Query 028984
Match_columns 200
No_of_seqs 110 out of 137
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jsu_C P27, KIP1, CIP2; comple 99.7 9.1E-19 3.1E-23 130.9 4.0 47 152-198 14-60 (84)
2 2eoc_A Poly [ADP-ribose] polym 32.2 47 0.0016 25.1 3.9 28 169-196 93-123 (124)
3 1q1v_A DEK protein; winged-hel 30.7 99 0.0034 21.6 5.1 34 148-181 8-52 (70)
4 3cjs_A L11 mtase, ribosomal pr 28.9 28 0.00096 24.5 1.9 20 178-199 39-58 (59)
5 3no7_A PARB, putative plasmid 26.7 68 0.0023 23.7 3.8 32 157-189 40-76 (80)
6 1jmt_A Splicing factor U2AF 35 21.5 78 0.0027 22.3 3.2 25 153-177 28-52 (104)
7 3l9k_W Dynein intermediate cha 18.7 1.3E+02 0.0044 19.2 3.4 27 152-178 10-36 (38)
8 2jr3_A Pelovaterin; beta-defen 12.6 84 0.0029 20.5 1.3 18 75-92 2-22 (42)
9 3zxs_A Cryptochrome B, rscryb; 11.6 75 0.0026 29.9 1.2 18 174-191 184-201 (522)
10 1s4n_A Glycolipid 2-alpha-mann 11.6 66 0.0023 29.1 0.8 33 154-187 37-71 (348)
No 1
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=99.74 E-value=9.1e-19 Score=130.85 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhCCcccCCccCCCccceEEcCCC
Q 028984 152 PSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEA 198 (200)
Q Consensus 152 Pt~~E~eeFFa~aEke~q~rF~~KyNFDf~~d~PLeGRYEW~~v~~~ 198 (200)
|..+||++||++++++++++|++||||||++|+||+|||+|++|+..
T Consensus 14 vd~eEl~~~f~~~l~~~~e~~~~KWNFDF~~d~PL~GryeWe~V~~~ 60 (84)
T 1jsu_C 14 VDHEELTRDLEKHCRDMEEASQRKWNFDFQNHKPLEGKYEWQEVEKG 60 (84)
T ss_dssp CCHHHHHHHHHHHHTTTTHHHHHHHTEETTTTEECSSSSCCEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCceEEEEccCC
Confidence 78899999999999999999999999999999999999999999754
No 2
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.21 E-value=47 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=18.0
Q ss_pred HHHHHhh--hCCcccCC-ccCCCccceEEcC
Q 028984 169 QERFAEK--YNYDIVND-LPLEGRYQWVRLN 196 (200)
Q Consensus 169 q~rF~~K--yNFDf~~d-~PLeGRYEW~~v~ 196 (200)
++.|.+| .+|.-..+ +|.||.|-|..++
T Consensus 93 ~k~f~~Ktgn~w~~r~~f~~~pgky~~~e~d 123 (124)
T 2eoc_A 93 EKKFREKTKNNWAERDHFVSHPGKYTLIEVQ 123 (124)
T ss_dssp HHHHHHHHSSCSTTGGGCCCCSSSCEEECCC
T ss_pred HHHHHHHHcCCcccccCcccCCCceeEEEec
Confidence 3444444 33433334 7899999999876
No 3
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=30.68 E-value=99 Score=21.57 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=27.3
Q ss_pred cCCCCChHHHHHHHHHH----------HHHHHHHHHhhh-CCccc
Q 028984 148 EEKIPSAAEIDEFFTAA----------EKREQERFAEKY-NYDIV 181 (200)
Q Consensus 148 ~~~~Pt~~E~eeFFa~a----------Eke~q~rF~~Ky-NFDf~ 181 (200)
...+|+.+||.+--.+. .|++++...++| ++|..
