1234677778887766446899999984 55665665555
No 158
>PRK07413 hypothetical protein; Validated
Probab=34.17 E-value=53 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQ 166 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~ 166 (201)
.++-|.|||..|||.|....+.-++..
T Consensus 199 ~~g~i~VYTG~GKGKTTAAlGlAlRA~ 225 (382)
T PRK07413 199 SSGGIEIYTGEGKGKSTSALGKALQAI 225 (382)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHh
Confidence 367799999999999998888777754
No 159
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=34.04 E-value=45 Score=25.75 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHh--cCCcEEEEcCCCC-CC--CchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 75 FSFLQT--LRLRSIIYLCPEP-YP--EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 75 l~~L~~--lGIktII~Lr~e~-~~--~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
+..+.. .|+.++|++-.+- .. +-...+.+....+.+-+-+++-..| ..+.++++... ..+||++ ++
T Consensus 18 ~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~------~~f~~~~~~a~--~~KPVv~-lk 88 (138)
T PF13607_consen 18 LDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDG------RRFLEAARRAA--RRKPVVV-LK 88 (138)
T ss_dssp HHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-H------HHHHHHHHHHC--CCS-EEE-EE
T ss_pred HHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCH------HHHHHHHHHHh--cCCCEEE-Ee
Confidence 445554 6899999999872 11 1122333456777777777765443 33444555543 3499888 67
Q ss_pred CCCChHHH
Q 028983 150 RGKHRTGC 157 (201)
Q Consensus 150 aG~~RTG~ 157 (201)
.|..-.|.
T Consensus 89 ~Grt~~g~ 96 (138)
T PF13607_consen 89 AGRTEAGA 96 (138)
T ss_dssp --------
T ss_pred CCCchhhh
Confidence 77544443
No 160
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.73 E-value=35 Score=26.08 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcc---CCCcEEEEcCCCC
Q 028983 126 EDMIREALKVLLDV---RNHPVLIHCKRGK 152 (201)
Q Consensus 126 ~~~i~~~l~~l~~~---~~~pVLVHC~aG~ 152 (201)
++.|..+.+.|... ..+.++|||+...
T Consensus 78 DdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 78 DDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred hHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 45777777777653 4788999999754
No 161
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=33.71 E-value=82 Score=30.61 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=31.4
Q ss_pred HHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 100 ~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
..++..|.+|+ -|+++++ .+.+.++|+...+..++|++|||..=||+
T Consensus 240 ~~f~a~G~~~~-~~vdGhd-------~~~l~~al~~ak~~~~~P~~I~~~T~kGk 286 (641)
T PRK12571 240 TLFEELGFTYV-GPIDGHD-------MEALLSVLRAARARADGPVLVHVVTEKGR 286 (641)
T ss_pred hHHHHcCCEEE-CccCCCC-------HHHHHHHHHHHHhCCCCCEEEEEEecCcc
Confidence 45666777775 1455542 57788888876543578999998655544
No 162
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.41 E-value=2.7e+02 Score=24.73 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=43.8
Q ss_pred hHHHHHhcCCcEEEEcCCCC-CC-Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC--CCcEEE
Q 028983 74 NFSFLQTLRLRSIIYLCPEP-YP-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR--NHPVLI 146 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e~-~~-~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~--~~pVLV 146 (201)
-+++.+++|.+..+++.... ++ +. ..+.+.+.|...+ -+.|..- .+..+.+.+.++.+.+.- +-|+-+
T Consensus 120 ~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i--~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~ 194 (337)
T PRK08195 120 HIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV--YVVDSAG---ALLPEDVRDRVRALRAALKPDTQVGF 194 (337)
T ss_pred HHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE--EeCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 34667788888888887542 11 11 2233345676654 3444321 233577888888876532 578999
Q ss_pred EcCCCC
Q 028983 147 HCKRGK 152 (201)
Q Consensus 147 HC~aG~ 152 (201)
||+...
T Consensus 195 H~Hnnl 200 (337)
T PRK08195 195 HGHNNL 200 (337)
T ss_pred EeCCCc
Confidence 987543
No 163
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=33.27 E-value=1.6e+02 Score=24.12 Aligned_cols=71 Identities=7% Similarity=0.011 Sum_probs=37.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRGK 152 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG~ 152 (201)
...|.+.|.+.|+.-+..+.........+..|.+...++++-. ..+.+.++++.+.+.-+ --++|||.+..
T Consensus 27 a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 27 AKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVT-------DEDGVQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 3667788998766654432111112223333444443443321 14677778877655322 24899998754
No 164
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=33.26 E-value=2.3e+02 Score=22.01 Aligned_cols=77 Identities=9% Similarity=0.053 Sum_probs=41.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhh-CCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~-~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-...... +.+.+.+ .+|+++...=+.. ..........+ . +|-.+=|+.|-|
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~~-l~~al~~~~~i~~i~~rhE~~--------A~~mA~gyar~---t-~~gv~~~t~GpG 70 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNLP-LLDAIEENPGLRWVGNCNELN--------AGYAADGYARV---K-GLGALVTTYGVG 70 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHHH-HHHHHhhcCCceEEeeCCHHH--------HHHHHHHHHHh---h-CCEEEEEcCCcc
Confidence 4678999999999998874322 2233333 3788875332211 11122222221 2 354444555666
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=|-++.+++-.
T Consensus 71 ~~n~~~gl~~A 81 (162)
T cd07038 71 ELSALNGIAGA 81 (162)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 165
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.18 E-value=3.4e+02 Score=24.28 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEEEEcCCCC-CC-Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 75 FSFLQTLRLRSIIYLCPEP-YP-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~-~~-~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
+++.++.|++..+++-... .+ +. ..+.+.+.|...+.++ |+.- .++...+.+.++.+.+.-+-|+-+||+
T Consensus 118 i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~--DT~G---~~~P~~v~~li~~l~~~~~~~l~~H~H 192 (363)
T TIGR02090 118 VEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA--DTVG---VLTPQKMEELIKKLKENVKLPISVHCH 192 (363)
T ss_pred HHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe--CCCC---ccCHHHHHHHHHHHhcccCceEEEEec
Confidence 3567789998877774331 11 11 2223445677765544 4311 123577888888887644577889987
Q ss_pred CCC
Q 028983 150 RGK 152 (201)
Q Consensus 150 aG~ 152 (201)
.-.
T Consensus 193 nd~ 195 (363)
T TIGR02090 193 NDF 195 (363)
T ss_pred CCC
Confidence 533
No 166
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.95 E-value=2.7e+02 Score=22.59 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=36.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.++..+..+ ...+.++..++.++...+.+ .+.+.++++.+.+.-+ --++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~~~~~---~~~~~l~~~~~~~~~~Dl~~---------~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 24 AEAFLREGAKVAVLYNSAE---NEAKELREKGVFTIKCDVGN---------RDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHCCCEEEEEeCCcH---HHHHHHHhCCCeEEEecCCC---------HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4667788987766544331 11122233355555443433 4677778877765322 2489999765
No 167
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=32.78 E-value=2.3e+02 Score=26.58 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=43.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhh-CCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~-~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-..... .+.+.+.+ .+|+++...=+.. .......... ..++|..+-|+.|-|
T Consensus 15 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~rhE~~--------A~~~Adgyar---~tg~~gv~~~t~GpG 82 (557)
T PRK08199 15 VDALRANGVERVFCVPGESYL-AVLDALHDETDIRVIVCRQEGG--------AAMMAEAYGK---LTGRPGICFVTRGPG 82 (557)
T ss_pred HHHHHHcCCCEEEeCCCcchh-HHHHHhhccCCCcEEEeccHHH--------HHHHHHHHHH---hcCCCEEEEeCCCcc
Confidence 488999999999999876322 22333333 3588875332221 1111111111 235566666666776
Q ss_pred hHHHHHHHHHHH
Q 028983 154 RTGCLVGCLRKL 165 (201)
Q Consensus 154 RTG~vva~~l~~ 165 (201)
=+-++.+++-.+
T Consensus 83 ~~N~~~gi~~A~ 94 (557)
T PRK08199 83 ATNASIGVHTAF 94 (557)
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
No 168
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.60 E-value=2.6e+02 Score=26.32 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=25.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ip 113 (201)
++.|+++||++|+-+-.......+....+..+|+++...
T Consensus 10 ~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~r 48 (563)
T PRK08527 10 CEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTR 48 (563)
T ss_pred HHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEec
Confidence 478999999999999876332222222233478887543
No 169
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=32.55 E-value=1.2e+02 Score=27.03 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=29.5
Q ss_pred hHHHHHhcCCcEEEEcCCCC----------CCCchHHHHhhCC-cEEEEeeeCCC
Q 028983 74 NFSFLQTLRLRSIIYLCPEP----------YPEANTEFLKSNG-IKLFQFAIEGH 117 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e~----------~~~~~~~~~~~~g-i~~~~ipi~d~ 117 (201)
-++.|.+.|+|.|+-....- ......+.+.+.| .+|.++|....
T Consensus 248 ~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~ 302 (320)
T COG0276 248 LLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLND 302 (320)
T ss_pred HHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCC
Confidence 45777777899888887641 1113455666666 88998888764
No 170
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=32.52 E-value=1.5e+02 Score=23.90 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=35.2
Q ss_pred hcCCcEEEEcCCCCCC---CchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCC
Q 028983 80 TLRLRSIIYLCPEPYP---EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 80 ~lGIktII~Lr~e~~~---~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
..++..||+-..-... ......++..|..+.. +++.+ ..+.+.++++...+ .++|++|||..=|
T Consensus 125 ~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~-~vdG~-------d~~~l~~a~~~a~~-~~~P~~I~~~T~k 191 (195)
T cd02007 125 KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIG-PVDGH-------NIEALIKVLKEVKD-LKGPVLLHVVTKK 191 (195)
T ss_pred CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccc-eECCC-------CHHHHHHHHHHHHh-CCCCEEEEEEEec
Confidence 4556556655543111 1234455556665554 33332 24677777776554 5789998875443
No 171
>PRK08862 short chain dehydrogenase; Provisional
Probab=32.48 E-value=1.5e+02 Score=24.08 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC--CcEEEEcCCC
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN--HPVLIHCKRG 151 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~--~pVLVHC~aG 151 (201)
..|.+.|.+.++.=|.....+...+..+..|.+.+.+.++.. ..+.+.++++.+...-+ =-++|||.++
T Consensus 23 ~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 23 CHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDF-------SQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCC-------CHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 556778998766544432111112223333444444444332 14678878877755322 3489999864
No 172
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=32.44 E-value=35 Score=29.85 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChHHHHHHHH
Q 028983 143 PVLIHCKRGKHRTGCLVGCL 162 (201)
Q Consensus 143 pVLVHC~aG~~RTG~vva~~ 162 (201)
-|-|=|++|++||-+++=.+
T Consensus 244 tIaiGCTGG~HRSV~iae~L 263 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAERL 263 (284)
T ss_pred EEEEEcCCCcCcHHHHHHHH
Confidence 36777999999998776443
No 173
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=32.33 E-value=2.5e+02 Score=26.47 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=45.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-..... .+.+.+.+.+++++.. .. +. ........... ..++|..+-|+.|-|=
T Consensus 23 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~i~~--~h--E~----~A~~~A~gyar---~tg~~gv~~~t~GPG~ 90 (571)
T PRK07710 23 IEALEKEGVEVIFGYPGGAVL-PLYDALYDCGIPHILT--RH--EQ----GAIHAAEGYAR---ISGKPGVVIATSGPGA 90 (571)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEe--CC--HH----HHHHHHHHHHH---HhCCCeEEEECCCccH
Confidence 588999999999999887332 2333444568888743 11 10 01122222222 2356666667777777
Q ss_pred HHHHHHHHHH
Q 028983 155 TGCLVGCLRK 164 (201)
Q Consensus 155 TG~vva~~l~ 164 (201)
+-.+.+++-.
T Consensus 91 ~N~~~gl~~A 100 (571)
T PRK07710 91 TNVVTGLADA 100 (571)
T ss_pred HHHHHHHHHH
Confidence 7666666554
No 174
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=32.32 E-value=3e+02 Score=26.24 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=43.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
.+.|+++||++|+-+-...... +.+.+ +..+|+++...=+.. .......... ..+.|-.+-|+.|-|
T Consensus 38 ~~~L~~~GV~~vFgipG~~~~~-l~dal~~~~~i~~v~~rhE~~--------A~~~Adgyar---~tg~~gv~~~t~GPG 105 (612)
T PRK07789 38 VRSLEELGVDVVFGIPGGAILP-VYDPLFDSTKVRHVLVRHEQG--------AGHAAEGYAQ---ATGRVGVCMATSGPG 105 (612)
T ss_pred HHHHHHCCCCEEEEcCCcchHH-HHHHHhccCCceEEEeccHHH--------HHHHHHHHHH---HhCCCEEEEECCCcc
Confidence 5889999999999998863322 22333 334788886432211 1111112211 234555555666666
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=+.++.+++-.
