Query 028984
Match_columns 200
No_of_seqs 110 out of 137
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 08:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028984.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028984hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q1va_ a.159.4.1 (A:) DEK C-t 23.6 70 0.0051 20.8 5.0 33 149-181 9-52 (70)
2 d1jmqa_ b.72.1.1 (A:) Yap65 ww 13.4 33 0.0024 20.8 1.2 10 178-187 1-10 (46)
3 d1oh0a_ d.17.4.3 (A:) Delta-5- 8.7 1.1E+02 0.0084 19.1 2.8 35 151-185 1-39 (125)
4 d1lsta_ c.94.1.1 (A:) Lysine-, 8.5 1.6E+02 0.011 20.0 3.6 28 155-182 208-237 (238)
5 d1t3ba2 d.17.3.1 (A:2-60) Disu 7.8 48 0.0035 20.8 0.4 18 175-192 12-29 (59)
6 d1eeja2 d.17.3.1 (A:1-60) Disu 7.2 82 0.006 19.7 1.4 26 166-191 3-29 (60)
7 d1tyya_ c.72.1.1 (A:) Aminoimi 7.2 82 0.006 22.2 1.6 15 148-162 290-304 (304)
8 d2cr9a1 d.297.1.1 (A:8-133) Po 7.1 1.9E+02 0.014 20.2 3.6 32 164-195 93-126 (126)
9 d1ea0a2 c.1.4.1 (A:423-1193) A 7.0 1.4E+02 0.01 27.4 3.4 32 162-194 330-361 (771)
10 d1ik9a1 b.59.1.1 (A:1-117) XRC 7.0 57 0.0041 23.7 0.5 27 167-196 69-101 (117)
No 1
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.63 E-value=70 Score=20.76 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.9
Q ss_pred CCCCChHHHHHHHHHH----------HHHHHHHHHhhh-CCccc
Q 028984 149 EKIPSAAEIDEFFTAA----------EKREQERFAEKY-NYDIV 181 (200)
Q Consensus 149 ~~~Pt~~E~eeFFa~a----------Eke~q~rF~~Ky-NFDf~ 181 (200)
...|+..||...-... .|++++...++| |+|..
T Consensus 9 k~~ptd~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~~g~dL~ 52 (70)
T d1q1va_ 9 KKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT 52 (70)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS
T ss_pred cCCCCHHHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHcCCCCcH
Confidence 4579999988776655 689999999999 89864
No 2
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.41 E-value=33 Score=20.85 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=9.2
Q ss_pred CcccCCccCC
Q 028984 178 YDIVNDLPLE 187 (200)
Q Consensus 178 FDf~~d~PLe 187 (200)
||.-.+.|||
T Consensus 1 ~d~~~~~~LP 10 (46)
T d1jmqa_ 1 FEIPDDVPLP 10 (46)
T ss_dssp CCCCSSCCCC
T ss_pred CCCCccCCCC
Confidence 7889999999
No 3
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=8.67 E-value=1.1e+02 Score=19.11 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=19.8
Q ss_pred CCChHHHHH----HHHHHHHHHHHHHHhhhCCcccCCcc
Q 028984 151 IPSAAEIDE----FFTAAEKREQERFAEKYNYDIVNDLP 185 (200)
Q Consensus 151 ~Pt~~E~ee----FFa~aEke~q~rF~~KyNFDf~~d~P 185 (200)
||+++++.. ||++.+..--+.+.+-|.=|++=.-|
T Consensus 1 mpt~e~~~~~v~~y~~a~~~~D~d~~~~l~~~d~~~~~p 39 (125)
T d1oh0a_ 1 LPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDP 39 (125)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECC
Confidence 788888765 56666554444555555444433333
No 4
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Probab=8.52 E-value=1.6e+02 Score=20.00 Aligned_cols=28 Identities=21% Similarity=0.520 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhh-CCcccC
Q 028984 155 AEIDEFFTAAEKR-EQERFAEKY-NYDIVN 182 (200)
Q Consensus 155 ~E~eeFFa~aEke-~q~rF~~Ky-NFDf~~ 182 (200)
..|+.++....++ .-++..+|| ++|+--
T Consensus 208 ~~in~~l~~~~~~G~~~~I~~kyfg~~~~~ 237 (238)
T d1lsta_ 208 AAFDKALTELRQDGTYDKMAKKYFDFNVYG 237 (238)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTTCSSCTTC
