BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028985
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 113/171 (66%), Gaps = 9/171 (5%)
Query: 12 TALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIV 69
ALR+V RV+QA R R I R+VAVSKTKP ++ + Y G R+FGENYVQE++
Sbjct: 15 CALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELL 74
Query: 70 DKAPQ-----LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL 124
+KA L +IKWHF+GHLQ L+ VPNL M+E V + K+A+ ++ +
Sbjct: 75 EKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRK 133
Query: 125 GR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
G + LKV+VQ+NTSGEESK G+ PS + IVEH+ +CPNLEF GLMTIG
Sbjct: 134 GSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG 184
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 119/179 (66%), Gaps = 11/179 (6%)
Query: 5 TVEGAAVTALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGE 62
T E ALR+V RV+Q+ R R I R+VAVSKTKP ++ + Y G R+FGE
Sbjct: 8 TAELGVGFALRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGE 67
Query: 63 NYVQEIVDKA--PQL----PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANH 116
NYVQE+++KA P++ PE IKWHF+GHLQ L+ VPNL M+E V + K+A+
Sbjct: 68 NYVQELLEKASNPKILSSCPE-IKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADK 125
Query: 117 LDKAVSNLG-RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
++ + G +PLKV+VQ+NTSGE+SK G+ PS + +VEH++ CP+LEF GLMTIG
Sbjct: 126 VNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIG 184
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 11/171 (6%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
ALR+V RV+QA R R I R+VAVSKTKP ++ + Y G R+FGENYVQE+++
Sbjct: 16 ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLE 75
Query: 71 KA--PQL----PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL 124
KA PQ+ PE IKWHF+GHLQ L+ VPNL M+E V + K+A+ ++ A
Sbjct: 76 KASNPQILSSCPE-IKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKK 133
Query: 125 GR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
G + LKV+VQ+NTSGE SK G+ P+ +VEH+ +CP+LEF GLMTIG
Sbjct: 134 GSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIG 184
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 111/171 (64%), Gaps = 9/171 (5%)
Query: 12 TALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIV 69
ALR+V RV+QA R I R+VAVSKTKP ++ + Y G R+FGENYVQE++
Sbjct: 15 CALRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELL 74
Query: 70 DKAPQ-----LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL 124
+KA L +IKWHF+GHLQ L+ VPNL ++E V + K+A ++ +
Sbjct: 75 EKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKK 133
Query: 125 GR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
G + LKV+VQ+NTSGEESK G+ PS + IVEH+ +CPNLEF GLMTIG
Sbjct: 134 GSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG 184
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 121/193 (62%), Gaps = 18/193 (9%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
+++ +++ RV + + R +++VAVSKTKP +IR +YD GHR FGENY+QE+V
Sbjct: 11 ISSYKNIKDRVEIISNKFDR--HNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVS 68
Query: 71 KAPQLPE--DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKA-------- 120
K+ +L E +IKWHF+G +QSNK+K +L V NL +VE V N+KI + L K+
Sbjct: 69 KSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENN 127
Query: 121 --VSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV--RLRCPN-LEFSGLMTIGM 175
+N K L +++QVNTSGEESKSG P CL +V+H C N L F GLMTIG
Sbjct: 128 NNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGN 187
Query: 176 PDYTSTPENFRVM 188
P+ T +F+ +
Sbjct: 188 PNATPDQPDFKCL 200
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKA 72
+L +++ V A S T+ + R+VAVSKTK LI Y R FGENYVQE+ +K+
Sbjct: 9 SLFNIIEAVADAVTASQATK-RCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKS 67
