Query 028985
Match_columns 200
No_of_seqs 149 out of 1049
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r79_A Uncharacterized protein 100.0 1.6E-44 5.4E-49 302.9 17.9 181 9-195 5-188 (244)
2 3sy1_A UPF0001 protein YGGS; e 100.0 1E-43 3.6E-48 298.2 18.0 182 8-194 3-190 (245)
3 1ct5_A Protein (yeast hypothet 100.0 8.7E-42 3E-46 288.1 21.6 186 4-192 8-205 (256)
4 3cpg_A Uncharacterized protein 100.0 3.7E-35 1.3E-39 250.2 21.7 179 9-192 24-225 (282)
5 3e5p_A Alanine racemase; ALR, 100.0 8.5E-31 2.9E-35 231.4 16.4 168 11-191 12-194 (371)
6 3mub_A Alanine racemase; alpha 100.0 6.5E-31 2.2E-35 231.8 15.4 168 11-194 12-193 (367)
7 3kw3_A Alanine racemase; niaid 100.0 1.9E-31 6.3E-36 236.0 11.9 169 10-192 23-205 (376)
8 4a3q_A Alanine racemase 1; iso 100.0 1.3E-30 4.4E-35 231.1 16.9 166 12-191 13-192 (382)
9 3hur_A Alanine racemase; struc 100.0 6.2E-30 2.1E-34 227.5 16.5 151 11-179 13-171 (395)
10 4ecl_A Serine racemase, vantg; 100.0 8.2E-30 2.8E-34 225.2 16.6 169 11-197 10-194 (374)
11 2vd8_A Alanine racemase; pyrid 100.0 4E-29 1.4E-33 221.4 19.9 172 12-197 16-201 (391)
12 1vfs_A Alanine racemase; TIM-b 100.0 8.5E-29 2.9E-33 218.8 18.2 172 12-197 12-199 (386)
13 1bd0_A Alanine racemase; isome 100.0 1.4E-28 4.8E-33 217.9 19.5 153 12-179 12-172 (388)
14 1xfc_A Alanine racemase; alpha 100.0 1.9E-28 6.5E-33 216.3 18.6 172 12-197 16-203 (384)
15 1rcq_A Catabolic alanine racem 100.0 1E-27 3.4E-32 209.7 17.1 150 13-179 9-164 (357)
16 3co8_A Alanine racemase; prote 100.0 1.2E-27 4.2E-32 211.1 17.1 152 12-179 14-173 (380)
17 2rjg_A Alanine racemase; alpha 100.0 1.4E-27 4.7E-32 210.9 15.6 152 12-179 28-185 (379)
18 2dy3_A Alanine racemase; alpha 99.9 7.3E-27 2.5E-31 204.4 16.5 168 13-197 9-189 (361)
19 3gwq_A D-serine deaminase; str 99.9 3.9E-27 1.3E-31 211.2 14.5 173 13-192 52-231 (426)
20 3llx_A Predicted amino acid al 99.9 1.5E-27 5E-32 210.3 10.7 172 12-196 19-207 (376)
21 3anu_A D-serine dehydratase; P 99.9 4.3E-26 1.5E-30 200.1 10.6 176 13-197 18-212 (376)
22 2p3e_A Diaminopimelate decarbo 99.9 1.5E-24 5.2E-29 193.0 18.6 171 12-196 39-233 (420)
23 2qgh_A Diaminopimelate decarbo 99.9 2.2E-22 7.5E-27 179.8 20.2 175 13-197 39-235 (425)
24 1twi_A Diaminopimelate decarbo 99.9 4.3E-22 1.5E-26 178.0 21.4 163 6-178 36-215 (434)
25 2j66_A BTRK, decarboxylase; bu 99.9 2.5E-21 8.6E-26 172.7 19.0 154 13-178 23-192 (428)
26 2nva_A Arginine decarboxylase, 99.8 3.2E-20 1.1E-24 162.8 17.3 165 13-197 23-206 (372)
27 2o0t_A Diaminopimelate decarbo 99.8 3.6E-20 1.2E-24 167.5 15.9 155 13-177 48-219 (467)
28 2plj_A Lysine/ornithine decarb 99.8 7.4E-20 2.5E-24 163.4 16.3 167 13-197 61-244 (419)
29 3n2b_A Diaminopimelate decarbo 99.8 7.8E-19 2.7E-23 157.9 19.8 155 13-178 58-229 (441)
30 3vab_A Diaminopimelate decarbo 99.8 7.5E-19 2.6E-23 158.1 19.4 154 13-177 55-225 (443)
31 2yxx_A Diaminopimelate decarbo 99.8 3.1E-20 1.1E-24 163.6 9.6 150 13-179 19-185 (386)
32 1f3t_A ODC, ornithine decarbox 99.8 2.3E-18 7.8E-23 153.9 18.9 168 13-197 44-227 (425)
33 2oo0_A ODC, ornithine decarbox 99.8 7.2E-17 2.5E-21 146.2 19.9 168 13-197 54-237 (471)
34 3btn_A Antizyme inhibitor 1; T 99.8 4.3E-17 1.5E-21 146.7 18.1 168 13-197 44-227 (448)
35 1knw_A Diaminopimelate decarbo 99.7 8.1E-18 2.8E-22 150.3 11.4 150 13-179 32-197 (425)
36 7odc_A Protein (ornithine deca 99.7 4.4E-16 1.5E-20 139.2 17.9 167 13-197 44-227 (424)
37 3nzp_A Arginine decarboxylase; 99.5 1.2E-12 4E-17 122.1 20.7 166 7-177 52-237 (619)
38 3nzq_A ADC, biosynthetic argin 99.5 1.6E-12 5.5E-17 122.0 20.4 167 6-177 92-276 (666)
39 3n2o_A ADC, biosynthetic argin 99.4 8E-12 2.7E-16 116.9 18.7 167 6-177 70-259 (648)
40 3mt1_A Putative carboxynorsper 99.3 1.1E-12 3.7E-17 115.0 6.4 160 7-191 11-179 (365)
41 3n29_A Carboxynorspermidine de 99.2 1E-11 3.5E-16 110.9 6.1 154 8-192 52-219 (418)