T Consensus 8 ~~~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs 52 (70)
T 1q1v_A 8 LKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT 52 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS
T ss_pred ccCCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh
Confidence 45689999887765553 689999999999 99975
No 4
>3cjs_A L11 mtase, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus}
Probab=28.87 E-value=28 Score=24.51 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=16.6
Q ss_pred CcccCCccCCCccceEEcCCCC
Q 028984 178 YDIVNDLPLEGRYQWVRLNEAS 199 (200)
Q Consensus 178 FDf~~d~PLeGRYEW~~v~~~~ 199 (200)
||--.|.|+.| +|..+..+|
T Consensus 39 F~~~~dlp~~g--ew~e~pD~D 58 (59)
T 3cjs_A 39 FPAPVDLPYEG--VWEEVGDED 58 (59)
T ss_dssp ESSCCCCSSCC--EEEECCCC-
T ss_pred cCCcccCCCCc--eecccCCCC
Confidence 77889999999 999988765
No 5
>3no7_A PARB, putative plasmid related protein; ribbon-helix-helix, DNA binding protein; 1.40A {Leifsonia xyli subsp}
Probab=26.71 E-value=68 Score=23.66 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhC----CcccCCccCC-Cc
Q 028984 157 IDEFFTAAEKREQERFAEKYN----YDIVNDLPLE-GR 189 (200)
Q Consensus 157 ~eeFFa~aEke~q~rF~~KyN----FDf~~d~PLe-GR 189 (200)
+-+|-.+|=...-+|..+||| |+. .+-+|+ ||
T Consensus 40 lS~Fi~aAv~~ev~rlE~kyN~G~pf~~-~~g~lp~Gr 76 (80)
T 3no7_A 40 FSGFIAAALDAEVQRLEQRYNEGRRFEN-AERGVTRGR 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCC-CC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCCCCC
Confidence 346666665555678889999 777 777777 65
No 6
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=21.49 E-value=78 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhC
Q 028984 153 SAAEIDEFFTAAEKREQERFAEKYN 177 (200)
Q Consensus 153 t~~E~eeFFa~aEke~q~rF~~KyN 177 (200)
++++|.+.|...+.++.+.|..+|.
T Consensus 28 ~~~~l~~~f~~~~edl~~~f~~~~G 52 (104)
T 1jmt_A 28 SDVEMQEHYDEFFEEVFTEMEEKYG 52 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6788999999999999999956664
No 7
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=18.66 E-value=1.3e+02 Score=19.24 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhCC
Q 028984 152 PSAAEIDEFFTAAEKREQERFAEKYNY 178 (200)
Q Consensus 152 Pt~~E~eeFFa~aEke~q~rF~~KyNF 178 (200)
-.+.++-+||..+=|=|+++..+.|++
T Consensus 10 ~~S~~F~~F~~rsskviERAL~e~yDi 36 (38)
T 3l9k_W 10 ILSENFQRFVVRAGRVIERALSENVDI 36 (38)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hcCHHHHHHHHHHHHHHHHHHcccccc
Confidence 356789999999999999999987664
No 8
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=12.57 E-value=84 Score=20.47 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=13.3
Q ss_pred CcccccccCCCC---cccccc
Q 028984 75 NFSTSRSSSDDV---IKSADL 92 (200)
Q Consensus 75 ~~~~ScCSSN~s---ik~~DL 92 (200)
+-|.|+|+|.+- +..+||
T Consensus 2 dtpssrcgsggwgpclpivdl 22 (42)
T 2jr3_A 2 DTPSSRCGSGGWGPCLPIVDL 22 (42)
T ss_dssp CCCSCCTTTSSBCSCEEGGGC
T ss_pred CCccccccCCCcccchhhhee
Confidence 457889999876 566676
No 9
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=11.63 E-value=75 Score=29.94 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.0
Q ss_pred hhhCCcccCCccCCCccc
Q 028984 174 EKYNYDIVNDLPLEGRYQ 191 (200)
Q Consensus 174 ~KyNFDf~~d~PLeGRYE 191 (200)
-|||||-.|-.|+|+...
T Consensus 184 G~WnfD~~NRk~~p~~~~ 201 (522)
T 3zxs_A 184 GKWNFDTENRKPAAPDLL 201 (522)
T ss_dssp GSSCCGGGSCCCCCCCTT
T ss_pred CccCccccccccCCCCCC
Confidence 389999999999997544
No 10
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP: c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Probab=11.58 E-value=66 Score=29.13 Aligned_cols=33 Identities=21% Similarity=0.510 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCc--ccCCccCC
Q 028984 154 AAEIDEFFTAAEKREQERFAEKYNYD--IVNDLPLE 187 (200)
Q Consensus 154 ~~E~eeFFa~aEke~q~rF~~KyNFD--f~~d~PLe 187 (200)
-.||++-.... +++++||-.||||| |.||.|+.
T Consensus 37 N~el~~~l~Si-~~vE~rFN~~y~YpwvFlNd~pFt 71 (348)
T 1s4n_A 37 NKELKGLLSSI-KYVENKINKKFPYPWVFLNDEPFT 71 (348)
T ss_dssp GGGHHHHHHHH-HHHHHHTTTTSCCCEEEEESSCCC
T ss_pred cHHHHHHHHHH-HHHHHHhhccCCCCEEEecCCCCC
Confidence 35777765544 58899999999999 55888875
Done!