T Consensus 106 ~~N~l~gl~~A 116 (612)
T PRK07789 106 ATNLVTPIADA 116 (612)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 175
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.70 E-value=1.8e+02 Score=23.37 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=36.3
Q ss_pred HHHHHhcCCcEEEE-cCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIY-LCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~-Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.|+. .|..+......+..+..+-++..++.+-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 21 a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 21 ALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVG-------DVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 46677889887664 34332111112223333444444443321 14677777777654322 2389999764
No 176
>PRK05867 short chain dehydrogenase; Provisional
Probab=31.62 E-value=1.6e+02 Score=23.83 Aligned_cols=70 Identities=7% Similarity=-0.084 Sum_probs=36.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.|+.-|..+..+...+.++..+-+...+.++-. ..+.+.++++.+.+.- .=-++|||.+.
T Consensus 26 a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 26 ALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVS-------QHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4667788998777655432111112222233333333333221 1467777777765432 23489999754
No 177
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=31.54 E-value=2e+02 Score=20.80 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc----cCCCcEEEEcCCCCChHHH
Q 028983 82 RLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD----VRNHPVLIHCKRGKHRTGC 157 (201)
Q Consensus 82 GIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~----~~~~pVLVHC~aG~~RTG~ 157 (201)
|-+.|.++.... ...+.++++|++++..|+.+ ..|.+.+..... ...+-+++. ....++-|+
T Consensus 20 ~~~vv~~v~sS~---~~~~~~~~~g~~~~~t~vG~----------~~i~~~~~~~~~~~ggE~sgg~~~~-~~~~~~Dgi 85 (113)
T PF02880_consen 20 GGTVVVTVVSSR---ALDKIAEKHGGKVIRTKVGF----------KNIAEKMREENAVFGGEESGGFIFP-DFSYDKDGI 85 (113)
T ss_dssp TEEEEEETTS-T---HHHHHHHHTTSEEEEESSSH----------HHHHHHHHHTTESEEEETTSEEEET-TTESSE-HH
T ss_pred CCEEEEeCHHHH---HHHHHHHHCCCEEEEecCCc----------HHHHHHHhhhceeEEecccCeEEec-CCCCCCcHH
Confidence 335677777642 45678889999999988864 344444444221 223555555 444568888
Q ss_pred HHHHHHH----HCCCCHHHHHHHHH
Q 028983 158 LVGCLRK----LQKWCLSSVFDEYQ 178 (201)
Q Consensus 158 vva~~l~----~~g~s~~~ai~ey~ 178 (201)
++++++. ..|.++.++++++-
T Consensus 86 ~a~~~~l~~l~~~~~~ls~ll~~l~ 110 (113)
T PF02880_consen 86 YAALLLLELLAEEGKTLSELLDELP 110 (113)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 8887765 36999999997653
No 178
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.39 E-value=2.5e+02 Score=26.63 Aligned_cols=78 Identities=12% Similarity=-0.033 Sum_probs=42.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-...... +.+.+ +..+|+++...=+.. .......... ..++|-.+-|+.|-|
T Consensus 28 ~~~L~~~GV~~vFgvpG~~~~~-l~dal~~~~~i~~i~~rhE~~--------A~~~AdgYar---~tg~~gv~~~t~GpG 95 (587)
T PRK06965 28 MKALAAEGVEFIWGYPGGAVLY-IYDELYKQDKIQHVLVRHEQA--------AVHAADGYAR---ATGKVGVALVTSGPG 95 (587)
T ss_pred HHHHHHcCCCEEEecCCcchHH-HHHHHhhcCCCeEEEeCCHHH--------HHHHHHHHHH---HhCCCeEEEECCCcc
Confidence 4889999999999998874322 22333 335788875432211 1111111111 134555555566666
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=+.++.+++-.
T Consensus 96 ~~N~l~gl~~A 106 (587)
T PRK06965 96 VTNAVTGIATA 106 (587)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 179
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=31.20 E-value=1.4e+02 Score=25.59 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=34.7
Q ss_pred ChhhHHHHHhcCCcEEEEcCCCCCCC---------------chHHHHhhCCcEE-EEeeeCCCCCC
Q 028983 71 DSANFSFLQTLRLRSIIYLCPEPYPE---------------ANTEFLKSNGIKL-FQFAIEGHKEP 120 (201)
Q Consensus 71 ~~~~l~~L~~lGIktII~Lr~e~~~~---------------~~~~~~~~~gi~~-~~ipi~d~~~p 120 (201)
.-++++.++..||++||.+..++++. .+...+++.|++. +-+.+-....|
T Consensus 13 ~~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP 78 (254)
T COG1099 13 GFEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIP 78 (254)
T ss_pred cHHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCC
Confidence 34688999999999999999886542 1344566788874 45555554444
No 180
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=31.07 E-value=1.5e+02 Score=22.53 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=29.4
Q ss_pred chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEc
Q 028983 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHC 148 (201)
Q Consensus 97 ~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC 148 (201)
++...++..|+.+..+.-.+ .+.+.++++... ..++|.+|++
T Consensus 112 d~~~~a~a~G~~~~~v~~~~---------~~el~~al~~a~-~~~gp~vIeV 153 (153)
T PF02775_consen 112 DFAALAEAFGIKGARVTTPD---------PEELEEALREAL-ESGGPAVIEV 153 (153)
T ss_dssp GHHHHHHHTTSEEEEESCHS---------HHHHHHHHHHHH-HSSSEEEEEE
T ss_pred CHHHHHHHcCCcEEEEccCC---------HHHHHHHHHHHH-hCCCcEEEEc
Confidence 45677788899866432211 377788888876 4789999985
No 181
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.92 E-value=2.2e+02 Score=23.02 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHcc-CCCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~-~~~pVLVHC~aG 151 (201)
...|.+.|.+.++.-|.++..+...+..+..+-+...+..+-. ..+.+.++++.+... ..--++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 24 ALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT-------NEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 4667788998766655442111112222333433332322211 145666677665432 223489999864
No 182
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.64 E-value=45 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH---HCCCC
Q 028983 141 NHPVLIHCKRGKHRTGCLVGCLRK---LQKWC 169 (201)
Q Consensus 141 ~~pVLVHC~aG~~RTG~vva~~l~---~~g~s 169 (201)
...||+-|.+|.+ |++++--... .+|++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHHCCCc
Confidence 3569999999987 7776654443 24664
No 183
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=30.58 E-value=1.1e+02 Score=24.46 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=34.6
Q ss_pred hhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc--cCCCcEEEEcC
Q 028983 72 SANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPVLIHCK 149 (201)
Q Consensus 72 ~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~--~~~~pVLVHC~ 149 (201)
..+...|++.| ..|+-|.+. .+......++ .++... +.+ .+.+. .+..... ....+|++..-
T Consensus 55 ~~Ea~~lr~~g-~~il~l~~~-~~~~~~~~~~-~~~~~~---v~s---------~~~~~-~l~~~~~~~~~~~~v~l~vd 118 (218)
T PF01168_consen 55 LEEAEELREAG-APILVLGPI-PPEELEELVE-YNIIPT---VDS---------LEQLE-ALSKAAKKQGKPLKVHLKVD 118 (218)
T ss_dssp HHHHHHHHHTT-SEEEEESES-TGGGHHHHHH-TTEEEE---E-S---------HHHHH-HHHHHHHHHTSTEEEEEEBE
T ss_pred HHHhhhHHhcC-CceEEEcCC-ChhhHHHHhh-CcEEEE---Ech---------hhHHH-HHHHHHHHcCCceEEEEeec
Confidence 34556677777 777777762 2222333333 233321 221 34444 3333222 24556777777
Q ss_pred CCCChHH
Q 028983 150 RGKHRTG 156 (201)
Q Consensus 150 aG~~RTG 156 (201)
.|.+|+|
T Consensus 119 tG~~R~G 125 (218)
T PF01168_consen 119 TGMGRLG 125 (218)
T ss_dssp SSSSSSS
T ss_pred ccccccC
Confidence 7777776
No 184
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.54 E-value=2.1e+02 Score=26.96 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=24.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhh-CCcEEEEe
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQF 112 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~-~gi~~~~i 112 (201)
++.|+++||++|+-+-..... .+.+.+.+ .+|+++..
T Consensus 11 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~ 48 (574)
T PRK06882 11 VQSLRDEGVEYVFGYPGGSVL-DIYDAIHTLGGIEHVLV 48 (574)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHhhcCCCeEEEe
Confidence 478999999999998876322 22233333 47888764
No 185
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=30.47 E-value=67 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.||+++|.+|. |+.. ++.++...|++
T Consensus 342 ~d~~iVvyC~~G~-rS~~-aa~~L~~~G~~ 369 (392)
T PRK07878 342 QDRTIVLYCKTGV-RSAE-ALAALKKAGFS 369 (392)
T ss_pred CCCcEEEEcCCCh-HHHH-HHHHHHHcCCC
Confidence 5789999999985 7644 44555556664
No 186
>PRK06182 short chain dehydrogenase; Validated
Probab=30.46 E-value=2.7e+02 Score=22.87 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=37.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCC-cEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~-pVLVHC~aG 151 (201)
...|.+.|.+.++.-|..+ ...+ ....++.++..-+.+ .+.+.++++.+.+..++ -++|||.+.
T Consensus 20 a~~l~~~G~~V~~~~r~~~---~l~~-~~~~~~~~~~~Dv~~---------~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 20 ARRLAAQGYTVYGAARRVD---KMED-LASLGVHPLSLDVTD---------EASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHCCCEEEEEeCCHH---HHHH-HHhCCCeEEEeeCCC---------HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3556778987766655431 1122 223467766554443 46777777776553333 489999754
No 187
>PLN02790 transketolase
Probab=30.27 E-value=88 Score=30.44 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=33.1
Q ss_pred hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 98 NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 98 ~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
..+.++..|+.++.+ .+.. ...+.+.++++...+..++|++|||..-+++
T Consensus 192 ~~~~f~a~G~~~~~v--dgg~-----hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~ 241 (654)
T PLN02790 192 VDKRYEALGWHTIWV--KNGN-----TDYDEIRAAIKEAKAVTDKPTLIKVTTTIGY 241 (654)
T ss_pred HHHHHHHcCCeEEEE--CCCC-----CCHHHHHHHHHHHHhcCCCeEEEEEEEeecC
Confidence 455677788888863 3310 1257788888876543579999999665444
No 188
>PRK10318 hypothetical protein; Provisional
Probab=30.02 E-value=59 Score=24.88 Aligned_cols=29 Identities=7% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcc---CCCcEEEEcCCCCChHH
Q 028983 128 MIREALKVLLDV---RNHPVLIHCKRGKHRTG 156 (201)
Q Consensus 128 ~i~~~l~~l~~~---~~~pVLVHC~aG~~RTG 156 (201)
...+|++.+..+ .++|..|+|..|..++.
T Consensus 72 taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S 103 (121)
T PRK10318 72 TAEQFIDKVASSSSISGKPYIVKCPGKSDENA 103 (121)
T ss_pred cHHHHHHHHhhhcccCCCCeEEEcCCCCcccH
Confidence 445566666553 59999999999986553
No 189
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=29.93 E-value=3.9e+02 Score=25.02 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=46.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-..... .+.+.+.+.+|+++...=+.. .......... ..++|..+-|+.|-|=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~v~~~hE~~--------A~~~Adgyar---~sg~~gv~~~t~GpG~ 75 (548)
T PRK08978 8 VHALRAQGVDTVFGYPGGAIM-PVYDALYDGGVEHLLCRHEQG--------AAMAAIGYAR---ATGKVGVCIATSGPGA 75 (548)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCeEEEeccHHH--------HHHHHHHHHH---HhCCCEEEEECCCCcH
Confidence 478999999999999987332 233334456888875322110 1122222222 2456766667777777
Q ss_pred HHHHHHHHHHH
Q 028983 155 TGCLVGCLRKL 165 (201)
Q Consensus 155 TG~vva~~l~~ 165 (201)
+-++.+++-.+
T Consensus 76 ~n~~~~l~~A~ 86 (548)
T PRK08978 76 TNLITGLADAL 86 (548)
T ss_pred HHHHHHHHHHh
Confidence 77777766654
No 190
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.90 E-value=85 Score=28.14 Aligned_cols=25 Identities=32% Similarity=0.698 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCChH---HHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRT---GCLVGCLRK 164 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RT---G~vva~~l~ 164 (201)
.+..||-||.+|.-+| |++.+.++.