42 1zud_1 Adenylyltransferase THI 54.7 34 0.0011 27.4 6.8 80 44-126 39-144 (251)
43 2nly_A BH1492 protein, diverge 54.2 85 0.0029 25.3 9.1 93 102-197 28-129 (245)
44 4a29_A Engineered retro-aldol 42.3 86 0.003 25.7 7.3 103 34-141 45-166 (258)
45 2qv5_A AGR_C_5032P, uncharacte 41.6 1.4E+02 0.0048 24.2 9.3 81 114-197 68-156 (261)
46 3o63_A Probable thiamine-phosp 40.7 92 0.0032 24.9 7.3 27 37-64 137-163 (243)
47 3epw_A IAG-nucleoside hydrolas 40.5 90 0.0031 26.2 7.5 59 124-194 10-70 (338)
48 3tsm_A IGPS, indole-3-glycerol 39.1 1.6E+02 0.0054 24.1 10.2 96 35-137 59-178 (272)
49 3ble_A Citramalate synthase fr 35.7 1.9E+02 0.0065 24.0 10.6 125 33-173 88-221 (337)
50 1nvm_A HOA, 4-hydroxy-2-oxoval 31.9 1.5E+02 0.0052 24.7 7.6 40 112-159 120-159 (345)
51 4g9p_A 4-hydroxy-3-methylbut-2 31.3 69 0.0024 28.0 5.3 102 34-138 25-147 (406)
52 3noy_A 4-hydroxy-3-methylbut-2 27.6 2.4E+02 0.0082 24.3 8.0 146 34-191 31-202 (366)
53 1yoe_A Hypothetical protein YB 25.6 2.8E+02 0.0097 22.8 8.3 43 124-178 10-52 (322)
54 1tqj_A Ribulose-phosphate 3-ep 25.0 2.3E+02 0.0078 22.1 7.1 128 47-193 21-168 (230)
55 1vyr_A Pentaerythritol tetrani 23.4 2E+02 0.0068 24.2 6.8 94 10-106 207-321 (364)
56 3tsm_A IGPS, indole-3-glycerol 23.2 97 0.0033 25.3 4.6 26 38-63 171-196 (272)
57 1jw9_B Molybdopterin biosynthe 22.5 2.8E+02 0.0096 21.7 7.4 80 44-126 42-147 (249)
58 1x7f_A Outer surface protein; 22.1 47 0.0016 28.9 2.5 68 128-198 15-89 (385)
59 1q8f_A Pyrimidine nucleoside h 21.7 3.3E+02 0.011 22.3 7.9 29 148-178 14-42 (313)
60 1pii_A N-(5'phosphoribosyl)ant 21.0 3.5E+02 0.012 23.8 8.0 100 34-140 47-169 (452)
61 1g6u_A Domain swapped dimer; d 21.0 57 0.0019 19.0 1.9 17 142-158 13-29 (48)
62 2qgq_A Protein TM_1862; alpha- 20.9 3.3E+02 0.011 21.9 7.5 64 130-196 116-184 (304)
63 2c40_A Inosine-uridine preferr 20.5 2.9E+02 0.01 22.5 7.1 45 148-194 12-57 (312)
64 2mas_A Inosine-uridine nucleos 20.4 3.5E+02 0.012 22.1 7.6 45 148-194 12-57 (314)
65 1h1y_A D-ribulose-5-phosphate 20.4 2.1E+02 0.0072 22.0 6.0 78 47-126 23-114 (228)
66 3fz0_A Nucleoside hydrolase, p 20.3 3.4E+02 0.012 23.0 7.6 39 129-178 7-45 (360)
No 1
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.6e-44 Score=302.92 Aligned_cols=181 Identities=39% Similarity=0.526 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCC---CCccccccC
Q 028985 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP---EDIKWHFVG 85 (200)
Q Consensus 9 ~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~---~~i~~~~iG 85 (200)
.|..||..|+++|+.+|+.+||+|++++|+||||+||++.+++++++|+++||||++|||++||+.+. .+|.||+||
T Consensus 5 ~i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG 84 (244)
T 3r79_A 5 EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIG 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecC
Confidence 48899999999999999999998889999999999999888889999999999999999999999854 268999999
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCe
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 165 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l 165 (200)
++|+|+++.++ +.+++++||||+++++.|++.|.+.|+ +++||||||||+||+|+||.|+++.++++.+. .+|+|
T Consensus 85 ~lq~nk~~~~v---~~~~~i~sVds~~~a~~L~~~a~~~g~-~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L 159 (244)
T 3r79_A 85 PLQSNKAADAV---ALFDVVESIDREKIARALSEECARQGR-SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKL 159 (244)
T ss_dssp CCCGGGHHHHH---HHCSEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCC
T ss_pred CCCHHHHHHHH---HHCCEEEeeCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCC
Confidence 99999999998 358999999999999999999999998 99999999999999999999999999999998 99999
Q ss_pred EEeEEEeecCCCCCCchHHHHHHHHHHHhc
Q 028985 166 EFSGLMTIGMPDYTSTPENFRVMDFSFRRA 195 (200)
Q Consensus 166 ~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~ 195 (200)
+++|||||||+++++. ..|+.+.++++..
