Query 028985
Match_columns 200
No_of_seqs 149 out of 1049
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 1.9E-42 4E-47 284.6 19.9 182 9-195 2-187 (228)
2 cd06822 PLPDE_III_YBL036c_euk 100.0 1.1E-40 2.4E-45 277.9 20.9 180 10-194 1-186 (227)
3 TIGR00044 pyridoxal phosphate 100.0 8.8E-38 1.9E-42 260.8 21.4 182 8-194 2-187 (229)
4 cd06824 PLPDE_III_Yggs_like Py 100.0 1.5E-37 3.3E-42 258.4 20.5 177 9-190 1-181 (224)
5 KOG3157 Proline synthetase co- 100.0 3.4E-35 7.4E-40 236.9 18.6 187 1-191 1-191 (244)
6 cd00635 PLPDE_III_YBL036c_like 100.0 4.2E-34 9.1E-39 237.1 20.2 179 10-193 1-182 (222)
7 cd06815 PLPDE_III_AR_like_1 Ty 100.0 2.9E-31 6.3E-36 234.1 18.3 173 10-194 4-184 (353)
8 PF01168 Ala_racemase_N: Alani 100.0 1E-30 2.2E-35 215.0 18.1 170 13-196 2-181 (218)
9 COG0787 Alr Alanine racemase [ 100.0 3.3E-30 7.3E-35 226.6 18.2 161 11-186 8-183 (360)
10 cd06825 PLPDE_III_VanT Type II 100.0 3.4E-29 7.3E-34 222.2 18.6 169 11-197 5-189 (368)
11 PRK03646 dadX alanine racemase 100.0 7.5E-29 1.6E-33 219.1 19.3 163 10-190 6-180 (355)
12 cd06826 PLPDE_III_AR2 Type III 100.0 8E-28 1.7E-32 213.1 20.2 169 11-192 5-186 (365)
13 TIGR00492 alr alanine racemase 100.0 1E-27 2.2E-32 212.2 20.0 173 11-196 6-192 (367)
14 PRK11930 putative bifunctional 100.0 1.2E-27 2.7E-32 230.7 21.4 175 7-195 459-648 (822)
15 PRK00053 alr alanine racemase; 100.0 7.5E-27 1.6E-31 206.5 19.8 171 11-196 7-191 (363)
16 cd00430 PLPDE_III_AR Type III 99.9 3.9E-26 8.5E-31 201.8 21.5 173 12-196 6-190 (367)
17 cd06827 PLPDE_III_AR_proteobac 99.9 2.2E-26 4.7E-31 203.3 19.1 163 11-191 5-181 (354)
18 cd06817 PLPDE_III_DSD Type III 99.9 8.9E-26 1.9E-30 201.7 18.7 162 11-178 10-181 (389)
19 PRK13340 alanine racemase; Rev 99.9 3.3E-25 7.2E-30 198.9 20.5 170 10-192 43-225 (406)
20 cd06820 PLPDE_III_LS_D-TA_like 99.9 1.5E-25 3.3E-30 197.1 16.7 158 12-178 8-169 (353)
21 cd07376 PLPDE_III_DSD_D-TA_lik 99.9 7E-25 1.5E-29 192.3 16.6 153 17-177 2-159 (345)
22 cd06821 PLPDE_III_D-TA Type II 99.9 9.6E-25 2.1E-29 192.5 16.8 158 11-176 13-174 (361)
23 cd06814 PLPDE_III_DSD_D-TA_lik 99.9 1.2E-23 2.6E-28 187.5 18.0 156 11-176 13-179 (379)
24 cd06819 PLPDE_III_LS_D-TA Type 99.9 8.9E-23 1.9E-27 179.7 16.1 156 12-176 12-171 (358)
25 cd06808 PLPDE_III Type III Pyr 99.9 1.3E-21 2.8E-26 159.3 19.9 171 17-196 1-179 (211)
26 cd06811 PLPDE_III_yhfX_like Ty 99.9 1.6E-21 3.4E-26 174.0 20.1 173 11-196 32-225 (382)
27 cd06818 PLPDE_III_cryptic_DSD 99.9 2.5E-21 5.5E-26 172.5 18.4 176 12-193 8-195 (382)
28 cd06813 PLPDE_III_DSD_D-TA_lik 99.9 8.6E-21 1.9E-25 169.5 20.1 155 12-176 16-184 (388)
29 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 1.3E-20 2.7E-25 167.0 18.1 156 12-176 11-170 (374)
30 COG3457 Predicted amino acid r 99.8 2.6E-18 5.6E-23 147.1 17.6 170 10-191 6-183 (353)
31 cd06810 PLPDE_III_ODC_DapDC_li 99.8 6.2E-18 1.3E-22 149.2 18.1 168 12-194 6-194 (368)
32 cd06828 PLPDE_III_DapDC Type I 99.8 7.1E-17 1.5E-21 142.6 20.8 155 12-177 8-179 (373)
33 cd06842 PLPDE_III_Y4yA_like Ty 99.7 1.7E-16 3.8E-21 143.3 19.6 155 14-177 17-179 (423)
34 cd00622 PLPDE_III_ODC Type III 99.7 2.8E-16 6.1E-21 138.6 19.4 170 12-199 7-193 (362)
35 COG3616 Predicted amino acid a 99.7 1.5E-16 3.2E-21 140.6 16.2 160 10-178 21-185 (368)
36 cd06843 PLPDE_III_PvsE_like Ty 99.7 7.8E-16 1.7E-20 136.8 20.8 153 13-177 8-176 (377)
37 cd06841 PLPDE_III_MccE_like Ty 99.7 6.9E-16 1.5E-20 137.2 18.9 158 13-178 13-179 (379)
38 TIGR01048 lysA diaminopimelate 99.7 8.6E-16 1.9E-20 138.0 18.9 154 13-177 31-201 (417)
39 cd06839 PLPDE_III_Btrk_like Ty 99.7 9E-16 1.9E-20 136.1 18.2 152 13-176 13-180 (382)
40 PLN02537 diaminopimelate decar 99.7 2.4E-15 5.2E-20 135.1 20.6 153 13-177 24-194 (410)
41 TIGR03099 dCO2ase_PEP1 pyridox 99.6 2.6E-14 5.6E-19 127.8 20.0 151 13-176 31-196 (398)
42 PRK11165 diaminopimelate decar 99.2 2.9E-09 6.2E-14 96.3 17.6 144 13-177 32-195 (420)
43 cd06830 PLPDE_III_ADC Type III 98.9 9.7E-07 2.1E-11 79.7 21.7 167 7-177 12-197 (409)
44 cd06836 PLPDE_III_ODC_DapDC_li 98.8 6E-07 1.3E-11 80.2 18.8 150 13-176 9-177 (379)
45 PF02784 Orn_Arg_deC_N: Pyrido 98.8 1.9E-07 4.2E-12 78.6 13.7 148 14-176 2-166 (251)
46 COG0019 LysA Diaminopimelate d 98.8 9.9E-07 2.1E-11 79.4 18.3 152 14-178 34-202 (394)
47 cd06831 PLPDE_III_ODC_like_AZI 98.7 1.5E-06 3.3E-11 78.1 18.0 147 13-177 19-176 (394)
48 cd06840 PLPDE_III_Bif_AspK_Dap 98.6 3.5E-06 7.7E-11 75.0 17.5 159 13-190 18-194 (368)
49 TIGR01047 nspC carboxynorsperm 98.6 4.5E-06 9.7E-11 74.7 17.9 159 14-192 10-182 (380)
50 PRK08961 bifunctional aspartat 98.5 4.4E-06 9.6E-11 81.9 17.1 159 13-190 509-685 (861)
51 PRK05354 arginine decarboxylas 98.4 0.00011 2.3E-09 70.0 23.0 167 8-177 72-256 (634)
52 TIGR01273 speA arginine decarb 98.4 6.5E-05 1.4E-09 71.3 21.3 168 7-177 64-249 (624)
53 cd06829 PLPDE_III_CANSDC Type 98.3 7.8E-05 1.7E-09 65.8 17.0 156 13-190 7-176 (346)
54 PLN02439 arginine decarboxylas 98.2 0.00099 2.1E-08 62.7 22.4 167 8-177 7-193 (559)
55 KOG0622 Ornithine decarboxylas 97.6 0.0033 7.1E-08 56.6 15.5 149 13-177 62-219 (448)
56 COG0386 BtuE Glutathione perox 77.5 5 0.00011 31.8 4.6 35 131-170 27-63 (162)
57 TIGR00612 ispG_gcpE 1-hydroxy- 69.4 71 0.0015 28.5 10.3 148 38-192 25-191 (346)
58 TIGR03693 ocin_ThiF_like putat 64.8 1.3E+02 0.0027 29.2 11.7 78 46-126 142-232 (637)
59 PRK00694 4-hydroxy-3-methylbut 58.8 1.7E+02 0.0038 28.1 12.3 79 111-195 144-230 (606)
60 PRK02048 4-hydroxy-3-methylbut 55.3 2E+02 0.0044 27.7 11.3 139 47-195 45-226 (611)
61 TIGR00696 wecB_tagA_cpsF bacte 54.9 79 0.0017 25.3 7.5 58 105-177 28-85 (177)
62 PF03514 GRAS: GRAS domain fam 53.4 39 0.00084 30.3 6.1 61 130-198 111-175 (374)
63 cd01573 modD_like ModD; Quinol 52.5 76 0.0017 27.2 7.5 72 37-112 185-261 (272)
64 COG0269 SgbH 3-hexulose-6-phos 51.8 1.4E+02 0.0031 24.9 10.6 65 20-88 46-118 (217)
65 TIGR02356 adenyl_thiF thiazole 49.1 85 0.0019 25.3 7.0 80 44-126 32-137 (202)
66 PRK00366 ispG 4-hydroxy-3-meth 48.5 1.6E+02 0.0035 26.5 9.0 94 38-138 33-140 (360)
67 PRK07428 nicotinate-nucleotide 43.7 1.7E+02 0.0036 25.5 8.2 85 16-107 181-270 (288)
68 COG0821 gcpE 1-hydroxy-2-methy 41.8 91 0.002 27.9 6.3 96 36-138 25-133 (361)
69 TIGR02355 moeB molybdopterin s 39.8 1.2E+02 0.0026 25.3 6.6 80 44-126 35-140 (240)
70 PRK05690 molybdopterin biosynt 39.2 1.1E+02 0.0025 25.5 6.4 80 44-126 43-148 (245)
71 TIGR01125 MiaB-like tRNA modif 39.1 2.1E+02 0.0046 25.9 8.6 66 129-197 246-316 (430)
72 PHA01627 DNA binding protein 39.0 1.1E+02 0.0024 22.7 5.5 53 82-138 21-73 (107)
73 PRK07329 hypothetical protein; 38.2 2.2E+02 0.0048 23.6 8.0 74 112-197 165-240 (246)
74 PLN02925 4-hydroxy-3-methylbut 38.1 4.1E+02 0.0089 26.3 11.5 75 116-196 214-296 (733)
75 cd06533 Glyco_transf_WecG_TagA 37.9 2E+02 0.0043 22.6 8.0 55 103-170 24-78 (171)
76 COG2100 Predicted Fe-S oxidore 37.1 3.2E+02 0.0069 24.7 8.9 61 108-176 141-201 (414)
77 PRK14331 (dimethylallyl)adenos 36.0 1.8E+02 0.0038 26.5 7.6 64 129-196 256-325 (437)
78 PRK14336 (dimethylallyl)adenos 35.4 2.3E+02 0.005 25.6 8.2 65 129-196 235-304 (418)
79 PF00682 HMGL-like: HMGL-like 34.4 81 0.0018 25.7 4.8 73 111-193 107-180 (237)
80 COG3412 Uncharacterized protei 34.2 2.1E+02 0.0046 21.9 6.5 60 102-165 3-62 (129)
81 PRK14862 rimO ribosomal protei 34.2 2.1E+02 0.0046 26.0 7.9 65 130-197 258-327 (440)
82 TIGR03619 F420_Rv2161c probabl 34.0 1E+02 0.0023 25.6 5.4 49 14-62 190-244 (246)
83 COG1099 Predicted metal-depend 33.8 1.5E+02 0.0032 25.2 6.0 65 131-198 64-129 (254)
84 PLN02489 homocysteine S-methyl 33.6 2.7E+02 0.006 24.5 8.2 64 104-172 185-249 (335)
85 cd01320 ADA Adenosine deaminas 33.2 3.1E+02 0.0067 23.4 9.2 49 148-198 140-188 (325)
86 PF11823 DUF3343: Protein of u 32.9 1.5E+02 0.0033 19.7 7.8 64 103-172 3-71 (73)
87 cd00757 ThiF_MoeB_HesA_family 31.9 2.6E+02 0.0056 22.8 7.4 80 44-126 32-137 (228)
88 PRK10128 2-keto-3-deoxy-L-rham 31.7 3.3E+02 0.0071 23.3 10.1 114 38-158 72-202 (267)
89 PRK08072 nicotinate-nucleotide 31.5 3.4E+02 0.0073 23.4 9.6 78 15-97 172-251 (277)
90 COG4080 SpoU rRNA Methylase fa 31.4 2E+02 0.0044 22.4 6.0 40 34-73 27-73 (147)
91 smart00633 Glyco_10 Glycosyl h 30.5 3.2E+02 0.0069 22.7 9.1 82 112-199 103-185 (254)
92 PRK14328 (dimethylallyl)adenos 30.0 3.2E+02 0.0069 24.8 8.3 64 129-195 258-326 (439)
93 COG4992 ArgD Ornithine/acetylo 30.0 67 0.0015 29.3 3.7 34 108-145 201-234 (404)
94 PRK08999 hypothetical protein; 29.7 2.4E+02 0.0052 24.0 7.1 28 37-65 228-255 (312)
95 PF03460 NIR_SIR_ferr: Nitrite 29.2 90 0.0019 20.3 3.4 46 110-159 22-67 (69)
96 PRK07328 histidinol-phosphatas 28.7 1.9E+02 0.0041 24.3 6.1 71 112-197 177-252 (269)
97 PRK14330 (dimethylallyl)adenos 28.4 4.5E+02 0.0097 23.8 9.2 65 129-196 251-320 (434)
98 PRK14326 (dimethylallyl)adenos 28.3 4.4E+02 0.0095 24.6 9.0 65 129-196 268-337 (502)
99 COG4090 Uncharacterized protei 28.1 61 0.0013 25.1 2.7 44 128-176 85-130 (154)
100 PRK14333 (dimethylallyl)adenos 27.8 2.5E+02 0.0055 25.6 7.2 65 129-196 266-335 (448)
101 cd01483 E1_enzyme_family Super 27.7 2.6E+02 0.0055 20.7 6.5 65 59-126 49-115 (143)
102 cd01571 NAPRTase_B Nicotinate 27.6 4.1E+02 0.0088 23.0 12.0 145 8-159 88-239 (302)
103 PRK14335 (dimethylallyl)adenos 27.4 2.4E+02 0.0053 25.8 7.1 66 128-196 268-338 (455)
104 PRK06512 thiamine-phosphate py 26.9 3.1E+02 0.0067 22.6 7.0 30 36-65 111-140 (221)
105 PRK07534 methionine synthase I 26.8 3.3E+02 0.0072 24.0 7.5 50 104-155 149-198 (336)
106 cd02654 nuc_hydro_CjNH nuc_hyd 26.5 1.9E+02 0.0041 25.2 5.9 58 130-194 1-59 (318)
107 PF09872 DUF2099: Uncharacteri 26.5 66 0.0014 27.5 2.8 59 49-111 155-221 (258)
108 PRK14339 (dimethylallyl)adenos 26.0 4.7E+02 0.01 23.7 8.6 65 128-196 240-310 (420)
109 PF04748 Polysacc_deac_2: Dive 25.9 2.6E+02 0.0056 23.0 6.3 81 114-197 34-120 (213)
110 PRK00507 deoxyribose-phosphate 25.8 2.3E+02 0.005 23.4 6.0 43 111-159 135-177 (221)
111 PRK14338 (dimethylallyl)adenos 25.4 4.1E+02 0.0088 24.4 8.1 65 129-196 266-335 (459)
112 PF07476 MAAL_C: Methylasparta 25.0 1.7E+02 0.0037 24.8 5.0 81 112-197 51-137 (248)
113 PRK14332 (dimethylallyl)adenos 24.9 5.4E+02 0.012 23.6 9.6 64 129-196 262-331 (449)
114 PRK14340 (dimethylallyl)adenos 24.7 2.5E+02 0.0053 25.8 6.5 66 128-196 258-328 (445)
115 PF11340 DUF3142: Protein of u 24.6 2.7E+02 0.0059 22.6 6.0 45 128-178 43-90 (181)
116 PRK07877 hypothetical protein; 24.5 5.2E+02 0.011 25.5 9.0 89 33-126 108-222 (722)
117 TIGR01574 miaB-methiolase tRNA 24.3 3.9E+02 0.0085 24.2 7.8 65 129-196 258-327 (438)
118 COG0134 TrpC Indole-3-glycerol 24.3 2.4E+02 0.0053 24.1 5.9 104 33-141 44-169 (254)
119 PRK14337 (dimethylallyl)adenos 24.0 4.9E+02 0.011 23.7 8.4 66 128-196 259-329 (446)
120 cd01572 QPRTase Quinolinate ph 24.0 4.5E+02 0.0098 22.3 8.6 82 18-106 169-252 (268)
121 PF11230 DUF3029: Protein of u 23.4 1.4E+02 0.003 27.8 4.5 105 50-167 57-169 (487)
122 PF04273 DUF442: Putative phos 23.3 3E+02 0.0065 20.1 5.6 71 83-164 11-87 (110)
123 PF03808 Glyco_tran_WecB: Glyc 23.3 3.4E+02 0.0074 21.2 6.4 57 104-173 27-83 (172)
124 COG3454 Metal-dependent hydrol 23.1 3.9E+02 0.0084 24.1 7.1 31 146-177 139-169 (377)
125 cd02429 PTH2_like Peptidyl-tRN 23.1 3.1E+02 0.0068 20.4 5.7 45 102-148 56-100 (116)
126 PRK07188 nicotinate phosphorib 23.0 5.5E+02 0.012 22.9 10.6 149 8-167 107-283 (352)
127 cd01492 Aos1_SUMO Ubiquitin ac 22.9 4E+02 0.0087 21.3 6.9 28 101-129 110-138 (197)
128 PRK05588 histidinol-phosphatas 22.8 4.4E+02 0.0095 21.8 8.1 74 112-197 166-241 (255)
129 PRK11377 dihydroxyacetone kina 22.8 4E+02 0.0087 24.8 7.5 62 103-166 3-66 (473)
130 PRK08644 thiamine biosynthesis 22.2 3.7E+02 0.008 21.9 6.6 81 43-126 38-144 (212)
131 PRK00278 trpC indole-3-glycero 21.9 3.9E+02 0.0084 22.5 6.8 27 37-63 161-187 (260)
132 COG4034 Uncharacterized protei 21.4 2.8E+02 0.006 24.3 5.7 81 111-196 117-203 (328)
133 PRK06740 histidinol-phosphatas 21.3 5E+02 0.011 22.8 7.6 74 112-197 239-315 (331)
134 PF08134 cIII: cIII protein fa 20.7 1E+02 0.0022 18.8 2.1 27 168-194 9-35 (44)
135 PRK14325 (dimethylallyl)adenos 20.6 5.9E+02 0.013 23.1 8.2 65 129-196 260-329 (444)
136 PF00113 Enolase_C: Enolase, C 20.4 4.9E+02 0.011 22.7 7.2 83 102-193 70-174 (295)
137 PRK09140 2-dehydro-3-deoxy-6-p 20.4 4.7E+02 0.01 21.2 7.6 24 50-73 98-122 (206)
138 PRK00278 trpC indole-3-glycero 20.3 5.3E+02 0.011 21.7 9.4 98 34-138 49-170 (260)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=284.60 Aligned_cols=182 Identities=44% Similarity=0.643 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCC--CccccccCC
Q 028985 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE--DIKWHFVGH 86 (200)
Q Consensus 9 ~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~--~i~~~~iG~ 86 (200)
.+.+|+..|+++|++.+..+||++..|+|+||+|+++++.|+.++++|++.|||||+||+.+|.+.+++ +|.|||||+
T Consensus 2 ~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~ 81 (228)
T COG0325 2 DIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGP 81 (228)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEech
Confidence 478999999999999999999999999999999999999999999999999999999999999999776 399999999
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
+|+||++.++ ++++++||||+.++|++|++++...++ +++|+||||+++|.+|.|+.|+++.++++.+. .+|+|+
T Consensus 82 LQsNK~k~v~---~~~~~ihSlDr~klA~~l~kra~~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~ 156 (228)
T COG0325 82 LQSNKVKLVA---ENFDWIHSLDRLKLAKELNKRALELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLE 156 (228)
T ss_pred hhhhHHHHHH---hhcceeeecCHHHHHHHHHHHHHhCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCe
Confidence 9999999999 579999999999999999999998887 99999999999999999999999999999998 999999
Q ss_pred EeEEEeecCCCCC--CchHHHHHHHHHHHhc
Q 028985 167 FSGLMTIGMPDYT--STPENFRVMDFSFRRA 195 (200)
Q Consensus 167 ~~GlmTh~a~~~~--~~~~~F~~l~~~~~~~ 195 (200)
++||||++|.+++ +....|+++..+++.-
T Consensus 157 l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l 187 (228)
T COG0325 157 LRGLMTIPPLTDDPEEIFAVFRKLRKLFDEL 187 (228)
T ss_pred EeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998765 4668899999876643
No 2
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=1.1e-40 Score=277.86 Aligned_cols=180 Identities=54% Similarity=0.890 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCCh
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQS 89 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~~ 89 (200)
+..||..|+.+|..+++. |++++++|+||||+|+.+.|++++++|++.|||||+||+.+|.+.++.+|.|||||++|+
T Consensus 1 ~~~~l~~i~~~i~~a~~~--r~~~~v~LvaVsK~~~~~~i~~~~~~G~~~fGENrvQe~~~K~~~l~~~i~wHfIG~LQ~ 78 (227)
T cd06822 1 LIANLKRIRQAVKRASKK--LPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGHLQS 78 (227)
T ss_pred ChHHHHHHHHHHHHHHHh--CCCCCcEEEEEECCCCHHHHHHHHHcCCccccCcHHHHHHHHHHhccCCceEEEECCCch
Confidence 357999999999998877 666789999999999999999999999999999999999999988766799999999999
Q ss_pred HHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhc--CCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHH-HhcCCCeE
Q 028985 90 NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV-RLRCPNLE 166 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~--g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i-~~~~~~l~ 166 (200)
||++.++. +++++++|||||++.++.|+++|.+. |+ +++|+||||+|+|.+|+|+.|+++.++++.+ . ++|+|+
T Consensus 79 NK~k~i~~-~~~~~~ihsvDs~~la~~L~~~a~~~~~~~-~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~-~~~~L~ 155 (227)
T cd06822 79 NKVKKLLK-VPNLYMVETVDSEKLADKLNKAWEKLGERE-PLKVMVQVNTSGEESKSGLEPSEAVELVKHIIE-ECPNLK 155 (227)
T ss_pred hhHHHHhc-cccccEEEecCCHHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCce
Confidence 99999961 13699999999999999999999988 87 9999999999988899999999999999999 5 899999
Q ss_pred EeEEEeecCCCCC---CchHHHHHHHHHHHh
Q 028985 167 FSGLMTIGMPDYT---STPENFRVMDFSFRR 194 (200)
Q Consensus 167 ~~GlmTh~a~~~~---~~~~~F~~l~~~~~~ 194 (200)
+.|||||++.+++ +.++.|+.+.++++.
T Consensus 156 l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~ 186 (227)
T cd06822 156 FSGLMTIGSFGYSLSSGPNPDFLCLVDCRKK 186 (227)
T ss_pred EEEEEeeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999998654 256789988887653
No 3
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=100.00 E-value=8.8e-38 Score=260.83 Aligned_cols=182 Identities=41% Similarity=0.693 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCC--CccccccC
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE--DIKWHFVG 85 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~--~i~~~~iG 85 (200)
..+.+|+..|+.+|+.+|+.++|++++++|+||||+...+.++.++++|+++||||++|||+++.+.+.. .+.||++|
T Consensus 2 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~~~~i~~l~~~G~~~fg~~~~~Ea~~k~~~lr~~~~~~~~~ig 81 (229)
T TIGR00044 2 SDIIHYLEDIKTKIEAANTHVNRNPSKVKLLAVSKTKPASAIQIAYDAGQRAFGENYVQELVEKIKLLEDLGKLEWHFIG 81 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCccccEEcHHHHHHHHHHhcccCCceEEEEC
Confidence 4678999999999999999999998999999999999988887788999999999999999985554322 47899999
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCe
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 165 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l 165 (200)
++|+++...++ ..++++++|||+++++.|++.+.+.|+ +++||||||||+||+|+||.|+++.++++.+. ++|+|
T Consensus 82 ~~q~~~~~~~~---~~~~l~~~vds~~~~~~l~~~a~~~~~-~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~-~~~~l 156 (229)
T TIGR00044 82 PLQSNKDRLVV---ENFDWVHTIDSLKIAKKLNEQREKLQP-PLNVLLQINISDEESKSGIQPEELLELAIQIE-ELKHL 156 (229)
T ss_pred CCcchHHHHHh---hhcCEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCCCHHHHHHHHHHHh-cCCCC
Confidence 99999998777 468999999999999999999998897 99999999998779999999999999999998 99999
Q ss_pred EEeEEEeecCCCCCC--chHHHHHHHHHHHh
Q 028985 166 EFSGLMTIGMPDYTS--TPENFRVMDFSFRR 194 (200)
Q Consensus 166 ~~~GlmTh~a~~~~~--~~~~F~~l~~~~~~ 194 (200)
++.|+|||+++++++ ..+.|+.+.+++++
T Consensus 157 ~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~ 187 (229)
T TIGR00044 157 KLRGLMTIGAPTDSHEDQEENFRFMKLLFWQ 187 (229)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999987653 44677777776543
No 4
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=100.00 E-value=1.5e-37 Score=258.43 Aligned_cols=177 Identities=42% Similarity=0.669 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCC--CccccccCC
Q 028985 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE--DIKWHFVGH 86 (200)
Q Consensus 9 ~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~--~i~~~~iG~ 86 (200)
++.+|++.|+++|...++.+||++++++++||||+||+.++..++++|+++||||+++||+++...+.. .+.|+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~~~G~~~fgva~~~Ea~~k~~~Lr~~g~~~~~~lg~ 80 (224)
T cd06824 1 NIAENLAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGP 80 (224)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCcChHHHHHHHHHHhccCCCeeEEEEcC
Confidence 367899999999999999999988889999999999998885546899999999999999983333222 478999999
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
+|+++....+ ..++++++|||.++++.|++.+.+.|+ +++|||+||||++|+|+||.|+++.++++.+. ++|+|+
T Consensus 81 ~~~~~~~~~~---~~~~~~~~I~s~~~~~~l~~~a~~~g~-~~~v~l~id~~~Gm~R~Gi~~~~~~~~~~~i~-~~~~l~ 155 (224)
T cd06824 81 IQSNKTKLIA---ENFDWVHSVDRLKIAKRLNDQRPAGLP-PLNVCIQVNISGEDSKSGVAPEDAAELAEAIS-QLPNLR 155 (224)
T ss_pred chhhhHHHHH---hhCCEEEecCCHHHHHHHHHHHHhcCC-CCcEEEEEEcCCCCCCCCCCHHHHHHHHHHHh-cCCCCc
Confidence 9998755554 248999999999999999999988887 99999999997779999999999999999998 999999
Q ss_pred EeEEEeecCCCCC--CchHHHHHHHH
Q 028985 167 FSGLMTIGMPDYT--STPENFRVMDF 190 (200)
Q Consensus 167 ~~GlmTh~a~~~~--~~~~~F~~l~~ 190 (200)
++|+|||++++++ +|.+.|..+.+
T Consensus 156 l~Gl~tH~a~~~~~~~q~~~f~~~~~ 181 (224)
T cd06824 156 LRGLMAIPAPTDDEAAQRAAFKRLRQ 181 (224)
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999998765 46688988854
No 5
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=236.90 Aligned_cols=187 Identities=59% Similarity=0.888 Sum_probs=161.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCCCcc
Q 028985 1 MAAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIK 80 (200)
Q Consensus 1 ~~~~~~~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~ 80 (200)
||.+.+.. .-|+.+.+++++...+.+|+.+.++|+||+|++++..|.+++++|+++|||||+||.+++.+.++.+|.
T Consensus 1 Ms~~~~~~---~~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~DI~ 77 (244)
T KOG3157|consen 1 MSAEIVYA---SALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPASLIIEAYDAGQRHFGENYVQELIEKAPLLPDDIK 77 (244)
T ss_pred CchHHHHH---HHHHHHHHHHHHHHHhccccccceEEEEeecCCcHHHHHHHHHcCcChhhHHHHHHHHHhcccCcccce
Confidence 55554443 346677788888877888888889999999999999999999999999999999999999988888899
Q ss_pred ccccCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCC-CCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 81 WHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 81 ~~~iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~-~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
|||||++|+||++.++ .++++..+.|||+.+.|..+++.-.+.|. .+++|+|||||++|.++.|+.|.++.++++++.