Query: 73 PQLPE---DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK-- 127
L DI+WHF+G +QSNK + P L VE V EK A DK S G
Sbjct: 68 DVLASKCLDIRWHFIGQVQSNKIGKICNS-PGLWCVETVETEKHARIFDKEWSKHGANLS 126
Query: 128 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD 177
PL+VLVQVNTSGE++K GI+ + E +R C NL+F G MTIG D
Sbjct: 127 PLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFD 176
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 108/181 (59%), Gaps = 14/181 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDK-- 71
+ + ++R ++ GRT E ++++AVSKTKPV I + Y AG +FGENYVQE V K
Sbjct: 8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQ 67
Query: 72 --APQLPED-IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRK 127
A P++ I+WHF+G +QSNK++ + + D V + KIA L D+ S L K
Sbjct: 68 HFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQRPSEL--K 122
Query: 128 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTSTPENF 185
PL+VL+QVNTSGE SKSG+ + + E + R PNL GLM+I + DY S F
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELIS-RLPNLTLRGLMSIPANVSDYESQLHEF 181
Query: 186 R 186
+
Sbjct: 182 Q 182
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 102/175 (58%), Gaps = 16/175 (9%)
Query: 20 RVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKA------- 72
++ A ++ GR + ++++AVSKTKPV I + AG R FGENYVQE VDK
Sbjct: 14 QIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHH 73
Query: 73 PQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVL 132
PQL ++WHF+G LQSNK + + + D V + EKIA L + + PL+VL
Sbjct: 74 PQLA--LEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQ-RPVNMPPLQVL 127
Query: 133 VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTSTPENF 185
+QVNTSGE SKSGI+P + E + R PNL GLM+I +PDY + F
Sbjct: 128 IQVNTSGEASKSGIEPQQLFTLAELIS-RLPNLTLRGLMSIPENVPDYPAQLAAF 181
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
++ + S L +R ++S + + +VAVSK PV + + Y+AG R FGENY+QE +
Sbjct: 1 MSTIHSCLDLIRSQIQQSANGR-NVLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLK 59
Query: 71 KAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
K +P+D++WHF+G LQS+K K + V NL +E + EK A ++ A L + PL
Sbjct: 60 KVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLN 117
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
V +QVNTSGEE+K G+ PS L + + V+ L GLMTIG
Sbjct: 118 VYIQVNTSGEENKGGVTPSKVLELCKQVQ-DMKYLRLKGLMTIG 160
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L + ++ A + R Q ++++AVSKTKP+S I Y AG +FGENYVQE V+K
Sbjct: 7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQ 66
Query: 74 QLPE---DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
+++WHF+G LQSNK + + + D ++ + KIA+ L++ + PL
Sbjct: 67 YFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLN 122
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTSTPEN-FRVM 188
VL+Q+N S EESKSGI P L + +H+ P+L GLM I P D + EN FR M
Sbjct: 123 VLIQINISDEESKSGIQPEEMLTLAKHIE-NLPHLCLRGLMAIPAPTDNIAEQENAFRKM 181
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 10/186 (5%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L + ++ A +++ R + ++++AVSKTKPV I Q Y AG +FGENYVQE V+K
Sbjct: 7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQ 66
Query: 74 QLPED---IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
+ ++WHF+G LQSNK K + + D ++ + +KIA+ L++ + +KPL
Sbjct: 67 YFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQRPHY-KKPLN 122
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRVM 188
VL+Q+N S E+SKSGI P+ L + + ++ P+L GLM I P D + + F M
Sbjct: 123 VLIQINISDEDSKSGIQPNEMLDLAKQIQ-NLPHLCLRGLMAIPAPTDDLATQEQAFTQM 181
Query: 189 DFSFRR 194
F +
Sbjct: 182 HSLFEQ 187
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 107/180 (59%), Gaps = 12/180 (6%)
Query: 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIV 69