T Consensus 147 ~g~~ILThc~sg~lat~~~gTal~~l~~ 174 (339)
T PRK06036 147 DGDTVLTHCNAGRLACVDWGTALGVIRS 174 (339)
T ss_pred CCCEEEEecCCccccccccchHHHHHHH
Confidence 4567999999998776 355555554
No 191
>PTZ00089 transketolase; Provisional
Probab=29.73 E-value=1.1e+02 Score=29.92 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=31.2
Q ss_pred chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCC
Q 028983 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 97 ~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
...+.++..|.+++. +..++.. .+.+.++++......++|++|||..-+
T Consensus 202 ~~~~~f~a~G~~~i~-v~dG~~D------~~~l~~a~~~a~~~~~~P~~I~~~T~k 250 (661)
T PTZ00089 202 DVEKKYEAYGWHVIE-VDNGNTD------FDGLRKAIEEAKKSKGKPKLIIVKTTI 250 (661)
T ss_pred cHHHHHHhcCCcEEE-eCCCCCC------HHHHHHHHHHHHhcCCCcEEEEEEeee
Confidence 345667778888876 2233201 467777887765434799999986433
No 192
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.71 E-value=92 Score=28.94 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHH--CCCC
Q 028983 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKL--QKWC 169 (201)
Q Consensus 127 ~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~--~g~s 169 (201)
...-+.++.+...-+-||.+||++ -||+..++|++. .|.+
T Consensus 185 ~~ayelVk~iK~~~~~pv~lHtH~---TsG~a~m~ylkAvEAGvD 226 (472)
T COG5016 185 YEAYELVKAIKKELPVPVELHTHA---TSGMAEMTYLKAVEAGVD 226 (472)
T ss_pred HHHHHHHHHHHHhcCCeeEEeccc---ccchHHHHHHHHHHhCcc
Confidence 344445666655557999999986 678888999984 4766
No 193
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=29.66 E-value=76 Score=27.64 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHHHH
Q 028983 144 VLIHCKRGKHRTGCLVGC 161 (201)
Q Consensus 144 VLVHC~aG~~RTG~vva~ 161 (201)
|-|=|++|++||-+++=.
T Consensus 248 i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 248 IAIGCTGGQHRSVAIAER 265 (288)
T ss_pred EEEecCCCcccHHHHHHH
Confidence 677799999999766543
No 194
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.43 E-value=1.8e+02 Score=24.86 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=41.7
Q ss_pred HHHHHhcCCcEEEEcCCC---CCC-C---chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 75 FSFLQTLRLRSIIYLCPE---PYP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e---~~~-~---~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
+++.++.|++..+++... ..+ + ...+.+.+.|...+.+. |+.- .++...+.+.++.+...-+-|+-+|
T Consensus 124 i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 124 IKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK--DMAG---LLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCC---CCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 366677888777766421 111 1 12233445677765543 4211 1235778888888765444789999
Q ss_pred cCCCC
Q 028983 148 CKRGK 152 (201)
Q Consensus 148 C~aG~ 152 (201)
|+.-.
T Consensus 199 ~Hnd~ 203 (275)
T cd07937 199 THDTS 203 (275)
T ss_pred ecCCC
Confidence 87544
No 195
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.12 E-value=2.1e+02 Score=26.29 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=46.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE-cC---CC
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH-CK---RG 151 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH-C~---aG 151 (201)
++|+..+-+.-|-+..+..+ .....++..|++....|..|...-. +..+.+...|+.+ ..+--||.| |- .|
T Consensus 112 ~fl~~~~~~~~vwis~PtW~-NH~~If~~aGl~v~~Y~Yyd~~~~~--~df~~mla~L~~a--~~~~vvLLH~CcHNPTG 186 (396)
T COG1448 112 DFLARFFPDATVWISDPTWP-NHKAIFEAAGLEVETYPYYDAETKG--LDFDGMLADLKTA--PEGSVVLLHGCCHNPTG 186 (396)
T ss_pred HHHHHhCCCceEEeCCCCcH-hHHHHHHhcCCceeeeecccccccc--ccHHHHHHHHHhC--CCCCEEEEecCCCCCCC
Confidence 66777766666666655332 3467888899999999988754332 2233333344332 357789999 43 35
Q ss_pred CChHH
Q 028983 152 KHRTG 156 (201)
Q Consensus 152 ~~RTG 156 (201)
.|=|-
T Consensus 187 ~D~t~ 191 (396)
T COG1448 187 IDPTE 191 (396)
T ss_pred CCCCH
Confidence 55553
No 196
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=28.41 E-value=2.8e+02 Score=24.71 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=45.8
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCc-EEEEeeeCCC------C------CCCCCCCHHHHH
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGI-KLFQFAIEGH------K------EPFVNIPEDMIR 130 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi-~~~~ipi~d~------~------~p~~~i~~~~i~ 130 (201)
+|.+......++++..++|+ ++++.+.+.-....+.++..+. .-+++.+... + .....++.+.+.
T Consensus 97 ~~~gp~k~~~~l~~a~~~gv--~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~~ 174 (398)
T TIGR03099 97 SFAGPGKTDAELRRALAAGV--LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVP 174 (398)
T ss_pred EEeCCCCCHHHHHHHHhCCC--EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCCCCCcCCCCHHHHH
Confidence 44444456677888878888 4555554211122334433332 1244444321 1 011245566777
Q ss_pred HHHHHHHccCCCcEEEEcCCCCC
Q 028983 131 EALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 131 ~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++++.+.+..-..+-+||..|-+
T Consensus 175 ~~~~~~~~~~l~l~Glh~h~gs~ 197 (398)
T TIGR03099 175 AALAFIKAADLDFQGFHIFAGSQ 197 (398)
T ss_pred HHHHHHHhCCCeEEEEEeccccc
Confidence 78877765322345678887755
No 197
>PRK07064 hypothetical protein; Provisional
Probab=28.32 E-value=3e+02 Score=25.62 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=40.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.|+++||++|+-+-..... .+.+.+ +..+|+++...=+.. .......... ..++|-.+-|+.|-|
T Consensus 10 ~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~~i~~i~~~hE~~--------A~~~A~gyar---~tg~~~v~~~t~GpG 77 (544)
T PRK07064 10 AAFLEQCGVKTAFGVISIHNM-PILDAIGRRGKIRFVPARGEAG--------AVNMADAHAR---VSGGLGVALTSTGTG 77 (544)
T ss_pred HHHHHHcCCCEEEeCCCCcch-HHHHHHhccCCccEEeeccHHH--------HHHHHHHHHH---hcCCCeEEEeCCCCc
Confidence 478999999999988775222 223333 334788875332210 1111212111 134454444555666
Q ss_pred hHHHHHHHHHH
Q 028983 154 RTGCLVGCLRK 164 (201)
Q Consensus 154 RTG~vva~~l~ 164 (201)
=+-++.+++-.
T Consensus 78 ~~N~~~~i~~A 88 (544)
T PRK07064 78 AGNAAGALVEA 88 (544)
T ss_pred HHHHHHHHHHH
Confidence 66655555444
No 198
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=28.26 E-value=1.3e+02 Score=24.69 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHccC---CCcEEEEcCCCCChHHHHHHHHHH
Q 028983 128 MIREALKVLLDVR---NHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 128 ~i~~~l~~l~~~~---~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
....+.+.+.+.. ..|+++|...|.|.|=++-|+...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3334555555432 358999999999999988887654
No 199
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=28.17 E-value=2.5e+02 Score=22.54 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=35.4
Q ss_pred HHHHHhcCCcEEEEcCCC-CCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCc-EEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHP-VLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e-~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~p-VLVHC~aG 151 (201)
...|.+.|.+.|+..+.. +.........+..+-+...++++-. ..+.+.++++.+.+.-+.+ ++|||.+.
T Consensus 19 a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 19 AVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA-------NEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccC-------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 356677898877765433 1111111222223333333443321 1466777777765432223 89999864
No 200
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=28.15 E-value=1.4e+02 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028983 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (201)
Q Consensus 126 ~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~~~g~s 169 (201)
.+.+.+.+..+--.++.+|+|.|..|...++ -++..+...|..
T Consensus 88 ~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~-r~~~~L~~~G~~ 130 (320)
T PLN02723 88 EEAFAAAVSALGIENKDGVVVYDGKGIFSAA-RVWWMFRVFGHE 130 (320)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCcchHH-HHHHHHHHcCCC
Confidence 4667777776532356799999988854333 333344455554
No 201
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=28.06 E-value=2.6e+02 Score=20.99 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=46.3
Q ss_pred hHHHHHhc-CCcEEEEcCCC-CCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCC
Q 028983 74 NFSFLQTL-RLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRG 151 (201)
Q Consensus 74 ~l~~L~~l-GIktII~Lr~e-~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG 151 (201)
....|.++ |+.--+-+..- ...+...+++++.|...++.|-.|. .....+++.+.+....+|+|-+..|
T Consensus 25 Ga~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~---------TD~e~Al~~~~~~~~~~i~v~Ga~G 95 (123)
T PF04263_consen 25 GANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDY---------TDLEKALEYAIEQGPDEIIVLGALG 95 (123)
T ss_dssp HHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS----------HHHHHHHHHHHTTTSEEEEES-SS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccccccc---------CHHHHHHHHHHHCCCCEEEEEecCC
Confidence 35666777 76653333321 2333556788889999999993332 3556688887766677899888888
Q ss_pred CChHHHHHH
Q 028983 152 KHRTGCLVG 160 (201)
Q Consensus 152 ~~RTG~vva 160 (201)
+|-=-..+
T Consensus 96 -gR~DH~la 103 (123)
T PF04263_consen 96 -GRFDHTLA 103 (123)
T ss_dssp -SSHHHHHH
T ss_pred -CcHHHHHH
Confidence 48753333
No 202
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=28.05 E-value=54 Score=25.80 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=16.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 028983 144 VLIHCKRGKHRTGCLVGCLRKL 165 (201)
Q Consensus 144 VLVHC~aG~~RTG~vva~~l~~ 165 (201)
|..||..|.+.|-+.+|+.+-.
T Consensus 2 iIY~c~gg~hsSvvAAaiHlg~ 23 (148)
T PF11385_consen 2 IIYHCYGGAHSSVVAAAIHLGL 23 (148)
T ss_pred EEEEeCCChhHHHHHHHHHhCC
Confidence 7889999997766666665554
No 203
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.95 E-value=2e+02 Score=22.59 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=37.7
Q ss_pred HHHHHhcCCcEEEEcCCC-C-CCC--chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcE--EEEc
Q 028983 75 FSFLQTLRLRSIIYLCPE-P-YPE--ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPV--LIHC 148 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e-~-~~~--~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pV--LVHC 148 (201)
..+|.+.|-++||-+... . ... ......+..|.+...+.++-. ..+.+.++++.+.. ..+|| +|||
T Consensus 17 a~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~-------d~~~v~~~~~~~~~-~~~~i~gVih~ 88 (181)
T PF08659_consen 17 ARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVT-------DPEAVAAALAQLRQ-RFGPIDGVIHA 88 (181)
T ss_dssp HHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TT-------SHHHHHHHHHTSHT-TSS-EEEEEE-
T ss_pred HHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCcc-------CHHHHHHHHHHHHh-ccCCcceeeee
Confidence 467888888887777665 1 111 123344566777666665432 15788888887754 44787 9999
Q ss_pred CCC
Q 028983 149 KRG 151 (201)
Q Consensus 149 ~aG 151 (201)
..-
T Consensus 89 ag~ 91 (181)
T PF08659_consen 89 AGV 91 (181)
T ss_dssp ---
T ss_pred eee
Confidence 653
No 204
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=27.79 E-value=76 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKL 165 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~ 165 (201)
..+-|.|+|..|+|.|.+.++.-+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH
Confidence 46889999999999999888766654
No 205
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=27.76 E-value=1.8e+02 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcc-CCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 127 DMIREALKVLLDV-RNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 127 ~~i~~~l~~l~~~-~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
+.+.++++.+... .+..++++...|.|-|.+++++...
T Consensus 10 ~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~ 48 (184)
T PF04851_consen 10 EAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE 48 (184)
T ss_dssp HHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc
Confidence 3455555555432 3677899999999999988864443
No 206
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=27.75 E-value=1.8e+02 Score=27.95 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=42.9
Q ss_pred HHHHHhcCCcEEEEcCCC--CCC--Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 75 FSFLQTLRLRSIIYLCPE--PYP--EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e--~~~--~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
++..++.|....++++.. ++. +. ....+.+.|...+. +.|+.- .++...+.+.++.+.+.-+-|+-+|
T Consensus 124 i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~--i~Dt~G---~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 124 IQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSIC--IKDMAG---ILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE--ECCCCC---CcCHHHHHHHHHHHHHhCCCceEEE
Confidence 355666777666554422 111 11 12233445665543 444311 1234677778887766445889999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028983 148 CKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 148 C~aG~~RTG~vva~~l~ 164 (201)
|+. -+|+.+|-++.