T Consensus 78 WHFIG~lQsnK~kkl~-svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i~ 156 (244)
T KOG3157|consen 78 WHFIGHLQSNKCKKLL-SVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHIK 156 (244)
T ss_pred eeeechhhhcccchhc-cCCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCCccccCCCChhhhHHHHHHHH
Confidence 9999999999999998 46888999999999999999998777663 389999999999999999999999999999997
Q ss_pred hcCCCeEEeEEEeecCCCCC---CchHHHHHHHHH
Q 028985 160 LRCPNLEFSGLMTIGMPDYT---STPENFRVMDFS 191 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~~~~---~~~~~F~~l~~~ 191 (200)
..|++|++.|+||+++.+.+ .....|+.+.++
T Consensus 157 ~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~ 191 (244)
T KOG3157|consen 157 SECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKL 191 (244)
T ss_pred HhCCcceeeeeEEeccccccccCCCCccHHHHHHH
Confidence 45999999999999986543 223346666654
No 6
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=100.00 E-value=4.2e-34 Score=237.15 Aligned_cols=179 Identities=44% Similarity=0.668 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCC-CccccccCCCC
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE-DIKWHFVGHLQ 88 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~-~i~~~~iG~~~ 88 (200)
+.+|++++++|++.+++.++|.+++++++||||+||+..+..+.++|+++|||++++||+.+|+.+.. .+.|+++|.++
T Consensus 1 ~~~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~~ 80 (222)
T cd00635 1 IAENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHLQ 80 (222)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCCCcHHHHHHHHHHccCCCceEEEECccc
Confidence 36899999999999999997555689999999999998885567899999999999999999998544 36788889999
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEe
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFS 168 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~ 168 (200)
+++++.++ ++++++++|+|.+.++.|++.+.+.|+ +++|||+||||.+|+|+||.++++.++++.+. ++++|++.
T Consensus 81 ~~~~~~~~---~~~~~~~~v~s~~~l~~l~~~a~~~~~-~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~-~~~~l~~~ 155 (222)
T cd00635 81 TNKVKYAV---RLFDLIHSVDSLKLAEELNKRAEKEGR-VLDVLVQVNIGGEESKSGVAPEELEELLEEIA-ALPNLRIR 155 (222)
T ss_pred cccHHHHH---hhCCEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHHH-cCCCCcEE
Confidence 99999998 446999999999999999999988897 99999999999445999999999999999998 99999999
Q ss_pred EEEeecCCCCCC--chHHHHHHHHHHH
Q 028985 169 GLMTIGMPDYTS--TPENFRVMDFSFR 193 (200)
Q Consensus 169 GlmTh~a~~~~~--~~~~F~~l~~~~~ 193 (200)
|+|||+++.+++ ..+.|+.+.+..+
T Consensus 156 Gi~sh~s~~~~~~~~~~~~~~~~~~~~ 182 (222)
T cd00635 156 GLMTIAPLTEDPEEVRPYFRELRELRD 182 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHH
Confidence 999999987652 3344555555433
No 7
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.98 E-value=2.9e-31 Score=234.07 Aligned_cols=173 Identities=13% Similarity=0.158 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc-CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT-KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa-hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
+..|+++|++|++.+++.++. ++++++||+|+ ||+.++ +.+.++|+++|||++++||+.+|+. +..+ |+++|+
T Consensus 4 l~Idl~al~~Ni~~i~~~~~~--~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~--illlg~ 79 (353)
T cd06815 4 LEINLSKIRHNAKVLVELCKS--RGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGP--KMLLRI 79 (353)
T ss_pred EEEeHHHHHHHHHHHHHHHhh--cCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCCC--EEEECC
Confidence 346788888888888888753 46899999999 598666 8888999999999999999999987 4334 478899
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.++++++.+++ ++++.+++|.++++++++.+.+.|+ +++|||||||| |+|+||.|+++.++++.+. ++++|+
T Consensus 80 ~~~~~~~~~~~----~~~~~~i~s~~~~~~l~~~a~~~~~-~~~vhlkvDtG--m~R~G~~~~e~~~~~~~i~-~~~~l~ 151 (353)
T cd06815 80 PMLSEVEDVVK----YADISLNSELETIKALSEEAKKQGK-IHKIILMVDLG--DLREGVLPEDLLDFVEEIL-KLPGIE 151 (353)
T ss_pred CCHHHHHHHHh----hcceeccChHHHHHHHHHHHHHcCC-ccceEEEEecC--CCccccCHHHHHHHHHHHh-CCCCcE
Confidence 89999999983 6777889999999999999988887 99999999999 9999999999999999998 999999
Q ss_pred EeEEEeecCCCCC--C---chHHHHHHHHHHHh
Q 028985 167 FSGLMTIGMPDYT--S---TPENFRVMDFSFRR 194 (200)
Q Consensus 167 ~~GlmTh~a~~~~--~---~~~~F~~l~~~~~~ 194 (200)
++||||||++.++ . +...|.++.+.+..
T Consensus 152 ~~Gi~tH~~~~~~~~~~~~~~~~~~~~~~~l~~ 184 (353)
T cd06815 152 LVGIGTNLGCYGGVLPTEENMGKLVELKEEIEK 184 (353)
T ss_pred EEecccCccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998654 1 23445555544443
No 8
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.97 E-value=1e-30 Score=215.00 Aligned_cols=170 Identities=22% Similarity=0.345 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQ 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~ 88 (200)
|+++|++|++.+++.+ + +..+++||+|+ ||...+......|+++|||++++||+.+|+.. .+| +++++++
T Consensus 2 dl~al~~Ni~~~~~~~-~--~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g-~~i--l~l~~~~ 75 (218)
T PF01168_consen 2 DLDALRHNIRKIRQRA-G--PGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG-API--LVLGPIP 75 (218)
T ss_dssp EHHHHHHHHHHHHHHH-C--TTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT-SEE--EEESEST
T ss_pred CHHHHHHHHHHHHHHc-C--CCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC-Cce--EEEcCCC
Confidence 6788999999999888 4 36789999998 55555433233369999999999999999987 555 6678899
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEe
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFS 168 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~ 168 (200)
+++++.+++ ++++++|+|.++++.|++.+.+.++ +++|||+|||| |+|.||.|+++.++++.+. .+|++++.
T Consensus 76 ~~~~~~~~~----~~~~~~v~s~~~~~~l~~~~~~~~~-~~~v~l~vdtG--~~R~G~~~~~~~~l~~~i~-~~~~l~l~ 147 (218)
T PF01168_consen 76 PEELEELVE----YNIIPTVDSLEQLEALSKAAKKQGK-PLKVHLKVDTG--MGRLGVRPEELEELAEAIK-ALPNLRLE 147 (218)
T ss_dssp GGGHHHHHH----TTEEEEE-SHHHHHHHHHHHHHHTS-TEEEEEEBESS--SSSSSBECHHHHHHHHHHH-HTTTEEEE
T ss_pred hhhHHHHhh----CcEEEEEchhhHHHHHHHHHHHcCC-ceEEEEeeccc--ccccCCCHHHHHHHHHHHh-cCCCceEe
Confidence 999999993 4999999999999999999999998 99999999999 9999999999999999998 89999999
Q ss_pred EEEeecCCCCCC------chHHHHHHHHHHHhcc
Q 028985 169 GLMTIGMPDYTS------TPENFRVMDFSFRRAH 196 (200)
Q Consensus 169 GlmTh~a~~~~~------~~~~F~~l~~~~~~~~ 196 (200)
|+|||+++++++ |.+.|.++.+.+++.+
T Consensus 148 Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~ 181 (218)
T PF01168_consen 148 GLMTHFAHADDPDYTNQEQFERFRELAEALEKAG 181 (218)
T ss_dssp EEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEeccccccCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998752 6678888888877654
No 9
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.3e-30 Score=226.63 Aligned_cols=161 Identities=19% Similarity=0.320 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-Cccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHF 83 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~ 83 (200)
..|+.+|++|++.+++..+ +.+++||||+ ||+..+ ++++++|++.|||++++||++||+. ++. +| .+
T Consensus 8 ~Idl~Al~~N~~~i~~~~~----~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~I--lv 81 (360)
T COG0787 8 EIDLGALRHNLRALRELAG----PAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPI--LV 81 (360)
T ss_pred EEeHHHHHHHHHHHHHhCC----CcEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCCE--EE
Confidence 4678888888888877764 3799999998 999887 8899999999999999999999999 663 77 44
Q ss_pred c-CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcC
Q 028985 84 V-GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (200)
Q Consensus 84 i-G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~ 162 (200)
+ |.+..+....+. .++++++|.|.++++.+.+.+.+. + +++|||||||| |||+||.|++...++..+. .+
T Consensus 82 L~g~~~~~~~~~~~----~~~l~~~v~s~~ql~~l~~~~~~~-~-~l~vhLkiDTG--M~RlG~~~~e~~~~~~~~~-~~ 152 (360)
T COG0787 82 LEGFFPAEELELAA----AYNLTPVVNSLEQLEALKNAALKN-K-PLKVHLKIDTG--MNRLGLRPEEAVALAIDLI-AL 152 (360)
T ss_pred EcCcCChhhHHHHH----HcCCeEEECCHHHHHHHHHhhhhc-C-ceEEEEEECCC--CCcCCCChHHHHHHHHHHh-hc
Confidence 4 455666655555 389999999999999999998866 6 99999999999 9999999999888888887 88
Q ss_pred CCeEEeEEEeecCCCCCC-------chHHHH
Q 028985 163 PNLEFSGLMTIGMPDYTS-------TPENFR 186 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~~-------~~~~F~ 186 (200)
+++.++|+||||+++|++ |.+.|+
T Consensus 153 ~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~ 183 (360)
T COG0787 153 KNLDLEGIFSHFACADEPEDPYTLKQLERFN 183 (360)
T ss_pred cCCceEEEEcccCCCCCCCChHHHHHHHHHH
Confidence 888899999999998863 667777
No 10
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.97 E-value=3.4e-29 Score=222.20 Aligned_cols=169 Identities=18% Similarity=0.206 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++. +++++||+|+ ||+.++ +.+.++|+++|||++++||+.+|+. ++.+| .++
T Consensus 5 ~Idl~al~~N~~~i~~~~~~---~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~I--lvl 79 (368)
T cd06825 5 EIDLSALEHNVKEIKRLLPS---TCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEI--LIL 79 (368)
T ss_pred EEEHHHHHHHHHHHHHhCCC---CCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCCE--EEE
Confidence 45788999999988888753 4789999999 999776 7788999999999999999999998 55576 445
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~ 164 (200)
|+..++++..+++ ++++++|+|.+++++|++.+ + +++|||+|||| |+|+||.|+++ +++..+. ++++
T Consensus 80 ~~~~~~~~~~~~~----~~l~~~i~~~~~l~~l~~~~----~-~~~vhlkvDtG--m~R~G~~~~~~-~~~~~~~-~~~~ 146 (368)
T cd06825 80 GYTPPVRAKELKK----YSLTQTLISEAYAEELSKYA----V-NIKVHLKVDTG--MHRLGESPEDI-DSILAIY-RLKN 146 (368)
T ss_pred cCCCHHHHHHHHH----cCCEEEECCHHHHHHHHhcC----C-CceEEEEeeCC--CCCCCCCHHHH-HHHHHHH-hCCC
Confidence 7777788888883 79999999999999998865 5 78999999999 99999999654 6667777 8899
Q ss_pred eEEeEEEeecCCCCC----------CchHHHHHHHHHHHhccc
Q 028985 165 LEFSGLMTIGMPDYT----------STPENFRVMDFSFRRAHV 197 (200)
Q Consensus 165 l~~~GlmTh~a~~~~----------~~~~~F~~l~~~~~~~~~ 197 (200)
+++.|+||||+++++ .|.+.|.++.+.++.+++
T Consensus 147 l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g~ 189 (368)
T cd06825 147 LKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGI 189 (368)
T ss_pred CcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998653 145678888887776543
No 11
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.96 E-value=7.5e-29 Score=219.10 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccc
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~ 83 (200)
+..|+++|++|++.+++.++ +++++||+|+ ||+.++ +++. ++++|||++++||+.+|+. ++.+| .+
T Consensus 6 ~~Idl~al~~N~~~i~~~~~----~~~i~aVVKanAYGhG~~~va~~l~--~~~~faVa~l~Ea~~LR~~Gi~~~I--lv 77 (355)
T PRK03646 6 ASLDLQALKQNLSIVREAAP----GARVWSVVKANAYGHGIERIWSALG--ATDGFAVLNLEEAITLRERGWKGPI--LM 77 (355)
T ss_pred EEEEHHHHHHHHHHHHHhCC----CCeEEEEEeeccccCCHHHHHHHHh--cCCEEEEeeHHHHHHHHhcCCCCCE--EE
Confidence 34688888999988887763 4789999998 999887 5453 3999999999999999998 66676 34
Q ss_pred c-CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcC
Q 028985 84 V-GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (200)
Q Consensus 84 i-G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~ 162 (200)
+ |...++++..+++ ++++++|+|.+++++|++.+ .++ +++|||||||| |+|+||.|+++.++++.+. .+
T Consensus 78 l~~~~~~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~--~~~-~~~vhLkvDTG--M~R~G~~~~e~~~~~~~i~-~~ 147 (355)
T PRK03646 78 LEGFFHAQDLELYDQ----HRLTTCVHSNWQLKALQNAR--LKA-PLDIYLKVNSG--MNRLGFQPERVQTVWQQLR-AM 147 (355)
T ss_pred EeCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhc--cCC-CeEEEEEeeCC--CCCCCCCHHHHHHHHHHHH-hC
Confidence 4 5567788888873 89999999999999999876 466 89999999999 9999999999999999997 89
Q ss_pred CCeEEeEEEeecCCCCC-----CchHHHHHHHH
Q 028985 163 PNLEFSGLMTIGMPDYT-----STPENFRVMDF 190 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~-----~~~~~F~~l~~ 190 (200)
++|+++|+||||+++|+ .|.+.|.++.+
T Consensus 148 ~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~~~~ 180 (355)
T PRK03646 148 GNVGEMTLMSHFARADHPDGISEAMARIEQAAE 180 (355)
T ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999875 36677777664
No 12
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.96 E-value=8e-28 Score=213.09 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++. +.++++|+|+ ||+.++ +.+.++|+++|+|++++||..+|+. ++.+| .++
T Consensus 5 ~Idl~al~~N~~~i~~~~~~---~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~i--lvl 79 (365)
T cd06826 5 EISTGAFENNIKLLKKLLGG---NTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKI--LRV 79 (365)
T ss_pred EEEHHHHHHHHHHHHHhCCC---CCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCE--EEE
Confidence 35788888999888887753 5699999998 999876 7788999999999999999999998 65565 344
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC-CCCCCcCCCChhh--HHHHHHHHHhc
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSS--CLGIVEHVRLR 161 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt-G~em~R~G~~~e~--~~~~~~~i~~~ 161 (200)
|...+.+++.+++ +++.++|+|.++++.|++.+.+.|+ +++|||+||| | |+|+||.+++ +.+++..+. +
T Consensus 80 ~~~~~~e~~~~i~----~~i~~~v~s~~~l~~l~~~a~~~~~-~~~v~LkvDt~G--m~R~Gi~~~~~~~~~~~~~~~-~ 151 (365)
T cd06826 80 RTATPSEIEDALA----YNIEELIGSLDQAEQIDSLAKRHGK-TLPVHLALNSGG--MSRNGLELSTAQGKEDAVAIA-T 151 (365)
T ss_pred eCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCCCCCcchhhHHHHHHHHH-H
Confidence 7778888999983 7899999999999999999988897 9999999999 9 9999999843 567777887 8
Q ss_pred CCCeEEeEEEeecCCCCC----CchHHHHHHHHHH
Q 028985 162 CPNLEFSGLMTIGMPDYT----STPENFRVMDFSF 192 (200)
Q Consensus 162 ~~~l~~~GlmTh~a~~~~----~~~~~F~~l~~~~ 192 (200)
+++|++.|+||||+++++ .|...|.++.+..
T Consensus 152 ~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~~ 186 (365)
T cd06826 152 LPNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWL 186 (365)
T ss_pred CCCCcEEEEEEeCCCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999998765 3667888866544
No 13
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.96 E-value=1e-27 Score=212.24 Aligned_cols=173 Identities=17% Similarity=0.284 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++ ++.++++|+|+ ||...+ +.+.++|+++|+|++++||..+|+. ++.++ +++
T Consensus 6 ~Idl~~l~~N~~~i~~~~~---~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~i--lvl 80 (367)
T TIGR00492 6 EIDLAALKHNLSAIRNHIG---PKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAPI--LLL 80 (367)
T ss_pred EEEHHHHHHHHHHHHHhcC---CCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCE--EEE
Confidence 3567788888888877764 35689999998 999776 7788999999999999999999998 44344 677
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~ 164 (200)
|+.++.++..+++ ++++++|+|+++++.|++.+.+.|+ +++|||+|||| |+|.||.++++.++++.+. ++++
T Consensus 81 ~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~l~VdtG--m~R~Gi~~~e~~~~~~~i~-~~~~ 152 (367)
T TIGR00492 81 GGFFAEDLKILAA----WDLTTTVHSVEQLQALEEALLKEPK-RLKVHLKIDTG--MNRLGVKPDEAALFVQKLR-QLKK 152 (367)
T ss_pred eCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHHH-hCCC
Confidence 8888888888883 7889999999999999999988887 99999999999 9999999999999998887 8999
Q ss_pred eE-EeEEEeecCCCCC-------CchHHHHHHHHHHHhcc
Q 028985 165 LE-FSGLMTIGMPDYT-------STPENFRVMDFSFRRAH 196 (200)
Q Consensus 165 l~-~~GlmTh~a~~~~-------~~~~~F~~l~~~~~~~~ 196 (200)
++ +.|+||||+++++ +|.+.|.++.+.++..+
T Consensus 153 l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g 192 (367)
T TIGR00492 153 FLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQN 192 (367)
T ss_pred CCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Confidence 99 9999999998653 14466777777666544
No 14
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.96 E-value=1.2e-27 Score=230.74 Aligned_cols=175 Identities=12% Similarity=0.172 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcc
Q 028985 7 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIK 80 (200)
Q Consensus 7 ~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~ 80 (200)
.+.+..|+++|++|++.+++.++. .++++||||+ ||+.++ +.+.++|+++|||++++||+.+|+. ++.+|
T Consensus 459 ~~~~~Idl~al~~N~~~i~~~~~~---~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~Ea~~lr~~g~~~~I- 534 (822)
T PRK11930 459 ETVLEINLNAIVHNLNYYRSKLKP---ETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADEGVSLRKAGITLPI- 534 (822)
T ss_pred hHHhhhhHHHHHHHHHHHHhhCCC---CCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE-
Confidence 356778999999999999988753 5799999997 999776 7788999999999999999999998 65576
Q ss_pred ccccCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcC-CCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 81 WHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 81 ~~~iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g-~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
.++|+. +.++..+++ ++++++|+|.++++++++.+.+.| + +++|||+|||| |+|+||.|+++.++++.+.
T Consensus 535 -lvl~~~-~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~~~~~~~-~~~v~l~vDtG--m~R~G~~~~~~~~~~~~i~ 605 (822)
T PRK11930 535 -MVMNPE-PTSFDTIID----YKLEPEIYSFRLLDAFIKAAQKKGIT-GYPIHIKIDTG--MHRLGFEPEDIPELARRLK 605 (822)
T ss_pred -EEEeCC-HHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHHH
Confidence 455775 677888883 899999999999999999998777 7 89999999999 9999999999999999997
Q ss_pred hcCCCeEEeEEEeecCCCCC--------CchHHHHHHHHHHHhc
Q 028985 160 LRCPNLEFSGLMTIGMPDYT--------STPENFRVMDFSFRRA 195 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~~~~--------~~~~~F~~l~~~~~~~ 195 (200)
+++++++.|+||||+++++ .|.+.|.++.+.++.+
T Consensus 606 -~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~ 648 (822)
T PRK11930 606 -KQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEA 648 (822)
T ss_pred -hCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999998654 2557888888776654
No 15
>PRK00053 alr alanine racemase; Reviewed
Probab=99.95 E-value=7.5e-27 Score=206.47 Aligned_cols=171 Identities=19% Similarity=0.361 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++ +++++++|+|+ ||...+ +.+.++|++.|+|++++||..+++. ++.+| .++
T Consensus 7 ~Idl~~l~~N~~~i~~~~~---~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~~i--l~l 81 (363)
T PRK00053 7 EIDLDALRHNLRQIRKHAP---PKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPI--LIL 81 (363)
T ss_pred EEeHHHHHHHHHHHHHhCC---CCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCE--EEE
Confidence 4577788888888777764 35799999997 999887 6677899999999999999999998 55566 445
Q ss_pred CC-CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCC
Q 028985 85 GH-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 163 (200)
Q Consensus 85 G~-~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~ 163 (200)
|+ ....+++.+++ ++++++|+|+++++.|++. +.++ +++|||+|||| |+|.||.++++.++++.+. +++
T Consensus 82 ~~~~~~~e~~~~~~----~~i~~~v~s~~~l~~l~~~--~~~~-~~~V~l~vdtG--~~R~Gi~~~e~~~~~~~i~-~~~ 151 (363)
T PRK00053 82 GGFFPAEDLPLIIA----YNLTTAVHSLEQLEALEKA--ELGK-PLKVHLKIDTG--MHRLGVRPEEAEAALERLL-ACP 151 (363)
T ss_pred eCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh--ccCC-CeEEEEEecCC--CCcCCCCHHHHHHHHHHHH-hCC
Confidence 54 46678888883 7889999999999999996 5676 89999999999 9999999999999999998 999
Q ss_pred CeEEeEEEeecCCCCC-------CchHHHHHHHHHHHhcc
Q 028985 164 NLEFSGLMTIGMPDYT-------STPENFRVMDFSFRRAH 196 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~-------~~~~~F~~l~~~~~~~~ 196 (200)
++++.|||||++++++ +|.+.|.++.+.++..+
T Consensus 152 ~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g 191 (363)
T PRK00053 152 NVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKG 191 (363)
T ss_pred CCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999998653 25567877777665443
No 16
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.95 E-value=3.9e-26 Score=201.77 Aligned_cols=173 Identities=20% Similarity=0.275 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGH 86 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~ 86 (200)
.|+++|++|++.+++.++. ++++++|+|+ ||...+ +.+.++|++.|+|++++||..+++.... ..|+++|+
T Consensus 6 Id~~~i~~N~~~l~~~~~~---~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~-~~i~~~~~ 81 (367)
T cd00430 6 IDLDALRHNLRVIRRLLGP---GTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGIT-APILVLGG 81 (367)
T ss_pred EEHHHHHHHHHHHHHhCCC---CCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCC-CCEEEEeC
Confidence 4677788888877777642 6899999998 999776 7788999999999999999999998333 23477788
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.+.++++.+++ +++++++||+++++.|++.+.+.++ +++|+|+|||| |+|.||.++++.++++.+. ++++++
T Consensus 82 ~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~v~l~vdtG--~~R~G~~~~e~~~~~~~i~-~~~~l~ 153 (367)
T cd00430 82 TPPEEAEEAIE----YDLTPTVSSLEQAEALSAAAARLGK-TLKVHLKIDTG--MGRLGFRPEEAEELLEALK-ALPGLE 153 (367)
T ss_pred CCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEcCC--CCCCCCCHHHHHHHHHHHH-hCCCce
Confidence 88999999983 5889999999999999999988887 99999999999 9999999999999999998 899999
Q ss_pred EeEEEeecCCCCC-------CchHHHHHHHHHHHhcc
Q 028985 167 FSGLMTIGMPDYT-------STPENFRVMDFSFRRAH 196 (200)
Q Consensus 167 ~~GlmTh~a~~~~-------~~~~~F~~l~~~~~~~~ 196 (200)
+.|||||+++.++ .|.+.|.++.+.+++.+
T Consensus 154 ~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g 190 (367)
T cd00430 154 LEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAG 190 (367)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998543 25577888877776544
No 17
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.95 E-value=2.2e-26 Score=203.34 Aligned_cols=163 Identities=17% Similarity=0.262 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++ ++++++|+|+ ||...+ +.+.+ +++|+|++++||..+|+. ++.+| .++
T Consensus 5 ~Idl~~l~~N~~~l~~~~~----~~~l~~vvKanaYGhG~~~ia~~l~~--~~~f~Vas~~Ea~~lr~~G~~~~i--lvl 76 (354)
T cd06827 5 TIDLAALRHNLRLVRELAP----NSKILAVVKANAYGHGLVRVAKALAD--ADGFAVACIEEALALREAGITKPI--LLL 76 (354)
T ss_pred EEEHHHHHHHHHHHHhhCC----CCeEEEEEeeccccCCHHHHHHHHHc--CCEEEEccHHHHHHHHhCCCCCCE--EEE
Confidence 3578888888888887764 3789999998 999887 55555 899999999999999998 55566 334
Q ss_pred -CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCC
Q 028985 85 -GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 163 (200)
Q Consensus 85 -G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~ 163 (200)
|+..+++++.+++ ++++++|+|.++++.+++.+ .++ +++|||+|||| |+|.||.++++.++++.+. +++
T Consensus 77 ~~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~~--~~~-~~~v~l~vDtG--m~R~Gi~~~e~~~~~~~i~-~~~ 146 (354)
T cd06827 77 EGFFSADELPLAAE----YNLWTVVHSEEQLEWLEQAA--LSK-PLNVWLKLDSG--MHRLGFSPEEYAAAYQRLK-ASP 146 (354)
T ss_pred ECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhc--CCC-CeEEEEEeeCC--cCCCCCCHHHHHHHHHHHH-hCC
Confidence 5667788888773 78999999999999999887 466 89999999999 9999999999999999987 899
Q ss_pred CeEEeEEEeecCCCCCC-------chHHHHHHHHH
Q 028985 164 NLEFSGLMTIGMPDYTS-------TPENFRVMDFS 191 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~~-------~~~~F~~l~~~ 191 (200)
++++.|+||||+++++. |.+.|.++.+.
T Consensus 147 ~l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~ 181 (354)
T cd06827 147 NVASIVLMTHFACADEPDSPGTAKQLAIFEQATAG 181 (354)
T ss_pred CceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhc
Confidence 99999999999987642 55667776654
No 18
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.94 E-value=8.9e-26 Score=201.65 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcC--CeeeeccHHHHHHHhcC-CCCCccccccC-
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH--RSFGENYVQEIVDKAPQ-LPEDIKWHFVG- 85 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~--~~fgva~v~Ea~~lr~~-~~~~i~~~~iG- 85 (200)
..|++++++|++.+++.++. .+++++||+|+||+.++ +.++++|+ ++|+|++++||+.+|+. +..+|.-.++|
T Consensus 10 ~Idl~al~~Ni~~m~~~~~~--~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~dilla~ 87 (389)
T cd06817 10 VIDRAKFKRNCERMLQRAKA--LGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDDILYGL 87 (389)
T ss_pred EEEHHHHHHHHHHHHHHHHH--cCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhccccccccEEEEC
Confidence 35677777777777776643 36899999999999887 77889999 99999999999999998 44344223456
Q ss_pred CCChHHHHhHhccCCCcc-EEEeeCcHHHHHHHHHH-HHhcCCCCeeEEEEEeCCCCCCcCCCCh--hhHHHHHHHHHhc
Q 028985 86 HLQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKA-VSNLGRKPLKVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLR 161 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~sv~s~~~a~~l~~~-a~~~g~~~~~v~lkvdtG~em~R~G~~~--e~~~~~~~~i~~~ 161 (200)
++.+.+++.+++..+.++ +..+|||.++++.|++. +...|+ +++|||+|||| |+|+||.+ +++.++++.+. +
T Consensus 88 ~~~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~-~~~V~lkvDtG--m~R~Gv~~~~~~~~~l~~~i~-~ 163 (389)
T cd06817 88 PVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGK-KWSVFIKVDCG--THRAGVPPESEDAKELIQKLE-K 163 (389)
T ss_pred CCCHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCC-ceEEEEEEcCC--CCcCCCCCChHHHHHHHHHHH-h
Confidence 567788888873100113 99999999999999998 877887 99999999999 99999986 35888999997 8
Q ss_pred -CCCeEEeEEEeecCCCC
Q 028985 162 -CPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 162 -~~~l~~~GlmTh~a~~~ 178 (200)
+++|++.|+|||++++.
T Consensus 164 ~~~~L~l~Gi~tH~g~~~ 181 (389)
T cd06817 164 ASEAVELFGFYSHAGHSY 181 (389)
T ss_pred hCCCcEEEEEEEeCCccc
Confidence 99999999999999854
No 19
>PRK13340 alanine racemase; Reviewed
Probab=99.94 E-value=3.3e-25 Score=198.92 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccc
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~ 83 (200)
+..|+++|++|++.+++.++. ..++++|+|+ ||+.++ +.+.++|+++|+|++++||..+|+. ++.++ .+
T Consensus 43 l~Idl~ai~~N~~~i~~~~~~---~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~i--lv 117 (406)
T PRK13340 43 LEISPGAFRHNIKTLRSLLAN---KSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQL--LR 117 (406)
T ss_pred EEEcHHHHHHHHHHHHHhCCC---CCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCE--EE
Confidence 457888999999988887753 3689999998 888776 7788999999999999999999998 55554 23
Q ss_pred cCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC-CCCCCcCCCChhhHHHH--HHHHHh
Q 028985 84 VGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSSCLGI--VEHVRL 160 (200)
Q Consensus 84 iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt-G~em~R~G~~~e~~~~~--~~~i~~ 160 (200)
++.....+++.+++ ++++.+|+|.++++.|++.+.+.++ +++|||+||| | |+|+||.+++...+ +..+.