A L VL R+++A ER+GR + +++ SKT P +IR+ Y+ G + +GEN VQE +
Sbjct: 3 ACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFL 62
Query: 70 DKAPQLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV--SNLGR 126
K L + D++WHF+G LQ+NK K L+G V ++ + + +A+ + K +N+ +
Sbjct: 63 KKYEALKDLDLEWHFIGRLQTNKVKYLMGKVV---LIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 127 KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFR 186
VL++VN GEE+K G++P + + E+ L PN++ GLMTI P Y PE+ R
Sbjct: 120 ---DVLIEVNVGGEETKGGVEPENLKELFEYT-LELPNVKVLGLMTI--PPYLENPEDVR 173
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 34 QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
+I ++ VSK KP S I+ +YD G R FGENYVQE+++KA LP+DIKWHF+G LQ+NK K
Sbjct: 41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
L VPNL VE + + K A L+++ + P+ VQ+NTS E+ KSG++ +
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 159
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIG 174
+ V L C ++ +GLMTIG
Sbjct: 160 IFEVIDFFLSEECKYIKLNGLMTIG 184
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 99/186 (53%), Gaps = 13/186 (6%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFR 186
L VL+Q+N S E SKSGI + + V P L GLM I P +Y E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPESEYVRQFEVAR 181
Query: 187 VMDFSF 192
M +F
Sbjct: 182 QMAVAF 187
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 99/186 (53%), Gaps = 13/186 (6%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFR 186
L VL+Q+N S E SKSGI + + V P L GLM I P +Y E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPESEYVRQFEVAR 181
Query: 187 VMDFSF 192
M +F
Sbjct: 182 QMAVAF 187
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 99/186 (53%), Gaps = 13/186 (6%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFR 186
L VL+Q+N S E SKSGI + + V P L GLM I P +Y E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPESEYVRQFEVAR 181
Query: 187 VMDFSF 192
M +F
Sbjct: 182 QMAVAF 187
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 17 VLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP 76
V R+R+AA+ +GR + ++AVSKTKP + +R+ + AG R FGENY+QE + K +L
Sbjct: 11 VAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELA 70
Query: 77 E-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV 135
+ + WHF+G +QSNK + + + V V KIA L + G PL V +QV
Sbjct: 71 DLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQV 126
Query: 136 NTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 176
N SGE SKSG P + E V+ + PNL GLM I P
Sbjct: 127 NVSGEASKSGCAPEDLPALAEAVK-QLPNLRLRGLMAIPEP 166
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 9/147 (6%)
Query: 33 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSN 90
++I+++AVSK + + I+ +G FGENYVQE +DK +L ++I WHF+G +QSN
Sbjct: 27 KKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQSN 86
Query: 91 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS 150
K K + N D + + EKIA L+K P+ VL+Q+N S E +K+GI +
Sbjct: 87 KTKII---AENFDWCQTIDREKIAILLNKYREKKSF-PMNVLMQINISNEVTKNGICIKN 142
Query: 151 CLGIVEHVRLRCPNLEFSGLMTIGMPD 177
+ + + L PNL F G+M MP+
Sbjct: 143 YKKLAKTISL-MPNLNFRGIMM--MPE 166
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
+ AL + + + R A R +++VAVSK I+ Y+ R+FGEN VQ++
Sbjct: 8 IDALITKIEKARTAYSR----HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 71 KAPQLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPL 129
K L ++WH +G LQ NK LL P L + + + K+A ++K LG L
Sbjct: 64 KMHSLEHLPLEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-L 120
Query: 130 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
L+QVN++ EESKSG+ P L I + C +L+ GLM IG
Sbjct: 121 NALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIG 165
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 35 IRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE-DIKWHFVGHLQSNKAK 93