T Consensus 160 ~l~GlmTh~a~~dd~~-~~f~~l~~l~~~l 188 (244)
T 3r79_A 160 PVEGLMCIPPAEENPG-PHFALLAKLAGQC 188 (244)
T ss_dssp CCCEEECCCCTTSCSH-HHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCHH-HHHHHHHHHHHhC
Confidence 9999999999988754 7788888877653
No 2
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=1e-43 Score=298.17 Aligned_cols=182 Identities=38% Similarity=0.538 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCC----Cccccc
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE----DIKWHF 83 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~----~i~~~~ 83 (200)
..|.+||+.|+++|..+++.+||++++++|+||||+||++.+++++++|+++||||++|||++||+.+.. +|.||+
T Consensus 3 ~~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~ 82 (245)
T 3sy1_A 3 NDIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNF 82 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEee
Confidence 4689999999999999999999988899999999999998888899999999999999999999998543 689999
Q ss_pred cCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCC
Q 028985 84 VGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 163 (200)
Q Consensus 84 iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~ 163 (200)
||++|+|+++.++ +.++++++|||+++++.|++.|.+.|+ +++||||||||+||+|+||.|+++.++++.+. ++|
T Consensus 83 iG~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~ 157 (245)
T 3sy1_A 83 AGPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRPAELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELP 157 (245)
T ss_dssp CSCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSCTTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCT
T ss_pred cCCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCC
Confidence 9999999999998 358999999999999999999999998 99999999999999999999999999999998 999
Q ss_pred CeEEeEEEeecCCCCCC--chHHHHHHHHHHHh
Q 028985 164 NLEFSGLMTIGMPDYTS--TPENFRVMDFSFRR 194 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~~--~~~~F~~l~~~~~~ 194 (200)
+|++.|||||++..+++ .+..|+.+.+++++
T Consensus 158 ~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~ 190 (245)
T 3sy1_A 158 RLRLRGLSAIPAPESEYVRQFEVARQMAVAFAG 190 (245)
T ss_dssp TEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998763 56789888887654
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=8.7e-42 Score=288.08 Aligned_cols=186 Identities=36% Similarity=0.558 Sum_probs=155.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCCCccc
Q 028985 4 PTVEGAAVTALRSVLHRVRQAAERSGRT--QEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKW 81 (200)
Q Consensus 4 ~~~~~~l~~nl~~i~~ni~~~~~~~~r~--~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~ 81 (200)
|..+..|.+||+.|++||+.+++.++|+ +++++|+||||+||++.++.++++|+++||||++|||++||+.++.++.|
T Consensus 8 ~~~~~~i~~nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~ 87 (256)
T 1ct5_A 8 EDRKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKW 87 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHHHHHHcCCCEEEEEcHHHHHHHHHhcccCeeE
Confidence 4445569999999999999999999986 67899999999999988878999999999999999999999986657999
Q ss_pred cccCCCChHHHHhH--hccCCCccEEEeeCcHHHHHHHHHHHHhcCCC--CeeEEEEEeCCCCCCcCCCCh-hhHHHHHH
Q 028985 82 HFVGHLQSNKAKTL--LGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK--PLKVLVQVNTSGEESKSGIDP-SSCLGIVE 156 (200)
Q Consensus 82 ~~iG~~~~~~~~~~--~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~--~~~v~lkvdtG~em~R~G~~~-e~~~~~~~ 156 (200)
|+||++|+|+++.+ + ..++++++|||+++++.|++.+.+.|+. +++||||||||+||+|+||.| +++.++++
T Consensus 88 h~iG~lq~nk~~~~~~~---~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~ 164 (256)
T 1ct5_A 88 HFIGGLQTNKCKDLAKV---PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVID 164 (256)
T ss_dssp EECSCCCGGGHHHHHHC---TTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHhcc---cccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHHHHHH
Confidence 99999999999999 6 3589999999999999999999887721 699999999999999999999 99999999
Q ss_pred HHH-hcCCCeEEeEEEeec--CCCCCC--chHHHHHHHHHH
Q 028985 157 HVR-LRCPNLEFSGLMTIG--MPDYTS--TPENFRVMDFSF 192 (200)
Q Consensus 157 ~i~-~~~~~l~~~GlmTh~--a~~~~~--~~~~F~~l~~~~ 192 (200)
.+. ..+|+|+++|||||+ ++++++ +...|+.+.+++
T Consensus 165 ~i~~~~~~~L~l~Glmth~~~~~ad~~~~~~~~f~~~~~~~ 205 (256)