T Consensus 199 ~Hn---t~Gla~An~la 212 (582)
T TIGR01108 199 SHA---TTGMAEMALLK 212 (582)
T ss_pred ecC---CCCcHHHHHHH
Confidence 874 34444444443
No 207
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=27.73 E-value=3.3e+02 Score=24.22 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=60.1
Q ss_pred eEecCCCChhh---HHHHHhcCCcE-EEEcCCC-CCCCc-hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHH
Q 028983 64 IFRSGFPDSAN---FSFLQTLRLRS-IIYLCPE-PYPEA-NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL 137 (201)
Q Consensus 64 Lyrsg~p~~~~---l~~L~~lGIkt-II~Lr~e-~~~~~-~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~ 137 (201)
|..+|...... -+.|++.||+. |||+-.- |.+.. ....+++.|.- +-++.+.- ...+-.++..++
T Consensus 197 iiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~I---vT~EeHsi------~GGlGsaVAEvl 267 (312)
T COG3958 197 IIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGRI---VTAEEHSI------IGGLGSAVAEVL 267 (312)
T ss_pred EEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcE---EEEeccee------ecchhHHHHHHH
Confidence 44455444433 37799999998 9998875 33322 23344444322 12233210 122333444444
Q ss_pred ccCCCcEEEEc---CCCCChHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 028983 138 DVRNHPVLIHC---KRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (201)
Q Consensus 138 ~~~~~pVLVHC---~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~ 180 (201)
. .++|+-++= ....+|||.. .-++.+.|++.+.+.+..+..
T Consensus 268 s-e~~p~~~~riGvp~~fg~sg~~-~~Ll~~ygl~~~~I~~~v~~~ 311 (312)
T COG3958 268 S-ENGPTPMRRIGVPDTFGRSGKA-DELLDYYGLDPESIAARVLEL 311 (312)
T ss_pred H-hcCCcceEEecCCchhccccch-HHHHHHhCCCHHHHHHHHHhh
Confidence 3 456666552 3556788876 555668899999999877653
No 208
>PLN02470 acetolactate synthase
Probab=27.41 E-value=3.8e+02 Score=25.41 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEe
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQF 112 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~i 112 (201)
++.|+++||++|+-+-......-...+.+..+|+++..
T Consensus 20 ~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~ 57 (585)
T PLN02470 20 VEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLC 57 (585)
T ss_pred HHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEe
Confidence 48899999999999998743222222223347888754
No 209
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=27.33 E-value=2e+02 Score=23.34 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.|+--|..+..+.........+.+...++++-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 29 a~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~-------d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 29 AEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVA-------DEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3556678987655444321111111222233333333333221 1467777777765532 23489999764
No 210
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=26.75 E-value=2.7e+02 Score=24.32 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=44.6
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCCC-----------C-CCCCCCHHHHH
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHK-----------E-PFVNIPEDMIR 130 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~~-----------~-p~~~i~~~~i~ 130 (201)
+|.+...+..+++.+.++|+ .++++.+.+.-+...+.+++.|.. -+.+.+.... . .-..++.+.+.
T Consensus 73 v~~gp~~~~~~l~~~~~~~~-~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~ 151 (368)
T cd06810 73 IFTGPAKSVSEIEAALASGV-DHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEAR 151 (368)
T ss_pred EEcCCCCCHHHHHHHHHCCC-CEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHH
Confidence 45554456678888888885 344454432111233344333321 2344443211 0 11245566777
Q ss_pred HHHHHHHccCCCcEEEEcCCCC
Q 028983 131 EALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 131 ~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
++++.+....-..+-+||+.|-
T Consensus 152 ~~~~~~~~~~l~l~Gl~~H~gs 173 (368)
T cd06810 152 AALERAKELDLRLVGLHFHVGS 173 (368)
T ss_pred HHHHHHHhCCCcEEEEEEcCCc
Confidence 7777765433344567776664
No 211
>PLN02591 tryptophan synthase
Probab=26.40 E-value=2.6e+02 Score=23.79 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=39.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHh-hCCcEEE-E-eeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCC
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLK-SNGIKLF-Q-FAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~-~~gi~~~-~-ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
+.++++|+..|..+.+....+..+..++ ..|+-|+ . .++.+.... + .+.+.+.++.+.+..+-||++ ..|.
T Consensus 125 ~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~---~-~~~~~~~i~~vk~~~~~Pv~v--GFGI 198 (250)
T PLN02591 125 AEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARAS---V-SGRVESLLQELKEVTDKPVAV--GFGI 198 (250)
T ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcC---C-chhHHHHHHHHHhcCCCceEE--eCCC
Confidence 4456778888887766533323333333 3466664 1 333332211 1 355677777776655777774 7777
Q ss_pred C
Q 028983 153 H 153 (201)
Q Consensus 153 ~ 153 (201)
.
T Consensus 199 ~ 199 (250)
T PLN02591 199 S 199 (250)
T ss_pred C
Confidence 3
No 212
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.32 E-value=1.8e+02 Score=26.64 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=42.0
Q ss_pred HHHHhcC-CcEEEEcCCCCCC-CchHHHHhhCCcEE--EEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCC
Q 028983 76 SFLQTLR-LRSIIYLCPEPYP-EANTEFLKSNGIKL--FQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRG 151 (201)
Q Consensus 76 ~~L~~lG-IktII~Lr~e~~~-~~~~~~~~~~gi~~--~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG 151 (201)
..+++.+ +..+|..+..-++ +-...+++..++.. +.+-+.+.+...-.++...+..+=+++.+..+--|||| |
T Consensus 24 ~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVh---G 100 (383)
T COG0381 24 KALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVH---G 100 (383)
T ss_pred HHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEe---C
Confidence 5566665 9999999988554 22344555667764 22222221221111122333333333333456679999 5
Q ss_pred CChHHHHHH
Q 028983 152 KHRTGCLVG 160 (201)
Q Consensus 152 ~~RTG~vva 160 (201)
|++.++++
T Consensus 101 -DT~t~lA~ 108 (383)
T COG0381 101 -DTNTTLAG 108 (383)
T ss_pred -CcchHHHH
Confidence 57665553
No 213
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=26.22 E-value=2.3e+02 Score=24.21 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=42.4
Q ss_pred HHHHhcCCcEEEEcCCCC-CC-C---chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCC
Q 028983 76 SFLQTLRLRSIIYLCPEP-YP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~-~~-~---~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~a 150 (201)
.+.++.|++..+++..-. .+ + ...+.+...|...+. +.|+.- -.+..++.+.++.+...-+-|+-+||+.
T Consensus 119 ~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G---~~~P~~v~~~~~~~~~~~~~~i~~H~Hn 193 (262)
T cd07948 119 EFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVG--IADTVG---IATPRQVYELVRTLRGVVSCDIEFHGHN 193 (262)
T ss_pred HHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEE--ECCcCC---CCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 555788999888885321 11 1 122344456777544 444311 1235678888888766445788888875
Q ss_pred CC
Q 028983 151 GK 152 (201)
Q Consensus 151 G~ 152 (201)
-.
T Consensus 194 ~~ 195 (262)
T cd07948 194 DT 195 (262)
T ss_pred CC
Confidence 33
No 214
>PRK12937 short chain dehydrogenase; Provisional
Probab=26.15 E-value=2.7e+02 Score=22.16 Aligned_cols=70 Identities=6% Similarity=-0.027 Sum_probs=37.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-CchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~-~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.++..+..+.. ....+.+...+-+...++++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 22 a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 22 ARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVA-------DAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 366778899887776654210 1111222233434433343221 14677777777655322 2389999754
No 215
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=26.08 E-value=2.8e+02 Score=23.84 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=42.0
Q ss_pred HHHHHhcCCcEEEEcCCC--CCC---Cc---hHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHcc-CCCcEE
Q 028983 75 FSFLQTLRLRSIIYLCPE--PYP---EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVL 145 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e--~~~---~~---~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~-~~~pVL 145 (201)
+++.++.|++..+++..- ++. +. ....+.+.|+..+. +.|+.- ..+..++.+.++.+... .+-|+-
T Consensus 121 i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~--l~DT~G---~~~P~~v~~l~~~l~~~~~~~~i~ 195 (280)
T cd07945 121 IEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIM--LPDTLG---ILSPFETYTYISDMVKRYPNLHFD 195 (280)
T ss_pred HHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEE--ecCCCC---CCCHHHHHHHHHHHHhhCCCCeEE
Confidence 356678899988888741 111 11 22334456887655 444311 12246777788877653 246788
Q ss_pred EEcCCC
Q 028983 146 IHCKRG 151 (201)
Q Consensus 146 VHC~aG 151 (201)
+||+.-
T Consensus 196 ~H~Hnd 201 (280)
T cd07945 196 FHAHND 201 (280)
T ss_pred EEeCCC
Confidence 998753
No 216
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.99 E-value=3e+02 Score=26.29 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=26.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ip 113 (201)
+..|+++||++|+-+-..... .+.+.+ +..+|+++...
T Consensus 18 ~~~L~~~GV~~vFGvpG~~~~-~l~dal~~~~~i~~I~~r 56 (595)
T PRK09107 18 VQALKDQGVEHIFGYPGGAVL-PIYDEIFQQDDIQHILVR 56 (595)
T ss_pred HHHHHHCCCCEEEEccCcchH-HHHHHHhhcCCCeEEEEC
Confidence 488999999999999887332 222333 33589988643
No 217
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=25.92 E-value=2.1e+02 Score=25.09 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=25.9
Q ss_pred hHHHHHhcCCcEEEEcCCCCC----------CCchHHHHhhCCcE-EEEeeeCCC
Q 028983 74 NFSFLQTLRLRSIIYLCPEPY----------PEANTEFLKSNGIK-LFQFAIEGH 117 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e~~----------~~~~~~~~~~~gi~-~~~ipi~d~ 117 (201)
-++.|.+.|++.|+-+...-. ....++.+++.|++ |..+|....
T Consensus 251 ~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~ 305 (322)
T TIGR00109 251 LLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNA 305 (322)
T ss_pred HHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCC
Confidence 356677778877777665311 11223556667776 666776543
No 218
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=25.85 E-value=1.9e+02 Score=27.45 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=34.1
Q ss_pred hHHHHhhCCc---EEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHH
Q 028983 98 NTEFLKSNGI---KLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGC 157 (201)
Q Consensus 98 ~~~~~~~~gi---~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~ 157 (201)
....+...|+ +...+|+.+.. .+..+.+++.++........|+.|-+.+|..-||.
T Consensus 222 ~~kaa~~lglg~~~v~~vp~d~~g----~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGa 280 (522)
T TIGR03799 222 LGKAADVLGIGRDNLIAIKTDANN----RIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGN 280 (522)
T ss_pred HHHHHHHcCCCcccEEEEEeCCCC----cCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCC
Confidence 3445555677 67788886543 34467777777665444456776655666545553
No 219
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=25.75 E-value=2.3e+02 Score=25.14 Aligned_cols=87 Identities=11% Similarity=0.157 Sum_probs=44.7
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCC-----------CCCCCCCCHHHHHHH
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGH-----------KEPFVNIPEDMIREA 132 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~-----------~~p~~~i~~~~i~~~ 132 (201)
+|-+...+.+++.+..+.|+. | ++.+...-....+......+ .+++-.... ....+.++.+.+.++
T Consensus 85 if~gp~K~~~~l~~a~~~gv~-i-~~Ds~~El~~i~~~~~~~~v-~lRi~~~~~~~~~~~~~~~~~~skFG~~~~~~~~~ 161 (368)
T cd06840 85 LFTPNFAARSEYEQALELGVN-V-TVDNLHPLREWPELFRGREV-ILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEA 161 (368)
T ss_pred EEcCCCCCHHHHHHHHHCCCE-E-EECCHHHHHHHHHhcccCCE-EEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHH
Confidence 565555667789998899994 3 66543100111111111111 122222110 012235667788888
Q ss_pred HHHHHccCCCcEEEEcCCCCC
Q 028983 133 LKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 133 l~~l~~~~~~pVLVHC~aG~~ 153 (201)
++.+....-.-+-+||+.|-+
T Consensus 162 l~~~~~~~l~l~GlhfH~GS~ 182 (368)
T cd06840 162 RDLAKKAGIIVIGLHAHSGSG 182 (368)
T ss_pred HHHHHhCCCcEEEEEEECCCC
Confidence 877765333566777777753
No 220
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.74 E-value=2.3e+02 Score=27.43 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=43.6
Q ss_pred HHHHHhcCCcEEEEcC--CCCCCC-----chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 75 FSFLQTLRLRSIIYLC--PEPYPE-----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr--~e~~~~-----~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
++..++.|.....+++ ..+... ...+.+.+.|+..+ -|.|..- -++...+.+.++.+.+.-+-||-+|
T Consensus 129 i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I--~IkDtaG---~l~P~~v~~lv~alk~~~~ipi~~H 203 (596)
T PRK14042 129 IDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSI--AIKDMAG---LLTPTVTVELYAGLKQATGLPVHLH 203 (596)
T ss_pred HHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE--EeCCccc---CCCHHHHHHHHHHHHhhcCCEEEEE
Confidence 4556667766655533 222111 12223344676544 3444311 1234677778887766446889999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028983 148 CKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 148 C~aG~~RTG~vva~~l~ 164 (201)
|+. -.|+.++.++.
T Consensus 204 ~Hn---t~Gla~an~la 217 (596)
T PRK14042 204 SHS---TSGLASICHYE 217 (596)
T ss_pred eCC---CCCcHHHHHHH
Confidence 875 33444444443
No 221
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.71 E-value=2.2e+02 Score=23.26 Aligned_cols=70 Identities=9% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
.+.|.+.|.+.|+--|..+..+......+..+.++..++++-. ..+.+.++++.+...- .--++|||.+.