+++VAVSK I+ Y+ R+FGEN VQ++ K L ++WH +G LQ NK
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKIN 87
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLG 153
LL P L + + + K+A ++K LG L L+QVN++ EESKSG+ P L
Sbjct: 88 ALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALE 144
Query: 154 IVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENF 185
+ C L+ GLM IG D T ++F
Sbjct: 145 TYSQISETCKRLKLKGLMCIGAHTDDETKIEKSF 178
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 79/147 (53%), Gaps = 19/147 (12%)
Query: 35 IRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSNKA 92
+R+VAV+KTK ++ I Y AG R F E+ +QE + K L +DI WHF+G LQSNKA
Sbjct: 18 VRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQSNKA 77
Query: 93 KTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCL 152
+ + V N + V N IA LD+ L + P + L+Q+ +E+KSG
Sbjct: 78 RKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSG------- 126
Query: 153 GIVEHVRLRCP------NLEFSGLMTI 173
E ++L P NL+ GLMTI
Sbjct: 127 WTREELKLDLPQLELLKNLKICGLMTI 153
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
V LR + R+ +A RSGR+ +++ V+AV+K ++ DAG GEN E++
Sbjct: 4 VDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLR 63
Query: 71 KAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
K + + +WHF+G LQS KAK+++ V + ++ + L K + ++
Sbjct: 64 KQELMKGNPEWHFIGSLQSRKAKSVVNSVSYIHSLDRLS-------LAKEIEKRAEGTVR 116
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174
VQVNTS E SK G+ + ++ + ++ +GLMT+
Sbjct: 117 CFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMA 159
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 33 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSN 90
++I ++AVSK + ++ I + +G +FGENY+QE + K L ++I WHF+G +QSN
Sbjct: 2 KKITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSN 61
Query: 91 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAV-SNLGRKPLKVLVQVNTSGE-ESKSGIDP 148
K K + N + V EKIA L+K NL P+ VL+Q+N E ++ ID
Sbjct: 62 KTKKI---AQNFSWCQTVDREKIAVLLNKFRPKNLP--PINVLIQINNLKELQNNRYIDQ 116
Query: 149 SSCLGIVEHVRLRCPNLEFSGLMTI 173
L + L PNL G+M +
Sbjct: 117 YQELA---QLILSMPNLNLRGIMAV 138
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 16 SVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIR-QVYDAGHRSFGENYVQEIVDKAPQ 74
+VL +R+A ++GR +R+VAV+K + IR QV G EN QE+ DK
Sbjct: 5 AVLAGIREAEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQELRDKVAG 64
Query: 75 LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQ 134
LP +WHF+G LQ NK K L G + +V + A + A + G+ P +L +
Sbjct: 65 LP-GAEWHFIGPLQRNKIKYLRG----VTLVHSIEEPWQAQAIADAAAEWGQAPAVLLQR 119
Query: 135 VNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRR 194
N GE K G+ P ++ V R LE GLM M Y +V + R+
Sbjct: 120 HN--GEGQKHGVLPDDLPAVLREV--RATGLEVRGLMA--MAPYDDEARAAQVFADTARQ 173
Query: 195 AHVL 198
A L
Sbjct: 174 AQDL 177
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
++ + ++ +++ ++I+++AVSK + V+ I++ G SFGENYVQE K
Sbjct: 8 IKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPKI- 66
Query: 74 QLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLV 133
+L +I+WH++G +QSNKA + N + N+K A L+K L L+
Sbjct: 67 KLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKYRP-YSLPKLNTLI 122
Query: 134 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTST 181
Q+N D + + + + NL G+M MP + +T
Sbjct: 123 QINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNT 167
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 19/198 (9%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKA 72
AL +V R+ A++ +GR +I ++ +SK P + + + G RS GE+ QE KA
Sbjct: 18 ALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKA 77
Query: 73 PQLPE----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS 122
+ E I WH VG +Q NK ++L ++ + + A