T 1ct5_A 165 FFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWK 205 (256)
T ss_dssp HHHSTTCCSEEEEEEECCCCCC---------HHHHHHHHHH
T ss_pred HHHHccCCCeeEEEEEEECCcCCCCCHHHHHHHHHHHHHHH
Confidence 983 178999999999999 876642 455676666443
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=3.7e-35 Score=250.21 Aligned_cols=179 Identities=35% Similarity=0.540 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCC-------------
Q 028985 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQL------------- 75 (200)
Q Consensus 9 ~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~------------- 75 (200)
.+..||++|++|++.+++.+++.+.++++++|||+||+..+..++++|+++||||+++||..+|+.+
T Consensus 24 ~l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~ 103 (282)
T 3cpg_A 24 EITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHHHHCCCCEEEEEeHHHHHHHHHhhhhhcccccccccc
Confidence 5899999999999999999987667899999999999988744588999999999999999999872
Q ss_pred --------CCCccccccCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCC
Q 028985 76 --------PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID 147 (200)
Q Consensus 76 --------~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~ 147 (200)
+..|.|+++|++|+++++.++ +.++++++|||+++++.|++.|.+.|+ +++|||+||||.|.+|+||.
T Consensus 104 ~G~~~d~~~~~i~~~~iG~~~~~~~~~~~---~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~lkVdtGme~~R~G~~ 179 (282)
T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAEKISRRAVARGI-TVGVLLEVNESGEESKSGCD 179 (282)
T ss_dssp C------CCEEECEEECSCCCGGGHHHHT---TTCSEEEEECCHHHHHHHHHHHHHHTC-CEEEEEEBCCSSCTTSSSBC
T ss_pred ccccccccccceeeeecChhHHHHHHHHH---HhCCEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCcC
Confidence 224889999999999999998 358999999999999999999988887 99999999999222999999
Q ss_pred hhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCC--chHHHHHHHHHH
Q 028985 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TPENFRVMDFSF 192 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~--~~~~F~~l~~~~ 192 (200)
|+++.++++.+. .+|+|++.|||||+++++++ +...|+++.++.
T Consensus 180 ~ee~~~l~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~l~~~~ 225 (282)
T 3cpg_A 180 PAHAIRIAQKIG-TLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTR 225 (282)
T ss_dssp GGGHHHHHHHHH-TCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCCceEEeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 99999999999999987752 234555555543
No 5
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.97 E-value=8.5e-31 Score=231.40 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++ +++++++|+|+ ||+..+ +.+.++|+++|+|++++||+.+|++ ++.+| +++
T Consensus 12 ~Idl~al~~N~~~l~~~~~---~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~I--lvl 86 (371)
T 3e5p_A 12 HIDTQAITENVQKECQRLP---EGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPI--LIL 86 (371)
T ss_dssp EECHHHHHHHHHHHHHSSC---SSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCE--EEE
T ss_pred EEEHHHHHHHHHHHHHhcC---CCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCCE--EEE
Confidence 4578888888888887774 36899999999 999887 7788999999999999999999998 55566 566
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHH-HHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcC
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRC 162 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l-~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~ 162 (200)
|+.++++++.+++ ++++++|+|+++++.| ++.|.+.|+ +++|||||||| |+|+||.+ +++.++++.+. ++
T Consensus 87 g~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~~a~~~~~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i~-~~ 158 (371)
T 3e5p_A 87 SVVDLAYVPLLIQ----YDLSVTVATQEWLEAALQQLTPESNT-PLRVHLKVDTG--MGRIGFLTPEETKQAVRFVQ-SH 158 (371)
T ss_dssp EECCGGGHHHHHH----HTCEEEECCHHHHHHHHHHHCSCCSC-CBCEEEEBCSS--SCSSSBCSSHHHHHHHHHHH-HS
T ss_pred cCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHHcCC-ceEEEEEECCC--CCcCCCCCHHHHHHHHHHHH-hC
Confidence 9999999999984 7899999999999999 999988897 99999999999 99999999 99999999998 99
Q ss_pred CCeEEeEEEeecCCCCCC-------chHHHHHHHHH
Q 028985 163 PNLEFSGLMTIGMPDYTS-------TPENFRVMDFS 191 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~~-------~~~~F~~l~~~ 191 (200)
|+|++.|+||||+++|++ |.+.|.++.+.