T Consensus 27 a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 27 ALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLA-------HPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4667778996665555431111111122222333333333221 1467777777765422 23489999753
No 222
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=25.54 E-value=2.6e+02 Score=24.76 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=46.0
Q ss_pred HHHHHhcCCcEEEEcC--CCC------C--CCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcE
Q 028983 75 FSFLQTLRLRSIIYLC--PEP------Y--PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPV 144 (201)
Q Consensus 75 l~~L~~lGIktII~Lr--~e~------~--~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pV 144 (201)
...++..|.+.+..=+ +.+ . ...+.+++++..+-.+|+|+.+..... ++.+ .|.. .+.+.+
T Consensus 158 a~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~--i~~~----~~a~---MK~gai 228 (324)
T COG0111 158 AKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL--INAE----ELAK---MKPGAI 228 (324)
T ss_pred HHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcc--cCHH----HHhh---CCCCeE
Confidence 3678899999987766 221 1 134677888899999999998864321 1222 2222 356779
Q ss_pred EEEcCCCC
Q 028983 145 LIHCKRGK 152 (201)
Q Consensus 145 LVHC~aG~ 152 (201)
+|+|+.|.
T Consensus 229 lIN~aRG~ 236 (324)
T COG0111 229 LINAARGG 236 (324)
T ss_pred EEECCCcc
Confidence 99999875
No 223
>PRK07478 short chain dehydrogenase; Provisional
Probab=25.49 E-value=2.4e+02 Score=22.81 Aligned_cols=70 Identities=4% Similarity=0.003 Sum_probs=36.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.|+--|.++..+...+..+..+.+...++.+-. ..+.+.++++.+.+.-+ =-++|||.+.
T Consensus 23 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 23 AKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVR-------DEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4667788997666545432111112222333434444443221 14677777777655322 2389999764
No 224
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=25.33 E-value=93 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 028983 142 HPVLIHCKRGKHRTGCLVGCLRKL 165 (201)
Q Consensus 142 ~pVLVHC~aG~~RTG~vva~~l~~ 165 (201)
+-|.|+|..|+|.|.+.++.-+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999998877765553
No 225
>PRK08322 acetolactate synthase; Reviewed
Probab=25.32 E-value=3.5e+02 Score=25.25 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=44.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-..... .+.+.+.+.+|+++...=+.. .......... ..++|..+-|+.|-|=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~dal~~~~i~~i~~~hE~~--------A~~~A~gyar---~tg~~gv~~~t~GpG~ 75 (547)
T PRK08322 8 VKCLENEGVEYIFGIPGEENL-DLLEALRDSSIKLILTRHEQG--------AAFMAATYGR---LTGKAGVCLSTLGPGA 75 (547)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEeccHHH--------HHHHHHHHHH---hhCCCEEEEECCCccH
Confidence 478999999999998876322 223334556788875332211 1112212211 2355666666667777
Q ss_pred HHHHHHHHHH
Q 028983 155 TGCLVGCLRK 164 (201)
Q Consensus 155 TG~vva~~l~ 164 (201)
+-++.++.-.
T Consensus 76 ~N~~~~i~~A 85 (547)
T PRK08322 76 TNLVTGVAYA 85 (547)
T ss_pred hHHHHHHHHH
Confidence 7666666554
No 226
>PRK08643 acetoin reductase; Validated
Probab=25.25 E-value=3e+02 Score=22.22 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=34.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.++--|..+............+-+..-++.+- . ..+.+.++++.+...- +=-++|||.+.
T Consensus 19 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-~------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 19 AKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADV-S------DRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC-C------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 356777898766554543211111222222233332222221 1 1466777777765432 22479999854
No 227
>PLN02150 terpene synthase/cyclase family protein
Probab=25.15 E-value=58 Score=23.59 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCCchhhhhHh
Q 028983 155 TGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRGTR 194 (201)
Q Consensus 155 TG~vva~~l~~~g~s~~~ai~ey~~~~~~~~~~~~~~Fie 194 (201)
.+.-+-||++..|.|.++|.++++..-...=+..|+.+++
T Consensus 6 vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~ 45 (96)
T PLN02150 6 VANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLT 45 (96)
T ss_pred chHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455689999899999999998887743211345666655
No 228
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=24.82 E-value=3.7e+02 Score=25.94 Aligned_cols=66 Identities=20% Similarity=0.418 Sum_probs=38.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhC-CcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSN-GIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~-gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
++.|..+|++.|+ +++..-+.++.=.+..+ +|+. |+-++.+.+. .+ ++-.. ...+.||.|=|++|.
T Consensus 15 ~eeL~r~GV~~vv-icPGSRSTPLala~~~~~~i~~-hv~~DERsag-------Ff--ALGlA-Kas~rPVavi~TSGT 81 (566)
T COG1165 15 LEELARLGVRDVV-ICPGSRSTPLALAAAAHDAITV-HVHIDERSAG-------FF--ALGLA-KASKRPVAVICTSGT 81 (566)
T ss_pred HHHHHHcCCcEEE-ECCCCCCcHHHHHHHhcCCeEE-EEecccchHH-------HH--HHhhh-hhcCCCEEEEEcCcc
Confidence 5788999999975 55543333443334444 4543 4455544322 22 23322 236899999999986
No 229
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.60 E-value=2.6e+02 Score=27.00 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHhcCCcEEEEcCCC--CCCC-----chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEE
Q 028983 75 FSFLQTLRLRSIIYLCPE--PYPE-----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e--~~~~-----~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVH 147 (201)
++..++.|.....+++-. +... .....+.+.|+..+. +.|+.- .+....+.+.++.+.+.-+-|+-+|
T Consensus 129 i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~--i~Dt~G---~~~P~~~~~lv~~lk~~~~~pi~~H 203 (592)
T PRK09282 129 IKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSIC--IKDMAG---LLTPYAAYELVKALKEEVDLPVQLH 203 (592)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE--ECCcCC---CcCHHHHHHHHHHHHHhCCCeEEEE
Confidence 355566777666555421 2111 112233445666543 444311 1234677778888766445889999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028983 148 CKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 148 C~aG~~RTG~vva~~l~ 164 (201)
|+. -+|+.+|-++.
T Consensus 204 ~Hn---t~Gla~An~la 217 (592)
T PRK09282 204 SHC---TSGLAPMTYLK 217 (592)
T ss_pred EcC---CCCcHHHHHHH
Confidence 874 44544554444
No 230
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=24.44 E-value=2.8e+02 Score=22.42 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG~ 152 (201)
...|.+.|.+.++.-|.++......+..+..|.+...++.+-. ..+.+.++++.+.+.- .--++|||.+..
T Consensus 27 a~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 27 AEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVT-------DHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3556778987665444431111112223333544444444321 1467777777765432 233899997653
No 231
>PRK05993 short chain dehydrogenase; Provisional
Probab=24.44 E-value=3.6e+02 Score=22.30 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC--CcEEEEcCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN--HPVLIHCKR 150 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~--~pVLVHC~a 150 (201)
...|.+.|.+.|+.-|..+ . .+.+...++.++..-+.+ .+.+.++++.+.+... --++|||.+
T Consensus 21 a~~l~~~G~~Vi~~~r~~~---~-~~~l~~~~~~~~~~Dl~d---------~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 21 ARALQSDGWRVFATCRKEE---D-VAALEAEGLEAFQLDYAE---------PESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHHHCCCEEEEEECCHH---H-HHHHHHCCceEEEccCCC---------HHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 3567778988766655432 1 122334567666544433 4667777777654322 248999863
No 232
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=24.43 E-value=2.1e+02 Score=25.86 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=44.2
Q ss_pred hhHHHHHhcCCc--EEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCC
Q 028983 73 ANFSFLQTLRLR--SIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (201)
Q Consensus 73 ~~l~~L~~lGIk--tII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~a 150 (201)
++--.|++.|++ .|+-|..-..++.. +.+.++++... +. +.+++..+.+.......-+|.++=-.
T Consensus 64 ~EAi~LR~~gi~~~~IlvL~g~~~~~~~-~~~~~~~l~~~---v~---------s~~ql~~l~~~~~~~~~l~vhLkiDT 130 (360)
T COG0787 64 EEAIELREAGITGAPILVLEGFFPAEEL-ELAAAYNLTPV---VN---------SLEQLEALKNAALKNKPLKVHLKIDT 130 (360)
T ss_pred HHHHHHHHcCCCCCCEEEEcCcCChhhH-HHHHHcCCeEE---EC---------CHHHHHHHHHhhhhcCceEEEEEECC
Confidence 344668899999 48888754222222 45566666543 11 25777755554433233557777889
Q ss_pred CCChHHHH
Q 028983 151 GKHRTGCL 158 (201)
Q Consensus 151 G~~RTG~v 158 (201)
|.+|-|+-
T Consensus 131 GM~RlG~~ 138 (360)
T COG0787 131 GMNRLGLR 138 (360)
T ss_pred CCCcCCCC
Confidence 99998754
No 233
>PLN02439 arginine decarboxylase
Probab=24.34 E-value=3.7e+02 Score=25.82 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=48.5
Q ss_pred eEecCC-CChhhHHH--H-HhcCCcEEEEcCCCCCCCchHHHHhhCCcE-E--EEe--eeCCC--------CCCCCCCCH
Q 028983 64 IFRSGF-PDSANFSF--L-QTLRLRSIIYLCPEPYPEANTEFLKSNGIK-L--FQF--AIEGH--------KEPFVNIPE 126 (201)
Q Consensus 64 Lyrsg~-p~~~~l~~--L-~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~--~~i--pi~d~--------~~p~~~i~~ 126 (201)
++.++. -+.+.++. + .++|++.+|++-....-+...+.++..|++ - +.+ ...+. ....+.++.
T Consensus 85 ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~~ 164 (559)
T PLN02439 85 FLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTA 164 (559)
T ss_pred EEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCCCCH
Confidence 444444 33333442 2 367899888886642112233444444432 1 122 21211 122346777
Q ss_pred HHHHHHHHHHHccCCC--cEEEEcCCCCC
Q 028983 127 DMIREALKVLLDVRNH--PVLIHCKRGKH 153 (201)
Q Consensus 127 ~~i~~~l~~l~~~~~~--pVLVHC~aG~~ 153 (201)
+++.++++.+.+...- -+++||+-|..
T Consensus 165 ~ei~~~i~~lk~~~~l~~L~GLHfHiGSQ 193 (559)
T PLN02439 165 TEIVRVVRKLRKEGMLDCLQLLHFHIGSQ 193 (559)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEeCCCC
Confidence 8888888887664333 48999998866
No 234
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=24.32 E-value=95 Score=27.84 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=43.6
Q ss_pred EEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCChHHH
Q 028983 85 SIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGC 157 (201)
Q Consensus 85 tII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~ 157 (201)
-+|....+ -.-.....+.-.|+....||+.... .+..+.+++.++........|++|.+++|---||.
T Consensus 142 ~~i~~s~~-aH~S~~Kaa~~lGlg~~~I~~~~~~----~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga 209 (373)
T PF00282_consen 142 PVIYVSEQ-AHYSIEKAARILGLGVRKIPTDEDG----RMDIEALEKALEKDIANGKTPFAVVATAGTTNTGA 209 (373)
T ss_dssp EEEEEETT-S-THHHHHHHHTTSEEEEE-BBTTS----SB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSB
T ss_pred cccccccc-cccHHHHhcceeeeEEEEecCCcch----hhhHHHhhhhhcccccccccceeeeccCCCccccc
Confidence 34444433 2334566777789999999998743 34567888888776554456888999999866664
No 235
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=24.15 E-value=4.6e+02 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ip 113 (201)
++.|+++||++|+-+-...... +.+.+ +..+|+++...
T Consensus 17 ~~~L~~~Gv~~vFgipG~~~~~-l~dal~~~~~i~~i~~r 55 (566)
T PRK07282 17 LETLRDLGVDTIFGYPGGAVLP-LYDAIYNFEGIRHILAR 55 (566)
T ss_pred HHHHHHcCCCEEEecCCcchHH-HHHHHhhcCCceEEEec
Confidence 5889999999999998873322 22333 33578887533
No 236
>PRK08617 acetolactate synthase; Reviewed
Probab=24.11 E-value=3.7e+02 Score=25.19 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=26.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ip 113 (201)
++.|+++||++|+-+-..... .+.+.+...+|+++...
T Consensus 12 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~i~~i~~~ 49 (552)
T PRK08617 12 VDSLINQGVKYVFGIPGAKID-RVFDALEDSGPELIVTR 49 (552)
T ss_pred HHHHHHcCCCEEEeCCCccHH-HHHHHHhhCCCCEEEec
Confidence 478999999999999987332 22333445688887644
No 237
>PRK00915 2-isopropylmalate synthase; Validated
Probab=24.03 E-value=6.1e+02 Score=23.87 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCC-----chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC----CcEE
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPE-----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN----HPVL 145 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~-----~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~----~pVL 145 (201)
+++++++|++..+++-.....+ .....+.+.|...+.++=.-. ..+...+.+.++.+.+.-+ -|+-
T Consensus 126 v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG-----~~~P~~~~~~i~~l~~~~~~~~~v~l~ 200 (513)
T PRK00915 126 VKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVG-----YTTPEEFGELIKTLRERVPNIDKAIIS 200 (513)
T ss_pred HHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCC-----CCCHHHHHHHHHHHHHhCCCcccceEE
Confidence 4677889999877765332111 122334556887766553221 1224667777777754322 6899
Q ss_pred EEcCCCC
Q 028983 146 IHCKRGK 152 (201)
Q Consensus 146 VHC~aG~ 152 (201)
+||+.-.