T Consensus 118 l~~~~~~el~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~LkVDt~G--m~R~G~~~~e~~~~~~~~~l~- 189 (406)
T PRK13340 118 VRSASPAEIEQALR----YDLEELIGDDEQAKLLAAIAKKNGK-PIDIHLALNSGG--MSRNGLDMSTARGKWEALRIA- 189 (406)
T ss_pred ECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCcCCChhhhhHHHHHHHHH-
Confidence 35557788888883 6889999999999999999988887 9999999999 8 99999998655333 33676
Q ss_pred cCCCeEEeEEEeecCCCCC----CchHHHHHHHHHH
Q 028985 161 RCPNLEFSGLMTIGMPDYT----STPENFRVMDFSF 192 (200)
Q Consensus 161 ~~~~l~~~GlmTh~a~~~~----~~~~~F~~l~~~~ 192 (200)
+++++++.|+||||+++++ .|...|.++...+
T Consensus 190 ~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~l 225 (406)
T PRK13340 190 TLPSLGIVGIMTHFPNEDEDEVRWKLAQFKEQTAWL 225 (406)
T ss_pred hCCCccEEEEEEECCCCCcHHHHHHHHHHHHHHHHH
Confidence 8899999999999998764 2556777666544
No 20
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.94 E-value=1.5e-25 Score=197.09 Aligned_cols=158 Identities=22% Similarity=0.343 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCCC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHLQ 88 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~~ 88 (200)
.|++++++|++.+++.++. .++++++|+|+||..++ +.+.++|+++|+|++++||..+++. ++. .+.|+++|+.+
T Consensus 8 id~~~l~~Ni~~~~~~~~~--~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~i~i~~~~~~~~~ 85 (353)
T cd06820 8 IDLDRLERNIARMQAYADA--HGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLSDIFIAYPIVGRQK 85 (353)
T ss_pred EeHHHHHHHHHHHHHHHHH--cCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCCeEEEECCcCCHHH
Confidence 4667777777777776643 46899999999999776 7788999999999999999999987 432 25666677766
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCCCeEE
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~~l~~ 167 (200)
.+++..++ +..+++.++||++.++.|++.++..|+ +++|+|+||+| |+|.|+.+ +++.++++.+. ++|+|++
T Consensus 86 ~~~l~~l~---~~~~~~~~vds~~~l~~L~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~l 158 (353)
T cd06820 86 LERLRALA---ERVTLSVGVDSAEVARGLAEVAEGAGR-PLEVLVEVDSG--MNRCGVQTPEDAVALARAIA-SAPGLRF 158 (353)
T ss_pred HHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEECCC--CCcCCCCChHHHHHHHHHHH-hCCCcEE
Confidence 67777777 357899999999999999999999997 99999999999 99999998 89999999998 8999999
Q ss_pred eEEEeecCCCC
Q 028985 168 SGLMTIGMPDY 178 (200)
Q Consensus 168 ~GlmTh~a~~~ 178 (200)
.|+|||+++..
T Consensus 159 ~Gi~~h~g~~~ 169 (353)
T cd06820 159 RGIFTYPGHSY 169 (353)
T ss_pred EEEEecCCccC
Confidence 99999999865
No 21
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.93 E-value=7e-25 Score=192.32 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCC-hHHHHh
Q 028985 17 VLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQ-SNKAKT 94 (200)
Q Consensus 17 i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~-~~~~~~ 94 (200)
|++|++.+++.+.. .++++++|+|+||..++ +.+.++|+++|+|++++||..+++....+| ++.++++ +++++.
T Consensus 2 l~~Ni~~~~~~~~~--~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~~~I--li~~~~~~~~~~~~ 77 (345)
T cd07376 2 LEANISRMAARARA--SGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVKDI--LMAYPLVGPAAIAR 77 (345)
T ss_pred hHHHHHHHHHHHHH--cCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCCCeE--EEECCcCCHHHHHH
Confidence 44555555554421 46899999999999776 778899999999999999999999833566 4456776 666666
Q ss_pred HhccCC-CccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHH--HHHhcCCCeEEeEEE
Q 028985 95 LLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE--HVRLRCPNLEFSGLM 171 (200)
Q Consensus 95 ~~~~~~-~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~--~i~~~~~~l~~~Glm 171 (200)
+.+... ..++..+|||.++++.|++.+.+.|+ +++|||+|||| |+|+||.+++...+.. .+. ++++|++.|+|
T Consensus 78 ~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~ID~G--~~R~Gv~~~~~~~l~~~~~i~-~~~~l~l~Gl~ 153 (345)
T cd07376 78 LAGLLRQEAEFHVLVDSPEALAALAAFAAAHGV-RLRVMLEVDVG--GHRSGVRPEEAAALALADAVQ-ASPGLRLAGVM 153 (345)
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEeCCC--CCcCCCCCcHHHHHHHHHHhc-cCCCeEEeEEE
Confidence 641101 25688999999999999999988897 99999999999 9999999855444333 334 67999999999
Q ss_pred eecCCC
Q 028985 172 TIGMPD 177 (200)
Q Consensus 172 Th~a~~ 177 (200)
||+++.
T Consensus 154 ~h~g~~ 159 (345)
T cd07376 154 AYEGHI 159 (345)
T ss_pred eecchh
Confidence 999975
No 22
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.93 E-value=9.6e-25 Score=192.54 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCCC
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGHL 87 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~~ 87 (200)
..|+++|++|++.+++.++. +.++++|+|+||...+ +.+.++|+++|+|++++||..+++. +++. +.|++.|+.
T Consensus 13 ~id~~~l~~Ni~~~~~~~~~---~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ill~~~~~~~~ 89 (361)
T cd06821 13 AVYPDRIEENIRRMIRMAGD---PQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAPDVLLAYPLVGPN 89 (361)
T ss_pred EEeHHHHHHHHHHHHHHHhc---CCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCCeEEEeCCCCHHH
Confidence 35777888888888877753 3589999999999876 7788999999999999999999998 4432 456665654
Q ss_pred ChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChh-hHHHHHHHHHhcCCCeE
Q 028985 88 QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e-~~~~~~~~i~~~~~~l~ 166 (200)
+.+.++.+.. ....+++.+|||.++++.|++.+.+.|+ +++|+|+|||| |+|.||.++ ++.++++.+. ++|+|+
T Consensus 90 ~~~~~~l~~~-~~~~~~~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~Vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~ 164 (361)
T cd06821 90 IERFLELAKK-YPGTRFSALVDDLEAAEALSAAAGSAGL-TLSVLLDVNTG--MNRTGIAPGEDAEELYRAIA-TLPGLV 164 (361)
T ss_pred HHHHHHHHhh-CCCCeEEEEECCHHHHHHHHHHHHHcCC-eEEEEEEeCCC--CCcCCCCChHHHHHHHHHHh-hCCCce
Confidence 4444444431 1124688999999999999999998897 99999999999 999999986 7999999998 899999
Q ss_pred EeEEEeecCC
Q 028985 167 FSGLMTIGMP 176 (200)
Q Consensus 167 ~~GlmTh~a~ 176 (200)
+.|+|+|.++
T Consensus 165 l~Gl~~~~gh 174 (361)
T cd06821 165 LAGLHAYDGH 174 (361)
T ss_pred EeeEEeecCc
Confidence 9999987765
No 23
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.92 E-value=1.2e-23 Score=187.45 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHH-HhcCCeeeeccHHHHHHHhcCC-CCCccccccC-C
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVY-DAGHRSFGENYVQEIVDKAPQL-PEDIKWHFVG-H 86 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~-~~G~~~fgva~v~Ea~~lr~~~-~~~i~~~~iG-~ 86 (200)
..+++++++|++.+++.++ .+++++||+|+|+..++ +.++ ++|+++|+|++++||+.+|+.. ..+| + +| +
T Consensus 13 ~IDl~al~~Ni~~m~~~~~---~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~~dI--L-l~~p 86 (379)
T cd06814 13 LLDKDRLDHNIDLLREHLA---GSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADI--L-LGKP 86 (379)
T ss_pred EEEHHHHHHHHHHHHHhhC---CCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCCcCe--E-EeCC
Confidence 3577888888888888775 36899999999999654 5555 7899999999999999999873 3366 3 45 4
Q ss_pred CChHHHHhHhc-----c-CCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChh-hHHHHHHHHH
Q 028985 87 LQSNKAKTLLG-----G-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVR 159 (200)
Q Consensus 87 ~~~~~~~~~~~-----~-~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e-~~~~~~~~i~ 159 (200)
+...++..+++ . ...+++..+|||.++++.|++.+.+.|+ +++|||+|||| |+|+||.++ ++.++++.+.
T Consensus 87 ~~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~-~l~V~lkVDtG--m~R~Gv~~~~~~~~l~~~i~ 163 (379)
T cd06814 87 MPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGL-TLRINLELDVG--LHRGGFADPQTLPKALTAID 163 (379)
T ss_pred CCcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCCCCCCCHHHHHHHHHHHH
Confidence 44555544321 0 0126799999999999999999988887 99999999999 999999875 6999999998
Q ss_pred hcCCCeEEeEEEeecCC
Q 028985 160 LRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~ 176 (200)
+++++++.|||||.++
T Consensus 164 -~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 164 -APPRLRFSGLMGYEPH 179 (379)
T ss_pred -hCCCceEEEEEEEccc
Confidence 8999999999999987
No 24
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.90 E-value=8.9e-23 Score=179.70 Aligned_cols=156 Identities=20% Similarity=0.252 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCc--cccccCCCC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDI--KWHFVGHLQ 88 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i--~~~~iG~~~ 88 (200)
.|+++|++|++.+++.++. .++++.+++|+|+...+ +.+.++|+++|+|++++|+..+++..-.+| .+.+.|+..
T Consensus 12 id~~~l~~N~~~l~~~~~~--~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ili~~~~~~~~~ 89 (358)
T cd06819 12 LDLDALERNIKRMAAFAKA--HGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIRDILITNEVVGPAK 89 (358)
T ss_pred EEHHHHHHHHHHHHHHHHH--cCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCCeEEEECCcCCHHH
Confidence 4667777777777766643 36789999999999776 778899999999999999999998732343 333435443
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCC-hhhHHHHHHHHHhcCCCeEE
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~-~e~~~~~~~~i~~~~~~l~~ 167 (200)
.+++..++ ..+++..++||++.++.|++.+.+.|+ +++|+|+||+| |+|.|+. ++++.++++.+. ++++|++
T Consensus 90 ~~~~~~~~---~~~~i~~~vDs~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~l 162 (358)
T cd06819 90 IARLAALA---RRAPLIVCVDHPDNVRALAAAAVEAGV-RLDVLVEIDVG--QGRCGVPPGEAALALARTIA-ALPGLRF 162 (358)
T ss_pred HHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCcCCCCChHHHHHHHHHHH-hCCCceE
Confidence 34444444 247799999999999999999998897 99999999999 9999998 578999999998 8999999
Q ss_pred eEEEeecCC
Q 028985 168 SGLMTIGMP 176 (200)
Q Consensus 168 ~GlmTh~a~ 176 (200)
.|+|+|.++
T Consensus 163 ~Gi~~y~G~ 171 (358)
T cd06819 163 AGLQAYHGH 171 (358)
T ss_pred eEEEeeCch
Confidence 999886654
No 25
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.89 E-value=1.3e-21 Score=159.30 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCC-hHHHHh
Q 028985 17 VLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQ-SNKAKT 94 (200)
Q Consensus 17 i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~-~~~~~~ 94 (200)
|++|++.+++..+ +++++++|+|+.+...+ +.+.++ ...|+|++++|+..+++....+..+++.|+.. +++++.
T Consensus 1 l~~N~~~i~~~~~---~~~~i~~~vKan~~~~i~~~~~~~-~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~ 76 (211)
T cd06808 1 IRHNYRRLREAAP---AGITLFAVVKANANPEVARTLAAL-GTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELED 76 (211)
T ss_pred ChHHHHHHHHhCC---CCCEEEEEEecCCCHHHHHHHHHc-CCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHH
Confidence 3566666666653 26899999999997665 777777 78999999999999998733233347788887 788998
Q ss_pred HhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeec
Q 028985 95 LLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174 (200)
Q Consensus 95 ~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~ 174 (200)
+++ ...++.++||.+.++.|++.+++.|+ +++|+|+||+|..|+|.|+.++++.++++.+. +++++++.|+|||+
T Consensus 77 ~~~---~~~~~~~ids~~~l~~l~~~~~~~~~-~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~-~~~~l~l~Gl~~H~ 151 (211)
T cd06808 77 AAE---QGVIVVTVDSLEELEKLEEAALKAGP-PARVLLRIDTGDENGKFGVRPEELKALLERAK-ELPHLRLVGLHTHF 151 (211)
T ss_pred HHH---cCCCEEEeCCHHHHHHHHHHHHHhCC-CceEEEEEcCCCCCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEEec
Confidence 883 22678899999999999999988887 99999999998889999999999999999998 89999999999999
Q ss_pred CCCCC------CchHHHHHHHHHHHhcc
Q 028985 175 MPDYT------STPENFRVMDFSFRRAH 196 (200)
Q Consensus 175 a~~~~------~~~~~F~~l~~~~~~~~ 196 (200)
++.+. .+...|..+.+.+++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (211)
T cd06808 152 GSADEDYSPFVEALSRFVAALDQLGELG 179 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 88654 13355666666555443
No 26
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.89 E-value=1.6e-21 Score=173.97 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccC--CHHHHHHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCC
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTK--PVSLIRQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGH 86 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKah--g~~~i~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~ 86 (200)
..|+++|++|++.+++.++. .++++++|+|++ +...++.+.++|+++|+|++++||..+|+. ++. .| ..++.
T Consensus 32 vIDl~~I~~N~~~l~~~~~~--~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~lr~aGi~~~~I--~~l~~ 107 (382)
T cd06811 32 VIDLDQIEENARLLAETAEK--YGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHV--GHLVQ 107 (382)
T ss_pred EecHHHHHHHHHHHHHHHhh--CCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHHHHHcCCCHHhE--EEccC
Confidence 34788888888888877743 368999999996 434457788999999999999999999997 332 23 22334
Q ss_pred CChHHHHhHhccCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcC------CCChhhHHHHHHHHH
Q 028985 87 LQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKS------GIDPSSCLGIVEHVR 159 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~------G~~~e~~~~~~~~i~ 159 (200)
..+++++.+++ .+ .+.+|+|++++++|++.|++.|+ +++|||+|||| |+|+ ||.++++.++++.+.
T Consensus 108 ~~~~el~~~v~----~~~~~i~V~s~~~l~~L~~~A~~~g~-~~~V~LrVdtg--~~ri~~g~~~G~~~~e~~~~~~~i~ 180 (382)
T cd06811 108 IPRHQVPAVLA----MRPEVITVYSLEKAREISDAAVELGR-VQDVLLRVYGD--EDTLYPGQEGGFPLEELPAVLAAIK 180 (382)
T ss_pred CCHHHHHHHHH----cCCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEECC--CCccccCccceecHHHHHHHHHHHH
Confidence 56789999983 45 47999999999999999998897 99999999999 9987 999999999999998
Q ss_pred hcCCCeEEeEEEeecCCC--CC-C-------chHHHHHHHHHHHhcc
Q 028985 160 LRCPNLEFSGLMTIGMPD--YT-S-------TPENFRVMDFSFRRAH 196 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~~--~~-~-------~~~~F~~l~~~~~~~~ 196 (200)
++++|++.|+ |||++. ++ . +...|.++.+.++..+
T Consensus 181 -~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g 225 (382)
T cd06811 181 -ALPGIRIAGL-TSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRG 225 (382)
T ss_pred -cCCCcEEEeE-cccchhhcccCcccccHHHHHHHHHHHHHHHHHCC
Confidence 9999999999 777762 22 1 2345666666665544
No 27
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.88 E-value=2.5e-21 Score=172.49 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCcccc--ccCCCC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWH--FVGHLQ 88 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~--~iG~~~ 88 (200)
.|+++|++|++.+++.++. .++++++++|+|....+ +.+.++|+++|+|+++.||..+++....++.+. .+|+..
T Consensus 8 idl~~l~~N~~~m~~~~~~--~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~~il~~~~~~~~~~ 85 (382)
T cd06818 8 LDASALAHNLAWMQAFAAA--HGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVRRVLLANQLVGKAN 85 (382)
T ss_pred EEHHHHHHHHHHHHHHHhh--cCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCCeEEEecCcCChHH
Confidence 4666777777777766643 46899999999998776 778899999999999999999998732334222 346555
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCCCeEE
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~~l~~ 167 (200)
.+++..+++.+...++...|||+++++.|++.+.+.|+ +++|+|+||+| |+|+|+.+ +++.++++.+. ++|+|++
T Consensus 86 ~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~-~~~v~i~vn~g--~~R~G~~~~~~~~~l~~~i~-~~~~l~l 161 (382)
T cd06818 86 LRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALER-PLNVLIELGVP--GGRTGVRTEAEALALADAIA-ASPALRL 161 (382)
T ss_pred HHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCHHHHHHHHHHHH-cCCCceE
Confidence 56677777311145688999999999999999988897 99999999999 99999974 77899999998 9999999
Q ss_pred eEEEeecCCC---C---C--CchHHHHHHHHHHH
Q 028985 168 SGLMTIGMPD---Y---T--STPENFRVMDFSFR 193 (200)
Q Consensus 168 ~GlmTh~a~~---~---~--~~~~~F~~l~~~~~ 193 (200)
.|||+|.++. + + ...+.|+.+.++.+
T Consensus 162 ~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (382)
T cd06818 162 AGVEGYEGVAAHDDSEETLAAVRAFLARAVDLAR 195 (382)
T ss_pred eEEEeeccccccCCChhHHHHHHHHHHHHHHHHH
Confidence 9999998654 1 1 13355666666554
No 28
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.87 E-value=8.6e-21 Score=169.47 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHH-hcCCeeeeccHHHHHHHhcCCCCCccccccCC-CC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYD-AGHRSFGENYVQEIVDKAPQLPEDIKWHFVGH-LQ 88 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~-~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~-~~ 88 (200)
.++++|++|++.+++.+ ++.++++|+|+|....+ +.+.+ .|+++|+|+++.||..+++....+| ++.++ ..
T Consensus 16 iDldal~~N~~~l~~~~----~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~~~I--Ll~~p~~~ 89 (388)
T cd06813 16 VDLDALDANAADLVRRA----GGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFDDI--LVAYPSVD 89 (388)
T ss_pred EEHHHHHHHHHHHHHHc----CCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCCCeE--EEeCCCCC
Confidence 46778888888887776 24689999999999765 55665 6999999999999999999833566 33334 35
Q ss_pred hHHHHhHhccC-CCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCC----------hhhHHHHHHH
Q 028985 89 SNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID----------PSSCLGIVEH 157 (200)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~----------~e~~~~~~~~ 157 (200)
..++..+++.. ...+++.+|||.++++.|++.+.+.++ +++|||+|||| |+|.||. ++++.++++.
T Consensus 90 ~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~IDtG--m~R~G~~~G~~Rs~~~~~~~~~~l~~~ 166 (388)
T cd06813 90 RAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRV-EVRVCIDIDAS--LRFGGLHFGVRRSPLHTPAQALALAKA 166 (388)
T ss_pred HHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCC-ceEEEEEECCC--ccccccccCcCCCCCCCHHHHHHHHHH
Confidence 67788877300 013789999999999999999988887 99999999999 9998873 6889999999
Q ss_pred HHhcCCCeEEeEEEeecCC
Q 028985 158 VRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 158 i~~~~~~l~~~GlmTh~a~ 176 (200)
+. +++++++.|||||+++
T Consensus 167 i~-~~~~l~l~Gi~th~g~ 184 (388)
T cd06813 167 IA-ARPGLRLVGLMGYEAQ 184 (388)
T ss_pred Hh-cCCCcEEEEEEEEchh
Confidence 98 8999999999999665
No 29
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.86 E-value=1.3e-20 Score=167.05 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCChH
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSN 90 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~~~ 90 (200)
.+++.|++|++.+++.++. .++++++++|+|+...+ +.+.++|+..|+|++++||..++++...++. +..+ ..+.
T Consensus 11 id~~~l~~Ni~~~~~~~~~--~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~~il-~~~~-~~~~ 86 (374)
T cd06812 11 LDEARMDRNIARLRQRLSR--LGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYRDIL-YAVG-IAPA 86 (374)
T ss_pred EeHHHHHHHHHHHHHHHHH--cCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCeeE-EeCC-CCHH
Confidence 3455666666666655532 36899999999999776 7788999999999999999999998323331 2223 3455
Q ss_pred HHHhHhccCC-CccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChh-h-HHHHHHHHHhcCCCeEE
Q 028985 91 KAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-S-CLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 91 ~~~~~~~~~~-~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e-~-~~~~~~~i~~~~~~l~~ 167 (200)
++..+++-.+ ..++..+|||.+.++.|++.+.+.|+ +++|+|+|||| |+|.|+.++ + +.++++.+. . +++++
T Consensus 87 ~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~~l~~~i~-~-~~l~l 161 (374)
T cd06812 87 KLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGV-RFPVLIEIDCD--GHRGGIAPDSDALLEIARILH-D-GGAEL 161 (374)
T ss_pred HHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCcCCCCCCcHHHHHHHHHHh-c-CCceE
Confidence 5555441001 24678999999999999999998897 99999999999 999999885 3 567777764 4 89999
Q ss_pred eEEEeecCC
Q 028985 168 SGLMTIGMP 176 (200)
Q Consensus 168 ~GlmTh~a~ 176 (200)
.|+|||+++
T Consensus 162 ~Gi~~H~G~ 170 (374)
T cd06812 162 RGVLTHAGE 170 (374)
T ss_pred EEEEccCCc
Confidence 999999965
No 30
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.80 E-value=2.6e-18 Score=147.11 Aligned_cols=170 Identities=17% Similarity=0.186 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccC-CHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTK-PVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKah-g~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
|..||++|.+|.+.+.+.+.+ .++++.+|+|.. |...+ +++...|+..+++++++|++.+|++ ++.+. |++-.
T Consensus 6 l~Idl~~ieeNak~~~~~a~~--~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~--~Llr~ 81 (353)
T COG3457 6 LIIDLDKIEENAKVLQETAAR--YGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPG--HLLRS 81 (353)
T ss_pred EEEeHHHHHHhHHHHHHHHHH--cCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCc--eEeec
Confidence 447999999999999888877 689999999984 45666 6788999999999999999999998 66664 55433
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh---hhHHHHHHHHHhcCC
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP---SSCLGIVEHVRLRCP 163 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~---e~~~~~~~~i~~~~~ 163 (200)
....++..++ +.+|+ .++++++.+.+++++|.+.|+ ..+|+++||.| ..|.|+++ +++.+.+++|. ++|
T Consensus 82 P~~sei~~vv---~~~Dv-s~~sel~~arqlse~A~~~Gk-~h~VlLmVd~~--DlreG~~~~~~~~l~~~V~eI~-~lk 153 (353)
T COG3457 82 PCMSEIEDVV---RKVDV-STVSELDTARQLSEAAVRMGK-VHDVLLMVDYG--DLREGQWGFLIEDLEETVEEIQ-QLK 153 (353)
T ss_pred ccHHHHHHHH---HhcCe-EEEecHHHHHHHHHHHHHhCc-ceeEEEEEEcc--cccCcchhhHHHHHHHHHHHHh-cCC
Confidence 3456788888 45784 779999999999999999998 99999999999 89999988 89999999998 999
Q ss_pred CeEEeEEEeecCCCCC--CchHHHHHHHHH
Q 028985 164 NLEFSGLMTIGMPDYT--STPENFRVMDFS 191 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~--~~~~~F~~l~~~ 191 (200)
++++.||-|+|+|--+ +..++|..+.+.
T Consensus 154 Gi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~ 183 (353)
T COG3457 154 GIHLVGLGTNFPCFGDVLPTPENLESLLQG 183 (353)
T ss_pred CceEEeeecccccccCcCCCcccHHHHHHH
Confidence 9999999999998432 444455544443
No 31
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.79 E-value=6.2e-18 Score=149.15 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCCC-
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGHL- 87 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~~- 87 (200)
.+++.|++|++.+++..+ .++++++++|+++...+ +.+.+.|+ .|.|+++.|+...++. ++.+ | .+-|+.
T Consensus 6 id~~~l~~n~~~l~~~~~---~~~~i~~avKan~~~~i~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~i--v~~gp~~ 79 (368)
T cd06810 6 YDLDIIRAHYAALKEALP---SGVKLFYAVKANPNPHVLRTLAEAGT-GFDVASKGELALALAAGVPPERI--IFTGPAK 79 (368)
T ss_pred eeHHHHHHHHHHHHHhCC---CCCeEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCHHHE--EEcCCCC
Confidence 356777888887777764 36899999999988666 77888998 9999999999999987 4323 4 445775
Q ss_pred ChHHHHhHhccCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC-------------CcCCCChhhHHH
Q 028985 88 QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE-------------SKSGIDPSSCLG 153 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em-------------~R~G~~~e~~~~ 153 (200)
..++++.+++ .+ .+.++||.+.++.|++.+++.++ +.+|+|+||+| | +|.|+.++++.+
T Consensus 80 ~~~~l~~~~~----~~~~~~~vds~~el~~l~~~~~~~~~-~~~v~lrin~g--~~~~~~~~~~~~~~srfGi~~~e~~~ 152 (368)
T cd06810 80 SVSEIEAALA----SGVDHIVVDSLDELERLNELAKKLGP-KARILLRVNPD--VSAGTHKISTGGLKSKFGLSLSEARA 152 (368)
T ss_pred CHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHHhCC-CCeEEEEECCC--CCCCcccCccCCCCCCcCCCHHHHHH
Confidence 4578888883 56 68999999999999999988887 99999999999 5 899999999999
Q ss_pred HHHHHHhcCCCeEEeEEEeecCCCCC---CchHHHHHHHHHHHh
Q 028985 154 IVEHVRLRCPNLEFSGLMTIGMPDYT---STPENFRVMDFSFRR 194 (200)
Q Consensus 154 ~~~~i~~~~~~l~~~GlmTh~a~~~~---~~~~~F~~l~~~~~~ 194 (200)
+++.+. +++ +++.|+|+|+++... ...+.|+.+.+++++
T Consensus 153 ~~~~~~-~~~-l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~ 194 (368)
T cd06810 153 ALERAK-ELD-LRLVGLHFHVGSQILDLETIVQALSDARELIEE 194 (368)
T ss_pred HHHHHH-hCC-CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 999997 888 999999999987432 233556666555443
No 32
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.77 E-value=7.1e-17 Score=142.63 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL- 87 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~- 87 (200)
.|++.|++|++.+++..+. .+++++.++|+.+...+ +.+.+.| .+|.|++..|+...++. ++. +| .+.|+.
T Consensus 8 ~d~~~l~~n~~~l~~~~~~--~~~~~~yavKaN~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~~G~~~~~I--~~~~p~k 82 (373)
T cd06828 8 YDEATIRENYRRLKEAFSG--PGFKICYAVKANSNLAILKLLAEEG-LGADVVSGGELYRALKAGFPPERI--VFTGNGK 82 (373)
T ss_pred EcHHHHHHHHHHHHHhhCC--CCcEEEEEehhCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCCcccE--EEeCCCC
Confidence 3567777888777777653 46899999999888665 7788999 89999999999998887 443 45 555765
Q ss_pred ChHHHHhHhccCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEE------------eCCCCCCcCCCChhhHHHH
Q 028985 88 QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV------------NTSGEESKSGIDPSSCLGI 154 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkv------------dtG~em~R~G~~~e~~~~~ 154 (200)
..++++.+++ .+ .+.++||.+.++.|.+.+.+.++ +++|+|.| |||.+.+|.|+.++++.++
T Consensus 83 ~~~~l~~a~~----~g~~~~~ids~~el~~l~~~a~~~~~-~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~e~~~~ 157 (373)
T cd06828 83 SDEELELALE----LGILRINVDSLSELERLGEIAPELGK-GAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEA 157 (373)
T ss_pred CHHHHHHHHH----cCCeEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHH
Confidence 6788888883 56 88999999999999999988887 89998866 4674449999999999999
Q ss_pred HHHHHhcCCCeEEeEEEeecCCC
Q 028985 155 VEHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 155 ~~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
++.+. +++++++.|+++|+++.
T Consensus 158 ~~~~~-~~~~l~l~Gi~~H~gs~ 179 (373)
T cd06828 158 YRRAK-ELPGLKLVGLHCHIGSQ 179 (373)
T ss_pred HHHHH-hCCCCcEEEEEEecCCC
Confidence 99998 88999999999999864
No 33
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.74 E-value=1.7e-16 Score=143.26 Aligned_cols=155 Identities=13% Similarity=0.080 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCCCChH
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGHLQSN 90 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~~~~~ 90 (200)
.+.|++|++.+++..+..+.++++..++|+++...+ +.+.+.|+ +|.|+++.|+...++. ++.+ | .+.|+....