T Consensus 159 ~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~ 194 (371)
T 3e5p_A 159 KEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAV 194 (371)
T ss_dssp TTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSS
T ss_pred CCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999997763 44555554443
No 6
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.97 E-value=6.5e-31 Score=231.84 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++ +++++++|+|+ ||+..+ +.+.++ +++|||++++||+.+|++ ++.+| +++
T Consensus 12 ~Idl~al~~N~~~l~~~~~---~~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G~~~~i--lvl 85 (367)
T 3mub_A 12 LIHLGAIRQNIQQMGAHIP---QGTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAGLSKPI--LIL 85 (367)
T ss_dssp EECHHHHHHHHHHHHHTSC---TTCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTTCCSCE--EEE
T ss_pred EEeHHHHHHHHHHHHHhCC---CCCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcCCCCCE--EEE
Confidence 4578888888888887774 46899999999 999887 667788 999999999999999998 55566 566
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCC
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCP 163 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~ 163 (200)
|++++++++.+++ ++++++|+|.++++.|++.+.+. + +++|||||||| |+|+||.+ +++.++++.+. + |
T Consensus 86 g~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~a~~~-~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i~-~-~ 155 (367)
T 3mub_A 86 GVSEIEAVALAKE----YDFTLTVAGLEWIQALLDKEVDL-T-GLTVHLKIDSG--MGRIGFREASEVEQAQDLLQ-Q-H 155 (367)
T ss_dssp EECCGGGHHHHHH----TTEEEEECCHHHHHHHHHTTCCC-T-TCEEEEEECSS--CCSSSBCSHHHHHHHHHHHH-H-T
T ss_pred cCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhc-C-CeeEEEEECCC--CCcCCCCcHHHHHHHHHHHc-c-C
Confidence 9899999999984 78999999999999999998776 7 99999999999 99999999 99999999998 8 9
Q ss_pred CeEEeEEEeecCCCCCC-------chHHHHHHHHHHHh
Q 028985 164 NLEFSGLMTIGMPDYTS-------TPENFRVMDFSFRR 194 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~~-------~~~~F~~l~~~~~~ 194 (200)
+|++.|+||||+++|++ |.+.|.++.+.++.
T Consensus 156 ~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~ 193 (367)
T 3mub_A 156 GVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKE 193 (367)
T ss_dssp TCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSS
T ss_pred CcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999987652 66778877775543
No 7
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.97 E-value=1.9e-31 Score=236.01 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCC--CCCcccc
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQL--PEDIKWH 82 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~--~~~i~~~ 82 (200)
+..|+++|++|++.+++.++ ++++++|+|+ ||+.++ +.+.++|+++|||++++||+.+|++. +.+| +
T Consensus 23 ~~Idl~al~~N~~~l~~~~~----~~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~~i--l 96 (376)
T 3kw3_A 23 ATIDVRAIVANYRTLAQHVA----PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMI--A 96 (376)
T ss_dssp EEECHHHHHHHHHHHHHHHT----TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEE--E
T ss_pred EEEcHHHHHHHHHHHHHhCC----CCEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCCCE--E
Confidence 45678888888888888774 3899999998 999776 78889999999999999999999874 3345 6
Q ss_pred ccCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcC
Q 028985 83 FVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (200)
Q Consensus 83 ~iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~ 162 (200)
++|++++++++.+++ ++++++|+|+++++.|++.|.+.++ +++|||||||| |+|+||.|+++.++++.+. ++
T Consensus 97 vl~~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~~-~~~V~lkVdtG--m~R~G~~~~e~~~l~~~i~-~~ 168 (376)
T 3kw3_A 97 LLNGFPHKAEEFVAQ----SGIIPLLNSWSTIEDWQTLCQKKNK-KFPAIIQVDTN--MSRLGLDKKELQKLIKNPT-IF 168 (376)
T ss_dssp ETTCCCTTCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--CCSSSBCHHHHHHHHHCCT-HH
T ss_pred EEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHcCC-CeEEEEEECCC--CCcccCCHHHHHHHHHHHH-hC
Confidence 778889999998883 7899999999999999999998897 99999999999 9999999999999999887 88
Q ss_pred CCeEEeEEEeecCCCCCC-------chHHHHHHHHHH
Q 028985 163 PNLEFSGLMTIGMPDYTS-------TPENFRVMDFSF 192 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~~-------~~~~F~~l~~~~ 192 (200)
|+|++.|+||||+++|++ |.+.|.++.+.+
T Consensus 169 ~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l 205 (376)
T 3kw3_A 169 EKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQL 205 (376)
T ss_dssp HHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999997752 566677666543
No 8
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.97 E-value=1.3e-30 Score=231.06 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVG 85 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG 85 (200)
.|+++|++|++ +++.++ +++++++|+|+ ||+.++ +++.++|+++|||++++||+.+|++ ++.+| +++|
T Consensus 13 Idl~al~~N~~-l~~~~~---~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~~i--lvlg 86 (382)