T Consensus 201 ~H~HND~ 207 (513)
T PRK00915 201 VHCHNDL 207 (513)
T ss_pred EEecCCC
Confidence 9998643
No 238
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=24.01 E-value=67 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=29.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHhc
Q 028983 145 LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAA 182 (201)
Q Consensus 145 LVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~~ 182 (201)
+++.-+|. -||.++|+.+...+++.+++++.|.....
T Consensus 42 ~fDli~GT-StGgiiA~~l~~~~~t~~e~~~~y~~~~~ 78 (309)
T cd07216 42 YFDLIGGT-STGGLIAIMLGRLRMTVDECIDAYTRLAK 78 (309)
T ss_pred hcCeeeec-cHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 47888886 67888888777789999999999987643
No 239
>PLN02449 ferrochelatase
Probab=23.71 E-value=1.2e+02 Score=28.53 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=33.4
Q ss_pred hhHHHHHhcCCcEEEEcCCCCC----------CCchHHHHhhCCc-EEEEeeeCCCC
Q 028983 73 ANFSFLQTLRLRSIIYLCPEPY----------PEANTEFLKSNGI-KLFQFAIEGHK 118 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e~~----------~~~~~~~~~~~gi-~~~~ipi~d~~ 118 (201)
+-++.|.+.|+|.|+-....-. +...++.+++.|+ .|..+|.....
T Consensus 342 d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~ 398 (485)
T PLN02449 342 ETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCE 398 (485)
T ss_pred HHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCC
Confidence 3568888999999888776411 2235677888999 58889987653
No 240
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.63 E-value=3.2e+02 Score=25.82 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=25.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEe
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQF 112 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~i 112 (201)
++.|+++|+++|+-+-......-+..+.+..+|+++..
T Consensus 11 ~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~ 48 (574)
T PRK06466 11 VRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILV 48 (574)
T ss_pred HHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEe
Confidence 57899999999999988733222222223357888764
No 241
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.44 E-value=2.5e+02 Score=22.36 Aligned_cols=69 Identities=6% Similarity=-0.066 Sum_probs=34.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCC--cEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHcc-CCCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNG--IKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~g--i~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~-~~~pVLVHC~aG 151 (201)
...|.+.|.+.++--+.++......+..+..+ +.++...+.+ .+.+.++++.+.+. ..--++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---------~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 24 AEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD---------PASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---------HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35677789876554333211111112222223 3333322222 46777777766543 223489999865
Q ss_pred C
Q 028983 152 K 152 (201)
Q Consensus 152 ~ 152 (201)
.
T Consensus 95 ~ 95 (250)
T PRK12939 95 T 95 (250)
T ss_pred C
Confidence 3
No 242
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.37 E-value=3.6e+02 Score=22.01 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=35.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.++--|..... ....++.++...+.+ .+.+.++++.+.+..+ --++|||.+.
T Consensus 21 a~~l~~~g~~V~~~~r~~~~~------~~~~~~~~~~~D~~d---------~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 21 AEKLARAGYRVFGTSRNPARA------APIPGVELLELDVTD---------DASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred HHHHHHCCCEEEEEeCChhhc------cccCCCeeEEeecCC---------HHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 355677898855544432110 012356666554433 4677778877654322 3489999764
No 243
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=23.37 E-value=5.3e+02 Score=22.91 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=43.1
Q ss_pred EecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHc----cC
Q 028983 65 FRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD----VR 140 (201)
Q Consensus 65 yrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~----~~ 140 (201)
.+|-+..+.++..+-.-.=..|||.|.. |.-. |= | +.+--.|. .+.++++..++.+ ..
T Consensus 110 ~vG~yl~p~~wn~~l~D~~~vviDtRN~-YE~~---------iG--~--F~gAv~p~----~~tFrefP~~v~~~~~~~~ 171 (308)
T COG1054 110 NVGTYLSPKDWNELLSDPDVVVIDTRND-YEVA---------IG--H--FEGAVEPD----IETFREFPAWVEENLDLLK 171 (308)
T ss_pred cccCccCHHHHHHHhcCCCeEEEEcCcc-eeEe---------ee--e--ecCccCCC----hhhhhhhHHHHHHHHHhcc
Confidence 3455556667744433333678888876 2101 00 1 11111221 3455555555432 35
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028983 141 NHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (201)
Q Consensus 141 ~~pVLVHC~aG~~RTG~vva~~l~~~g~ 168 (201)
+++|.+.|++|. |---.. .||+..|.
T Consensus 172 ~KkVvmyCTGGI-RCEKas-~~m~~~GF 197 (308)
T COG1054 172 DKKVVMYCTGGI-RCEKAS-AWMKENGF 197 (308)
T ss_pred CCcEEEEcCCce-eehhhH-HHHHHhcc
Confidence 779999999998 744333 34444454
No 244
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.18 E-value=3.1e+02 Score=21.81 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG~ 152 (201)
...|.+.|.+.|+--|.........+..+..+-+...++.+-. ..+.+.++++.+.+.. +=-++|||.+..
T Consensus 24 ~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 24 AIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS-------DYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 3567788986655545432111111222333433333333321 1467777777765422 234899997654
No 245
>PRK07413 hypothetical protein; Validated
Probab=23.11 E-value=1.1e+02 Score=27.96 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHC
Q 028983 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQ 166 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RTG~vva~~l~~~ 166 (201)
..+-|.|+|..|||.|.+..+.-++..
T Consensus 18 ~~Gli~VytG~GKGKTTAAlGlalRA~ 44 (382)
T PRK07413 18 SKGQLHVYDGEGKGKSQAALGVVLRTI 44 (382)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 457899999999999998888776653
No 246
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.84 E-value=3e+02 Score=23.82 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHHHHhcCCcEEEEcCCC---CCC-----C---chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CC
Q 028983 75 FSFLQTLRLRSIIYLCPE---PYP-----E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NH 142 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e---~~~-----~---~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~ 142 (201)
+++.++.|++...++... ++. + ...+.+.+.|+..+. +.|..- ..+..++.+.++.+.+.- +-
T Consensus 126 v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~--l~DT~G---~~~P~~v~~lv~~l~~~~~~~ 200 (287)
T PRK05692 126 AEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEIS--LGDTIG---VGTPGQVRAVLEAVLAEFPAE 200 (287)
T ss_pred HHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEE--eccccC---ccCHHHHHHHHHHHHHhCCCC
Confidence 355678899887666531 111 1 123344467887655 444311 123467777888876532 35
Q ss_pred cEEEEcCCCC
Q 028983 143 PVLIHCKRGK 152 (201)
Q Consensus 143 pVLVHC~aG~ 152 (201)
|+-+||+.-.
T Consensus 201 ~i~~H~Hn~~ 210 (287)
T PRK05692 201 RLAGHFHDTY 210 (287)
T ss_pred eEEEEecCCC
Confidence 8899987533
No 247
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=22.78 E-value=98 Score=26.71 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=34.5
Q ss_pred HHHHHHccCCCcE--EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 028983 132 ALKVLLDVRNHPV--LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFA 181 (201)
Q Consensus 132 ~l~~l~~~~~~pV--LVHC~aG~~RTG~vva~~l~~~g~s~~~ai~ey~~~~ 181 (201)
+|+.|.+.-+.|+ +++.-+|. -||.++|+++...|++.+++.+-|....
T Consensus 26 vL~~Le~~~~~~i~~~fDli~GT-StGgiiA~~la~~~~~~~e~~~~y~~~~ 76 (308)
T cd07211 26 ILRKIEKLTGKPIHELFDYICGV-STGAILAFLLGLKKMSLDECEELYRKLG 76 (308)
T ss_pred HHHHHHHHhCCCchhhcCEEEec-ChhHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4444433234554 46777785 6788888888777999999999887663
No 248
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=22.56 E-value=4.1e+02 Score=24.97 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ip 113 (201)
++.|+++||++|+-+-......-.....+..+|+++...
T Consensus 16 ~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~ 54 (568)
T PRK07449 16 LEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHF 54 (568)
T ss_pred HHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeec
Confidence 478999999999999887332122222233578887533
No 249
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=22.53 E-value=3.8e+02 Score=21.36 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEEcCCCC-CCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEP-YPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~-~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.++..+..+ ..+...+..+..+.+..-++++-. ..+.+.++++.+.+.-+ =-++|||.+.
T Consensus 23 a~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 23 TVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVS-------KVEDANRLVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3567778988776544321 111111223333434333333221 14677777777665322 2389999654
No 250
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=22.44 E-value=3.4e+02 Score=21.74 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=35.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.|+--+...............+.++..++.+-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 17 a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 17 AERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVS-------DKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3556778987655444321111111223334444433333221 1467777777765432 23489999864
No 251
>PRK07524 hypothetical protein; Provisional
Probab=22.36 E-value=5.1e+02 Score=24.10 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=42.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-..... .+.+.+.+.+|+++...=+.. .......... ..+.|-.+-|+.|-|=
T Consensus 9 ~~~L~~~Gv~~vFg~pG~~~~-~~~dal~~~~i~~i~~~hE~~--------A~~mAdgyar---~tg~~gv~~~t~GpG~ 76 (535)
T PRK07524 9 VRLLEAYGVETVFGIPGVHTV-ELYRGLAGSGIRHVTPRHEQG--------AGFMADGYAR---VSGKPGVCFIITGPGM 76 (535)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHhhcCCcEEEeccHHH--------HHHHHHHHHH---HhCCCeEEEECCCccH
Confidence 478999999999999876321 223334445788865433221 1122222222 1344444445556666
Q ss_pred HHHHHHHHHH
Q 028983 155 TGCLVGCLRK 164 (201)
Q Consensus 155 TG~vva~~l~ 164 (201)
|-++.+++-.
T Consensus 77 ~n~~~gi~~A 86 (535)
T PRK07524 77 TNIATAMGQA 86 (535)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 252
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.25 E-value=4.3e+02 Score=24.93 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=25.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhh-CCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~-~gi~~~~ip 113 (201)
++.|+++||++|+-+-..... .+.+.+.. .||+++...
T Consensus 11 ~~~L~~~Gv~~vFgvpG~~~~-~l~d~l~~~~~i~~i~~r 49 (574)
T PRK07979 11 VRSLIDQGVKQVFGYPGGAVL-DIYDALHTVGGIDHVLVR 49 (574)
T ss_pred HHHHHHcCCCEEEEccCcchH-HHHHHHHhcCCceEEEeC
Confidence 478999999999999886332 12233333 578888643
No 253
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.20 E-value=2.1e+02 Score=23.83 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHccCCCcEEEEcCCCCChHHHHHHHHHH
Q 028983 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRK 164 (201)
Q Consensus 127 ~~i~~~l~~l~~~~~~pVLVHC~aG~~RTG~vva~~l~ 164 (201)
+.+.++.+.+.+. .+.|+|- |.||||.+.-++-+
T Consensus 26 ~~~~~a~~~i~~~-~gkv~V~---G~GkSG~Igkk~Aa 59 (202)
T COG0794 26 EDFVRAVELILEC-KGKVFVT---GVGKSGLIGKKFAA 59 (202)
T ss_pred HHHHHHHHHHHhc-CCcEEEE---cCChhHHHHHHHHH
Confidence 5677788887764 6777774 89999998876654
No 254
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.19 E-value=2.9e+02 Score=22.15 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.++--|..+.........+..+.+...+..+-. ..+.+.++++.+.... .--++|||.+.
T Consensus 21 a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 21 ALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT-------DEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3556677987655544432111111222223444333333221 1467777777765422 23489998764
No 255
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=22.16 E-value=3.9e+02 Score=20.91 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=43.0
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCCC-CCCCCCCHHHHHHHHHHHHccCC
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHK-EPFVNIPEDMIREALKVLLDVRN 141 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~~-~p~~~i~~~~i~~~l~~l~~~~~ 141 (201)
+|.+..+++.+++++.++|..+ +++.+...-....+.+++.|.. -+++.+.... ..-..++.+.+.++++.+....+
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~-~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~~~~~ 141 (211)
T cd06808 63 LFLGPCKQVSELEDAAEQGVIV-VTVDSLEELEKLEEAALKAGPPARVLLRIDTGDENGKFGVRPEELKALLERAKELPH 141 (211)
T ss_pred EEcCCCCCHHHHHHHHHcCCCE-EEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 4555555678888888775433 3444331111223333333433 3556665320 11124555677778777754322
Q ss_pred -CcEEEEcCCC
Q 028983 142 -HPVLIHCKRG 151 (201)
Q Consensus 142 -~pVLVHC~aG 151 (201)
.-.-+|++.|
T Consensus 142 l~l~Gl~~H~~ 152 (211)
T cd06808 142 LRLVGLHTHFG 152 (211)
T ss_pred CcEEEEEEecC
Confidence 3344555444
No 256
>PRK08628 short chain dehydrogenase; Provisional
Probab=22.04 E-value=4.2e+02 Score=21.31 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=35.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG 151 (201)
...|.+.|.+.++.-++++.. ...+..+..+-+...++.+- .. .+.+.++++.+.+..+ =-++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~-~~------~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 24 SLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDL-TD------DAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccC-CC------HHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 466777899887766654221 11222222333333333321 11 4567777776654322 2489999853
No 257
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=21.95 E-value=4.2e+02 Score=21.49 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=36.9
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCC-cEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~-~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~-pVLVHC~aG 151 (201)
...|.+.|.+.|+..+.... .....+..+..+-+...++++-. ..+.+.++++.+.+..+. -++|||.+.