Sbjct: 78 AEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAAL 137
Query: 123 NLGRK--PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR---CPNLEFSGLMTIGMPD 177
GR+ PL+V VQ++ G+ S+ G++ ++ G V+ V + +LE GLM G+P
Sbjct: 138 AGGRREQPLQVYVQISLDGDISRGGVNVTAP-GAVDRVCAQVEESKSLELVGLM--GIPP 194
Query: 178 YTSTPEN-FRVMDFSFRR 194
P+ F + RR
Sbjct: 195 LGWNPDQAFEQLRLEHRR 212
>sp|O24748|Y2153_CORGL UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl2153 PE=3 SV=2
Length = 221
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 20 RVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDI 79
R+ R + +R++ V+K PV I+ + + G + GEN QE KA +LP D+
Sbjct: 4 RIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP-DM 62
Query: 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS------NLGRKPLKVLV 133
+H +G +QS KA ++ V V +EKIA L + V+ + L +
Sbjct: 63 DFHMIGQIQSKKANSIARWAA---AVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFI 119
Query: 134 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 173
Q++ G+ S+ G S + + + +L F GLM +
Sbjct: 120 QLSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCV 158
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 2 AAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFG 61
A P E AL ++ R+ AAE +GR +I ++ ++K P + + ++ G RS G
Sbjct: 7 AYPDRESELTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVG 66
Query: 62 ENYVQEIVDKAPQLPE-----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN 110
E+ QE K +L + WH VG +Q NKA +L V +
Sbjct: 67 ESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSL---ARWAHTAHSVDS 123
Query: 111 EKIANHLDKA-VSNLGR----KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR---C 162
++ LD+A V+ L + L+V VQV+ G+ S+ G+D S+ G V+ + +
Sbjct: 124 SRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVD-STTPGAVDRICAQVQES 182
Query: 163 PNLEFSGLMTIGMPDYTSTPE 183
LE GLM G+P P+
Sbjct: 183 EGLELVGLM--GIPPLDWDPD 201
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 2 AAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFG 61
A P E AL ++ R+ AAE +GR +I ++ ++K P + + ++ G RS G
Sbjct: 7 AYPDRESELTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVG 66
Query: 62 ENYVQEIVDKAPQLPE-----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN 110
E+ QE K +L + WH VG +Q NKA +L V +
Sbjct: 67 ESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSL---ARWAHTAHSVDS 123
Query: 111 EKIANHLDKA-VSNLGR----KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR---C 162
++ LD+A V+ L + L+V VQV+ G+ S+ G+D S+ G V+ + +
Sbjct: 124 SRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVD-STTPGAVDRICAQVQES 182
Query: 163 PNLEFSGLMTIGMPDYTSTPE 183
LE GLM G+P P+
Sbjct: 183 EGLELVGLM--GIPPLDWDPD 201
>sp|B3EPX5|RIMO_CHLPB Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
phaeobacteroides (strain BS1) GN=rimO PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170
E I ++LD V ++ + L + K GID +G++E +R R PN+
Sbjct: 249 ENICDYLDMPVQHICDRILASM----------KRGIDKQGTIGLLESIRKRNPNIRLRTT 298
Query: 171 MTIGMPDYT 179
M +G P T
Sbjct: 299 MIVGYPGET 307
>sp|Q3MAX6|HIS82_ANAVT Histidinol-phosphate aminotransferase 2 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=hisC2 PE=3 SV=1
Length = 380
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 70 DKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPL 129
D P+L + + W F ++SN+ GG L + IA +++++ +N+ P+
Sbjct: 42 DLPPELKQKLAWTFQQVIESNRYPD--GGHEEL-------KDAIAQYVNES-ANISSSPI 91
Query: 130 KVL-VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM--TIGMPDYTST--PEN 184
+ V +E + ++CLG + + P G++ T+G+P T + PEN
Sbjct: 92 TAANISVGNGSDELIRSLLIATCLGAQGSILVANPTFSMYGILAQTLGIPVVTVSRNPEN 151
Query: 185 FRV 187
F +
Sbjct: 152 FEI 154
>sp|B4S8Z6|RIMO_PROA2 Ribosomal protein S12 methylthiotransferase RimO