T 4a3q_A 13 VDLNAVASNFK-VFSTLH---PNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKI--LVLG 86 (382)
T ss_dssp EEHHHHHHHHH-HHHHHC---TTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEE--EECS
T ss_pred EEHHHHHHHHH-HHhhcC---CCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCCCE--EEEe
Confidence 46777777777 776664 46899999999 999887 7788999999999999999999998 54555 5569
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCC-CeeEEEEEeCCCCCCcCCCChhh-HHHHHHHHHhcCC
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK-PLKVLVQVNTSGEESKSGIDPSS-CLGIVEHVRLRCP 163 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~-~~~v~lkvdtG~em~R~G~~~e~-~~~~~~~i~~~~~ 163 (200)
++++++++.+++ ++++++|+|.++++.|++.|.+.| + +++|||||||| |+|+||.|++ +.++++.+. ++|
T Consensus 87 ~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~-~~~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i~-~~~ 158 (382)
T 4a3q_A 87 VLPAKDIDKAIQ----HRVALTVPSKQWLKEAIKNISGEQ-EKKLWLHIKLDTG--MGRLGIKDTNTYQEVIEIIQ-QYE 158 (382)
T ss_dssp CCCGGGHHHHHH----TTCBEEECCHHHHHHHHHTCCTTC-CSCEEEEEEBCSS--SSSSSBCCHHHHHHHHHHHH-HCT
T ss_pred CCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcC-CCceeEEEEECCC--CCcCCCChHHHHHHHHHHHH-hCC
Confidence 999999999984 789999999999999999988777 4 79999999999 9999999976 999999998 999
Q ss_pred CeEEeEEEeecCCCCCC------chHHHHHHHHH
Q 028985 164 NLEFSGLMTIGMPDYTS------TPENFRVMDFS 191 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~~------~~~~F~~l~~~ 191 (200)
+|++.|+||||+++|++ |.+.|.++.+.
T Consensus 159 ~l~l~Gl~tH~a~ad~~~~~~~~Q~~~F~~~~~~ 192 (382)
T 4a3q_A 159 QLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNE 192 (382)
T ss_dssp TEEEEEEECCC-------CHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEECcCCCCCCchHHHHHHHHHHHHHh
Confidence 99999999999997752 45666665543
No 9
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.97 E-value=6.2e-30 Score=227.50 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHh-cCCeeeeccHHHHHHHhcC-CCCCccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDA-GHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~-G~~~fgva~v~Ea~~lr~~-~~~~i~~~~ 83 (200)
..|+++|++|++.+++.. ++++++||||+ ||+.++ +++.++ |+++||||+++||+++|++ ++.+| ++
T Consensus 13 ~Idl~al~~N~~~l~~~~----~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~~I--lv 86 (395)
T 3hur_A 13 SVDLDAAAHNLQEIREWT----KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLPI--WV 86 (395)
T ss_dssp EEEHHHHHHHHHHHHHHH----TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSCE--EE
T ss_pred EEeHHHHHHHHHHHHhcC----CCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCCCE--EE
Confidence 456777777777777662 47899999998 999776 788899 9999999999999999998 55566 66
Q ss_pred cCCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhh-HHHHHHHHHhcC
Q 028985 84 VGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS-CLGIVEHVRLRC 162 (200)
Q Consensus 84 iG~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~-~~~~~~~i~~~~ 162 (200)
+|++++++++.+++ ++++++|+|.+++++|++. . | +++|||||||| |+|+||.|++ +.++++.+. ++
T Consensus 87 lg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~-~--~--~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i~-~~ 154 (395)
T 3hur_A 87 LGAWDYSDLKLFID----HDIVITIPSLAWLQNLPDF-E--G--TLKVSLAIDTG--MTRIGFDKADEISAAKKIID-KN 154 (395)
T ss_dssp SSCCCGGGHHHHHH----TTEEEEECCHHHHHTCCCC-S--S--CEEEEEEBCCS--SCSSSBCCHHHHHHHHHHHH-HC
T ss_pred EcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh-c--C--CCcEEEEEcCC--CCCcCCChHHHHHHHHHHHH-hC
Confidence 79999999999984 7999999999999999877 3 4 79999999999 9999999986 999999998 99
Q ss_pred CCeEEeEEEeecCCCCC
Q 028985 163 PNLEFSGLMTIGMPDYT 179 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~ 179 (200)
|+|+++|+||||+++|+
T Consensus 155 ~~l~l~Gl~TH~a~ad~ 171 (395)
T 3hur_A 155 PQLDLFSVYTHFATADE 171 (395)
T ss_dssp TTEEEEEEECCCTTTTS
T ss_pred CCceEEEEEEeCcCCCC
Confidence 99999999999999876
No 10
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.97 E-value=8.2e-30 Score=225.23 Aligned_cols=169 Identities=14% Similarity=0.177 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 11 ~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
..|+++|++|++.+++.++ +++++++|+|+ ||+..+ +.+.++|+++|+|++++||+.+|+. ++.+| +++
T Consensus 10 ~Idl~al~~N~~~l~~~~~---~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~i--lvl 84 (374)
T 4ecl_A 10 EINLNNLEHNVNTLQKAMS---PKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSEI--LIL 84 (374)
T ss_dssp EECHHHHHHHHHHHHHTSC---TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEE--EEC
T ss_pred EEcHHHHHHHHHHHHHhcC---CCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCCE--EEE
Confidence 3577888888888877763 47899999999 999887 7788999999999999999999998 44455 456
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~ 164 (200)
|++++++++.+++ ++++++|+|++++++|++. |+ +++|||+|||| |+|+||. +++.++++.+. ++|+