T Consensus 24 a~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 24 AVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVT-------VESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35677889988887665421 11112222233434333333221 146777777776553332 289999764
No 258
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=21.89 E-value=4.9e+02 Score=25.11 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=38.4
Q ss_pred cEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCH----HHHHHHHHHHHcc-CCC--cEEEEcCCCC
Q 028983 84 RSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPE----DMIREALKVLLDV-RNH--PVLIHCKRGK 152 (201)
Q Consensus 84 ktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~----~~i~~~l~~l~~~-~~~--pVLVHC~aG~ 152 (201)
-.|+||+++. .+..++.+.|.+.+-+....-+....+.+. +.+.++++.+.+. ... .++=||.+|.
T Consensus 228 ~YIlDL~P~~---SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGt 300 (560)
T TIGR01839 228 FYIFDLSPEK---SFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGL 300 (560)
T ss_pred hheeecCCcc---hHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchH
Confidence 3588888763 456777888999886665442221112221 2455666666542 223 3566799874
No 259
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=21.86 E-value=83 Score=22.72 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHhcCCcEE-EEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 75 FSFLQTLRLRSI-IYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 75 l~~L~~lGIktI-I~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
.+.|.+.|.... +.....+.. ......|+.++.+|+.....+.... ..+..+.+.+......|=+|||...
T Consensus 11 ~~~L~~~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~Dvv~~~~~-- 82 (160)
T PF13579_consen 11 ARALAARGHEVTVVTPQPDPED----DEEEEDGVRVHRLPLPRRPWPLRLL--RFLRRLRRLLAARRERPDVVHAHSP-- 82 (160)
T ss_dssp HHHHHHTT-EEEEEEE---GGG-----SEEETTEEEEEE--S-SSSGGGHC--CHHHHHHHHCHHCT---SEEEEEHH--
T ss_pred HHHHHHCCCEEEEEecCCCCcc----cccccCCceEEeccCCccchhhhhH--HHHHHHHHHHhhhccCCeEEEeccc--
Confidence 356788888764 443333211 1133468999999987754221111 2333333333223567778888873
Q ss_pred hHHHHHHHHH
Q 028983 154 RTGCLVGCLR 163 (201)
Q Consensus 154 RTG~vva~~l 163 (201)
-++.+..++.
T Consensus 83 ~~~~~~~~~~ 92 (160)
T PF13579_consen 83 TAGLVAALAR 92 (160)
T ss_dssp HHHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 3555555444
No 260
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=21.81 E-value=6.6e+02 Score=23.60 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=42.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-..... .+.+.+.+.+|+++...=+.. .......... ..++|..+-|+.|-|=
T Consensus 15 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~i~~v~~~hE~~--------A~~~Adgyar---~tg~~~v~~~t~GpG~ 82 (561)
T PRK06048 15 IKCLEKEGVEVIFGYPGGAII-PVYDELYDSDLRHILVRHEQA--------AAHAADGYAR---ATGKVGVCVATSGPGA 82 (561)
T ss_pred HHHHHHcCCCEEEECCCcchH-HHHHHHhhCCCeEEEeccHHH--------HHHHHHHHHH---HhCCCeEEEECCCCcH
Confidence 488999999999999886332 223333456788876433221 0111111111 1344555555666666
Q ss_pred HHHHHHHHHH
Q 028983 155 TGCLVGCLRK 164 (201)
Q Consensus 155 TG~vva~~l~ 164 (201)
+..+.+++-.
T Consensus 83 ~n~~~gl~~A 92 (561)
T PRK06048 83 TNLVTGIATA 92 (561)
T ss_pred HHHHHHHHHH
Confidence 6555555544
No 261
>PRK05866 short chain dehydrogenase; Provisional
Probab=21.60 E-value=2.8e+02 Score=23.49 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG~ 152 (201)
...|.+.|.+.++--|..+..+...+.....+.+...++.+-. ..+.+.++++.+.+.. +--++|||.++.
T Consensus 57 a~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~-------d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 57 AEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLS-------DLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3556778987766655532111111222223333333333211 1467777877765432 335899997654
No 262
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=21.47 E-value=2.7e+02 Score=21.84 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=25.3
Q ss_pred chHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcC
Q 028983 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (201)
Q Consensus 97 ~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~ 149 (201)
++...++..|+.+..+.-.+. .+.+.++++.... .++|.+||+.
T Consensus 132 d~~~~a~a~G~~~~~v~~~~~--------l~~~~~al~~a~~-~~gp~lI~v~ 175 (178)
T cd02008 132 DIEALVRAIGVKRVVVVDPYD--------LKAIREELKEALA-VPGVSVIIAK 175 (178)
T ss_pred CHHHHHHHCCCCEEEecCccC--------HHHHHHHHHHHHh-CCCCEEEEEe
Confidence 345566667777665322111 3444456666543 5789999875
No 263
>PRK06139 short chain dehydrogenase; Provisional
Probab=21.36 E-value=2.7e+02 Score=24.29 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKR 150 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~a 150 (201)
...|.+.|.+.|+.-|.++..+...+.++..|.+...++.+-. ..+.+.++++.+.+.. .--++|||.+
T Consensus 24 a~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 24 AEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVT-------DADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-------CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3567788998777666542111222334445655544444221 1467888887775532 2348999964
No 264
>PRK05693 short chain dehydrogenase; Provisional
Probab=21.22 E-value=4.6e+02 Score=21.44 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKR 150 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~a 150 (201)
...|.+.|.+.++.-|..+ . .+.....++.++..-+.+ .+.+.++++.+.+..+ --++|||.+
T Consensus 18 a~~l~~~G~~V~~~~r~~~---~-~~~~~~~~~~~~~~Dl~~---------~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 18 ADAFKAAGYEVWATARKAE---D-VEALAAAGFTAVQLDVND---------GAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred HHHHHHCCCEEEEEeCCHH---H-HHHHHHCCCeEEEeeCCC---------HHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3566778987555444321 1 122233466555443333 4677777777654322 348999975
No 265
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=21.20 E-value=3.2e+02 Score=22.24 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=43.4
Q ss_pred hHHHHHhcCCcEEEEcCCC-CCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCC
Q 028983 74 NFSFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 74 ~l~~L~~lGIktII~Lr~e-~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
....+.++|++=-+-+..- ...+...+++++.++.++.+|-+.+. .....+++.+.+.....|+|....|.
T Consensus 27 Ga~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~--------TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 27 GANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDT--------TDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred HHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCC--------CHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 3566666776543322221 23334566777788888777665431 24456777766544556888877774
Q ss_pred ChHH
Q 028983 153 HRTG 156 (201)
Q Consensus 153 ~RTG 156 (201)
|-=
T Consensus 99 -R~D 101 (203)
T TIGR01378 99 -RLD 101 (203)
T ss_pred -cHH
Confidence 864
No 266
>PLN02537 diaminopimelate decarboxylase
Probab=21.19 E-value=4.8e+02 Score=23.43 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=48.1
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCCC-----------C--CCCCCCHHHH
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHK-----------E--PFVNIPEDMI 129 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~~-----------~--p~~~i~~~~i 129 (201)
+|.++..+..++++..++|+. +++.+.+.-+.....++..|.. -+++.+.... . .-..++.+.+
T Consensus 91 i~~g~~k~~~~l~~a~~~gv~--i~ids~~el~~l~~~a~~~~~~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~~~~~ 168 (410)
T PLN02537 91 IFNGNGKLLEDLVLAAQEGVF--VNVDSEFDLENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 168 (410)
T ss_pred EEECCCCCHHHHHHHHHCCCE--EEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCccccCCCCCCCCCCHHHH
Confidence 666666677889998999994 5665542111233444444432 3455554210 0 1124455667
Q ss_pred HHHHHHHHccC-C-CcEEEEcCCCCC
Q 028983 130 REALKVLLDVR-N-HPVLIHCKRGKH 153 (201)
Q Consensus 130 ~~~l~~l~~~~-~-~pVLVHC~aG~~ 153 (201)
.++++.+.... + .-+-+||+.|-.
T Consensus 169 ~~~~~~~~~~~~~l~l~Glh~H~gs~ 194 (410)
T PLN02537 169 QWFLDAVKAHPNELKLVGAHCHLGST 194 (410)
T ss_pred HHHHHHHHhCCCCCcEEEEEeccCCC
Confidence 77777765432 2 446777777653
No 267
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.18 E-value=6.1e+02 Score=22.78 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=62.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeC-CCCCCCCCCC------HHHHHHHHHHHHcc--CCCcEE
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIE-GHKEPFVNIP------EDMIREALKVLLDV--RNHPVL 145 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~-d~~~p~~~i~------~~~i~~~l~~l~~~--~~~pVL 145 (201)
++.|+++||..+|.+-....-.....+.+..+|..+.+|-. |++-|..+.+ .+.+.++++.+... ....++
T Consensus 100 ~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~~~id~i~~ta~s~~rv~ 179 (360)
T PRK14071 100 IDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAASHNRVM 179 (360)
T ss_pred HHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHHHHHHHHHHHhhhcccCCEE
Confidence 57789999999999998732222223333349999999965 4443322221 12344455555442 234677
Q ss_pred EEcCCCCChHHHHHHHHHHH----------CCCCHHHHHHHHHHH
Q 028983 146 IHCKRGKHRTGCLVGCLRKL----------QKWCLSSVFDEYQRF 180 (201)
Q Consensus 146 VHC~aG~~RTG~vva~~l~~----------~g~s~~~ai~ey~~~ 180 (201)
|.=.-|. .+|.+++.--+. ..++.+++++...+.
T Consensus 180 ivEvMGR-~~G~LAl~~~la~ga~~iliPE~~~~~~~l~~~i~~~ 223 (360)
T PRK14071 180 ILEVMGR-DAGHIALAAGIAGGADVILIPEIPYTLENVCKKIRER 223 (360)
T ss_pred EEEECCC-CccHHHHHhHhhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 7767775 778765433222 357788887766543
No 268
>PRK06483 dihydromonapterin reductase; Provisional
Probab=21.13 E-value=4.3e+02 Score=21.00 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=35.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.|+.-|..+ ...+..+..|+.++...+.+ .+.+.++++.+.+.- .--++|||.+.
T Consensus 19 a~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~D~~~---------~~~~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 19 AWHLLAQGQPVIVSYRTHY---PAIDGLRQAGAQCIQADFST---------NAGIMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHHHHHCCCeEEEEeCCch---hHHHHHHHcCCEEEEcCCCC---------HHHHHHHHHHHHhhCCCccEEEECCcc
Confidence 3567778987776555432 11223334465544333322 466777777765422 23489999764
No 269
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=21.09 E-value=4.9e+02 Score=25.36 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=48.3
Q ss_pred eEecCCCChhhHHHH---HhcCCcEEEEcCCCCCCCchHHHHhhCCcE-E--EEeeeCCC----------CCCCCCCCHH
Q 028983 64 IFRSGFPDSANFSFL---QTLRLRSIIYLCPEPYPEANTEFLKSNGIK-L--FQFAIEGH----------KEPFVNIPED 127 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L---~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~--~~ipi~d~----------~~p~~~i~~~ 127 (201)
++-.|.-+.+.++.. .++|.+.+|++-....-+...+.+++.|++ - +.+..... ....+.++.+
T Consensus 142 Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~~ 221 (624)
T TIGR01273 142 IVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARLASKGSGKWASSGGEKSKFGLSAT 221 (624)
T ss_pred EEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCcccCCCCCCCCCCCHH
Confidence 444444344445432 467888888887652112234444444432 1 22211111 1123467778
Q ss_pred HHHHHHHHHHccCC--CcEEEEcCCCCC
Q 028983 128 MIREALKVLLDVRN--HPVLIHCKRGKH 153 (201)
Q Consensus 128 ~i~~~l~~l~~~~~--~pVLVHC~aG~~ 153 (201)
++.++++.+.+... .-.++||+-|..
