BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028985
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
Length = 257
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 34 QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
+I ++ VSK KP S I+ +YD G R FGENYVQE+++KA LP+DIKWHF+G LQ+NK K
Sbjct: 41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
L VPNL VE + + K A L+++ + P+ VQ+NTS E+ KSG++ +
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 159
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIG 174
+ V L C ++ +GLMTIG
Sbjct: 160 IFEVIDFFLSEECKYIKLNGLMTIG 184
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
Length = 234
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 99/186 (53%), Gaps = 13/186 (6%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFR 186
L VL+Q+N S E SKSGI + + V P L GLM I P +Y E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPESEYVRQFEVAR 181
Query: 187 VMDFSF 192
M +F
Sbjct: 182 QMAVAF 187
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein
Ybl036c-Selenomet Crystal
Length = 256
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
Query: 34 QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
+I ++ VSK KP S I+ +YD G R FGENYVQE+++KA LP+DIKWHF+G LQ+NK K
Sbjct: 40 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 99
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
L VPNL VE + + K A L+++ + P+ VQ+NTS E+ KSG++ +
Sbjct: 100 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 158
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIG 174
+ V L C ++ +GL TIG
Sbjct: 159 IFEVIDFFLSEECKYIKLNGLXTIG 183
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
pdb|3R79|B Chain B, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
Length = 244
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V R+ AE+SGR + +VAVSKT I+ V DAG R FGEN VQE K P
Sbjct: 10 LEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWP 69
Query: 74 QLPE---DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
L E DI+ H +G LQSNKA V D+VE + EKIA L + + GR L+
Sbjct: 70 ALKEKTSDIELHLIGPLQSNKAAD---AVALFDVVESIDREKIARALSEECARQGRS-LR 125
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVR 159
VQVNT E K+GIDP + V R
Sbjct: 126 FYVQVNTGLEPQKAGIDPRETVAFVAFCR 154
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 96/186 (51%), Gaps = 13/186 (6%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I +VAVSKTKP S I + DAG R F E+YVQE VDK
Sbjct: 9 LAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIR 68
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++W+F G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 69 HFQELGVTGLEWNFAGPLQSNKSRLV---AEHFDWCITIDRLRIATRLNDQRPAEL--PP 123
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFR 186
L VL+Q+N S E SKSGI + + V P L GL I P +Y E R
Sbjct: 124 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLSAIPAPESEYVRQFEVAR 182
Query: 187 VMDFSF 192
M +F
Sbjct: 183 QMAVAF 188
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From
Bifidobacterium Adolescentis
Length = 282
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 26/179 (14%)
Query: 17 VLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP 76
VL R+ A E++GR +R++A +KT+ + I DAG R GEN QE+ KA L
Sbjct: 32 VLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVTAKAEGLA 91
Query: 77 ---------------------EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIAN 115
E I +H +G LQSNK +L P +D +E V + +A
Sbjct: 92 RRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAE 148
Query: 116 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
+ + G + VL++VN SGEESKSG DP+ + I + + +E GL TIG
Sbjct: 149 KISRRAVARG-ITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGT-LDGIELQGLXTIG 205
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 31 TQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVG 85
+QEQ + + T PV+ ++V+D + F ENY I+D P+++ HF G
Sbjct: 1681 SQEQGMGMDLYATSPVA--KEVWDRADKHFRENYGFSIIDIVKNNPKELTVHFGG 1733
>pdb|3OIR|A Chain A, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|3OIR|B Chain B, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|4DGF|A Chain A, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
pdb|4DGF|B Chain B, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
Length = 135
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS 122
L S + L G + +E +G E++ +H+DKA++
Sbjct: 88 LLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALA 123
>pdb|1J7X|A Chain A, Crystal Structure Of A Functional Unit Of
Interphotoreceptor Retinoid-Binding Protein (Irbp)
Length = 302
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVL 132
S + TLL +PNLD + E IA L+ + +L P VL
Sbjct: 22 SERIPTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVL 65
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 58 RSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL 117
+ F + V++++DK PQ D HF L + LLG L+ + VG I +L
Sbjct: 118 QPFVRSTVEQLIDKLPQGDFDFVQHFAHPLPALVMCQLLGF--PLEDYDTVGRLSIETNL 175
Query: 118 DKAVSN 123
A+SN
Sbjct: 176 GLALSN 181
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 72 APQLPEDIKWHFV 84
AP LP D KWHF+
Sbjct: 109 APALPRDKKWHFI 121
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 20 RVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQV--YDAGHRSF-------GENYV---QE 67
R+ + R+ I VVAV+ T + + + YD+ H G N V +E
Sbjct: 11 RIGRNVFRAALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Query: 68 IVDKAPQLPEDIKWHFVG 85
I+ KA + PE++ W +G
Sbjct: 71 IIVKAERDPENLAWGEIG 88
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
Length = 1124
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 33 EQIRVV-AVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDI 79
E+ RV+ A K+K L+RQ D+ + F N +QEI+D+ ++P +I
Sbjct: 9 ERWRVIEAYFKSK--GLVRQHLDS-YNDFVRNKLQEIIDEQGEIPTEI 53
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 58 RSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL 117
+ F + V++++DK PQ D HF L + LLG L+ + VG I +L
Sbjct: 128 QPFVRSTVEQLIDKLPQGDFDFVQHFPHPLPALVMCQLLGF--PLEDYDTVGRLSIETNL 185
Query: 118 DKAVSN 123
A+SN
Sbjct: 186 GLALSN 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,819,929
Number of Sequences: 62578
Number of extensions: 236465
Number of successful extensions: 663
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 31
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)