T Consensus 17 ~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~~il~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~~~g~~k~~ 93 (423)
T cd06842 17 PQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVRGDRI--VATGPAKTD 93 (423)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCHHHHHHHHHcCC-CEEECCHHHHHHHHHCCCCCCeE--EEECCCCCH
Confidence 445555555555444322346789999999998776 88889998 9999999999998887 4433 6 566887664
Q ss_pred H-HHhHhccCCCccEEEeeCcHHHHHHHHHHHHh-cCCCCeeEEEEEeCCC--CCCcCCCChhhHHHHHHHHHhcC-CCe
Q 028985 91 K-AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTSG--EESKSGIDPSSCLGIVEHVRLRC-PNL 165 (200)
Q Consensus 91 ~-~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~-~g~~~~~v~lkvdtG~--em~R~G~~~e~~~~~~~~i~~~~-~~l 165 (200)
+ ++.+++ .++..++||.+.++.|.+.+++ .+. +++|+|.||+|. .|+|.|+.++++.++++.+. ++ +++
T Consensus 94 ~~i~~a~~----~gi~i~vDs~~el~~l~~~a~~~~~~-~~~v~lRIn~~~~~~~sRfGi~~~e~~~~~~~i~-~~~~~l 167 (423)
T cd06842 94 EFLWLAVR----HGATIAVDSLDELDRLLALARGYTTG-PARVLLRLSPFPASLPSRFGMPAAEVRTALERLA-QLRERV 167 (423)
T ss_pred HHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCCC-CCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCC
Confidence 4 777763 6778999999999999999987 776 899999999973 47999999899999999998 88 899
Q ss_pred EEeEEEeecCCC
Q 028985 166 EFSGLMTIGMPD 177 (200)
Q Consensus 166 ~~~GlmTh~a~~ 177 (200)
++.||++|+++.
T Consensus 168 ~l~Glh~H~gs~ 179 (423)
T cd06842 168 RLVGFHFHLDGY 179 (423)
T ss_pred eEEEEEEEcCCC
Confidence 999999999985
No 34
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=99.74 E-value=2.8e-16 Score=138.64 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCCC-
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGHL- 87 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~~- 87 (200)
.+++.|++|++.+++..+ +.+++.++|+++...+ +.+.+.|+ +|.|+++.|+...++. ++.+ | .+-|+.
T Consensus 7 id~~~l~~N~~~~~~~~~----~~~~~~avKAN~~~~v~~~l~~~G~-g~~vaS~~E~~~~~~~G~~~~~i--~~~~~~k 79 (362)
T cd00622 7 VDLGDVVRKYRRWKKALP----RVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVSPERI--IFANPCK 79 (362)
T ss_pred EeHHHHHHHHHHHHHHCC----CCeEEEEeccCCCHHHHHHHHHcCC-CeEecCHHHHHHHHHcCCCcceE--EEcCCCC
Confidence 356677777777776653 4689999999998776 77889999 9999999999999988 4433 4 455755
Q ss_pred ChHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCC------cCCCChhhHHHHHHHHHh
Q 028985 88 QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEES------KSGIDPSSCLGIVEHVRL 160 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~------R~G~~~e~~~~~~~~i~~ 160 (200)
..++++.+++ .++ ...+||+++++.+.+.+. +. ++.++|++|+| |+ |.|+.++++.++++.+.
T Consensus 80 ~~~~l~~a~~----~gi~~~~~ds~~el~~l~~~~~--~~-~v~vri~~~~~--~~~~~~~sRfGi~~~~~~~~~~~~~- 149 (362)
T cd00622 80 SISDIRYAAE----LGVRLFTFDSEDELEKIAKHAP--GA-KLLLRIATDDS--GALCPLSRKFGADPEEARELLRRAK- 149 (362)
T ss_pred CHHHHHHHHH----cCCCEEEECCHHHHHHHHHHCC--CC-EEEEEEeeCCC--CCCCcccCCCCCCHHHHHHHHHHHH-
Confidence 7788888884 344 345799999999998874 34 78899999999 87 79999999999999887
Q ss_pred cCCCeEEeEEEeecCCCCC------CchHHHHHHHHHHHhccccC
Q 028985 161 RCPNLEFSGLMTIGMPDYT------STPENFRVMDFSFRRAHVLL 199 (200)
Q Consensus 161 ~~~~l~~~GlmTh~a~~~~------~~~~~F~~l~~~~~~~~~~~ 199 (200)
. .++++.|+++|+++... ++...|.++.+.+++.+..+
T Consensus 150 ~-~~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (362)
T cd00622 150 E-LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKL 193 (362)
T ss_pred H-cCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6 58999999999987442 24455556665555544433
No 35
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.73 E-value=1.5e-16 Score=140.60 Aligned_cols=160 Identities=19% Similarity=0.279 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCc--cccccCC
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDI--KWHFVGH 86 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i--~~~~iG~ 86 (200)
+-.+++++.+||..+++.+++ .++++.|++|+|.+.++ +..+++|+..+-++++.|++.+....-.+| .+.+.|.
T Consensus 21 ~liD~dr~~~Ni~r~qa~~~~--~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi~dIl~a~p~~~~ 98 (368)
T COG3616 21 ALIDLDRLDGNIDRMQARADD--HGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGIDDILLAYPLPGR 98 (368)
T ss_pred hhhhHHHHhhhHHHHHHhccc--cCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCccceEEecCCCch
Confidence 457899999999999999887 68999999999999887 778999999999999999999998843443 4434343
Q ss_pred CChHHHHhHhccCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCCC
Q 028985 87 LQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPN 164 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~~ 164 (200)
-....+.++. ...+ +...+||.+.++.+.+.+...|+ +++|+|++|+| ++|.|+.. +....+...+. ..++
T Consensus 99 ~~~~~L~~l~---~~~~~~~~~iDs~~~~~~l~~~~~~~~~-pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~-~~~~ 171 (368)
T COG3616 99 AALAALAELL---ADPPRISVLIDSVEQLDALAALARDAGK-PLRVLIEIDSG--LHRSGVRTPEVAEALAAEIA-AAPG 171 (368)
T ss_pred hHHHHHHHhc---CCCCceEEEeCCHHHHHHHHHHHHhcCC-CeeEEEEeCCC--CCccCcCChHHHHHHHHhhh-hccc
Confidence 3333355555 3355 88899999999999999999998 99999999999 99999987 56666677777 8899
Q ss_pred eEEeEEEeecCCCC
Q 028985 165 LEFSGLMTIGMPDY 178 (200)
Q Consensus 165 l~~~GlmTh~a~~~ 178 (200)
|++.|+|||.++..
T Consensus 172 l~~~Gv~~y~gh~~ 185 (368)
T COG3616 172 LRLAGVMTYPGHSY 185 (368)
T ss_pred eEEeeeeccccccc
Confidence 99999999997743
No 36
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.73 E-value=7.8e-16 Score=136.75 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCC-CCccccccCC-CCh
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLP-EDIKWHFVGH-LQS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~-~~i~~~~iG~-~~~ 89 (200)
+++.|++|++.+++..+ +++++++++|+.+...+ +.+.+ +..+|.|++..|+...++..+ .+| .+.|+ ...
T Consensus 8 d~~~l~~N~~~l~~~~~---~~~~i~yavKaN~~~~vl~~l~~-~g~g~dvaS~~E~~~~~~~~~~~~I--~~~gp~k~~ 81 (377)
T cd06843 8 DLAALRAHARALRASLP---PGCELFYAIKANSDPPILRALAP-HVDGFEVASGGEIAHVRAAVPDAPL--IFGGPGKTD 81 (377)
T ss_pred cHHHHHHHHHHHHHhcC---CCCeEEEEeccCCCHHHHHHHHH-cCCcEEEeCHHHHHHHHhcCCCCeE--EEeCCCCCH
Confidence 46667777777766653 36789999999998776 55544 568999999999999888643 346 45576 345
Q ss_pred HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC--------CC----cCCCChhhHHHHHH
Q 028985 90 NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE--------ES----KSGIDPSSCLGIVE 156 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e--------m~----R~G~~~e~~~~~~~ 156 (200)
..++.+++ .++ ..+|||.+.++.|.+.+.+.++ +++|+|.||+|-+ |+ |.|+.++++.++++
T Consensus 82 ~~l~~a~~----~gi~~i~vds~~el~~l~~~a~~~~~-~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~ 156 (377)
T cd06843 82 SELAQALA----QGVERIHVESELELRRLNAVARRAGR-TAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALE 156 (377)
T ss_pred HHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHHcCC-CceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHH
Confidence 66777773 454 3469999999999999988887 9999999999611 33 99999999999999
Q ss_pred HHHhcCCCeEEeEEEeecCCC
Q 028985 157 HVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~~ 177 (200)
.+. .++++++.||++|+++.
T Consensus 157 ~~~-~~~~l~~~Glh~H~gs~ 176 (377)
T cd06843 157 LLR-DLPNIRLRGFHFHLMSH 176 (377)
T ss_pred HHH-hCCCccEEEEEEEcCcC
Confidence 998 88999999999999864
No 37
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.71 E-value=6.9e-16 Score=137.15 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+++.|++|++.+++..++...+++++.++|+.....+ +.+.+.|+..+ |++..|+...++. ++. +| .+-|+. .
T Consensus 13 d~~~l~~n~~~l~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~~~d-vaS~~E~~~~~~~G~~~~~I--i~~g~~k~ 89 (379)
T cd06841 13 DEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAE-VVSAMEYELALKLGVPGKRI--IFNGPYKS 89 (379)
T ss_pred eHHHHHHHHHHHHHHHhhcCCCeEEEEEehhcccHHHHHHHHHcCCeEE-EeCHHHHHHHHHcCCChHHE--EEECCCCC
Confidence 4555666666665555432235789999999887665 77889999888 7889999998887 433 35 455876 4
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC---CCcCCCChhhHHHHHHHHH--hcCC
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE---ESKSGIDPSSCLGIVEHVR--LRCP 163 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e---m~R~G~~~e~~~~~~~~i~--~~~~ 163 (200)
.+.++.+++ .+++.+|||.+.++.|.+.+.+.++ +.+|+|.||++.+ |+|.|+.++++.++++.+. ++.+
T Consensus 90 ~~~l~~a~~----~g~~i~ids~~el~~l~~~~~~~~~-~~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~~~~~~~~ 164 (379)
T cd06841 90 KEELEKALE----EGALINIDSFDELERILEIAKELGR-VAKVGIRLNMNYGNNVWSRFGFDIEENGEALAALKKIQESK 164 (379)
T ss_pred HHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-cceEEEEECCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCC
Confidence 578888884 5688999999999999999988887 8999999999766 9999999988766665554 0448
Q ss_pred CeEEeEEEeecCCCC
Q 028985 164 NLEFSGLMTIGMPDY 178 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~ 178 (200)
++++.|+++|+++..
T Consensus 165 ~l~~~Glh~H~gs~~ 179 (379)
T cd06841 165 NLSLVGLHCHVGSNI 179 (379)
T ss_pred CeeEEEEEecCCCcc
Confidence 999999999998764
No 38
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.71 E-value=8.6e-16 Score=137.98 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCC-CC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGH-LQ 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~-~~ 88 (200)
+++.|++|++.+++..+. .+++++.++|+.+...+ +.+.+.|+ +|.|++..|+...++. ++. +| .+-|+ ..
T Consensus 31 d~~~l~~n~~~l~~~~~~--~~~~i~yavKaN~~~~vl~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~~~gp~k~ 105 (417)
T TIGR01048 31 DEETIRERFRAYKEAFGG--AYSLVCYAVKANSNLALLRLLAELGS-GFDVVSGGELYRALAAGFPPEKI--VFNGNGKS 105 (417)
T ss_pred eHHHHHHHHHHHHHhhCC--CCceEEEEehhCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCcceE--EEeCCCCC
Confidence 577788888888777643 25899999999988666 78889996 9999999999998887 443 35 44576 47
Q ss_pred hHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe------------CCCCCCcCCCChhhHHHHH
Q 028985 89 SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDPSSCLGIV 155 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd------------tG~em~R~G~~~e~~~~~~ 155 (200)
.++++.+++ .++. .++||.+.++.|.+.+.+.++ +++|+|.|| ||.+.+|.|+.++++.+++
T Consensus 106 ~~~l~~a~~----~gi~~i~iDs~~el~~l~~~a~~~~~-~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~~~~~~~~~ 180 (417)
T TIGR01048 106 RAELERALE----LGIRCINVDSESELELLNEIAPELGK-KARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAY 180 (417)
T ss_pred HHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHH
Confidence 788888883 6775 899999999999999988887 899988877 4544499999999999999
Q ss_pred HHHHhcCCCeEEeEEEeecCCC
Q 028985 156 EHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 156 ~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
+.+. +++++++.||++|+++.
T Consensus 181 ~~~~-~~~~l~l~Glh~H~gs~ 201 (417)
T TIGR01048 181 LYAL-QLPHLELVGIHCHIGSQ 201 (417)
T ss_pred HHHH-hCCCCCEEEEEEeCCCC
Confidence 9998 89999999999999874
No 39
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.70 E-value=9e-16 Score=136.13 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CC-CCccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LP-EDIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~-~~i~~~~iG~~-~ 88 (200)
+++.|++|++.+++..+ .+++++.++|++....+ +.+.+.| .+|.|++..|+...++. ++ .+| .+.|+. +
T Consensus 13 d~~~l~~n~~~l~~~~~---~~~~~~yavKan~~~~v~~~l~~~g-~g~~vaS~~E~~~~~~~G~~~~~I--~~~~~~k~ 86 (382)
T cd06839 13 DRDRVRERYAALRAALP---PAIEIYYSLKANPNPALVAHLRQLG-DGAEVASAGELALALEAGVPPEKI--LFAGPGKS 86 (382)
T ss_pred eHHHHHHHHHHHHHhcC---CCcEEEEEeccCCCHHHHHHHHHcC-CCEEEeCHHHHHHHHHcCCCHHHE--EEeCCCCC
Confidence 45666777776666553 35799999999998766 7677776 89999999999998887 43 246 456774 7
Q ss_pred hHHHHhHhccCCCcc-EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC-------C----CCCCcCCCChhhHHHHHH
Q 028985 89 SNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-------S----GEESKSGIDPSSCLGIVE 156 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~-~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt-------G----~em~R~G~~~e~~~~~~~ 156 (200)
.+.++.+++ .+ ...+|||.+.++.|.+.+++.+. +++|+|+||+ | ++.+|.|+.++++.++++
T Consensus 87 ~~~l~~a~~----~g~~~i~vds~~el~~l~~~a~~~~~-~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~~~~~~~~ 161 (382)
T cd06839 87 DAELRRAIE----AGIGTINVESLEELERIDALAEEHGV-VARVALRINPDFELKGSGMKMGGGPSQFGIDVEELPAVLA 161 (382)
T ss_pred HHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCccccCCCCCCcCCCHHHHHHHHH
Confidence 788888883 56 68899999999999999988887 8999999996 3 223899999999999999
Q ss_pred HHHhcCCCeEEeEEEeecCC
Q 028985 157 HVRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~ 176 (200)
.+. +++++++.||+.|.++
T Consensus 162 ~~~-~~~~l~l~Glh~h~gs 180 (382)
T cd06839 162 RIA-ALPNLRFVGLHIYPGT 180 (382)
T ss_pred HHH-hCCCCcEEEEEEecCc
Confidence 997 8899999999999775
No 40
>PLN02537 diaminopimelate decarboxylase
Probab=99.70 E-value=2.4e-15 Score=135.13 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCC-ccccccCCC-Ch
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPED-IKWHFVGHL-QS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~-i~~~~iG~~-~~ 89 (200)
+++.|++|++.+++..++ .++++.+++|+++...+ +.+.+.|+..++++..++...+...++.+ | .+.|+. ..
T Consensus 24 d~~~l~~N~~~~~~~~~~--~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al~~G~~~~~i--i~~g~~k~~ 99 (410)
T PLN02537 24 SKPQITRNYEAYKEALEG--LRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRC--IFNGNGKLL 99 (410)
T ss_pred eHHHHHHHHHHHHHHhcc--CCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCcceE--EEECCCCCH
Confidence 567777777777766643 35679999999998776 77889999999998876666653335554 4 344544 56
Q ss_pred HHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe------------CCCCC--CcCCCChhhHHHHH
Q 028985 90 NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEE--SKSGIDPSSCLGIV 155 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd------------tG~em--~R~G~~~e~~~~~~ 155 (200)
+.++.+++ .++..++||.+.++.|.+.+++.++ +++|+|.|| || | +|.|+.++++.+++
T Consensus 100 ~~l~~a~~----~gv~i~ids~~el~~l~~~a~~~~~-~~~v~lRvnp~~~~~~~~~i~tG--~~~sRfGi~~~~~~~~~ 172 (410)
T PLN02537 100 EDLVLAAQ----EGVFVNVDSEFDLENIVEAARIAGK-KVNVLLRINPDVDPQVHPYVATG--NKNSKFGIRNEKLQWFL 172 (410)
T ss_pred HHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCccccC--CCCCCCCCCHHHHHHHH
Confidence 77777773 6778999999999999999988887 999999998 55 6 99999999999999
Q ss_pred HHHHhcCC-CeEEeEEEeecCCC
Q 028985 156 EHVRLRCP-NLEFSGLMTIGMPD 177 (200)
Q Consensus 156 ~~i~~~~~-~l~~~GlmTh~a~~ 177 (200)
+.+. +++ ++++.|+++|+++.
T Consensus 173 ~~~~-~~~~~l~l~Glh~H~gs~ 194 (410)
T PLN02537 173 DAVK-AHPNELKLVGAHCHLGST 194 (410)
T ss_pred HHHH-hCCCCCcEEEEEeccCCC
Confidence 9997 888 99999999999875
No 41
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.64 E-value=2.6e-14 Score=127.79 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+++.|++|++.+++..+ .+++++.++|+++...+ +.+. .+..+|.|++..|+...++. ++. +| .+.|+. .
T Consensus 31 d~~~l~~n~~~l~~~~~---~~~~i~yavKaN~~~~vl~~l~-~~g~g~dvaS~~E~~~~~~~G~~~~~I--~~~gp~k~ 104 (398)
T TIGR03099 31 DRGLVSERVAALRKALP---EELAIHYAVKANPMPALLAHMA-PLVDGFDVASAGELAVALDTGYDPGCI--SFAGPGKT 104 (398)
T ss_pred eHHHHHHHHHHHHHhcc---ccCcEEEEeccCCCHHHHHHHH-HcCCcEEEeCHHHHHHHHHcCCChhHE--EEeCCCCC
Confidence 56777888887777663 35789999999888666 5555 46789999999999998887 444 36 556875 6
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCC-----CC------CcCCCChhhHHHHHHH
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-----EE------SKSGIDPSSCLGIVEH 157 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~-----em------~R~G~~~e~~~~~~~~ 157 (200)
.+.++.+++ .+++.++||.+.++.|.+.+.+.++ +++|+|.||++. +| +|.|+.++++.++++.
T Consensus 105 ~~~l~~a~~----~gv~i~vDs~~el~~l~~~a~~~~~-~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~~~~~~~ 179 (398)
T TIGR03099 105 DAELRRALA----AGVLINVESLRELNRLAALSEALGL-RARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVPAALAF 179 (398)
T ss_pred HHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCcccccCCCCCcCCCCHHHHHHHHHH
Confidence 788888883 6788999999999999999988887 899999999731 25 9999999999999999
Q ss_pred HHhcCCCeEEeEEEeecCC
Q 028985 158 VRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 158 i~~~~~~l~~~GlmTh~a~ 176 (200)
+. +. ++++.|+..|.+.
T Consensus 180 ~~-~~-~l~l~Glh~h~gs 196 (398)
T TIGR03099 180 IK-AA-DLDFQGFHIFAGS 196 (398)
T ss_pred HH-hC-CCeEEEEEecccc
Confidence 97 76 8999999766654
No 42
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=99.15 E-value=2.9e-09 Score=96.35 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-----CccccccC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-----DIKWHFVG 85 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-----~i~~~~iG 85 (200)
+++.|++|++++++ . + ++...+|+|+...+ +.+.+.|+ .|-|++..|+...+.. ++. .| .+-|
T Consensus 32 d~~~l~~n~~~l~~-~----~--~i~yavKan~~~~il~~~~~~G~-g~dvaS~~E~~~a~~~G~~~~~~~~~I--i~~g 101 (420)
T PRK11165 32 DADIIRRRIAQLRQ-F----D--VIRFAQKACSNIHILRLMREQGV-KVDAVSLGEIERALAAGYKPGTEPDEI--VFTA 101 (420)
T ss_pred cHHHHHHHHHHHhc-c----C--cceEEehhCCCHHHHHHHHHcCC-CEEEeCHHHHHHHHHcCCCCCCCCCeE--EEeC
Confidence 57788888888764 2 1 57899999999776 88889998 8999999999987776 432 35 4558
Q ss_pred CC-ChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCChhhHH
Q 028985 86 HL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCL 152 (200)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~e~~~ 152 (200)
+. ..++++.+++ .++..++||.+.++.|++.+. ..+|+|.||.| +.-+|.|++++++.
T Consensus 102 p~k~~~~l~~a~~----~gv~i~vDs~~el~~i~~~~~-----~~~v~lRvn~~~~~~~~~~~~~~~~~sKFGi~~~~~~ 172 (420)
T PRK11165 102 DVIDRATLARVVE----LKIPVNAGSIDMLDQLGQVSP-----GHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLP 172 (420)
T ss_pred CCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcC-----CCcEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHH
Confidence 77 5678888884 567788999999999998864 35688898876 22356899888888
Q ss_pred HHHHHHHhcCCCeEEeEEEeecCCC
Q 028985 153 GIVEHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 153 ~~~~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
.+++.+. . .++++.||++|.++.
T Consensus 173 ~~~~~~~-~-~~l~l~GlH~H~GS~ 195 (420)
T PRK11165 173 AALAVIQ-R-YGLKLVGIHMHIGSG 195 (420)
T ss_pred HHHHHHH-h-CCCcEEEEEEeccCC
Confidence 8877775 4 689999999999863
No 43
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=98.85 E-value=9.7e-07 Score=79.67 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcC---CeeeeccHHHHHHHhcC-CCCC-cc
Q 028985 7 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH---RSFGENYVQEIVDKAPQ-LPED-IK 80 (200)
Q Consensus 7 ~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~---~~fgva~v~Ea~~lr~~-~~~~-i~ 80 (200)
.+.|+.|++.+++-+.......+-. .++++.=-+|+-....+ +.+.+.|+ .+|=|++..|...-... .+.+ +
T Consensus 12 ~~~i~~~~~~l~~af~~~~~~~~~~-~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al~~G~~~~~i- 89 (409)
T cd06830 12 PDILRHRIERLNAAFAKAIEEYGYK-GKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALALLKTPDAL- 89 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcC-CceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHHhcCCCCCCE-
Confidence 3556666666655554322221111 25688888899887665 88889995 58999999998876666 4232 3
Q ss_pred ccccCCCChHHHHhHhccCC-CccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC-----------CCCCcCCCCh
Q 028985 81 WHFVGHLQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-----------GEESKSGIDP 148 (200)
Q Consensus 81 ~~~iG~~~~~~~~~~~~~~~-~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG-----------~em~R~G~~~ 148 (200)
+..-|.-..+.++.+++..+ ..+++.++||.+.++.|.+.+.+.++ +.+|.|-|+.+ +..+|.|+++
T Consensus 90 i~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~-~~~v~lRinp~~~~~~~~~~~~~~~sKFGi~~ 168 (409)
T cd06830 90 IICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGV-KPLLGVRIKLASKGSGKWQESGGDRSKFGLTA 168 (409)
T ss_pred EEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEccCCCCCcceeccCCCCCCCCCCH
Confidence 12223345566676652000 12467899999999999999988886 88888888754 3347899999
Q ss_pred hhHHHHHHHHHhcC-CCeEEeEEEeecCCC
Q 028985 149 SSCLGIVEHVRLRC-PNLEFSGLMTIGMPD 177 (200)
Q Consensus 149 e~~~~~~~~i~~~~-~~l~~~GlmTh~a~~ 177 (200)
+++.++++.+. .. +++++.|+-.|.++.
T Consensus 169 ~~~~~~~~~~~-~~~~~l~l~GlH~H~GSq 197 (409)
T cd06830 169 SEILEVVEKLK-EAGMLDRLKLLHFHIGSQ 197 (409)
T ss_pred HHHHHHHHHHH-hcCcCCeEEEEEEecCCC
Confidence 99999999987 76 589999999999764
No 44
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=98.81 E-value=6e-07 Score=80.19 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCCC-
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHLQ- 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~~- 88 (200)
+++.|++|++.+++..++ ++++.--+|+-....+ +.+.+.|+ +|=|++..|...-... ++. .| .+-|+..
T Consensus 9 d~~~l~~~~~~l~~a~~~---~~~~~yAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~al~~G~~~~~I--i~~gp~K~ 82 (379)
T cd06836 9 DLDGFRALVARLTAAFPA---PVLHTFAVKANPLVPVLRLLAEAGA-GAEVASPGELELALAAGFPPERI--VFDSPAKT 82 (379)
T ss_pred cHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCChhhE--EEeCCCCC
Confidence 455666777666666543 5778778899887665 77888886 7889999998876665 443 36 4557765
Q ss_pred hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHh-cCCCCeeEEEEEeC------------CCCCCcCCCChh--hHHH
Q 028985 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNT------------SGEESKSGIDPS--SCLG 153 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~-~g~~~~~v~lkvdt------------G~em~R~G~~~e--~~~~ 153 (200)
.+.++.+++ .++..++||.+.++.|.+.+.+ .+. +.+|.|-||. |+..+|.|+.++ ++.+
T Consensus 83 ~~~L~~ai~----~gv~i~iDS~~El~~i~~~a~~~~~~-~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~~~~~~~~ 157 (379)
T cd06836 83 RAELREALE----LGVAINIDNFQELERIDALVAEFKEA-SSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDE 157 (379)
T ss_pred HHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCccccccCCCCCCCCcCcchhHHHH
Confidence 467777774 5666799999999999999876 565 7889999874 344689999997 5666
Q ss_pred HHHHHHhcCCCeEEeEEEeecCC
Q 028985 154 IVEHVRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 154 ~~~~i~~~~~~l~~~GlmTh~a~ 176 (200)
+++.+. ..++ +.||..|.++
T Consensus 158 ~~~~~~-~~~~--l~GlH~H~GS 177 (379)
T cd06836 158 IIDAFA-RRPW--LNGLHVHVGS 177 (379)
T ss_pred HHHHHh-cCCC--eEEEEEeccc
Confidence 666654 4444 6799999975
No 45
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=98.78 E-value=1.9e-07 Score=78.56 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCCC-h
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHLQ-S 89 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~~-~ 89 (200)
++.++++++.+.+.... .++++.--+|+-....+ +.+.+.| .+|=|++..|...-... ++. .| .+-|+.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~i~yA~KaN~~~~vl~~l~~~g-~g~dv~S~~El~~a~~~g~~~~~I--i~~gp~k~~ 76 (251)
T PF02784_consen 2 LDRIIERIRAAWKAFLP--YNVKIFYAVKANPNPAVLKILAEEG-CGFDVASPGELELALKAGFPPDRI--IFTGPGKSD 76 (251)
T ss_dssp HHHHHHHHHHHHHHHTT--T-EEEEEEGGGS--HHHHHHHHHTT-CEEEESSHHHHHHHHHTTTTGGGE--EEECSS--H
T ss_pred hHHHHHHHHHHHHhcCC--CCcEEEEEECcCCCHHHHHHHHHcC-CceEEecccchHHHHhhhccccce--eEecCcccH
Confidence 34455565555554433 25899999999777655 8888888 58999999998876666 333 36 4557764 4
Q ss_pred HHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC------------CCCCCcCCCChhh-HHHHHH
Q 028985 90 NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSS-CLGIVE 156 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt------------G~em~R~G~~~e~-~~~~~~ 156 (200)
+.++.+++ ......++||.+.++.|.+.+... +|.|-|+. |+..+|.|+++++ +.++++
T Consensus 77 ~~l~~a~~---~~~~~i~vDs~~el~~l~~~~~~~-----~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~~~~~~~l~ 148 (251)
T PF02784_consen 77 EELEEAIE---NGVATINVDSLEELERLAELAPEA-----RVGLRINPGIGAGSHPKISTGGKDSKFGIDIEEEAEEALE 148 (251)
T ss_dssp HHHHHHHH---HTESEEEESSHHHHHHHHHHHCTH-----EEEEEBE-SESTTTSCHHCSSSHTSSSSBEGGGHHHHHHH
T ss_pred HHHHHHHh---CCceEEEeCCHHHHHHHhccCCCc-----eeeEEEeeccccccccccCCCCCCCcCCcChHHHHHHHHH
Confidence 56777773 223457899999999999988643 45555544 3345799999999 999999
Q ss_pred HHHhcCCCeEEeEEEeecCC
Q 028985 157 HVRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~ 176 (200)
.+. ..+ +++.|+..|.++
T Consensus 149 ~~~-~~~-l~l~GlH~H~gS 166 (251)
T PF02784_consen 149 RAK-ELG-LRLVGLHFHVGS 166 (251)
T ss_dssp HHH-HTT-EEEEEEEE-HCS
T ss_pred hhc-cce-EEEEEeeeeecc
Confidence 997 878 999999999875
No 46
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=98.76 E-value=9.9e-07 Score=79.40 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-Ch
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-QS 89 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~~ 89 (200)
...|++|++.+.+.... .+.++.-.+|+-+...+ +.+.+.| ..|=+++.-|...-.++ ++. .| +|-|+. ..