T Consensus 222 ei~~~i~~lk~~~~l~~L~GLHfHiGSQ 249 (624)
T TIGR01273 222 QILEVVRLLEQNGLLDCLKLLHFHIGSQ 249 (624)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCC
Confidence 88888888765332 357899988864
No 270
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=21.06 E-value=4.2e+02 Score=23.38 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=44.8
Q ss_pred eEecCCCChhhHHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcE-EEEeeeCCC-C-----------C-CCCCCCHHHH
Q 028983 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGH-K-----------E-PFVNIPEDMI 129 (201)
Q Consensus 64 Lyrsg~p~~~~l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~-~~~ipi~d~-~-----------~-p~~~i~~~~i 129 (201)
+|.+......++++..+.|+..| ++.+.+.-....+.+++.|.+ -+++.+... . . .-+.++.+.+
T Consensus 73 ~~~gp~k~~~~l~~a~~~gi~~i-~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~ 151 (377)
T cd06843 73 IFGGPGKTDSELAQALAQGVERI-HVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADL 151 (377)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEE-EeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHH
Confidence 45554567778888888898655 344431111223334444432 234444321 0 0 1124555667
Q ss_pred HHHHHHHHccCC-CcEEEEcCCCC
Q 028983 130 REALKVLLDVRN-HPVLIHCKRGK 152 (201)
Q Consensus 130 ~~~l~~l~~~~~-~pVLVHC~aG~ 152 (201)
.++++.+....+ .-+-+||+.|-
T Consensus 152 ~~~~~~~~~~~~l~~~Glh~H~gs 175 (377)
T cd06843 152 PDALELLRDLPNIRLRGFHFHLMS 175 (377)
T ss_pred HHHHHHHHhCCCccEEEEEEEcCc
Confidence 777777654322 33556666663
No 271
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=21.04 E-value=4e+02 Score=25.50 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEE
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQ 111 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ 111 (201)
+.|+.+|+++|+-+..-+.. .....++..||+|+-
T Consensus 22 ~~Lk~~gVe~iFgiVGipV~-el~~aaqalGIk~I~ 56 (571)
T KOG1185|consen 22 AVLKAQGVEYIFGIVGIPVI-ELAVAAQALGIKFIG 56 (571)
T ss_pred HHHHHcCceEEEEEeccchH-HHHHHHHHcCCeEee
Confidence 67899999999999987543 345677889999984
No 272
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=20.97 E-value=2.7e+02 Score=22.68 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=34.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhC-CcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSN-GIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~-gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
...|.+.|.+.++.-|.++......+.++.. ++.++...+.+ .+.+.++++.+.+.. .--++|||.+.
T Consensus 17 a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d---------~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 17 ARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSD---------KDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC---------HHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3556778987666544431101111112222 23333322222 467777887765532 23489999764
No 273
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=20.96 E-value=5.2e+02 Score=24.09 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ip 113 (201)
++.|+++||++|+-+-..... .+.+.+.+.+|+++...
T Consensus 6 ~~~L~~~Gv~~vFg~pG~~~~-~l~dal~~~~i~~i~~~ 43 (539)
T TIGR02418 6 VDQLENQGVRYVFGIPGAKID-RVFDALEDKGIELIVVR 43 (539)
T ss_pred HHHHHHcCCCEEEECCCCchH-HHHHHHhhCCCCEEEeC
Confidence 578999999999999887432 22233445678887644
No 274
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.92 E-value=3.5e+02 Score=23.83 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=46.5
Q ss_pred hhHHHHHhcCCcEEEEcCCCCCC----CchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEc
Q 028983 73 ANFSFLQTLRLRSIIYLCPEPYP----EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHC 148 (201)
Q Consensus 73 ~~l~~L~~lGIktII~Lr~e~~~----~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC 148 (201)
+-++.++.+|.++|.-|-...+. ..+.+.++..|++...+.+..-..+ .....++..++.|.......|++||
T Consensus 108 ai~d~i~~~~wk~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~---~~~~d~~~~L~~ik~~~~~~Iil~~ 184 (370)
T cd06389 108 ALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND---RKDEAYRSLFQDLENKKERRVILDC 184 (370)
T ss_pred HHHHHHHhcCCcEEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCc---cchHHHHHHHHHhccccceEEEEEC
Confidence 34566888999998888864322 1234455667866554433221111 1134667778887666678899999
Q ss_pred CCC
Q 028983 149 KRG 151 (201)
Q Consensus 149 ~aG 151 (201)
...
T Consensus 185 ~~~ 187 (370)
T cd06389 185 ERD 187 (370)
T ss_pred CHH
Confidence 864
No 275
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=20.87 E-value=3.7e+02 Score=21.70 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=36.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCC-CcEEEEcCCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRGK 152 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~-~pVLVHC~aG~ 152 (201)
...|.+.|.+.|+--+..+.........+..+-+...++++-. ..+.+.++++.+.+.-+ --++|||.+..
T Consensus 28 a~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 28 AITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT-------SEQELSALADFALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3667788988766544432111111222223333333333211 14677777777655322 34899998753
No 276
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=20.78 E-value=5.2e+02 Score=24.21 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCCh
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~R 154 (201)
++.|+++||++|+-+-..... .+.+.+...+|+++...=+.. .......... ..++|..+-|+.|-|=
T Consensus 9 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~i~~v~~~hE~~--------A~~mAdgyar---~tgkpgv~~~t~GPG~ 76 (549)
T PRK06457 9 IRVLEDNGIQRIYGIPGDSID-PLVDAIRKSKVKYVQVRHEEG--------AALAASVEAK---ITGKPSACMGTSGPGS 76 (549)
T ss_pred HHHHHHcCCCEEEEcCCcchH-HHHHHHHhcCCeEEEeCcHHH--------HHHHHHHHHH---HhCCCeEEEeCCCCch
Confidence 478999999999999887332 233334456788875322210 1112222221 2345655556666666
Q ss_pred HHHHHHHHHH
Q 028983 155 TGCLVGCLRK 164 (201)
Q Consensus 155 TG~vva~~l~ 164 (201)
|-++.+++-.
T Consensus 77 ~N~l~~l~~A 86 (549)
T PRK06457 77 IHLLNGLYDA 86 (549)
T ss_pred hhhHHHHHHH
Confidence 6666665554
No 277
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=20.62 E-value=4.7e+02 Score=24.02 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=37.2
Q ss_pred hcCCcEEEEcCCCC-C--CCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 028983 80 TLRLRSIIYLCPEP-Y--PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (201)
Q Consensus 80 ~lGIktII~Lr~e~-~--~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~~ 153 (201)
..|+.++|++-.+- . .+...-+......+.+-+-+++-..+ ..+.++++... .++||++. +.|..
T Consensus 174 g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~------~~f~~aa~~a~--~~KPVv~~-k~Grs 241 (447)
T TIGR02717 174 GVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDG------RKFLKTAREIS--KKKPIVVL-KSGTS 241 (447)
T ss_pred CCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCCH------HHHHHHHHHHc--CCCCEEEE-ecCCC
Confidence 47899999999871 1 11222233446677776667664332 23333444432 48999995 44443
No 278
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.52 E-value=4.1e+02 Score=22.73 Aligned_cols=72 Identities=13% Similarity=0.321 Sum_probs=40.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHHhh-CCcEEEE--eeeCCCCCCCCCCCHHHHHHHHHHHHccCCCcEEEEcCCCC
Q 028983 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQ--FAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 76 ~~L~~lGIktII~Lr~e~~~~~~~~~~~~-~gi~~~~--ipi~d~~~p~~~i~~~~i~~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
+.++++|+..|.-+.+....+.....++. .|+-|+- .++.+... .+ .+.+.+.++.+....+.|++| .-|.
T Consensus 138 ~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~---~~-~~~~~~~i~~ir~~t~~Pi~v--GFGI 211 (263)
T CHL00200 138 SVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKT---EL-DKKLKKLIETIKKMTNKPIIL--GFGI 211 (263)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCc---cc-cHHHHHHHHHHHHhcCCCEEE--ECCc
Confidence 45567777777777776443444444443 3566642 22222211 11 356777777776655788887 5665
Q ss_pred C
Q 028983 153 H 153 (201)
Q Consensus 153 ~ 153 (201)
+
T Consensus 212 ~ 212 (263)
T CHL00200 212 S 212 (263)
T ss_pred C
Confidence 3
No 279
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=20.49 E-value=1.4e+02 Score=21.83 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=19.1
Q ss_pred eEecCCC-ChhhHHHHHhcCCcEEEEcC
Q 028983 64 IFRSGFP-DSANFSFLQTLRLRSIIYLC 90 (201)
Q Consensus 64 Lyrsg~p-~~~~l~~L~~lGIktII~Lr 90 (201)
+..++.. +..+++.|+++||+.|+--.
T Consensus 29 l~~~f~I~s~~~I~~L~~~gi~~V~Id~ 56 (128)
T PF11871_consen 29 LFQGFLIKSQADIEKLRRLGIQEVYIDP 56 (128)
T ss_pred eeeceeECCHHHHHHHHHCCCcEEEEEC
Confidence 3344444 46789999999999976543
No 280
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.46 E-value=1.7e+02 Score=26.14 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCChH---HHHHHHHHH
Q 028983 140 RNHPVLIHCKRGKHRT---GCLVGCLRK 164 (201)
Q Consensus 140 ~~~pVLVHC~aG~~RT---G~vva~~l~ 164 (201)
.+..||-||.+|.-.| |++.+.++.
T Consensus 136 ~g~~ILThcnsg~la~~~~gTal~~l~~ 163 (329)
T PRK06371 136 NGARILTHCNAGALAVVDWGTALAPIRI 163 (329)
T ss_pred CCCEEEEeCCCCcceeccchhHHHHHHH
Confidence 4567999999986444 666666655
No 281
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.28 E-value=3.2e+02 Score=22.75 Aligned_cols=69 Identities=7% Similarity=-0.040 Sum_probs=36.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHHHHHHHHHccC-CCcEEEEcCCC
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~~~l~~l~~~~-~~pVLVHC~aG 151 (201)
.+.|.+.|.+.++.-|.+...+...+..++.|- ...++.+- . ..+.+.++++.+.+.- .--++|||.+.
T Consensus 29 a~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl-~------~~~~v~~~~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 29 AKACRAAGAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDV-T------DEASIDAVFETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCC-C------CHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 466778899877765542111122223333232 11122211 1 2577888888876532 23489999754
No 282
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.28 E-value=4.1e+02 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=25.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHH-hhCCcEEEEee
Q 028983 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFA 113 (201)
Q Consensus 75 l~~L~~lGIktII~Lr~e~~~~~~~~~~-~~~gi~~~~ip 113 (201)
++.|+++||++|+-+-...... +.+.+ +..||+++...
T Consensus 11 ~~~L~~~Gv~~vFgvpG~~~~~-l~~al~~~~~i~~v~~r 49 (572)
T PRK08979 11 VRSLIDEGVKHIFGYPGGSVLD-IYDALHEKSGIEHILVR 49 (572)
T ss_pred HHHHHHcCCCEEEEcCCcchHH-HHHHHhhcCCCeEEEeC
Confidence 4789999999999998863322 22333 33578887644
No 283
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=20.07 E-value=1.1e+02 Score=24.61 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=18.9
Q ss_pred EEEEc-CCCCChHHHHHH-HHHHHCCCC
Q 028983 144 VLIHC-KRGKHRTGCLVG-CLRKLQKWC 169 (201)
Q Consensus 144 VLVHC-~aG~~RTG~vva-~~l~~~g~s 169 (201)
+.||. ..|-||||=+.. +++...|.+
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 67998 899999995555 445556754
No 284
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.04 E-value=5.3e+02 Score=22.69 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=45.4
Q ss_pred eEecCCC--ChhhHHHHHhcCCcEEEEcCCC-----------CCCCchHHHHhhCCcEEEEeeeCCCCCCCCCCCHHHHH
Q 028983 64 IFRSGFP--DSANFSFLQTLRLRSIIYLCPE-----------PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (201)
Q Consensus 64 Lyrsg~p--~~~~l~~L~~lGIktII~Lr~e-----------~~~~~~~~~~~~~gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (201)
+|.=|.. .+.-++.|++.|+++|=++..- ..+....+.+++.|+.++ |..-|++ ..+.
T Consensus 33 iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~vi-----DaTCP~V----~k~~ 103 (298)
T PRK01045 33 IYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVI-----DATCPLV----TKVH 103 (298)
T ss_pred eEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----eCCCccc----hHHH
Confidence 5544443 3456788888898877544321 122334566777787776 4444542 3444
Q ss_pred HHHHHHHccCCCcEEEEcCCCC
Q 028983 131 EALKVLLDVRNHPVLIHCKRGK 152 (201)
Q Consensus 131 ~~l~~l~~~~~~pVLVHC~aG~ 152 (201)
+.++.+.+ +++.|+++...|.
T Consensus 104 ~~v~~~~~-~Gy~vvi~G~~~H 124 (298)
T PRK01045 104 KEVARMSR-EGYEIILIGHKGH 124 (298)
T ss_pred HHHHHHHh-CCCEEEEEeCCCC
Confidence 45554433 5777887776554
Done!