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHCCCCCCC
Confidence 4567777777663 345667777 777643
No 5
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=7.77 E-value=48 Score=20.85 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.5
Q ss_pred hhCCcccCCccCCCccce
Q 028984 175 KYNYDIVNDLPLEGRYQW 192 (200)
Q Consensus 175 KyNFDf~~d~PLeGRYEW 192 (200)
-..+..+...|++|=||=
T Consensus 12 ~~~v~~i~~spi~GlyeV 29 (59)
T d1t3ba2 12 NISNIVIKSSPISGIKTA 29 (59)
T ss_dssp TCCSCCCCBCSSTTEECC
T ss_pred CCeeeEEecCCCCCeEEE
Confidence 356778899999999964
No 6
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.21 E-value=82 Score=19.66 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=17.8
Q ss_pred HHHHHHHHh-hhCCcccCCccCCCccc
Q 028984 166 KREQERFAE-KYNYDIVNDLPLEGRYQ 191 (200)
Q Consensus 166 ke~q~rF~~-KyNFDf~~d~PLeGRYE 191 (200)
..+++++++ --.++-++..|++|=||
T Consensus 3 a~i~~~L~~~~~~v~sV~~spi~Glye 29 (60)
T d1eeja2 3 AAIQQTLAKMGIKSSDIQPAPVAGMKT 29 (60)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSTTEEE
T ss_pred HHHHHHHHhcCCceeEEecCCCCCeEE
Confidence 445555543 23467788999999996
No 7
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=7.20 E-value=82 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=12.1
Q ss_pred cCCCCChHHHHHHHH
Q 028984 148 EEKIPSAAEIDEFFT 162 (200)
Q Consensus 148 ~~~~Pt~~E~eeFFa 162 (200)
...||+.+|+++|.+
T Consensus 290 ~~~~P~~~ev~~~l~ 304 (304)
T d1tyya_ 290 MTALPFPDQLNTFLS 304 (304)
T ss_dssp TTTCCCHHHHHHHHC
T ss_pred CCCCCCHHHHHHhhC
Confidence 346899999999963
No 8
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.11 E-value=1.9e+02 Score=20.16 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhCCccc--CCccCCCccceEEc
Q 028984 164 AEKREQERFAEKYNYDIV--NDLPLEGRYQWVRL 195 (200)
Q Consensus 164 aEke~q~rF~~KyNFDf~--~d~PLeGRYEW~~v 195 (200)
|-++-++.|.+|=.-++. +..|.||+|-|..|
T Consensus 93 Ai~~F~kkF~~KTgn~W~~R~f~k~p~Ky~~ie~ 126 (126)
T d2cr9a1 93 AIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPLEI 126 (126)
T ss_dssp HHHHHHHHHHHHSSSCTTCSSCCCCSSCCEESSC
T ss_pred HHHHHHHHHHHHhCCCcccCCCccCCCCcceeeC
Confidence 333445667776554443 45899999998754
No 9
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=7.03 E-value=1.4e+02 Score=27.38 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhCCcccCCccCCCccceEE
Q 028984 162 TAAEKREQERFAEKYNYDIVNDLPLEGRYQWVR 194 (200)
Q Consensus 162 a~aEke~q~rF~~KyNFDf~~d~PLeGRYEW~~ 194 (200)
...|+++.++...-|+=+ ....|.-|.|.|.+
T Consensus 330 ~~i~~e~~~rh~~A~~~~-~~~L~~gG~y~~r~ 361 (771)
T d1ea0a2 330 NGIQKKVLEQHATAYNEE-VVALPVGGFYRFRK 361 (771)
T ss_dssp HHHHHHHHHHHHHHHSSC-CSSCCCCCSSSCCS
T ss_pred HHHHHHHHHHHHHhcccc-cccCCCCCeeeeec
Confidence 467888888887777632 23344459999975
No 10
>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.96 E-value=57 Score=23.70 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHH------HhhhCCcccCCccCCCccceEEcC
Q 028984 167 REQERF------AEKYNYDIVNDLPLEGRYQWVRLN 196 (200)
Q Consensus 167 e~q~rF------~~KyNFDf~~d~PLeGRYEW~~v~ 196 (200)
+++++| ...|||||.++. --|-|++.-
T Consensus 69 el~kAl~~~~~~~~~y~F~~s~~~---~~fs~kK~l 101 (117)
T d1ik9a1 69 ELRKALLSGAGPADVYTFNFSKES---AYFFFEKNL 101 (117)
T ss_dssp HHHHHHCC----CCCEEEEEETTT---TEEEEEEEC
T ss_pred HHHHHHhcCCCCCcceEEEecccc---EEEEEEeee
Confidence 455666 378999998644 578888753
Done!