T Consensus 34 ~~~l~~~~~~~~~a~~~--~~~~i~yAvKAn~~~~il~~l~~~g-~g~Dv~S~gEl~~al~aG~~~~~I--~f~g~~ks~ 108 (394)
T COG0019 34 EATLRRNARELKSAFPG--SGAKVFYAVKANSNPAILRLLAEEG-SGFDVASLGELELALAAGFPPERI--VFSGPAKSE 108 (394)
T ss_pred HHHHHHHHHHHHHHhcc--CCceEEEEEcCCCCHHHHHHHHHhC-CCceecCHHHHHHHHHcCCChhhE--EECCCCCCH
Confidence 45566666666555533 25788888999888666 6666655 67888888888876666 333 36 566665 45
Q ss_pred HHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe------------CCCCCCcCCCChhhHHHHHH
Q 028985 90 NKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDPSSCLGIVE 156 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd------------tG~em~R~G~~~e~~~~~~~ 156 (200)
.++..+++ .++. .++||.+.++.|++.+... +.+|.+-|| ||.+++|.|+.++++.+.++
T Consensus 109 ~ei~~a~e----~gi~~i~vdS~~El~~l~~~a~~~---~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~ 181 (394)
T COG0019 109 EEIAFALE----LGIKLINVDSEEELERLSAIAPGL---VARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLE 181 (394)
T ss_pred HHHHHHHH----cCCcEEEeCCHHHHHHHHHhcccc---CceEEEEECCCCCCccCccccCCccccccCCCHHHHHHHHH
Confidence 67888884 4554 8899999999999998642 355666666 45677999999999888888
Q ss_pred HHHhcCCCeEEeEEEeecCCCC
Q 028985 157 HVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
... +.+++++.||..|-.+-.
T Consensus 182 ~~~-~~~~l~~~Glh~HiGSq~ 202 (394)
T COG0019 182 RAA-KLLGLELVGLHFHIGSQI 202 (394)
T ss_pred HHH-hcCCCceEEEEEeecCCC
Confidence 887 889999999999998743
No 47
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=98.71 E-value=1.5e-06 Score=78.09 Aligned_cols=147 Identities=15% Similarity=0.209 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+++.|+++++.+++.. +++++.=-+|+.+...+ +.+.+.|+ .|=|++..|...-.+. ++. .| .+-|+. +
T Consensus 19 d~~~i~~~~~~l~~~l----p~~~~~YAvKaN~~~~il~~l~~~G~-g~DvaS~gEl~~al~~G~~~~~I--if~gp~K~ 91 (394)
T cd06831 19 DLGKIVKKHSQWQTVM----AQIKPFYTVRCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVSPENI--IYTNPCKQ 91 (394)
T ss_pred EHHHHHHHHHHHHHHC----CCCeEEeeeccCCCHHHHHHHHHcCC-CeEeCCHHHHHHHHhcCCCcCCE--EEeCCCCC
Confidence 4566777777776666 25778778899887665 77888895 7999999999876665 333 36 556776 4
Q ss_pred hHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC----CCC--CCcCCCChhhHHHHHHHHHhc
Q 028985 89 SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT----SGE--ESKSGIDPSSCLGIVEHVRLR 161 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt----G~e--m~R~G~~~e~~~~~~~~i~~~ 161 (200)
.+.++.+++ .++ +.++||.+.++.|.+.+. ..+|.|-|+. ++. .+|.|+.++++.++++.+. .
T Consensus 92 ~~~l~~a~~----~Gv~~i~vDS~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~-~ 161 (394)
T cd06831 92 ASQIKYAAK----VGVNIMTCDNEIELKKIARNHP-----NAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAK-E 161 (394)
T ss_pred HHHHHHHHH----CCCCEEEECCHHHHHHHHHhCC-----CCcEEEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHH-H
Confidence 567777773 565 468999999999987653 3345555544 322 2689999999999999887 6
Q ss_pred CCCeEEeEEEeecCCC
Q 028985 162 CPNLEFSGLMTIGMPD 177 (200)
Q Consensus 162 ~~~l~~~GlmTh~a~~ 177 (200)
. ++++.||-.|.++.
T Consensus 162 ~-~l~~~Gih~HiGS~ 176 (394)
T cd06831 162 L-DVQIVGVKFHVSSS 176 (394)
T ss_pred C-CCeEEEEEEECCCC
Confidence 4 89999999999753
No 48
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=98.62 E-value=3.5e-06 Score=74.98 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC---CCC-CccccccCCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ---LPE-DIKWHFVGHL 87 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~---~~~-~i~~~~iG~~ 87 (200)
+++.|++|++++++ .. +..++.--+|+-....+ +.+.+.|+ +|=+++..|...-.+. .+. .| .+-|+.
T Consensus 18 d~~~l~~~~~~l~~-~~---~~~~~~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I--if~gp~ 90 (368)
T cd06840 18 DLETVRARARQVSA-LK---AVDSLFYAIKANPHPDVLRTLEEAGL-GFECVSIGELDLVLKLFPDLDPRRV--LFTPNF 90 (368)
T ss_pred cHHHHHHHHHHHHh-CC---CCCeEEEEeccCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcccCCCcceE--EEcCCC
Confidence 56777777777653 22 23467888899877665 88888994 7999999999876653 222 35 455776
Q ss_pred C-hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC------------CCCCCcCCCChhhHHHH
Q 028985 88 Q-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSCLGI 154 (200)
Q Consensus 88 ~-~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt------------G~em~R~G~~~e~~~~~ 154 (200)
. .+.++.+++ .++..++||.+.++.+.+.+. ..+|.|-|+. |+..+|.|++++++.++
T Consensus 91 K~~~~l~~a~~----~gv~i~~Ds~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~~~~~~ 161 (368)
T cd06840 91 AARSEYEQALE----LGVNVTVDNLHPLREWPELFR-----GREVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEA 161 (368)
T ss_pred CCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-----cCCEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHH
Confidence 5 467888884 456669999999999888764 2345555554 33468999999999999
Q ss_pred HHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHH
Q 028985 155 VEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDF 190 (200)
Q Consensus 155 ~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~ 190 (200)
++.+. .. ++++.|+-.|.++.-. ..+.|.++.+
T Consensus 162 l~~~~-~~-~l~l~GlhfH~GS~~~-~~~~~~~~~~ 194 (368)
T cd06840 162 RDLAK-KA-GIIVIGLHAHSGSGVE-DTDHWARHGD 194 (368)
T ss_pred HHHHH-hC-CCcEEEEEEECCCCCC-CHHHHHHHHH
Confidence 98886 54 7999999999986321 1234554444
No 49
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=98.61 E-value=4.5e-06 Score=74.71 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCC-ChHH
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHL-QSNK 91 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~-~~~~ 91 (200)
.+.|++|++.+++.... .++++.=.+|+-+...+ +.+.+.|+ +|=+++..|...-..+++..+ .+-|+. ..++
T Consensus 10 ~~~i~~~~~~l~~~~~~--~~~~i~YAvKAN~~~~il~~l~~~g~-G~D~aS~gEl~~al~a~~~~~--i~~~~~k~~~e 84 (380)
T TIGR01047 10 EEKLRKNLEILEHVQQQ--SGAKVLLALKGFAFWGVFPILREYLD-GCTASGLWEAKLAKEEFGKEI--HVYSPAYSEED 84 (380)
T ss_pred HHHHHHHHHHHHHHHhh--cCCEEEEEEcccCChHHHHHHHHHCC-cccccCHHHHHHHHHHCCCcE--EEECCCCCHHH
Confidence 34444555444333221 35788888899877665 77777774 677899999886444455445 233654 5678
Q ss_pred HHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCChhhHHHHHHHHH
Q 028985 92 AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 92 ~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~e~~~~~~~~i~ 159 (200)
++.+++ ...+.++||.+.++.|.+.++..++ ..+|.|-||-+ +..+|.|++++++.+. +
T Consensus 85 l~~a~~----~g~~i~idS~~el~~l~~~a~~~~~-~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~---~- 155 (380)
T TIGR01047 85 VPEIIP----LADHIIFNSLAQWARYRHLVEGKNS-AVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHFEES---L- 155 (380)
T ss_pred HHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHHhHh---H-
Confidence 888883 4567899999999999999977776 77888888764 3358999999876543 1
Q ss_pred hcCCCeEEeEEEeecCCCCCCchHHHHHHHHHH
Q 028985 160 LRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSF 192 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~ 192 (200)
.+++.|+-.|.++. . ..+.|.++.+..
T Consensus 156 ----~~~i~GlH~HiGS~-~-~~~~~~~~i~~~ 182 (380)
T TIGR01047 156 ----LDGINGLHFHTLCE-K-DADALERTLEVI 182 (380)
T ss_pred ----hhcCcEEEEecCCC-C-CHHHHHHHHHHH
Confidence 24677999999865 2 245566665544
No 50
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.53 E-value=4.4e-06 Score=81.93 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC---CCC-CccccccCCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ---LPE-DIKWHFVGHL 87 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~---~~~-~i~~~~iG~~ 87 (200)
+.+.|++|++.+++.. +.+++.--+|+.....+ +.+.+.|+ +|=|+...|.....+. ++. .| .+-|+.
T Consensus 509 d~~~i~~n~~~l~~~~----~~~~i~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I--i~~gp~ 581 (861)
T PRK08961 509 HLPTVRARARALAALA----AVDQRFYAIKANPHPAILRTLEEEGF-GFECVSIGELRRVFELFPELSPERV--LFTPNF 581 (861)
T ss_pred EHHHHHHHHHHHHhcC----CCCcEEEEeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHhcCCCCCCeE--EECCCC
Confidence 5677888887776532 24578888999998766 88889998 9999999999876653 222 35 444776
Q ss_pred C-hHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC------------CCCCCcCCCChhhHHHH
Q 028985 88 Q-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSCLGI 154 (200)
Q Consensus 88 ~-~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt------------G~em~R~G~~~e~~~~~ 154 (200)
. .+.++.+++ .++..++||.+.++.|.+.+.. .+|.|-||. |+..+|.|++++++.++
T Consensus 582 K~~~~l~~A~~----~gv~i~vDS~~EL~~i~~~~~~-----~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~ 652 (861)
T PRK08961 582 APRAEYEAAFA----LGVTVTLDNVEPLRNWPELFRG-----REVWLRIDPGHGDGHHEKVRTGGKESKFGLSQTRIDEF 652 (861)
T ss_pred CCHHHHHHHHH----CCCEEEECCHHHHHHHHHhCCC-----CcEEEEECCCCCCCCCcccccCCCCCCCCCCHHHHHHH
Confidence 4 577777773 5666799999999999987643 234444443 34458899999999999
Q ss_pred HHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHH
Q 028985 155 VEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDF 190 (200)
Q Consensus 155 ~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~ 190 (200)
++.+. . .++++.|+..|.++.-. ..+.|..+.+
T Consensus 653 ~~~~~-~-~~l~l~GlH~H~GS~~~-~~~~~~~~~~ 685 (861)
T PRK08961 653 VDLAK-T-LGITVVGLHAHLGSGIE-TGEHWRRMAD 685 (861)
T ss_pred HHHHH-h-CCCCEEEEEEecCCCCC-CHHHHHHHHH
Confidence 98876 5 68999999999985321 1234554444
No 51
>PRK05354 arginine decarboxylase; Provisional
Probab=98.43 E-value=0.00011 Score=69.95 Aligned_cols=167 Identities=16% Similarity=0.119 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHH-HHHHHHhcCC---eeeeccHHHHHHHhcCCCC-Ccccc
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGHR---SFGENYVQEIVDKAPQLPE-DIKWH 82 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~-i~~~~~~G~~---~fgva~v~Ea~~lr~~~~~-~i~~~ 82 (200)
+.|+.|++.++.......+..+.. .+.++.=-+|+-.... ++.+.+.|.. +|=+++..|...-...... ...+.
T Consensus 72 ~~L~~ri~~L~~aF~~a~~~~~y~-g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~~~~~lIi 150 (634)
T PRK05354 72 DILQDRVRSLNAAFKKAIEEYGYQ-GDYRGVYPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGALIV 150 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC-CCceEEEEeccCChHHHHHHHHHcCCCCceeEEECCHHHHHHHHHcCCCCCcEEE
Confidence 566777777777666555544442 2467888889966654 5888899963 6777888888765555322 22123
Q ss_pred ccCCCChHHHHhHhccCC-CccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEE-----------eCCCCCCcCCCChhh
Q 028985 83 FVGHLQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV-----------NTSGEESKSGIDPSS 150 (200)
Q Consensus 83 ~iG~~~~~~~~~~~~~~~-~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkv-----------dtG~em~R~G~~~e~ 150 (200)
.-|.-..+.++.++...+ ..+++.+|||++.++.|.+.+++.|+ +.+|-|-| +||++.+|.|+++++
T Consensus 151 ~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~-~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~~e 229 (634)
T PRK05354 151 CNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGV-KPRLGVRARLASQGSGKWQSSGGEKSKFGLSATE 229 (634)
T ss_pred cCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCcccCCCCCCCCCCCHHH
Confidence 336444455665541000 13678999999999999999988886 66666655 345677899999999
Q ss_pred HHHHHHHHHhcCCCe-EEeEEEeecCCC
Q 028985 151 CLGIVEHVRLRCPNL-EFSGLMTIGMPD 177 (200)
Q Consensus 151 ~~~~~~~i~~~~~~l-~~~GlmTh~a~~ 177 (200)
+.++++.++ ..+.+ ++.||-.|.++-
T Consensus 230 i~~~i~~lk-~~~~l~~L~GLHfHiGSQ 256 (634)
T PRK05354 230 VLEAVERLR-EAGLLDCLQLLHFHLGSQ 256 (634)
T ss_pred HHHHHHHHH-hCCCCCceEEEEEeCCCC
Confidence 999999998 88877 599999999863
No 52
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=98.42 E-value=6.5e-05 Score=71.34 Aligned_cols=168 Identities=14% Similarity=0.073 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHH-HHHHHHhcC---CeeeeccHHHHHHHhcCC-CCCccc
Q 028985 7 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGH---RSFGENYVQEIVDKAPQL-PEDIKW 81 (200)
Q Consensus 7 ~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~-i~~~~~~G~---~~fgva~v~Ea~~lr~~~-~~~i~~ 81 (200)
.+.|+.|++.++.-.....+..+.. .+.++.=-+|+-.... ++.+.+.|. .+|=+++..|...-.... ..+..+
T Consensus 64 ~~iL~~~i~~l~~aF~~a~~~~~Y~-g~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~p~~~I 142 (624)
T TIGR01273 64 PDILQHRIRSLNDAFANAIEEYQYA-GHYQGVYPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAPI 142 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-CCeeEEEEeccCCcHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCCCCCEE
Confidence 3566777777777666554444432 3567888889966544 588889995 467778888887655543 223222
Q ss_pred cccCCCChHHHHhHhccC-CCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe-----------CCCCCCcCCCChh
Q 028985 82 HFVGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPS 149 (200)
Q Consensus 82 ~~iG~~~~~~~~~~~~~~-~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd-----------tG~em~R~G~~~e 149 (200)
.+-|.-..+.++.++... -..+++.+|||++.++.|.+.+++.|+ +.+|-|-|+ ||++.+|.|++++
T Consensus 143 i~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~-~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~~ 221 (624)
T TIGR01273 143 VCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGV-KPKLGLRARLASKGSGKWASSGGEKSKFGLSAT 221 (624)
T ss_pred EeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCC-CceEEEEEecCCCCCCCcccCCCCCCCCCCCHH
Confidence 445755555566554100 014678899999999999999988886 767766664 4556689999999
Q ss_pred hHHHHHHHHHhcCCCeE-EeEEEeecCCC
Q 028985 150 SCLGIVEHVRLRCPNLE-FSGLMTIGMPD 177 (200)
Q Consensus 150 ~~~~~~~~i~~~~~~l~-~~GlmTh~a~~ 177 (200)
++.++++.+. ..+.+. +.||-.|.++-
T Consensus 222 ei~~~i~~lk-~~~~l~~L~GLHfHiGSQ 249 (624)
T TIGR01273 222 QILEVVRLLE-QNGLLDCLKLLHFHIGSQ 249 (624)
T ss_pred HHHHHHHHHH-hcCCCCceEEEEEeCCCC
Confidence 9999999997 877664 89999999764
No 53
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=98.27 E-value=7.8e-05 Score=65.81 Aligned_cols=156 Identities=8% Similarity=0.001 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCC-ChH
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHL-QSN 90 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~-~~~ 90 (200)
+++.|++|++.+++.... +++++.=.+|+-+...+ +.+.+.|+ +|=|++..|...-+...+..+ .+.|+. ..+
T Consensus 7 d~~~i~~~~~~~~~~~~~--~~~~i~YAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~a~~~~~~~~--i~~~~~k~~~ 81 (346)
T cd06829 7 DEAKLRRNLEILKRVQER--SGAKILLALKAFSMWSVFPLIREYLD-GTTASSLFEARLGREEFGGEV--HTYSPAYRDD 81 (346)
T ss_pred eHHHHHHHHHHHHHHHhc--cCCEEEEEEhhcCCHHHHHHHHHhCC-ccEecCHHHHHHHHHHCCCce--EEECCCCCHH
Confidence 455666676666653322 46788888999887665 77888884 789999999886554433333 222554 445
Q ss_pred HHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCChhhHHHHHHHH
Q 028985 91 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHV 158 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~e~~~~~~~~i 158 (200)
+++.+++ .....++||.+.++.|.+.+.. + +.+|.|-||.+ +..+|.|+.++++.+ .
T Consensus 82 el~~a~~----~~~~~~~Ds~~EL~~l~~~~~~--~-~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~~~---~- 150 (346)
T cd06829 82 EIDEILR----LADHIIFNSLSQLERFKDRAKA--A-GISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEE---E- 150 (346)
T ss_pred HHHHHHH----cCCEEEECCHHHHHHHHHHHhc--c-CCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHhhh---h-
Confidence 6777773 3457899999999999998864 3 66788888754 235789998876542 1
Q ss_pred HhcCCCeEEeEEEeecCCCCCCchHHHHHHHH
Q 028985 159 RLRCPNLEFSGLMTIGMPDYTSTPENFRVMDF 190 (200)
Q Consensus 159 ~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~ 190 (200)
-++++.|+-.|.++.-+ .+.|.++.+
T Consensus 151 ----~~~~v~Glh~HvGS~~~--~~~~~~~~~ 176 (346)
T cd06829 151 ----DLDGIEGLHFHTLCEQD--FDALERTLE 176 (346)
T ss_pred ----hhcCceEEEEccCcccC--HHHHHHHHH
Confidence 13678899999975432 334444443
No 54
>PLN02439 arginine decarboxylase
Probab=98.15 E-value=0.00099 Score=62.66 Aligned_cols=167 Identities=18% Similarity=0.126 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCH-HHHHHHHHhcCC---eeeeccHHHHHHHhcCC-CC--Ccc
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPV-SLIRQVYDAGHR---SFGENYVQEIVDKAPQL-PE--DIK 80 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~-~~i~~~~~~G~~---~fgva~v~Ea~~lr~~~-~~--~i~ 80 (200)
+.|+.|++.+..-.....+..+.. .+.+..=-+|+-.. ..++.+.+.|.. ++=+++..|...-.... .. ...
T Consensus 7 d~l~~ri~~L~~aF~~ai~~~~y~-~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~~~~i 85 (559)
T PLN02439 7 DVLKNRLESLQSAFDYAIQSQGYN-SHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDAF 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC-CCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCCCCeE
Confidence 456777777777665544433332 34677777899665 445888888853 46678888877655442 22 221
Q ss_pred ccccCCCChHHHHhHhcc-CCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe-----------CCCCCCcCCCCh
Q 028985 81 WHFVGHLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDP 148 (200)
Q Consensus 81 ~~~iG~~~~~~~~~~~~~-~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd-----------tG~em~R~G~~~ 148 (200)
+.--|.-..+.++.++.. .-..+++.++||++.++.|.+.+++.|+ +..|-|-|+ ||++-+|.|+++
T Consensus 86 i~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~-~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~~ 164 (559)
T PLN02439 86 LICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGV-RPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTA 164 (559)
T ss_pred EECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCC-CceEEEEEecCCCCCCCccccCCCCCCCCCCH
Confidence 222243344445543310 0014567899999999999999988875 555554442 566779999999
Q ss_pred hhHHHHHHHHHhcCCCeE-EeEEEeecCCC
Q 028985 149 SSCLGIVEHVRLRCPNLE-FSGLMTIGMPD 177 (200)
Q Consensus 149 e~~~~~~~~i~~~~~~l~-~~GlmTh~a~~ 177 (200)
+++.++++.+. ..+.+. +.||-.|.++-
T Consensus 165 ~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQ 193 (559)
T PLN02439 165 TEIVRVVRKLR-KEGMLDCLQLLHFHIGSQ 193 (559)
T ss_pred HHHHHHHHHHH-hCCCCCceEEEEEeCCCC
Confidence 99999999998 888887 99999999864
No 55
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=97.64 E-value=0.0033 Score=56.60 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCC-CccccccCCC-Ch
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPE-DIKWHFVGHL-QS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~-~i~~~~iG~~-~~ 89 (200)
++..|.++....++... .|+..-.||.-....+ +.|...|+-.+.++.-+..+.+.-.++. .| .+.++. +.
T Consensus 62 Dl~~I~Rkl~~w~~~Lp----rV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~ri--IyanpcK~~ 135 (448)
T KOG0622|consen 62 DLGAIERKLEAWKKALP----RVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERI--IYANPCKQV 135 (448)
T ss_pred cHHHHHHHHHHHHHhcc----cCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHe--EecCCCccH
Confidence 35667777777666663 4777777899777665 7777889777777777776665555433 36 345666 55
Q ss_pred HHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC------CCcCCCChhhHHHHHHHHHhcCC
Q 028985 90 NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRCP 163 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e------m~R~G~~~e~~~~~~~~i~~~~~ 163 (200)
..++.++. .--.+.++|+.+.+.++.+. .. ..+++|-|.|... -.+.|...+++..+++..+ .+
T Consensus 136 s~IkyAa~---~gV~~~tfDne~el~kv~~~----hP-~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lLd~ak-~l- 205 (448)
T KOG0622|consen 136 SQIKYAAK---HGVSVMTFDNEEELEKVAKS----HP-NANLLLRIATDDSTATCRLNLKFGCSLDNCRHLLDMAK-EL- 205 (448)
T ss_pred HHHHHHHH---cCCeEEeecCHHHHHHHHHh----CC-CceEEEEEccCCCcccccccCccCCCHHHHHHHHHHHH-Hc-
Confidence 67777773 23344678998877766654 33 6677787776522 3477888899999999886 65
Q ss_pred CeEEeEEEeecCCC
Q 028985 164 NLEFSGLMTIGMPD 177 (200)
Q Consensus 164 ~l~~~GlmTh~a~~ 177 (200)
++++.|+.-|.++.
T Consensus 206 ~lnvvGvsfHvGSg 219 (448)
T KOG0622|consen 206 ELNVVGVSFHVGSG 219 (448)
T ss_pred CceEEEEEEEecCC
Confidence 89999999999864
No 56
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=5 Score=31.82 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCCcCCCCh--hhHHHHHHHHHhcCCCeEEeEE
Q 028985 131 VLVQVNTSGEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGL 170 (200)
Q Consensus 131 v~lkvdtG~em~R~G~~~--e~~~~~~~~i~~~~~~l~~~Gl 170 (200)
|+|-|||. +++||.| +.+..+++... -.++.+-|+
T Consensus 27 VlLIVNtA---SkCGfTpQYegLe~Ly~ky~--~~Gf~VLgF 63 (162)
T COG0386 27 VLLIVNTA---SKCGFTPQYEGLEALYKKYK--DKGFEVLGF 63 (162)
T ss_pred EEEEEEcc---cccCCcHhHHHHHHHHHHHh--hCCcEEEec
Confidence 89999997 9999999 77888887764 378888885
No 57
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=69.42 E-value=71 Score=28.53 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=75.6
Q ss_pred EEEeccCCH----HHHHHHHHhcCC--eeeeccHHHHHHHhcC---CCCCc--cccccCCCChHHHHhHhccCCCccEEE
Q 028985 38 VAVSKTKPV----SLIRQVYDAGHR--SFGENYVQEIVDKAPQ---LPEDI--KWHFVGHLQSNKAKTLLGGVPNLDMVE 106 (200)
Q Consensus 38 ~aVvKahg~----~~i~~~~~~G~~--~fgva~v~Ea~~lr~~---~~~~i--~~~~iG~~~~~~~~~~~~~~~~~~~~~ 106 (200)
|.-++++.. .+|+++.++|++ .++|...++|..+.+- .+-|+ .+||--.+....+..-+ ....+-|
T Consensus 25 Mtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~---dkiRINP 101 (346)
T TIGR00612 25 MTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGV---AKVRINP 101 (346)
T ss_pred cCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhcc---CeEEECC
Confidence 444445554 345677889988 5888888888865442 33332 22442111111112112 1122222
Q ss_pred -eeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC----CCcCC-CChhhH-HHHHHHHHhcCCCeEEeE-EEeecCCCC
Q 028985 107 -GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSG-IDPSSC-LGIVEHVRLRCPNLEFSG-LMTIGMPDY 178 (200)
Q Consensus 107 -sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e----m~R~G-~~~e~~-~~~~~~i~~~~~~l~~~G-lmTh~a~~~ 178 (200)
.+.+.+..+.+-+.|++.+. ++++ =||.|.= +.|.| ..|+.+ ...++++. -+..+.|.- +.|.=+++.
T Consensus 102 GNig~~e~v~~vv~~ak~~~i-pIRI--GVN~GSL~~~~~~kyg~~t~eamveSAl~~v~-~le~~~F~diviS~KsSdv 177 (346)
T TIGR00612 102 GNIGFRERVRDVVEKARDHGK-AMRI--GVNHGSLERRLLEKYGDATAEAMVQSALEEAA-ILEKLGFRNVVLSMKASDV 177 (346)
T ss_pred CCCCCHHHHHHHHHHHHHCCC-CEEE--ecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHH-HHHHCCCCcEEEEEEcCCH
Confidence 56778899999999998876 6555 7999832 13666 455322 22233332 222222222 334444333
Q ss_pred CCchHHHHHHHHHH
Q 028985 179 TSTPENFRVMDFSF 192 (200)
Q Consensus 179 ~~~~~~F~~l~~~~ 192 (200)
....+.++.+.+..
T Consensus 178 ~~~i~ayr~la~~~ 191 (346)
T TIGR00612 178 AETVAAYRLLAERS 191 (346)
T ss_pred HHHHHHHHHHHhhC
Confidence 23345555555443
No 58
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=64.85 E-value=1.3e+02 Score=29.24 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCee-ee---------ccHHHHHHHhcCCCCCccccccCCCChHHHHhHhccCCCccEEEeeCc---HH
Q 028985 46 VSLIRQVYDAGHRSF-GE---------NYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN---EK 112 (200)
Q Consensus 46 ~~~i~~~~~~G~~~f-gv---------a~v~Ea~~lr~~~~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~~sv~s---~~ 112 (200)
...+..+.+.|+..| ++ +|+.|..+..+.....+..-.+.....+.+..++ +.+|++..+.+ .+
T Consensus 142 s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~---~~~DiVi~vsDdy~~~ 218 (637)
T TIGR03693 142 TKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAF---EPADWVLYVSDNGDID 218 (637)
T ss_pred HHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhh---cCCcEEEEECCCCChH
Confidence 344577889999998 55 4455776666654444433455544567788888 45888877655 46
Q ss_pred HHHHHHHHHHhcCC
Q 028985 113 IANHLDKAVSNLGR 126 (200)
Q Consensus 113 ~a~~l~~~a~~~g~ 126 (200)
.+.+++++|.+.|+
T Consensus 219 ~Lr~lN~acvkegk 232 (637)
T TIGR03693 219 DLHALHAFCKEEGK 232 (637)
T ss_pred HHHHHHHHHHHcCC
Confidence 68899999998886
No 59
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=58.82 E-value=1.7e+02 Score=28.07 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCCeeEEEEEeCCCC----CCcCCCCh----hhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCch
Q 028985 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDP----SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP 182 (200)
Q Consensus 111 ~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e----m~R~G~~~----e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~ 182 (200)
.+....+-+.|++.|+ ++++ =+|.|.= |+|.|-.| +.+.++++.+. ++..-++ ++|+=+++.....
T Consensus 144 ~e~~~~vV~~ake~~~-~IRI--GvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e-~~~f~di--viS~KsSnv~~mi 217 (606)
T PRK00694 144 EEKFSPLVEKCKRLGK-AMRI--GVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCE-KLDYRDV--VFSMKSSNPKVMV 217 (606)
T ss_pred HHHHHHHHHHHHHCCC-CEEE--ecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCCcE--EEEEEcCCHHHHH
Confidence 3456677788888886 6555 7898832 24778666 34444555554 4444344 5566654443345
Q ss_pred HHHHHHHHHHHhc
Q 028985 183 ENFRVMDFSFRRA 195 (200)
Q Consensus 183 ~~F~~l~~~~~~~ 195 (200)
+.++.+.+..++.