T Consensus 85 g~~~~~~~~~~~~----~~i~~~v~s~~~l~~l~~~----~~-~~~v~lkvdtG--m~R~G~~-~e~~~~~~~i~-~~~~ 151 (374)
T 4ecl_A 85 GYTSPSRAKELCK----YELTQTLIDYRYSLLLNKQ----GY-DIKAHIKIDTG--MHRLGFS-TEDKDKILAAF-SLKH 151 (374)
T ss_dssp SCCCGGGHHHHHH----TTCEEEECCHHHHHHHHTT----CC-CEEEEEEEESS--SCSSSEE-SSCHHHHHHHT-TCTT
T ss_pred eCCCHHHHHHHHH----CCCEEEECCHHHHHHHHhc----CC-CccEEEEEcCC--CCcCccC-HHHHHHHHHHH-hCCC
Confidence 9999999999994 7899999999999999887 76 99999999999 9999999 89999999998 9999
Q ss_pred eEEeEEEeecCCCCC----------CchHHHHHHHHHHHhccc
Q 028985 165 LEFSGLMTIGMPDYT----------STPENFRVMDFSFRRAHV 197 (200)
Q Consensus 165 l~~~GlmTh~a~~~~----------~~~~~F~~l~~~~~~~~~ 197 (200)
|++.|+||||+++++ +|.+.|.++.+.+++.++
T Consensus 152 l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~~g~ 194 (374)
T 4ecl_A 152 IKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKSSGL 194 (374)
T ss_dssp EEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999998765 155778888887776654
No 11
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.97 E-value=4e-29 Score=221.37 Aligned_cols=172 Identities=13% Similarity=0.137 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVG 85 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG 85 (200)
.|+++|++|++.+++.++ +++++++|+|+ ||...+ +.+.++|+++|+|++++||..+|++ ++.+| .++|
T Consensus 16 idl~ai~~N~~~l~~~~~---~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~i--l~~g 90 (391)
T 2vd8_A 16 VDLDAIYNNVTHIXEFIP---SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPI--LVLG 90 (391)
T ss_dssp EEHHHHHHHHHHHHHHSC---TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCE--EECS
T ss_pred EcHHHHHHHHHHHHHhcC---CCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCce--EEec
Confidence 456677777777766653 36899999999 999887 6678999999999999999999998 66666 3559
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCCC
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPN 164 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~~ 164 (200)
+.++++++.+++ ++++++|+|.++++.|++ +.+.++ +++|||+|||| |+|.||.+ +++.++++.+. ++|+
T Consensus 91 ~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a~~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i~-~~~~ 161 (391)
T 2vd8_A 91 PSPPRDINVAAE----NDVALTVFQXEWVDEAIX-LWDGSS-TMXYHINFDSG--MGRIGIRERXELXGFLXSLE-GAPF 161 (391)
T ss_dssp CCCGGGHHHHHH----TTEEEECCCHHHHHHHHH-HCCSSC-CEEEEEEBCSS--CCSSSBCCHHHHHHHHHHHT-TCTT
T ss_pred CCChHHHHHHHH----CCeEEEEcCHHHHHHHHH-HHhcCC-ceEEEEEEeCC--CCCCCCCchhhHHHHHHHHh-hcCC
Confidence 899999999994 789999999999999999 877887 99999999999 99999996 89999999998 9999
Q ss_pred eEEeEEEeecCCCCC--C-----chHHHHHHHHHHHhccc
Q 028985 165 LEFSGLMTIGMPDYT--S-----TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 165 l~~~GlmTh~a~~~~--~-----~~~~F~~l~~~~~~~~~ 197 (200)
|++.|+|||++++++ + |...|.++.+.+++.++
T Consensus 162 l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~~g~ 201 (391)
T 2vd8_A 162 LELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGV 201 (391)
T ss_dssp EEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999998654 2 45678887777665543
No 12
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.96 E-value=8.5e-29 Score=218.80 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVG 85 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG 85 (200)
.|+++|++|++.+++.+ +++++++|+|+ ||...+ +.+.++|+++|+|++++||..+++. ++.+| .++|
T Consensus 12 idl~~i~~N~~~l~~~~----~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~i--l~~~ 85 (386)
T 1vfs_A 12 IDLDAVRANVRALRARA----PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRI--MCWL 85 (386)
T ss_dssp EEHHHHHHHHHHHHTTS----TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEE--EECC
T ss_pred EeHHHHHHHHHHHHHhC----CCcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE--EEEC
Confidence 46677777777776655 36899999999 999887 6678999999999999999999998 55456 4678
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHH---HHHHHhcC
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGI---VEHVRLRC 162 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~---~~~i~~~~ 162 (200)
++++++++.+++ ++++++|||.++++.|++.|.+.++ +++|||+|||| |+|.||.++++.++ ++.+. ++
T Consensus 86 ~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~e~~~~~~~~~~i~-~~ 157 (386)
T 1vfs_A 86 WTPGGPWREAIE----TDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG--LGRNGCQPADWAELVGAAVAAQ-AE 157 (386)
T ss_dssp CCTTCCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS--CCSSSBCHHHHHHHHHHHHHHH-HT
T ss_pred CCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEcCC--CCCCCCCHhHHHHHHHHHHHHH-hC
Confidence 888899999994 7889999999999999999988887 99999999999 99999999888555 88887 89
Q ss_pred CCeEEeEEEeecCCCCCC-------chHHHHHHHHHHHhccc
Q 028985 163 PNLEFSGLMTIGMPDYTS-------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~~-------~~~~F~~l~~~~~~~~~ 197 (200)
|+|++.|+|||+++.+++ |...|.++.+.+++.+.