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=rimO PE=3 SV=1
Length = 433
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 113 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 172
I N+LD V ++ + LK + + GID +G++E +R + P++ M
Sbjct: 244 ICNYLDMPVQHISDRILKSM----------QRGIDKKGTIGLLESIRKKNPDIRLRTTMI 293
Query: 173 IGMPDYTS 180
+G P T
Sbjct: 294 VGYPGETD 301
>sp|Q8V294|POLN_EEVVC Non-structural polyprotein OS=Venezuelan equine encephalitis virus
(strain CPA201) PE=2 SV=2
Length = 2496
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 4 PTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGEN 63
PT+ A +A+++ L V AA + Q+R + V + ++ A + + E
Sbjct: 2069 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2128
Query: 64 YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV 121
Y + + +L E+ +++ L+ KA L NLDM++ + ++ L + V
Sbjct: 2129 YKKNPI----RLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDV 2182
>sp|Q9WJC7|POLN_EEVVM Non-structural polyprotein OS=Venezuelan equine encephalitis virus
(strain Mena II) PE=2 SV=2
Length = 2498
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 4 PTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGEN 63
PT+ A +A+++ L V AA + Q+R + V + ++ A + + E
Sbjct: 2071 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2130
Query: 64 YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV 121
Y + + +L E+ +++ L+ KA L NLDM++ + ++ L + V
Sbjct: 2131 YKKNPI----RLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDV 2184
>sp|Q5NCI0|URGCP_MOUSE Up-regulator of cell proliferation OS=Mus musculus GN=Urgcp PE=2
SV=1
Length = 926
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 26 ERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVG 85
ERS R QE + ++ + + L Q D+ SF + + APQ+P+D+ WHF+
Sbjct: 69 ERS-RLQEMLSLLGLETYQAQKLTLQ--DSLQISF-----DSMKNWAPQVPKDLPWHFLR 120
Query: 86 HLQSNKAKT 94
LQ+ A+
Sbjct: 121 KLQALNAEA 129
>sp|P37415|YTL2_SALTY Uncharacterized protein pSLT051 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=PSLT051 PE=3 SV=1
Length = 313
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEI 68
AA+T L+ +H+ R AE R + +S ++ +SL+ + AG S E +V+E+
Sbjct: 175 AALTLLQKHIHQ-RDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVREL 233
Query: 69 VDKAPQ 74
+ PQ
Sbjct: 234 AQRVPQ 239
>sp|A8MLX7|RIMO_ALKOO Ribosomal protein S12 methylthiotransferase RimO OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rimO PE=3 SV=1
Length = 438
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 2 AAPTVEGAAVT-ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSF 60
A P ++G ++ + +L R A++ + ++ V+A TK G +
Sbjct: 155 AIPNIQGPYISRTMEDILKEARNLAKQGIK---ELIVIAQDTTK----------YGLDIY 201
Query: 61 GENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVG-NEKIANHLDK 119
GE + +++++ ++ EDI+W ++ ++++ VG N+KI N+ D
Sbjct: 202 GEARLPQLLEELCKI-EDIEWVRFLYVYPESITD--------ELIKVVGENDKICNYFDI 252
Query: 120 AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT 179
+ ++ LK + KS D +S I+E +R P++ + +G P
Sbjct: 253 PIQHISDSVLKRM--------NRKS--DGASVRNIIEKIRREIPDVIIRTTLIVGFP--G 300
Query: 180 STPENFR 186
T E+F+
Sbjct: 301 ETEEDFK 307
>sp|Q8XHQ0|DISA_CLOPE DNA integrity scanning protein DisA OS=Clostridium perfringens
(strain 13 / Type A) GN=disA PE=3 SV=1
Length = 354
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 68 IVDKAPQLPEDIKWHFVGHLQSNKAKTLL-GGVPNLDMVEGVG 109
I +K P++P ++ + VGH K K +L G LD VEG+G
Sbjct: 290 ISNKVPRIPSNVIENLVGHF--GKLKYILEAGNEELDQVEGIG 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,946,261
Number of Sequences: 539616
Number of extensions: 3041194
Number of successful extensions: 8564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8477
Number of HSP's gapped (non-prelim): 52
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)