T Consensus 218 ~AyrlLa~~~d~e 230 (606)
T PRK00694 218 AAYRQLAKDLDAR 230 (606)
T ss_pred HHHHHHHHHhhcc
Confidence 7788887777644
No 60
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=55.29 E-value=2e+02 Score=27.74 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCC--eeeeccHHHHHHHhcC---C-----CCCc--cccccCCCChHHHHhHhccCCCccEEE-eeCc---
Q 028985 47 SLIRQVYDAGHR--SFGENYVQEIVDKAPQ---L-----PEDI--KWHFVGHLQSNKAKTLLGGVPNLDMVE-GVGN--- 110 (200)
Q Consensus 47 ~~i~~~~~~G~~--~fgva~v~Ea~~lr~~---~-----~~~i--~~~~iG~~~~~~~~~~~~~~~~~~~~~-sv~s--- 110 (200)
.++..+.++|++ .++|...+||..+..- + +.|+ ..||-..+...-++. ++ ...+=| .+.+
T Consensus 45 ~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-v~---kiRINPGN~~~~~k 120 (611)
T PRK02048 45 AQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-AE---KVRINPGNYVDPGR 120 (611)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-hC---CEEECCCcCCCccc
Confidence 345677889988 5899999998865432 2 2232 225432222111121 32 122211 1111
Q ss_pred -------------------HHHHHHHHHHHHhcCCCCeeEEEEEeCCCC----CCcCCCChh----hHHHHHHHHHhcCC
Q 028985 111 -------------------EKIANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDPS----SCLGIVEHVRLRCP 163 (200)
Q Consensus 111 -------------------~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e----m~R~G~~~e----~~~~~~~~i~~~~~ 163 (200)
.+....+-+.|++.|. ++++ =+|.|.= |+|.|-.|+ .+.++++.+. ++.
T Consensus 121 ~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~-~iRI--GvN~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e-~~~ 196 (611)
T PRK02048 121 TFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHT-AIRI--GVNHGSLSDRIMSRYGDTPEGMVESCMEFLRICV-EEH 196 (611)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHCCC-CEEE--ecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHH-HCC
Confidence 1445566678888886 6555 7898832 247887773 3444555554 444
Q ss_pred CeEEeEEEeecCCCCCCchHHHHHHHHHHHhc
Q 028985 164 NLEFSGLMTIGMPDYTSTPENFRVMDFSFRRA 195 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~ 195 (200)
.-++ ++|+=++........++.+.+.+.+.
T Consensus 197 f~di--viS~KsS~~~~~V~AyRlLa~~l~~~ 226 (611)
T PRK02048 197 FTDV--VISIKASNTVVMVRTVRLLVAVMEAE 226 (611)
T ss_pred CCcE--EEEEEeCCcHHHHHHHHHHHHHHHhc
Confidence 3333 55666555434457788888887754
No 61
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.89 E-value=79 Score=25.26 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=37.2
Q ss_pred EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCC
Q 028985 105 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 105 ~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
..-+...+++..+-+.+.+.+. +|.+ .| -.|+.+.++.+.+.+.+|++++.|. |+.-+
T Consensus 28 ~~Rv~G~dl~~~l~~~~~~~~~---~vfl---lG-------~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~ 85 (177)
T TIGR00696 28 QSRVAGPDLMEELCQRAGKEKL---PIFL---YG-------GKPDVLQQLKVKLIKEYPKLKIVGA--FGPLE 85 (177)
T ss_pred CCccChHHHHHHHHHHHHHcCC---eEEE---EC-------CCHHHHHHHHHHHHHHCCCCEEEEE--CCCCC
Confidence 3345567778777777765553 3432 14 4566777777777657899998885 54443
No 62
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=53.43 E-value=39 Score=30.28 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCCcCCCChhhHHHHHHHHHhc----CCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcccc
Q 028985 130 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR----CPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAHVL 198 (200)
Q Consensus 130 ~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~----~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~~~ 198 (200)
.||| ||.| ++ .|+ +...+++.+. . -|.|+|.||-+=.+...+...+.=+.|.+.++..||.
T Consensus 111 ~vHI-ID~~--i~-~G~---QW~~LiqaLa-~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~ 175 (374)
T PF03514_consen 111 RVHI-IDFG--IG-FGV---QWPSLIQALA-SRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP 175 (374)
T ss_pred ceEE-Eecc--CC-cch---HHHHHHHHHh-cCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc
Confidence 4776 8998 65 676 5677777776 4 3799999998722112122223345555556555553
No 63
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=52.48 E-value=76 Score=27.17 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=45.4
Q ss_pred EEEEeccCCHHHHHHHHHhcCCeeeecc--H---HHHHHHhcCCCCCccccccCCCChHHHHhHhccCCCccEEEeeCcH
Q 028985 37 VVAVSKTKPVSLIRQVYDAGHRSFGENY--V---QEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNE 111 (200)
Q Consensus 37 l~aVvKahg~~~i~~~~~~G~~~fgva~--v---~Ea~~lr~~~~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~~sv~s~ 111 (200)
.+.|. .|..+++..+.++|+++++... + .++.+..+....++.+..+|.+..+.+..+++ ...+.+ ++.++
T Consensus 185 ~IgVe-v~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~--~Gvd~I-~vsai 260 (272)
T cd01573 185 KIVVE-VDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAA--AGADIL-VTSAP 260 (272)
T ss_pred eEEEE-cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHH--cCCcEE-EEChh
Confidence 44554 6888888777789999987632 2 23443222221124446779999998988874 346777 66664
Q ss_pred H
Q 028985 112 K 112 (200)
Q Consensus 112 ~ 112 (200)
-
T Consensus 261 ~ 261 (272)
T cd01573 261 Y 261 (272)
T ss_pred h
Confidence 3
No 64
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=51.81 E-value=1.4e+02 Score=24.91 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEEecc--CCHHHHHHHHHhcCCeeeec------cHHHHHHHhcCCCCCccccccCCCC
Q 028985 20 RVRQAAERSGRTQEQIRVVAVSKT--KPVSLIRQVYDAGHRSFGEN------YVQEIVDKAPQLPEDIKWHFVGHLQ 88 (200)
Q Consensus 20 ni~~~~~~~~r~~~~v~l~aVvKa--hg~~~i~~~~~~G~~~fgva------~v~Ea~~lr~~~~~~i~~~~iG~~~ 88 (200)
-++.+++.+ ++..+++=.|+ -|..+++.+.++|++++.|. ++..+++-.+.....+..-++|.-.
T Consensus 46 aV~~lr~~~----pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 46 AVRALRELF----PDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHHHC----CCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 345555555 45689999999 55577788999999997653 4555555444433333224455443
No 65
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=49.08 E-value=85 Score=25.32 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhcCCe------------------------eeeccHHHHHHHhcCCCCCcccccc-CCCChHHHHhHhcc
Q 028985 44 KPVSLIRQVYDAGHRS------------------------FGENYVQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (200)
Q Consensus 44 hg~~~i~~~~~~G~~~------------------------fgva~v~Ea~~lr~~~~~~i~~~~i-G~~~~~~~~~~~~~ 98 (200)
-|...++.+..+|+.. +|.++++.+.+..+.+...+.+..+ ..+....+..++
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~-- 109 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI-- 109 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH--
Confidence 5556567777888743 3445555555544443322322222 334445556666
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 028985 99 VPNLDMV-EGVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 99 ~~~~~~~-~sv~s~~~a~~l~~~a~~~g~ 126 (200)
+.++++ .+.|+.+.-..+++.|.+.++
T Consensus 110 -~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 110 -NNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred -hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 346655 477899988899999998875
No 66
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=48.46 E-value=1.6e+02 Score=26.48 Aligned_cols=94 Identities=18% Similarity=0.292 Sum_probs=54.5
Q ss_pred EEEeccCCH----HHHHHHHHhcCC--eeeeccHHHHHHHhcC---CCCCc--cccccCCCChHHHHhHhcc-CCCccEE
Q 028985 38 VAVSKTKPV----SLIRQVYDAGHR--SFGENYVQEIVDKAPQ---LPEDI--KWHFVGHLQSNKAKTLLGG-VPNLDMV 105 (200)
Q Consensus 38 ~aVvKahg~----~~i~~~~~~G~~--~fgva~v~Ea~~lr~~---~~~~i--~~~~iG~~~~~~~~~~~~~-~~~~~~~ 105 (200)
|.-++++.. .+|+.+.++|++ .++|...++|..+.+- .+-|+ .+|| +....-..++. ++...+-
T Consensus 33 Mt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHF----d~~lAl~a~~~G~~~iRIN 108 (360)
T PRK00366 33 MTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHF----DYRLALAAAEAGADALRIN 108 (360)
T ss_pred cCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCC----CHHHHHHHHHhCCCEEEEC
Confidence 434445553 345677889988 5888888888865442 33332 2243 33333333310 0111221
Q ss_pred E-eeCc-HHHHHHHHHHHHhcCCCCeeEEEEEeCC
Q 028985 106 E-GVGN-EKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (200)
Q Consensus 106 ~-sv~s-~~~a~~l~~~a~~~g~~~~~v~lkvdtG 138 (200)
| .+.+ .+.++.+-+.|++.+. ++++ =||.|
T Consensus 109 PGNig~~~~~v~~vv~~ak~~~i-pIRI--GvN~G 140 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAKDYGI-PIRI--GVNAG 140 (360)
T ss_pred CCCCCchHHHHHHHHHHHHHCCC-CEEE--ecCCc
Confidence 2 3456 7788999999998876 6554 79998
No 67
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.69 E-value=1.7e+02 Score=25.45 Aligned_cols=85 Identities=11% Similarity=0.170 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeee-----ccHHHHHHHhcCCCCCccccccCCCChH
Q 028985 16 SVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGE-----NYVQEIVDKAPQLPEDIKWHFVGHLQSN 90 (200)
Q Consensus 16 ~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgv-----a~v~Ea~~lr~~~~~~i~~~~iG~~~~~ 90 (200)
.+.+-+..+++.++. . ...-+-.|..+++.++.++|++++.. ..+.++.++.+.....+.+...|.+..+
T Consensus 181 ~i~~av~~~r~~~~~---~--~~I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ 255 (288)
T PRK07428 181 GIGEAITRIRQRIPY---P--LTIEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLE 255 (288)
T ss_pred CHHHHHHHHHHhCCC---C--CEEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHH
Confidence 355666666665532 2 22334568888888888999988544 4555555543321223445677999999
Q ss_pred HHHhHhccCCCccEEEe
Q 028985 91 KAKTLLGGVPNLDMVEG 107 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~s 107 (200)
.+.+++. -..+.+.+
T Consensus 256 ni~~ya~--tGvD~Isv 270 (288)
T PRK07428 256 TIRAVAE--TGVDYISS 270 (288)
T ss_pred HHHHHHH--cCCCEEEE
Confidence 8988874 23566443
No 68
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=41.76 E-value=91 Score=27.91 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=58.0
Q ss_pred EEEEEeccCCH----HHHHHHHHhcCC--eeeeccHHHHHHHhc---CCCCCc--cccccCCCChHHHHhHhcc-CCCcc
Q 028985 36 RVVAVSKTKPV----SLIRQVYDAGHR--SFGENYVQEIVDKAP---QLPEDI--KWHFVGHLQSNKAKTLLGG-VPNLD 103 (200)
Q Consensus 36 ~l~aVvKahg~----~~i~~~~~~G~~--~fgva~v~Ea~~lr~---~~~~~i--~~~~iG~~~~~~~~~~~~~-~~~~~ 103 (200)
+=|-=+|++.. ..|++|.++|++ .++|.+.+.|..+.+ .++.|+ .+||. ..-.-..++. +..+.
T Consensus 25 QSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~----~rla~~~~~~g~~k~R 100 (361)
T COG0821 25 QSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFD----YRLALEAAECGVDKVR 100 (361)
T ss_pred EeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeecc----HHHHHHhhhcCcceEE
Confidence 34555666774 336778899988 589999999886543 233342 23542 2222222210 01122
Q ss_pred EEE-eeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC
Q 028985 104 MVE-GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (200)
Q Consensus 104 ~~~-sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG 138 (200)
+-| .+.+.+....+-+.|++.|+ ++++ =||.|
T Consensus 101 INPGNig~~~~v~~vVe~Ak~~g~-piRI--GVN~G 133 (361)
T COG0821 101 INPGNIGFKDRVREVVEAAKDKGI-PIRI--GVNAG 133 (361)
T ss_pred ECCcccCcHHHHHHHHHHHHHcCC-CEEE--ecccC
Confidence 222 46777788899999999887 6555 79998
No 69
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=39.78 E-value=1.2e+02 Score=25.34 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhcCCe------------------------eeeccHHHHHHHhcCCCCCccccc-cCCCChHHHHhHhcc
Q 028985 44 KPVSLIRQVYDAGHRS------------------------FGENYVQEIVDKAPQLPEDIKWHF-VGHLQSNKAKTLLGG 98 (200)
Q Consensus 44 hg~~~i~~~~~~G~~~------------------------fgva~v~Ea~~lr~~~~~~i~~~~-iG~~~~~~~~~~~~~ 98 (200)
-|+..+..+..+|+.. +|-.+++.+.+....+...+.... -..+..+.+..++
T Consensus 35 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~-- 112 (240)
T TIGR02355 35 LGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALI-- 112 (240)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 5556567777788744 344455555444333322221122 2345555566666
Q ss_pred CCCccEEE-eeCcHHHHHHHHHHHHhcCC
Q 028985 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 99 ~~~~~~~~-sv~s~~~a~~l~~~a~~~g~ 126 (200)
+.++++. +.|+++.-..|++.|.+.++
T Consensus 113 -~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 113 -AEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred -hcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 3467665 77999988889999998775
No 70
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=39.15 E-value=1.1e+02 Score=25.48 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhcCCee------------------------eeccHHHHHHHhcCCCCCcccc-ccCCCChHHHHhHhcc
Q 028985 44 KPVSLIRQVYDAGHRSF------------------------GENYVQEIVDKAPQLPEDIKWH-FVGHLQSNKAKTLLGG 98 (200)
Q Consensus 44 hg~~~i~~~~~~G~~~f------------------------gva~v~Ea~~lr~~~~~~i~~~-~iG~~~~~~~~~~~~~ 98 (200)
-|+..++.+..+|+..| |-.+++.+.+....+...+... +-..+..+.+..++
T Consensus 43 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~-- 120 (245)
T PRK05690 43 LGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALI-- 120 (245)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--
Confidence 55666677888887533 4445555554333332222111 22445555666666
Q ss_pred CCCccEEE-eeCcHHHHHHHHHHHHhcCC
Q 028985 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 99 ~~~~~~~~-sv~s~~~a~~l~~~a~~~g~ 126 (200)
+.++++. +.|+.+.-..+++.|.+.++
T Consensus 121 -~~~DiVi~~~D~~~~r~~ln~~~~~~~i 148 (245)
T PRK05690 121 -AGHDLVLDCTDNVATRNQLNRACFAAKK 148 (245)
T ss_pred -hcCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 3466654 78899888889999998775
No 71
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=39.09 E-value=2.1e+02 Score=25.87 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=43.4
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhccc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAHV 197 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~~ 197 (200)
..+++-+++|. .|+| |...+++.+.++.+.+..+++.+.+-+-.+-.. +..+.|.+..+++++.++
T Consensus 246 ~~l~iglES~s~~vLk~m~k-~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~Pg--ET~e~~~~t~~fl~~~~~ 316 (430)
T TIGR01125 246 PYLDIPLQHASDRILKLMRR-PGSGEQQLDFIERLREKCPDAVLRTTFIVGFPG--ETEEDFQELLDFVEEGQF 316 (430)
T ss_pred CceEeCCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCC--CCHHHHHHHHHHHHhcCC
Confidence 35788888884 4777 677888999998887234677654433222122 346778888888776543
No 72
>PHA01627 DNA binding protein
Probab=38.97 E-value=1.1e+02 Score=22.67 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=40.2
Q ss_pred cccCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC
Q 028985 82 HFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (200)
Q Consensus 82 ~~iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG 138 (200)
-.+..+..++++.++. .-.++..|.+..+|+.+++.+.-. ...=++-++++.|
T Consensus 21 v~~~~i~~~Eak~~v~---~~~~vSaIGH~sTA~lls~llg~~-ip~NRi~i~~~~G 73 (107)
T PHA01627 21 VVIDKIDIEEAKELLE---NEEFVSAIGHDATANLLSNLCGVN-LPKNRIEIKLDKG 73 (107)
T ss_pred EEEecCCHHHHHHHhc---ccCeEEeeccHHHHHHHHHHhCcc-ccccceEEEecCC
Confidence 3457888899999993 468999999999999999998632 2122366677777
No 73
>PRK07329 hypothetical protein; Provisional
Probab=38.23 E-value=2.2e+02 Score=23.62 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCC--CchHHHHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRVMD 189 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~--~~~~~F~~l~ 189 (200)
+.++.+-+.+++.| +.|+|||++ +.|-+.. +....+++... ..... ..|..+.+-. +....|..+.
T Consensus 165 ~~~~~i~~~~~~~~-----~~lEiNt~~-~~~~~~~-~~~~~~l~~~~-~~g~~----~i~~gSDAH~~~~vg~~~~~a~ 232 (246)
T PRK07329 165 PQLTRIFAKMIDND-----LAFELNTKS-MYLYGNE-GLYRYAIELYK-QLGGK----LFSIGSDAHKLEHYRYNFDDAQ 232 (246)
T ss_pred HHHHHHHHHHHHcC-----CeEEEECcc-cccCCCC-cchHHHHHHHH-HcCCe----EEEecCCCCCHHHHHHHHHHHH
Confidence 34455556666555 578999974 4343322 22244455554 43221 2455544332 2336799999
Q ss_pred HHHHhccc
Q 028985 190 FSFRRAHV 197 (200)
Q Consensus 190 ~~~~~~~~ 197 (200)
+++++.|.
T Consensus 233 ~~l~~~g~ 240 (246)
T PRK07329 233 KLLKEHGI 240 (246)
T ss_pred HHHHHcCC
Confidence 98888764
No 74
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=38.07 E-value=4.1e+02 Score=26.28 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCCeeEEEEEeCCCC----CCcCCCCh----hhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHH
Q 028985 116 HLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDP----SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRV 187 (200)
Q Consensus 116 ~l~~~a~~~g~~~~~v~lkvdtG~e----m~R~G~~~----e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~ 187 (200)
.+-+.|++.|+ ++++ =+|.|.= |+|.|-.| +.+.++++.+. .+..-++ ++|+=+++.......|+.
T Consensus 214 ~~v~~ak~~~~-~iRI--GvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e-~~~f~di--viS~KsSn~~~~V~AyR~ 287 (733)
T PLN02925 214 PLVEKCKKYGR-AMRI--GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR-KLDYHNF--VFSMKASNPVVMVQAYRL 287 (733)
T ss_pred HHHHHHHHCCC-CEEE--ecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHH-HCCCCcE--EEEEEcCChHHHHHHHHH
Confidence 35667888886 6555 7888832 24778666 34444555554 4444333 556665444334577888
Q ss_pred HHHHHHhcc
Q 028985 188 MDFSFRRAH 196 (200)
Q Consensus 188 l~~~~~~~~ 196 (200)
+...+.+.+
T Consensus 288 La~~L~~~g 296 (733)
T PLN02925 288 LVAEMYVLG 296 (733)
T ss_pred HHHHHHhcC
Confidence 888766543
No 75
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.86 E-value=2e+02 Score=22.55 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=38.4
Q ss_pred cEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEE
Q 028985 103 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170 (200)
Q Consensus 103 ~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~Gl 170 (200)
.....++..+.+..+-+.+.+.+. ++=+ .| -.++.+..+.+.+.+.+|++++.|.
T Consensus 24 ~~~~r~~g~dl~~~ll~~~~~~~~-~v~l-----lG-------~~~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 24 PLPERVTGSDLMPALLELAAQKGL-RVFL-----LG-------AKPEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CCCcccCcHHHHHHHHHHHHHcCC-eEEE-----EC-------CCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 355677888888888887776554 4333 13 4567778877777657899999884
No 76
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=37.12 E-value=3.2e+02 Score=24.70 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=45.1
Q ss_pred eCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCC
Q 028985 108 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 108 v~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~ 176 (200)
||=.-+++++++.++..|+ -+.+| +|- ++--+.-| -+.++++.++ ..|++.+..+-|++..
T Consensus 141 Vd~eyLl~w~~kVa~~Kgk-glEaH--lDG---qGEP~lYP-~l~~lVqalk-~~~~v~vVSmQTng~~ 201 (414)
T COG2100 141 VDPEYLLEWFEKVARFKGK-GLEAH--LDG---QGEPLLYP-HLVDLVQALK-EHKGVEVVSMQTNGVL 201 (414)
T ss_pred ecHHHHHHHHHHHHhhhCC-CeEEE--ecC---CCCCccch-hHHHHHHHHh-cCCCceEEEEeeCcee
Confidence 3434556888888887786 77776 553 55555554 5778888998 9999999999999854
No 77
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.97 E-value=1.8e+02 Score=26.48 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=43.5
Q ss_pred eeEEEEEeCCCC-----CCcCCCChhhHHHHHHHHHhcCCCeEEeE-EEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSGE-----ESKSGIDPSSCLGIVEHVRLRCPNLEFSG-LMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~e-----m~R~G~~~e~~~~~~~~i~~~~~~l~~~G-lmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+|+-+.+|.+ |+| |...++..+.++.+.+..|++.+.+ +|.=|| . +..+.|++..++.++.+
T Consensus 256 ~~l~igiqSgsd~vLk~m~R-~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~P-g--ET~ed~~~tl~~l~~l~ 325 (437)
T PRK14331 256 EHLHLPFQAGSDRILKLMDR-GYTKEEYLEKIELLKEYIPDITFSTDIIVGFP-T--ETEEDFEETLDVLKKVE 325 (437)
T ss_pred CceecccccCChHHHHHcCC-CCCHHHHHHHHHHHHHhCCCCEEecCEEEECC-C--CCHHHHHHHHHHHHhcC
Confidence 458888888853 666 6778899999998873347887655 333332 2 34667888888777654
No 78
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.38 E-value=2.3e+02 Score=25.63 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=43.7
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+||-+.+|. -|+| |...+++.++++.+.+..|++.+.+=+-.+-.. +..+.|++..++.++.+
T Consensus 235 ~~l~lglQSgsd~vLk~M~R-~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPG--ET~edf~~tl~fi~~~~ 304 (418)
T PRK14336 235 RSLSLPVQAGDDTILAAMRR-GYTNQQYRELVERLKTAMPDISLQTDLIVGFPS--ETEEQFNQSYKLMADIG 304 (418)
T ss_pred CceecCCCcCCHHHHHHhCC-CCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcC
Confidence 45788888863 3667 667889999999887345888775433333222 34677888888777653
No 79
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.44 E-value=81 Score=25.73 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCC-CCCCchHHHHHHH
Q 028985 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTSTPENFRVMD 189 (200)
Q Consensus 111 ~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~-~~~~~~~~F~~l~ 189 (200)
.+.+...-+.+++.|. . |.+-... .+ ...++++.++++.+. .. +.....|.=..+. .++.....|+.+.
T Consensus 107 ~~~~~~~v~~ak~~g~-~--v~~~~~~---~~--~~~~~~~~~~~~~~~-~~-g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 107 LERIEEAVKYAKELGY-E--VAFGCED---AS--RTDPEELLELAEALA-EA-GADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHHHHHHHHHTTS-E--EEEEETT---TG--GSSHHHHHHHHHHHH-HH-T-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-c--eEeCccc---cc--cccHHHHHHHHHHHH-Hc-CCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 5555555566666654 3 3222211 12 245677777777775 43 3343344422222 2222334455555
Q ss_pred HHHH
Q 028985 190 FSFR 193 (200)
Q Consensus 190 ~~~~ 193 (200)
+.+.
T Consensus 177 ~~~~ 180 (237)
T PF00682_consen 177 EALP 180 (237)
T ss_dssp HHST
T ss_pred Hhcc
Confidence 4444
No 80
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=2.1e+02 Score=21.88 Aligned_cols=60 Identities=8% Similarity=0.202 Sum_probs=45.8
Q ss_pred ccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCe
Q 028985 102 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 165 (200)
Q Consensus 102 ~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l 165 (200)
+.++..=+|.+.++-+.+..++..+ +|.|----|++.+++|-+++.+.+.++... .-.++
T Consensus 3 vgiVIVSHS~~lAeGv~~li~em~~---dv~i~~~gGtddg~iGTs~~~I~~aI~~~~-~ad~~ 62 (129)
T COG3412 3 VGIVIVSHSKELAEGVAELIREMAG---DVPITYAGGTDDGQIGTSFEKIMEAIEKAN-EADHV 62 (129)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhC---CCceEEecCCCCCCcCcCHHHHHHHHHhcc-ccCce
Confidence 4566666899999999999888753 677788888889999999888887776543 33443
No 81
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=34.19 E-value=2.1e+02 Score=26.05 Aligned_cols=65 Identities=17% Similarity=0.338 Sum_probs=44.2
Q ss_pred eEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhccc
Q 028985 130 KVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAHV 197 (200)
Q Consensus 130 ~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~~ 197 (200)
.+||-+++|. .|+| +...++..+.++.+.+..|++.+.+-+-.+-.. +..+.|++..++.++.++
T Consensus 258 ~l~IglESgs~~vLk~m~r-~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPg--ET~edf~~tl~fi~e~~~ 327 (440)
T PRK14862 258 YLDIPFQHASPRVLKRMKR-PASVEKTLERIKKWREICPDLTIRSTFIVGFPG--ETEEDFQMLLDFLKEAQL 327 (440)
T ss_pred ccccccccCCHHHHHhcCC-CCCHHHHHHHHHHHHHHCCCceecccEEEECCC--CCHHHHHHHHHHHHHcCC
Confidence 6788889884 3777 456788888888887335888776533222122 356779999998887653
No 82
>TIGR03619 F420_Rv2161c probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria.
Probab=33.97 E-value=1e+02 Score=25.62 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEe-ccCCH-HH----HHHHHHhcCCeeee
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVS-KTKPV-SL----IRQVYDAGHRSFGE 62 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVv-Kahg~-~~----i~~~~~~G~~~fgv 62 (200)
+......++..++..||+++.+.+.... -..|. .+ ++...++|+++|-.
T Consensus 190 ~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~G~~~~~~ 244 (246)
T TIGR03619 190 LAAAVARLRDLAAAAGRDPDAVEVVLVRTDPDGDADADAEDLAAYADLGVTRLVV 244 (246)
T ss_pred HHHHHHHHHHHHHHcCCCccceeEEeeccccCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 3445556666677889987777665552 12553 22 34456789998743
No 83
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=33.79 E-value=1.5e+02 Score=25.24 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCC-CCchHHHHHHHHHHHhcccc
Q 028985 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-TSTPENFRVMDFSFRRAHVL 198 (200)
Q Consensus 131 v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~-~~~~~~F~~l~~~~~~~~~~ 198 (200)
+-+++-+| |+--|++|+ +...++.+..-+.+=.+.++--.+-..- ++..+.|+.-.+++++..+.
T Consensus 64 l~~~vavG--vHPr~iP~e-~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvP 129 (254)
T COG1099 64 LKLKVAVG--VHPRAIPPE-LEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVP 129 (254)
T ss_pred ceeeEEec--cCCCCCCch-HHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCc
Confidence 33456778 998899885 7777777751223334555555543221 13578899999999988553
No 84
>PLN02489 homocysteine S-methyltransferase
Probab=33.64 E-value=2.7e+02 Score=24.48 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=41.5
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCC-CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEe
Q 028985 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 172 (200)
Q Consensus 104 ~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~-em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmT 172 (200)
+..|+.+++.++.+-+.+++.+. .++|++.+..-. +..+.|.+.+++ ++.+. ....+...|+-+
T Consensus 185 ~~ET~~~l~E~~a~~~~~~~~~~-~~p~~iS~t~~~~~~l~~G~~~~~~---~~~~~-~~~~~~~iGiNC 249 (335)
T PLN02489 185 AFETIPNKLEAQAYVELLEEENI-KIPAWISFNSKDGVNVVSGDSLLEC---ASIAD-SCKKVVAVGINC 249 (335)
T ss_pred EEeccCChHHHHHHHHHHHHcCC-CCeEEEEEEeCCCCccCCCCcHHHH---HHHHH-hcCCceEEEecC
Confidence 45789999999999888887764 678888887621 133567655444 44443 334455556554
No 85
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=33.20 E-value=3.1e+02 Score=23.41 Aligned_cols=49 Identities=20% Similarity=0.111 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcccc
Q 028985 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAHVL 198 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~~~ 198 (200)
++.+.+.++.+. +++.-.+.|+........ ...+.|..+.+.+++.|+.
T Consensus 140 ~~~~~~~~~~~~-~~~~~~vvg~~l~~~~~~-~~~~~~~~~~~~A~~~g~~ 188 (325)
T cd01320 140 PESAQETLELAL-KYRDKGVVGFDLAGDEVG-FPPEKFVRAFQRAREAGLR 188 (325)
T ss_pred HHHHHHHHHHHH-hccCCCEEEeecCCCCCC-CCHHHHHHHHHHHHHCCCc
Confidence 455555555554 443323455544322111 1345577777777666544
No 86
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.92 E-value=1.5e+02 Score=19.71 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=43.1
Q ss_pred cEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCC-cCC----CChhhHHHHHHHHHhcCCCeEEeEEEe
Q 028985 103 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEES-KSG----IDPSSCLGIVEHVRLRCPNLEFSGLMT 172 (200)
Q Consensus 103 ~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~-R~G----~~~e~~~~~~~~i~~~~~~l~~~GlmT 172 (200)
.++.+.+|...+-..++.+++.|. +.++ +-|-.+.+ -+| +.+++...+.+.+. -.++.+.|++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi-~~~l---iP~P~~i~~~CG~al~~~~~d~~~i~~~l~--~~~i~~~~iy~ 71 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI-PVRL---IPTPREISAGCGLALRFEPEDLEKIKEILE--ENGIEYEGIYE 71 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC-cEEE---eCCChhccCCCCEEEEEChhhHHHHHHHHH--HCCCCeeEEEE
Confidence 356778899999999999998875 5554 33332221 255 34566666666664 47899999985
No 87
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=31.94 E-value=2.6e+02 Score=22.84 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhcCCee------------------------eeccHHHHHHHhcCCCCCcccccc-CCCChHHHHhHhcc
Q 028985 44 KPVSLIRQVYDAGHRSF------------------------GENYVQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (200)
Q Consensus 44 hg~~~i~~~~~~G~~~f------------------------gva~v~Ea~~lr~~~~~~i~~~~i-G~~~~~~~~~~~~~ 98 (200)
-|+..++.+..+|+..| |..+.+-+.+..+.+...+.+-.+ ..+..+.+..+.
T Consensus 32 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~-- 109 (228)
T cd00757 32 LGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELI-- 109 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHH--
Confidence 55666677888888544 444455444433333222221211 233445556666
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 028985 99 VPNLDMV-EGVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 99 ~~~~~~~-~sv~s~~~a~~l~~~a~~~g~ 126 (200)
+.++++ .+.|+++.-..+++.|.+.+.
T Consensus 110 -~~~DvVi~~~d~~~~r~~l~~~~~~~~i 137 (228)
T cd00757 110 -AGYDLVLDCTDNFATRYLINDACVKLGK 137 (228)
T ss_pred -hCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 235655 477899888889999998775
No 88
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=31.69 E-value=3.3e+02 Score=23.28 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=61.4
Q ss_pred EEEeccCCHHHHHHHHHhcCCeeee---ccHHHHHHHhcCCCCC-c----------cccccCCCChHHHHhHhccCCCcc
Q 028985 38 VAVSKTKPVSLIRQVYDAGHRSFGE---NYVQEIVDKAPQLPED-I----------KWHFVGHLQSNKAKTLLGGVPNLD 103 (200)
Q Consensus 38 ~aVvKahg~~~i~~~~~~G~~~fgv---a~v~Ea~~lr~~~~~~-i----------~~~~iG~~~~~~~~~~~~~~~~~~ 103 (200)
+.=+-.+....++.++++|+..+=+ ++.+||..+.++..-| . +..-.|. .+++-.-.. +..-
T Consensus 72 lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~--~~~y~~~an--~~~~ 147 (267)
T PRK10128 72 VIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGR--IENYMAQAN--DSLC 147 (267)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCC--hHHHHHHhc--cccE
Confidence 3333456667788899999999765 6666777666652211 1 0000121 112222221 2356
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCCeeE-EE-EEeCCCCCCcCC-CChhhHHHHHHHH
Q 028985 104 MVEGVGNEKIANHLDKAVSNLGRKPLKV-LV-QVNTSGEESKSG-IDPSSCLGIVEHV 158 (200)
Q Consensus 104 ~~~sv~s~~~a~~l~~~a~~~g~~~~~v-~l-kvdtG~em~R~G-~~~e~~~~~~~~i 158 (200)
++.-|.+.+-++.+++.+.-.|. +. ++ --|....|+-.| +.-.++.+.++.+
T Consensus 148 vi~qiEt~~a~~n~~~I~~~~gv---d~i~~G~~Dls~slg~~~~~~~pev~~ai~~v 202 (267)
T PRK10128 148 LLVQVESKTALDNLDEILDVEGI---DGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202 (267)
T ss_pred EEEEECCHHHHHhHHHHhCCCCC---CEEEECHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 77888999999999998865432 32 11 113333344333 2224555555554
No 89
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.48 E-value=3.4e+02 Score=23.35 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeecc--HHHHHHHhcCCCCCccccccCCCChHHH
Q 028985 15 RSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENY--VQEIVDKAPQLPEDIKWHFVGHLQSNKA 92 (200)
Q Consensus 15 ~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~--v~Ea~~lr~~~~~~i~~~~iG~~~~~~~ 92 (200)
..+.+.+..+++..+. . .++.|+ .|..+++..+.+.|+++++.-. +++..+.++.+..++..-.+|.+..+.+
T Consensus 172 g~~~~~v~~aR~~~~~---~-~~Igvs-v~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni 246 (277)
T PRK08072 172 GSITKAVTSVREKLGH---M-VKIEVE-TETEEQVREAVAAGADIIMFDNRTPDEIREFVKLVPSAIVTEASGGITLENL 246 (277)
T ss_pred CCHHHHHHHHHHhCCC---C-CEEEEE-eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCceEEEECCCCHHHH
Confidence 3466677777766642 2 345553 4888888778889999987742 3333333433433453357899999999
Q ss_pred HhHhc
Q 028985 93 KTLLG 97 (200)
Q Consensus 93 ~~~~~ 97 (200)
..+++
T Consensus 247 ~~~a~ 251 (277)
T PRK08072 247 PAYGG 251 (277)
T ss_pred HHHHH
Confidence 88874
No 90
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=31.40 E-value=2e+02 Score=22.45 Aligned_cols=40 Identities=5% Similarity=0.148 Sum_probs=32.0
Q ss_pred CcEEEEEecc------CCHHHH-HHHHHhcCCeeeeccHHHHHHHhc
Q 028985 34 QIRVVAVSKT------KPVSLI-RQVYDAGHRSFGENYVQEIVDKAP 73 (200)
Q Consensus 34 ~v~l~aVvKa------hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~ 73 (200)
+++.+.++|+ .|..++ +.++++|..-+=..-+++|+++.+
T Consensus 27 g~k~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~dL~DAlevL~ 73 (147)
T COG4080 27 GAKRLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPDLDDALEVLR 73 (147)
T ss_pred CccEEEEEecccHhhhhccHHHHHHHHHhCCcEEEehhHHHHHHhcC
Confidence 5889999997 445556 667899988888899999998644
No 91
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=30.48 E-value=3.2e+02 Score=22.69 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC-eEEeEEEeecCCCCCCchHHHHHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGMPDYTSTPENFRVMDF 190 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~-l~~~GlmTh~a~~~~~~~~~F~~l~~ 190 (200)
+.+...-+.|++... ..++.+- |-+.+.. +-..+...++++.+. .... +.-.|+..|+..+. .....+.+..+
T Consensus 103 ~~i~~af~~ar~~~P-~a~l~~N-dy~~~~~--~~k~~~~~~~v~~l~-~~g~~iDgiGlQ~H~~~~~-~~~~~~~~~l~ 176 (254)
T smart00633 103 DYIEKAFRYAREADP-DAKLFYN-DYNTEEP--NAKRQAIYELVKKLK-AKGVPIDGIGLQSHLSLGS-PNIAEIRAALD 176 (254)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEe-ccCCcCc--cHHHHHHHHHHHHHH-HCCCccceeeeeeeecCCC-CCHHHHHHHHH
Confidence 445555566777665 6666654 2221111 112245677788776 5432 77888888985322 23455677777
Q ss_pred HHHhccccC
Q 028985 191 SFRRAHVLL 199 (200)
Q Consensus 191 ~~~~~~~~~ 199 (200)
.+...|+.+
T Consensus 177 ~~~~~g~pi 185 (254)
T smart00633 177 RFASLGLEI 185 (254)
T ss_pred HHHHcCCce
Confidence 666666544
No 92
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.03 E-value=3.2e+02 Score=24.83 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=40.8
Q ss_pred eeEEEEEeCCCC-----CCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhc
Q 028985 129 LKVLVQVNTSGE-----ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRA 195 (200)
Q Consensus 129 ~~v~lkvdtG~e-----m~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~ 195 (200)
..+++-+.+|.+ |+| |..++++.+.++.+.+..|++.+..=+-.+-.. +..+.|++..++.++.
T Consensus 258 ~~l~iglQSgsd~vLk~M~R-~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~Pg--ET~ed~~~tl~~i~~l 326 (439)
T PRK14328 258 EHIHLPVQSGSNRILKKMNR-HYTREYYLELVEKIKSNIPDVAITTDIIVGFPG--ETEEDFEETLDLVKEV 326 (439)
T ss_pred ceeeeCCCcCCHHHHHhCCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhc
Confidence 357888888744 666 467788999988887345787664322222122 3456677777776654
No 93
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=30.00 E-value=67 Score=29.34 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.7
Q ss_pred eCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCC
Q 028985 108 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG 145 (200)
Q Consensus 108 v~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G 145 (200)
.-+.+.++.+.+.|.+.| .+=|+=+|-|| |+|+|
T Consensus 201 ~~~~~fl~~lr~lCd~~g--~LLI~DEVQtG--~GRTG 234 (404)
T COG4992 201 PAPPEFLKALRELCDEHG--ALLILDEVQTG--LGRTG 234 (404)
T ss_pred CCCHHHHHHHHHHHHHhC--eEEEEeccccC--CCccc
Confidence 357788999999999988 46667789999 99999
No 94
>PRK08999 hypothetical protein; Provisional
Probab=29.68 E-value=2.4e+02 Score=23.99 Aligned_cols=28 Identities=18% Similarity=-0.029 Sum_probs=16.5
Q ss_pred EEEEeccCCHHHHHHHHHhcCCeeeeccH
Q 028985 37 VVAVSKTKPVSLIRQVYDAGHRSFGENYV 65 (200)
Q Consensus 37 l~aVvKahg~~~i~~~~~~G~~~fgva~v 65 (200)
+++++ +|...++..+.+.|+++++.+-+
T Consensus 228 ~ig~S-~h~~~~~~~a~~~~~dyi~~gpv 255 (312)
T PRK08999 228 WVAAS-CHDAEELARAQRLGVDFAVLSPV 255 (312)
T ss_pred EEEEe-cCCHHHHHHHHhcCCCEEEECCC
Confidence 34443 46666665556667777666544
No 95
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=29.15 E-value=90 Score=20.28 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 110 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 110 s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
+.+++..|.+.+++.|. -.+.+-+...+-=.|++++++.++.+.+.
T Consensus 22 ~~~~l~~la~ia~~yg~----~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGD----GEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EHHHHHHHHHHHHHHST----SEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC----CeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 67788888888888773 33445444334456788889998888775
No 96
>PRK07328 histidinol-phosphatase; Provisional
Probab=28.69 E-value=1.9e+02 Score=24.31 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCC---ChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCC--CchHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI---DPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFR 186 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~---~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~--~~~~~F~ 186 (200)
+..+.+-+.+.+.| +.|+|||+ .-|.|. .| ..++++... .+ ++. .|..+.+-. .....|.
T Consensus 177 ~~~~~il~~~~~~g-----~~lEiNt~--~~r~~~~~~yp--~~~il~~~~-~~-g~~----itigSDAH~~~~vg~~~~ 241 (269)
T PRK07328 177 ELYEEALDVIAAAG-----LALEVNTA--GLRKPVGEIYP--SPALLRACR-ER-GIP----VVLGSDAHRPEEVGFGFA 241 (269)
T ss_pred HHHHHHHHHHHHcC-----CEEEEEch--hhcCCCCCCCC--CHHHHHHHH-Hc-CCC----EEEeCCCCCHHHHhccHH
Confidence 44466666666655 57899998 555553 22 134445544 43 222 455544333 2234689
Q ss_pred HHHHHHHhccc
Q 028985 187 VMDFSFRRAHV 197 (200)
Q Consensus 187 ~l~~~~~~~~~ 197 (200)
++.+++++.|+
T Consensus 242 ~a~~~l~~~G~ 252 (269)
T PRK07328 242 EALALLKEVGY 252 (269)
T ss_pred HHHHHHHHcCC
Confidence 89998888775
No 97
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.42 E-value=4.5e+02 Score=23.79 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=44.2
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
-.+||-+.+|. .|+| |...++..++++.+.+..|++.+.+=+-.+-.. +..+.|++..++.++.+
T Consensus 251 ~~l~iglQSgsd~vLk~M~R-~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPg--ET~edf~~tl~fi~~~~ 320 (434)
T PRK14330 251 KSIHLPVQSGSNRILKLMNR-RYTREEYLELIEKIRSKVPDASISSDIIVGFPT--ETEEDFMETVDLVEKAQ 320 (434)
T ss_pred CceecCcCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcC
Confidence 35888889884 3667 567889999999987334787766543332222 34667888888877654
No 98
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.30 E-value=4.4e+02 Score=24.59 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=43.6
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+||=+.+|. .|+| |...+++.++++.+.+..|++.+..=|-.+- +.+..+.|.+..++.++.+
T Consensus 268 ~~l~lglQSgsd~iLk~m~R-~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGf--PgET~edf~~Tl~~i~~~~ 337 (502)
T PRK14326 268 PQLHMPLQSGSDRVLRAMRR-SYRSERFLGILEKVRAAMPDAAITTDIIVGF--PGETEEDFQATLDVVREAR 337 (502)
T ss_pred CcEEeccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEEEEEEC--CCCCHHHHHHHHHHHHHcC
Confidence 45888888875 3667 5778899999998872347776654222221 2235677888888877654
No 99
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.11 E-value=61 Score=25.12 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=28.7
Q ss_pred CeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEE--EeecCC
Q 028985 128 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL--MTIGMP 176 (200)
Q Consensus 128 ~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~Gl--mTh~a~ 176 (200)
..++.+=+ -|--|-+.|+.|+++.++++.+. + + .+.|+ |.||..
T Consensus 85 ~aDvvVLl-GGLaMP~~gv~~d~~kel~ee~~-~-k--kliGvCfm~mF~r 130 (154)
T COG4090 85 SADVVVLL-GGLAMPKIGVTPDDAKELLEELG-N-K--KLIGVCFMNMFER 130 (154)
T ss_pred cccEEEEE-cccccCcCCCCHHHHHHHHHhcC-C-C--ceEEeeHHHHHHH
Confidence 34554333 22239999999999999998764 2 3 66776 455543
No 100
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.84 E-value=2.5e+02 Score=25.57 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=44.4
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+||-+.+|. .|+| |...++..+.++.+.+..|++.+.+=+-.+-.. +..+.|++..++.++.+
T Consensus 266 ~~l~igiQSgsd~vLk~m~R-~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPg--ET~edf~~tl~~l~~~~ 335 (448)
T PRK14333 266 EHFHIPFQSGDNEILKAMAR-GYTHEKYRRIIDKIREYMPDASISADAIVGFPG--ETEAQFENTLKLVEEIG 335 (448)
T ss_pred ccccCCCccCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCC--CCHHHHHHHHHHHHHcC
Confidence 45778888885 3677 567899999999887345887775533322122 35677888888877654
No 101
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=27.67 E-value=2.6e+02 Score=20.74 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=35.3
Q ss_pred eeeeccHHHHHHHhcCCCCCcccccc-CCCChHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 028985 59 SFGENYVQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 59 ~fgva~v~Ea~~lr~~~~~~i~~~~i-G~~~~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~ 126 (200)
.+|.++.+-+.+..+.+...+.+... ..+......... +.++++ .+.++.+.-..+++.|++.+.
T Consensus 49 ~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~---~~~diVi~~~d~~~~~~~l~~~~~~~~i 115 (143)
T cd01483 49 DIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNLDDFL---DGVDLVIDAIDNIAVRRALNRACKELGI 115 (143)
T ss_pred HCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 34556666665544443322322222 223332223444 235655 467888887889999988765
No 102
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=27.59 E-value=4.1e+02 Score=23.04 Aligned_cols=145 Identities=13% Similarity=0.089 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHH-H--HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccc-c
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-I--RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKW-H 82 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~-i--~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~-~ 82 (200)
-++.....-|..+.+++.+.++. +++.++.-=|+++... . .++.-.|....- ..+.+..-.... .+-+-.| .
T Consensus 88 Ln~L~~~SgIAT~t~~~v~~~~~--~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~hr-~~l~d~~l~~~~~Gti~H~~I~ 164 (302)
T cd01571 88 LGILARASSIATNAARVKLAAGD--KPVISFGDRRDHPAIQPMDGRAAYIGGCDGVS-TVLGAELLGEKPSGTMPHALIQ 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CcEEEeecccCCcchhHHHHHHHHhcCcccee-hHHHHhhcCCCceechhhHHHH
Confidence 34445667778888888887765 5788888889988633 2 333444554322 122333211110 1011112 1
Q ss_pred ccCCCChHHHHhHhccCC-CccEEEeeCcHHH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 83 FVGHLQSNKAKTLLGGVP-NLDMVEGVGNEKI-ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 83 ~iG~~~~~~~~~~~~~~~-~~~~~~sv~s~~~-a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
+.|.-..+.++.+.+.++ ...++.-+|+++. +...-+.+...+. .++ .|++|+- .++.|..|+++.++.+.+.
T Consensus 165 ~~g~~~~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~-~~d-~I~lDn~--~~~~G~~~~~~~~~~~~l~ 239 (302)
T cd01571 165 IFGGDQVEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGD-KLD-GVRLDTP--SSRRGVFRYLIREVRWALD 239 (302)
T ss_pred HcCchHHHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCC-CCc-EEEECCC--CCCCCCHHHHHHHHHHHHH
Confidence 223311122233321112 2346666777663 3322233332222 233 4689987 5688998888888888875
No 103
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.43 E-value=2.4e+02 Score=25.79 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred CeeEEEEEeCCCC-----CCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 128 PLKVLVQVNTSGE-----ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 128 ~~~v~lkvdtG~e-----m~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
...+|+-+.+|.+ |+| |...++..+.++.+.+..|++.+.+-+-.+-.. +..+.|++..++.++.+
T Consensus 268 c~~l~iglQSgsd~vLk~m~R-~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPg--ET~edf~~Tl~~i~~l~ 338 (455)
T PRK14335 268 CRLVHLPVQHGSNGVLKRMNR-SYTREHYLSLVGKLKASIPNVALSTDILIGFPG--ETEEDFEQTLDLMREVE 338 (455)
T ss_pred CCeEEEccCcCCHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHHhcC
Confidence 3568888888732 667 677899999999987346898765433333222 34677888888877654
No 104
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.95 E-value=3.1e+02 Score=22.60 Aligned_cols=30 Identities=3% Similarity=-0.117 Sum_probs=16.6
Q ss_pred EEEEEeccCCHHHHHHHHHhcCCeeeeccH
Q 028985 36 RVVAVSKTKPVSLIRQVYDAGHRSFGENYV 65 (200)
Q Consensus 36 ~l~aVvKahg~~~i~~~~~~G~~~fgva~v 65 (200)
.+++++=.|....+.++.+.|++|++..-+
T Consensus 111 ~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 111 MIVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred CEEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 456665334444444455667777666544
No 105
>PRK07534 methionine synthase I; Validated
Probab=26.83 E-value=3.3e+02 Score=24.01 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=31.5
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHH
Q 028985 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIV 155 (200)
Q Consensus 104 ~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~ 155 (200)
+..|+.+++.++.+-+.+++.+. ++=|-+-++.++ -.+.|.+.+++.+.+
T Consensus 149 ~~ET~p~l~E~~a~~~~~~~~~~-Pv~vSft~~~~g-~l~~G~~~~~~~~~~ 198 (336)
T PRK07534 149 WVETISAPEEIRAAAEAAKLAGM-PWCGTMSFDTAG-RTMMGLTPADLADLV 198 (336)
T ss_pred EEeccCCHHHHHHHHHHHHHcCC-eEEEEEEECCCC-eeCCCCcHHHHHHHH
Confidence 45789999999999998887664 444444443331 345676555555444
No 106
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=26.54 E-value=1.9e+02 Score=25.20 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCC-chHHHHHHHHHHHh
Q 028985 130 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS-TPENFRVMDFSFRR 194 (200)
Q Consensus 130 ~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~-~~~~F~~l~~~~~~ 194 (200)
+|+|-.|+| ++ . ..+|+..++=.+ ..|.+++.||-|-+++..-+ ...+-..+.+++.+
T Consensus 1 kvIiDtD~G--~~-~--d~DDa~Al~lal--~~p~~el~gIt~v~GN~~~~~~~~Na~~ll~~~g~ 59 (318)
T cd02654 1 KVILDNDIA--MG-R--DTDDGLALALLL--WSPEVELLGLSAVSGNCWLSAVTYNVLRMLELAGA 59 (318)
T ss_pred CEEEEcCCC--CC-C--CccHHHHHHHHh--hCCCceEEEEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 366666666 44 1 236777766544 56899999999999876532 22334444444433
No 107
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=26.45 E-value=66 Score=27.49 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHhcCCeeee--ccHHHHHHHhcC----CCCC--ccccccCCCChHHHHhHhccCCCccEEEeeCcH
Q 028985 49 IRQVYDAGHRSFGE--NYVQEIVDKAPQ----LPED--IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNE 111 (200)
Q Consensus 49 i~~~~~~G~~~fgv--a~v~Ea~~lr~~----~~~~--i~~~~iG~~~~~~~~~~~~~~~~~~~~~sv~s~ 111 (200)
++.++++|...+|| +..++|.++|+- .... +.-|.-| +..++.+.++ +++|++.+--|-
T Consensus 155 v~kAie~Gyk~IaVTV~~~~~A~~iRele~~~~~~~~if~VHtTG-is~eeA~~l~---~~~Divt~CASk 221 (258)
T PF09872_consen 155 VKKAIEMGYKRIAVTVADAEDAKKIRELEKEEGVNIYIFGVHTTG-ISEEEAERLF---EYADIVTSCASK 221 (258)
T ss_pred HHHHHHcCCceEEEEecCHHHHHHHHHhhccCCCceEEEEEEccC-CCHHHHHHHH---HHhHHHHHhhhH
Confidence 46788999999887 788999999883 1111 2334434 5777888888 468887665553
No 108
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.02 E-value=4.7e+02 Score=23.65 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=43.6
Q ss_pred CeeEEEEEeCCCC-----CCcCCCChhhHHHHHHHHHhcCCCeEEeEE-EeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 128 PLKVLVQVNTSGE-----ESKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 128 ~~~v~lkvdtG~e-----m~R~G~~~e~~~~~~~~i~~~~~~l~~~Gl-mTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
...+||-+.+|.+ |+| |...++..+.++.+.+..|++.+..- |.=|| .+..+.|.+..++.++..
T Consensus 240 ~~~l~iglQSgsd~vLk~M~R-~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfP---gETeedf~~Tl~fl~~l~ 310 (420)
T PRK14339 240 CKSIHMPLQSGSSEILKAMKR-GYTKEWFLNRAEKLRALVPEVSISTDIIVGFP---GESDKDFEDTMDVLEKVR 310 (420)
T ss_pred cCceEeCCccCCHHHHHhccC-CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECC---CCCHHHHHHHHHHHHhcC
Confidence 3568889999743 677 66788888888888733478776553 22222 234677888888776543
No 109
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=25.90 E-value=2.6e+02 Score=22.96 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEeCCC------CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHH
Q 028985 114 ANHLDKAVSNLGRKPLKVLVQVNTSG------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRV 187 (200)
Q Consensus 114 a~~l~~~a~~~g~~~~~v~lkvdtG~------em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~ 187 (200)
...+.+.|.+.|+ .+=+|+-+..-+ +.-..|..++++...++....+.| ...|+..|-+.--......++.
T Consensus 34 ~~~~a~~a~~~G~-EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp--~a~GvnNhmGS~~T~~~~~m~~ 110 (213)
T PF04748_consen 34 SREWAERARAAGH-EVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVP--GAVGVNNHMGSRFTSDREAMRW 110 (213)
T ss_dssp HHHHHHHHHHCT--EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCST--T-SEEEEEE-CCHHC-HHHHHH
T ss_pred hHHHHHHHHHcCC-EEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCC--CcEEEecCCCccccCCHHHHHH
Confidence 4456667777887 766766654432 222445667777777665542667 5789999987643334556677
Q ss_pred HHHHHHhccc
Q 028985 188 MDFSFRRAHV 197 (200)
Q Consensus 188 l~~~~~~~~~ 197 (200)
+.+.+++.|.
T Consensus 111 vl~~l~~~gl 120 (213)
T PF04748_consen 111 VLEVLKERGL 120 (213)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHcCC
Confidence 7776666654
No 110
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=25.80 E-value=2.3e+02 Score=23.45 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 111 ~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
.+....+.+.+...|. . +||-+|| .+..|..++++.-+.+.+.
T Consensus 135 ~e~i~~a~~~~~~aga-d---fIKTsTG--~~~~gat~~~v~~m~~~~~ 177 (221)
T PRK00507 135 DEEKVKACEIAKEAGA-D---FVKTSTG--FSTGGATVEDVKLMRETVG 177 (221)
T ss_pred HHHHHHHHHHHHHhCC-C---EEEcCCC--CCCCCCCHHHHHHHHHHhC
Confidence 3446777777877775 3 8888888 8888888888777766654
No 111
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.41 E-value=4.1e+02 Score=24.39 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=41.5
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..++|-+++|. .|+| |...+++.+.++.+.+..|++.+..-+-.+-.. +..+.|.+..++.++.+
T Consensus 266 ~~v~lglQSgsd~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~Pg--ET~ed~~~ti~~l~~l~ 335 (459)
T PRK14338 266 PHINLPVQAGDDEVLKRMRR-GYTVARYRELIARIREAIPDVSLTTDIIVGHPG--ETEEQFQRTYDLLEEIR 335 (459)
T ss_pred cceecCcccCCHHHHHhccC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHHcC
Confidence 45888888874 3566 457788999888887335777754322222112 34667888888777654
No 112
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=24.97 E-value=1.7e+02 Score=24.77 Aligned_cols=81 Identities=16% Similarity=0.327 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCC--C--ChhhHHHHHHHHHh-cCC-CeEEeEEEeecCCCCCCchHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG--I--DPSSCLGIVEHVRL-RCP-NLEFSGLMTIGMPDYTSTPENF 185 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G--~--~~e~~~~~~~~i~~-~~~-~l~~~GlmTh~a~~~~~~~~~F 185 (200)
+.+++|.++..+.|.....=-+++|+= +-+| | .++.+.+.+..+.+ ..| .|+++|=|-... .+.|.+.+
T Consensus 51 eYv~Wl~~Ri~~lg~~~Y~P~lHiDVY---GtiG~~f~~d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~--r~~QI~~l 125 (248)
T PF07476_consen 51 EYVKWLKDRIRELGDEDYRPVLHIDVY---GTIGLAFDNDPDRMADYLAELEEAAAPFKLRIEGPMDAGS--REAQIEAL 125 (248)
T ss_dssp HHHHHHHHHHHHHSSTT---EEEEE-T---THHHHHTTT-HHHHHHHHHHHHHHHTTS-EEEE-SB--SS--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccEEEEcc---chHHHHhCCCHHHHHHHHHHHHHhcCCCeeeeeCCcCCCC--hHHHHHHH
Confidence 345566655554442233333567775 3334 3 23444455444431 234 799999776652 22588999
Q ss_pred HHHHHHHHhccc
Q 028985 186 RVMDFSFRRAHV 197 (200)
Q Consensus 186 ~~l~~~~~~~~~ 197 (200)
..+++.++++++
T Consensus 126 ~~Lr~~L~~~g~ 137 (248)
T PF07476_consen 126 AELREELDRRGI 137 (248)
T ss_dssp HHHHHHHHHCT-
T ss_pred HHHHHHHHhcCC
Confidence 999999988875
No 113
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.85 E-value=5.4e+02 Score=23.56 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=44.2
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeE-EEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSG-LMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~G-lmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+||-+.+|. .|+| |...++..++++.+.+..|++.+.. +|.=|| .+..+.|++..++.++.+
T Consensus 262 ~~l~lgvQSgsd~vLk~m~R-~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfP---gET~edf~~tl~~v~~l~ 331 (449)
T PRK14332 262 PNIHLPLQAGNTRVLEEMKR-SYSKEEFLDVVKEIRNIVPDVGITTDIIVGFP---NETEEEFEDTLAVVREVQ 331 (449)
T ss_pred ceEEECCCcCCHHHHHhhCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCC---CCCHHHHHHHHHHHHhCC
Confidence 35888888885 4667 6778999999998873468887654 222222 235677888888877654
No 114
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.66 E-value=2.5e+02 Score=25.76 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=45.6
Q ss_pred CeeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 128 PLKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 128 ~~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
...+||-+.+|. .|+| |...++..+.++.+.+..|++.+.+-+-.+-.. +..+.|++..++.++.+
T Consensus 258 ~~~l~iglQSgsd~vLk~m~R-~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPg--ET~edf~~tl~~~~~~~ 328 (445)
T PRK14340 258 CNHIHLPVQSGSSRMLRRMNR-GHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCG--ETEEDHRATLSLMEEVR 328 (445)
T ss_pred CCeEEECCCcCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEeccEEEECCC--CCHHHHHHHHHHHHhcC
Confidence 346888888884 3566 667899999999997346899876533222122 35677888888877654
No 115
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=24.64 E-value=2.7e+02 Score=22.56 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=30.6
Q ss_pred CeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC---eEEeEEEeecCCCC
Q 028985 128 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN---LEFSGLMTIGMPDY 178 (200)
Q Consensus 128 ~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~---l~~~GlmTh~a~~~ 178 (200)
...+-|..|.+ .+|+. +...|++.+++.+|. |.|.|+++=....+
T Consensus 43 v~giQIDfDa~--t~~L~----~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~~~ 90 (181)
T PF11340_consen 43 VAGIQIDFDAA--TSRLP----AYAQFLQQLRQRLPPDYRLSITALPDWLSSPD 90 (181)
T ss_pred ceEEEEecCcc--ccchH----HHHHHHHHHHHhCCCCceEeeEEehhhhcCch
Confidence 45555555555 55543 678888888767886 88999998765443
No 116
>PRK07877 hypothetical protein; Provisional
Probab=24.50 E-value=5.2e+02 Score=25.52 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCcEEEEEeccCCHHHHHHHHHhcC------------------------CeeeeccHHHHHHHhcCCCCCcccc-ccCCC
Q 028985 33 EQIRVVAVSKTKPVSLIRQVYDAGH------------------------RSFGENYVQEIVDKAPQLPEDIKWH-FVGHL 87 (200)
Q Consensus 33 ~~v~l~aVvKahg~~~i~~~~~~G~------------------------~~fgva~v~Ea~~lr~~~~~~i~~~-~iG~~ 87 (200)
..|-|+++ +.|...+..+..+|+ ..+|.++++-+.+....+...+... +...+
T Consensus 108 ~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 35777777 467766667777886 3466777777766555544333222 23456
Q ss_pred ChHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 028985 88 QSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~ 126 (200)
..+.+..++. .+|++ ...|+++.=..++++|.+.|+
T Consensus 186 ~~~n~~~~l~---~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 186 TEDNVDAFLD---GLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred CHHHHHHHhc---CCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 6677888873 46655 577888877789999998775
No 117
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=24.32 E-value=3.9e+02 Score=24.22 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=42.4
Q ss_pred eeEEEEEeCCCC-----CCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSGE-----ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~e-----m~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+|+-+.+|.+ |+| |...+++.+.++.+.+..|++.+..=+-.+-.. +..+.|.+..++.++.+
T Consensus 258 ~~l~iglQSgsd~vLk~m~R-~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~Pg--Et~ed~~~tl~~i~~~~ 327 (438)
T TIGR01574 258 KSMHLPVQSGSSEILKLMKR-GYTREWYLNLVRKLRAACPNVSISTDIIVGFPG--ETEEDFEETLDLLREVE 327 (438)
T ss_pred CceeeCCCcCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCC--CCHHHHHHHHHHHHhcC
Confidence 457888888853 667 567788999998887335787764322222222 34667888888776654
No 118
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=24.29 E-value=2.4e+02 Score=24.08 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCcEEEEEecc----CC-------HHHH-HHHHHhcCCeeeecc--------HHHHHHHhcCCCCCc-cccc-cCCCChH
Q 028985 33 EQIRVVAVSKT----KP-------VSLI-RQVYDAGHRSFGENY--------VQEIVDKAPQLPEDI-KWHF-VGHLQSN 90 (200)
Q Consensus 33 ~~v~l~aVvKa----hg-------~~~i-~~~~~~G~~~fgva~--------v~Ea~~lr~~~~~~i-~~~~-iG~~~~~ 90 (200)
.++.++|=+|- .| ...+ +...+.|+..+.|=+ ++-....|.....|+ .=-| +.+.|-.
T Consensus 44 ~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~ 123 (254)
T COG0134 44 GKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIY 123 (254)
T ss_pred CCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHH
Confidence 35688998884 33 2334 444567798877744 344434444433342 1123 2444433
Q ss_pred HHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC
Q 028985 91 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 141 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em 141 (200)
..+.+-. +-.=++.++=+.+.++.|.+.|...|. .++++|....|+
T Consensus 124 ~Ar~~GA--DavLLI~~~L~~~~l~el~~~A~~LGm---~~LVEVh~~eEl 169 (254)
T COG0134 124 EARAAGA--DAVLLIVAALDDEQLEELVDRAHELGM---EVLVEVHNEEEL 169 (254)
T ss_pred HHHHcCc--ccHHHHHHhcCHHHHHHHHHHHHHcCC---eeEEEECCHHHH
Confidence 3332210 112233445556678888888888774 788898876443
No 119
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.05 E-value=4.9e+02 Score=23.72 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=43.3
Q ss_pred CeeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 128 PLKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 128 ~~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
...+||-+.+|. -|+| |...+++.+.++.+.+..|++.+..=+-.+-. .+..+.|++..++.++.+
T Consensus 259 ~~~l~iglQSgsd~vLk~M~R-~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~P--gET~ed~~~tl~~l~~~~ 329 (446)
T PRK14337 259 CPRLHLPLQSGSDRILKAMGR-KYDMARYLDIVTDLRAARPDIALTTDLIVGFP--GETEEDFEQTLEAMRTVG 329 (446)
T ss_pred cCeEEECCCCCCHHHHHhCCC-CCCHHHHHHHHHHHHHhCCCCeEEEeEEEECC--CCCHHHHHHHHHHHHhcC
Confidence 346888888884 3667 56778999999988734577754432222211 234677888888877654
No 120
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.03 E-value=4.5e+02 Score=22.35 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeec--cHHHHHHHhcCCCCCccccccCCCChHHHHhH
Q 028985 18 LHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGEN--YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTL 95 (200)
Q Consensus 18 ~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva--~v~Ea~~lr~~~~~~i~~~~iG~~~~~~~~~~ 95 (200)
...+..+++..+. + +.+.| =.|..+++.++.++|+++++.- ++++..+..+.+...+.+..+|.+..+.+..+
T Consensus 169 ~~~v~~~r~~~~~---~-~~Igv-ev~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~ 243 (268)
T cd01572 169 TEAVRRARAAAPF---T-LKIEV-EVETLEQLKEALEAGADIIMLDNMSPEELREAVALLKGRVLLEASGGITLENIRAY 243 (268)
T ss_pred HHHHHHHHHhCCC---C-CeEEE-EECCHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHH
Confidence 4455566666532 2 23444 3477788877788999986553 34444433333332333467799998888888
Q ss_pred hccCCCccEEE
Q 028985 96 LGGVPNLDMVE 106 (200)
Q Consensus 96 ~~~~~~~~~~~ 106 (200)
++ -..+.+.
T Consensus 244 a~--~Gvd~Ia 252 (268)
T cd01572 244 AE--TGVDYIS 252 (268)
T ss_pred HH--cCCCEEE
Confidence 74 2355544
No 121
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=23.36 E-value=1.4e+02 Score=27.85 Aligned_cols=105 Identities=18% Similarity=0.322 Sum_probs=63.6
Q ss_pred HHHHHhcCCeeeec---cHHHHHHH----hcCCCCCcccc-ccCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHH
Q 028985 50 RQVYDAGHRSFGEN---YVQEIVDK----APQLPEDIKWH-FVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV 121 (200)
Q Consensus 50 ~~~~~~G~~~fgva---~v~Ea~~l----r~~~~~~i~~~-~iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a 121 (200)
...++.|..++... .++||+.. ....++--.++ ++|. +..++ -.++..++..+.=++|....
T Consensus 57 ~kfl~qGs~fLeL~pp~DldeAln~L~IlY~HVPSVT~~PVylG~-----LD~lL-----~Pfv~~l~eee~~~klk~Fl 126 (487)
T PF11230_consen 57 AKFLKQGSEFLELEPPKDLDEALNNLLILYHHVPSVTSFPVYLGQ-----LDRLL-----EPFVQGLDEEEAYKKLKLFL 126 (487)
T ss_pred HHHHhccchhcccCCcccHHHHHHhhhHHhhcCCccCCccceecc-----Hhhhh-----cccccCCCHHHHHHHHHHHH
Confidence 44566787776654 34455432 11112100111 4576 44566 34666677766667777777
Q ss_pred HhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEE
Q 028985 122 SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 122 ~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~ 167 (200)
....++..+-+.+.|+|.+.+|.|= -+.++-.++++..||+.+
T Consensus 127 ~~lDRTi~DsF~HaNIGP~dt~~gr---lIL~~~~EL~~~~PNlTl 169 (487)
T PF11230_consen 127 IHLDRTIPDSFCHANIGPEDTRAGR---LILRVDAELQQAVPNLTL 169 (487)
T ss_pred HHhhccCcchhhccCCCCcccHHHH---HHHHHHHHHhccCCCeeE
Confidence 7777634457888999999999993 345555566545699886
No 122
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.29 E-value=3e+02 Score=20.12 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=38.2
Q ss_pred ccCCCChHHHHhHhccCCCccEEEee--Cc--HH--HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHH
Q 028985 83 FVGHLQSNKAKTLLGGVPNLDMVEGV--GN--EK--IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE 156 (200)
Q Consensus 83 ~iG~~~~~~~~~~~~~~~~~~~~~sv--~s--~~--~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~ 156 (200)
+-|.+.++.++.+.+ .-+..+..+ |. .+ ....+.+.|++.|. .. +|+-|+-+ ++.++++..|.+
T Consensus 11 vs~Q~~~~d~~~la~--~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y-~~iPv~~~------~~~~~~v~~f~~ 80 (110)
T PF04273_consen 11 VSGQPSPEDLAQLAA--QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-QY-VHIPVDGG------AITEEDVEAFAD 80 (110)
T ss_dssp EECS--HHHHHHHHH--CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EE-EE----TT------T--HHHHHHHHH
T ss_pred ECCCCCHHHHHHHHH--CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-eE-EEeecCCC------CCCHHHHHHHHH
Confidence 447778888888874 335554444 11 11 23446778888886 43 66666655 477889999988
Q ss_pred HHHhcCCC
Q 028985 157 HVRLRCPN 164 (200)
Q Consensus 157 ~i~~~~~~ 164 (200)
.+. .+|+
T Consensus 81 ~l~-~~~~ 87 (110)
T PF04273_consen 81 ALE-SLPK 87 (110)
T ss_dssp HHH-TTTT
T ss_pred HHH-hCCC
Confidence 887 7765
No 123
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.26 E-value=3.4e+02 Score=21.16 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=33.5
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEee
Q 028985 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 173 (200)
Q Consensus 104 ~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh 173 (200)
+...++..+.+..+-+.+.+.+. ++=+ .| =.++.+.++.+.+.+.+|++++.|...=
T Consensus 27 ~~~rv~g~dl~~~l~~~~~~~~~-~ifl-----lG-------~~~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 27 LPERVTGSDLFPDLLRRAEQRGK-RIFL-----LG-------GSEEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred CCcccCHHHHHHHHHHHHHHcCC-eEEE-----Ee-------CCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 33556667777776666665543 3322 12 3455666666666546777877776543
No 124
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=23.10 E-value=3.9e+02 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=23.5
Q ss_pred CChhhHHHHHHHHHhcCCCeEEeEEEeecCCC
Q 028985 146 IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 146 ~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
++..+..+.++... ..|.+++..+|-|.|--
T Consensus 139 vs~~~~l~~~e~~~-~~p~v~LiSlMDH~PGQ 169 (377)
T COG3454 139 VSHPATLPLFEDLM-DHPRVKLISLMDHTPGQ 169 (377)
T ss_pred cCChhHHHHHHHHh-cCCCeeEEEecCCCCCc
Confidence 33455666677776 88999999999998753
No 125
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=23.09 E-value=3.1e+02 Score=20.43 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=37.0
Q ss_pred ccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh
Q 028985 102 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP 148 (200)
Q Consensus 102 ~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~ 148 (200)
..++.-++|.+.+..|.+.+.+.|. +..++.|+.-|+ .+=+|+.|
T Consensus 56 ~KVVLkv~~e~eL~~L~~~a~~~gi-~~~l~te~p~gt-~T~LaigP 100 (116)
T cd02429 56 HKVVLEVPDEAALKNLSSKLTENSI-KHKLWIEQPENI-PTCIALKP 100 (116)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEEcCCCC-ceEEEeCC
Confidence 4677889999999999999999997 888999987662 34577766
No 126
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=22.96 E-value=5.5e+02 Score=22.95 Aligned_cols=149 Identities=12% Similarity=0.101 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH---HHHHHhcCCeeeeccHHHHHHHhcC---CCCCccc
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI---RQVYDAGHRSFGENYVQEIVDKAPQ---LPEDIKW 81 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i---~~~~~~G~~~fgva~v~Ea~~lr~~---~~~~i~~ 81 (200)
-++.+...-|..+.+++...++. ..+..++-=|+|+.... ++..=.|.+.+.. ..+....-. .+.|-+|
T Consensus 107 LnlL~~~SgIAT~a~r~v~aA~~--~~~~~~gTRKt~p~~~~~~~~Aa~igG~~~~s~---~a~~~~~g~~~~GTmpH~l 181 (352)
T PRK07188 107 DGILARRTSVATNAYNVVQAANE--KPVIFMGDRADHYLQQAGDGYAAYIGGISAFST---HAQNEWWGKSGFGTMPHAL 181 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CCeEEEecCCCCccchhHhhHHhhcCCcHHHHH---HHHHhcCCCCCcchHHHHH
Confidence 34445566677777777777752 45667776677876332 2233335544422 112111110 1112222
Q ss_pred c-cc-CCCChHHHHhHhccCCCccEEEeeC----cHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC---------------
Q 028985 82 H-FV-GHLQSNKAKTLLGGVPNLDMVEGVG----NEKIANHLDKAVSNLGRKPLKVLVQVNTSGE--------------- 140 (200)
Q Consensus 82 ~-~i-G~~~~~~~~~~~~~~~~~~~~~sv~----s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e--------------- 140 (200)
. +. |. ...-++.+.+..+.-+++.-|| +.+.+. +.++..|. .+ .-|-+|||++
T Consensus 182 i~~~~g~-~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al---~~a~~~g~-~l-~gVRlDs~gdl~DK~~~~~~~~~~~ 255 (352)
T PRK07188 182 IQMFNGD-VVEACKAYHKTFPEDELIALVDYNNDVITDSL---KVAREFGD-KL-KGVRVDTSKNMIDKYFIRHPEVLGT 255 (352)
T ss_pred HHHCCCc-HHHHHHHHHHHCCCCCeEEEEecCcccHHHHH---HHHHHhCC-Cc-cEEEeCCcchHhhhhcccccccccc
Confidence 1 22 32 1233333332223334665566 444333 33443454 33 2467899755
Q ss_pred CCcCCCChhhHHHHHHHHHh-cCCCeEE
Q 028985 141 ESKSGIDPSSCLGIVEHVRL-RCPNLEF 167 (200)
Q Consensus 141 m~R~G~~~e~~~~~~~~i~~-~~~~l~~ 167 (200)
.+|.|+.++.+.++.+.+.+ .+|+++|
T Consensus 256 ~~~~G~~~~l~~~vr~~Ld~~g~~~vkI 283 (352)
T PRK07188 256 FDPRGVNPELIKALRKALDENGGKHVKI 283 (352)
T ss_pred cccccccHHHHHHHHHHHhhCCCCCcEE
Confidence 47889999988888887742 2355554
No 127
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=22.89 E-value=4e+02 Score=21.33 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=21.7
Q ss_pred CccEEE-eeCcHHHHHHHHHHHHhcCCCCe
Q 028985 101 NLDMVE-GVGNEKIANHLDKAVSNLGRKPL 129 (200)
Q Consensus 101 ~~~~~~-sv~s~~~a~~l~~~a~~~g~~~~ 129 (200)
.++++. +.++.+....+++.|.+.+. ++
T Consensus 110 ~~dvVi~~~~~~~~~~~ln~~c~~~~i-p~ 138 (197)
T cd01492 110 QFDVVVATELSRAELVKINELCRKLGV-KF 138 (197)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCC-CE
Confidence 467654 56888888999999998876 53
No 128
>PRK05588 histidinol-phosphatase; Provisional
Probab=22.79 E-value=4.4e+02 Score=21.76 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCC--CchHHHHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRVMD 189 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~--~~~~~F~~l~ 189 (200)
..++.+-+++.+.| +-|+|||++ ..+ +........+++... ... .. ++|..+.+-. +....|..+.
T Consensus 166 ~~~~~il~~~~~~g-----~~lEINt~~-l~~-~~~~~~~~~~l~~~~-~~g-~~---~i~lgSDAH~~~~vg~~~~~~~ 233 (255)
T PRK05588 166 EIIDEILKVLIEKE-----KVLEINTRR-LDD-KRSVENLVKIYKRFY-ELG-GK---YITLGSDAHNIEDIGNNFKFAL 233 (255)
T ss_pred HHHHHHHHHHHHcC-----CEEEEECcc-cCC-CCCCCCHHHHHHHHH-HcC-Cc---EEEEECCCCCHHHHHhhHHHHH
Confidence 33455556665555 568999973 333 322222344455544 322 11 2566654433 2335799999
Q ss_pred HHHHhccc
Q 028985 190 FSFRRAHV 197 (200)
Q Consensus 190 ~~~~~~~~ 197 (200)
+++++.|.
T Consensus 234 ~~l~~~G~ 241 (255)
T PRK05588 234 EIAEYCNL 241 (255)
T ss_pred HHHHHcCC
Confidence 99988875
No 129
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=22.76 E-value=4e+02 Score=24.84 Aligned_cols=62 Identities=8% Similarity=0.131 Sum_probs=46.2
Q ss_pred cEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC--CcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 103 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--SKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 103 ~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em--~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.++..=+|.++++-+.+.+.+... ..+|.|..--|++. +++|-.++.+.+.++.+. ...++-
T Consensus 3 ~iviVSHs~~la~g~~~l~~qm~~-~~~v~i~~agG~~d~~~~~Gt~~~~i~~ai~~~~-~~~gv~ 66 (473)
T PRK11377 3 NLVIVSHSARLGEGVGELARQMLM-SDGCKLAIAAGIDDPQNPIGTDAVKVMEAIESVA-DADHVL 66 (473)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCCCCCCCCHHHHHHHHHhcc-CCCCEE
Confidence 345555889999999999988732 33677777777777 899999988888888775 544443
No 130
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=22.23 E-value=3.7e+02 Score=21.87 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=47.0
Q ss_pred cCCHHHHHHHHHhcCCee-----------------------eeccHHHHHHHhcCCCCCccccc-cCCCChHHHHhHhcc
Q 028985 43 TKPVSLIRQVYDAGHRSF-----------------------GENYVQEIVDKAPQLPEDIKWHF-VGHLQSNKAKTLLGG 98 (200)
Q Consensus 43 ahg~~~i~~~~~~G~~~f-----------------------gva~v~Ea~~lr~~~~~~i~~~~-iG~~~~~~~~~~~~~ 98 (200)
+.|+..+..+..+|+..+ |..+++.+.+....+...+.+.. -..+..+....++
T Consensus 38 glGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~-- 115 (212)
T PRK08644 38 GLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELF-- 115 (212)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHHHHHHHH--
Confidence 356666677778888633 44455544443333222232221 1344555555666
Q ss_pred CCCccEEE-eeCcHHHHHHHHHHHHhc-CC
Q 028985 99 VPNLDMVE-GVGNEKIANHLDKAVSNL-GR 126 (200)
Q Consensus 99 ~~~~~~~~-sv~s~~~a~~l~~~a~~~-g~ 126 (200)
+.++++. ++|+.+.-..+.+.|.+. ++
T Consensus 116 -~~~DvVI~a~D~~~~r~~l~~~~~~~~~~ 144 (212)
T PRK08644 116 -KDCDIVVEAFDNAETKAMLVETVLEHPGK 144 (212)
T ss_pred -cCCCEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3477766 679998877888888876 54
No 131
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.94 E-value=3.9e+02 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=17.2
Q ss_pred EEEEeccCCHHHHHHHHHhcCCeeeec
Q 028985 37 VVAVSKTKPVSLIRQVYDAGHRSFGEN 63 (200)
Q Consensus 37 l~aVvKahg~~~i~~~~~~G~~~fgva 63 (200)
+-+++=.|...++..+.++|++.+|++
T Consensus 161 l~~lvevh~~~E~~~A~~~gadiIgin 187 (260)
T PRK00278 161 LDVLVEVHDEEELERALKLGAPLIGIN 187 (260)
T ss_pred CeEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence 344455577666655666777777765
No 132
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.43 E-value=2.8e+02 Score=24.30 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChh---hHHHHHH--HHHhcCC-CeEEeEEEeecCCCCCCchHH
Q 028985 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS---SCLGIVE--HVRLRCP-NLEFSGLMTIGMPDYTSTPEN 184 (200)
Q Consensus 111 ~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e---~~~~~~~--~i~~~~~-~l~~~GlmTh~a~~~~~~~~~ 184 (200)
...++.|...+.+. .+++.+-||.|++.--.|+.+. -+.+.+. .+. +.. .-.+-|+|...+.. +-++++
T Consensus 117 ~gl~e~lk~lv~~~---~id~IvgvD~GGDaLa~GcEe~l~SPLaDai~lasL~-k~~e~g~~L~V~g~GsDG-EL~~ey 191 (328)
T COG4034 117 RGLAEGLKALVEKE---GIDLIVGVDVGGDALAVGCEEGLRSPLADAISLASLA-KVEEDGVELAVMGPGSDG-ELSREY 191 (328)
T ss_pred ccHHHHHHHHHHhh---CccEEEEeccCccceeccccccccchHHHHHHHHHHH-hhcccceEEEEEecCCCC-ceeHHH
Confidence 44556666666654 4688899999998888887652 2223222 222 222 12244555544322 345666
Q ss_pred HHHHHHHHHhcc
Q 028985 185 FRVMDFSFRRAH 196 (200)
Q Consensus 185 F~~l~~~~~~~~ 196 (200)
|.+-++..-+.+
T Consensus 192 llrriseia~eg 203 (328)
T COG4034 192 LLRRISEIAREG 203 (328)
T ss_pred HHHHHHHHHhhC
Confidence 665555444443
No 133
>PRK06740 histidinol-phosphatase; Validated
Probab=21.34 E-value=5e+02 Score=22.78 Aligned_cols=74 Identities=7% Similarity=0.040 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCC-hhhHHHHHHHHHhcCCCeEEeEEEeecCCCC--CCchHHHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY--TSTPENFRVM 188 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~-~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~--~~~~~~F~~l 188 (200)
+..+.+-+++.+.| +.|+||||. .-|-|.. +--...+++.+. .. ++. +|..+.+- ++....|..+
T Consensus 239 ~~~~~I~~a~~~~g-----~~lEINt~~-~~r~~~~e~yP~~~il~~~~-e~-Gv~----~tlgSDAH~p~~VG~~~~~a 306 (331)
T PRK06740 239 SYYKEIARALVETN-----TATEINAGL-YYRYPVREMCPSPLFLQVLA-KH-EVP----ITLSSDAHYPNDLGKYVEEN 306 (331)
T ss_pred HHHHHHHHHHHHcC-----CEEEEECcc-ccCCCCCCCCcCHHHHHHHH-HC-CCe----EEEeeCCCCHHHHHhHHHHH
Confidence 35566666666555 678999973 2243432 111134555554 43 333 34443322 2333567788
Q ss_pred HHHHHhccc
Q 028985 189 DFSFRRAHV 197 (200)
Q Consensus 189 ~~~~~~~~~ 197 (200)
.+++++.|+
T Consensus 307 ~~~l~~~G~ 315 (331)
T PRK06740 307 VKTLRNHGV 315 (331)
T ss_pred HHHHHHcCC
Confidence 888888775
No 134
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=20.66 E-value=1e+02 Score=18.78 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=18.8
Q ss_pred eEEEeecCCCCCCchHHHHHHHHHHHh
Q 028985 168 SGLMTIGMPDYTSTPENFRVMDFSFRR 194 (200)
Q Consensus 168 ~GlmTh~a~~~~~~~~~F~~l~~~~~~ 194 (200)
.|+|+-|-..+++....|++++....+
T Consensus 9 ~gvmSAyYP~ESELskr~rrLIRaa~k 35 (44)
T PF08134_consen 9 SGVMSAYYPTESELSKRIRRLIRAARK 35 (44)
T ss_pred ceeeeeecCcHHHHHHHHHHHHHHHHH
Confidence 478888877777666777777765443
No 135
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.61 E-value=5.9e+02 Score=23.06 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=42.8
Q ss_pred eeEEEEEeCCC-----CCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 129 LKVLVQVNTSG-----EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 129 ~~v~lkvdtG~-----em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
..+++-+.+|. .|+| |...+++.+.++.+.+..|++.+.+-+-.+-.. +..+.|++..++.++.+
T Consensus 260 ~~l~igiqSgs~~vLk~m~R-~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~Pg--ET~ed~~~tl~~i~~~~ 329 (444)
T PRK14325 260 PFLHLPVQSGSDRILKAMNR-GHTALEYKSIIRKLRAARPDIAISSDFIVGFPG--ETDEDFEATMKLIEDVG 329 (444)
T ss_pred CceeccCCcCCHHHHHhCCC-CCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCC--CCHHHHHHHHHHHHhcC
Confidence 45788888885 3666 467789999999887234788776533333222 34667888888776553
No 136
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=20.41 E-value=4.9e+02 Score=22.67 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=49.0
Q ss_pred ccEEEeeCcHH-HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCC---------------------CChhhHHHHHHHHH
Q 028985 102 LDMVEGVGNEK-IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG---------------------IDPSSCLGIVEHVR 159 (200)
Q Consensus 102 ~~~~~sv~s~~-~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G---------------------~~~e~~~~~~~~i~ 159 (200)
=.+.+.+++.+ .++.|.++.++.|. ..+|.|-+|.. .+..- +.++|+.+++..+.
T Consensus 70 GGfaP~~~~~eeaL~ll~~Ai~~aGy-~~~v~ialD~A--Asefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 70 GGFAPNIDDNEEALDLLMEAIKEAGY-EPDVAIALDVA--ASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp SSB--SBSSHHHHHHHHHHHHHHTT--TTTBEEEEE----GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHccc-cceeeeecccc--HHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 46778888875 45778888888897 77999999986 33211 34578888877664
Q ss_pred hcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHH
Q 028985 160 LRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFR 193 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~ 193 (200)
+++| +. +---|.+++ ..+.|.++...+.
T Consensus 147 ~~YP---Iv--sIEDpf~ed-D~e~w~~lt~~~g 174 (295)
T PF00113_consen 147 KKYP---IV--SIEDPFDED-DWEGWAKLTKRLG 174 (295)
T ss_dssp HHS----EE--EEESSS-TT--HHHHHHHHHHHT
T ss_pred HhcC---eE--EEEcccccc-chHHHHHHHHhhh
Confidence 4888 21 222333333 2567887777655
No 137
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.38 E-value=4.7e+02 Score=21.22 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=12.6
Q ss_pred HHHHHhcCC-eeeeccHHHHHHHhc
Q 028985 50 RQVYDAGHR-SFGENYVQEIVDKAP 73 (200)
Q Consensus 50 ~~~~~~G~~-~fgva~v~Ea~~lr~ 73 (200)
+.....|.. ..|+.+++|+..-.+
T Consensus 98 ~~~~~~~~~~~~G~~t~~E~~~A~~ 122 (206)
T PRK09140 98 RRAVALGMVVMPGVATPTEAFAALR 122 (206)
T ss_pred HHHHHCCCcEEcccCCHHHHHHHHH
Confidence 444445544 456666666554433
No 138
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=20.28 E-value=5.3e+02 Score=21.70 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=57.8
Q ss_pred CcEEEEEecc----CC-------HHHH-HHHHHhcCCeeee--------ccHHHHHHHhcCCCCCc-cccccCCCChHHH
Q 028985 34 QIRVVAVSKT----KP-------VSLI-RQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDI-KWHFVGHLQSNKA 92 (200)
Q Consensus 34 ~v~l~aVvKa----hg-------~~~i-~~~~~~G~~~fgv--------a~v~Ea~~lr~~~~~~i-~~~~iG~~~~~~~ 92 (200)
++.+++=+|. .| ...+ +...++|++.+.+ ..++.....++....|+ .--|+ +.+.++
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi--~~~~qi 126 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFI--IDPYQI 126 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeec--CCHHHH
Confidence 4678888885 22 1344 5566889999999 88888888777644453 11232 223334
Q ss_pred HhHhccCCCccEEE---eeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC
Q 028985 93 KTLLGGVPNLDMVE---GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (200)
Q Consensus 93 ~~~~~~~~~~~~~~---sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG 138 (200)
..+.+ -..+.+. +.-+.+.++.+-+.++..|. .+++++.+-
T Consensus 127 ~~a~~--~GAD~VlLi~~~l~~~~l~~li~~a~~lGl---~~lvevh~~ 170 (260)
T PRK00278 127 YEARA--AGADAILLIVAALDDEQLKELLDYAHSLGL---DVLVEVHDE 170 (260)
T ss_pred HHHHH--cCCCEEEEEeccCCHHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 44432 1245544 33345678888888887664 455555443
Done!