T Consensus 158 ~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~~g~ 199 (386)
T 1vfs_A 158 GTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGV 199 (386)
T ss_dssp TSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999986542 34667777766665543
No 13
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.96 E-value=1.4e-28 Score=217.87 Aligned_cols=153 Identities=15% Similarity=0.179 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-EEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCcccccc
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQI-RVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFV 84 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v-~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~i 84 (200)
.|+++|++|++.+++.+ +++ ++++|+|+ ||...+ +.+.++|+++|+|++++||..+|++ ++.+| .++
T Consensus 12 idl~ai~~N~~~l~~~~----~~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~~I--l~~ 85 (388)
T 1bd0_A 12 VDLDAIYDNVENLRRLL----PDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPI--LVL 85 (388)
T ss_dssp EEHHHHHHHHHHHHHHS----CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCE--EEC
T ss_pred EcHHHHHHHHHHHHHhC----CCCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCCCE--EEE
Confidence 46777777777777666 268 99999999 999887 6678999999999999999999998 65566 466
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCC
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCP 163 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~ 163 (200)
|+.++++++.+++ ++++++|+|+++++.|++.| +.++ +++|||+|||| |+|+||.+ +++.++++.+. ++|
T Consensus 86 g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a-~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i~-~~~ 156 (388)
T 1bd0_A 86 GASRPADAALAAQ----QRIALTVFRSDWLEEASALY-SGPF-PIHFHLKMDTG--MGRLGVKDEEETKRIVALIE-RHP 156 (388)
T ss_dssp SCCCGGGHHHHHH----TTEEEEECCHHHHHHHHHHC-CCSS-CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHH-HST
T ss_pred CCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHh-ccCC-CeEEEEEEcCC--CCcCCCCCHHHHHHHHHHHH-hCC
Confidence 9999999999994 78999999999999999998 7887 99999999999 99999997 89999999998 999
Q ss_pred CeEEeEEEeecCCCCC
Q 028985 164 NLEFSGLMTIGMPDYT 179 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~ 179 (200)
+|++.|+|||++++++
T Consensus 157 ~l~l~Gl~tH~~~~~~ 172 (388)
T 1bd0_A 157 HFVLEGLYTHFATADE 172 (388)
T ss_dssp TEEEEEEECCCSSTTS
T ss_pred CceEEEEEEccCCCCC
Confidence 9999999999998765
No 14
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.9e-28 Score=216.30 Aligned_cols=172 Identities=21% Similarity=0.255 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVG 85 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG 85 (200)
.|+++|++|++.+++.++ ++++++|+|+ ||...+ +.+.++|+++|+|++++|+..++++ ++.+| .++|
T Consensus 16 idl~~i~~N~~~l~~~~~----~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~~I--l~~g 89 (384)
T 1xfc_A 16 VDLGAIEHNVRVLREHAG----HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPV--LAWL 89 (384)
T ss_dssp EEHHHHHHHHHHHHHHHT----TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCE--EECC
T ss_pred EeHHHHHHHHHHHHHhCC----CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCE--EEEc
Confidence 467778888887777763 6899999999 999887 6677999999999999999999998 55566 5778
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh---hhHHHHHHHHHhcC
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP---SSCLGIVEHVRLRC 162 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~---e~~~~~~~~i~~~~ 162 (200)
+.+.++++.+++ ++++++|||.++++.|++.+.+.|+ +++|||+|||| |+|.||.+ +++.++++.+. ++
T Consensus 90 ~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~~~~i~-~~ 161 (384)
T 1xfc_A 90 HPPGIDFGPALL----ADVQVAVSSLRQLDELLHAVRRTGR-TATVTVKVDTG--LNRNGVGPAQFPAMLTALRQAM-AE 161 (384)
T ss_dssp CCTTCCCHHHHH----TTCEEEECSHHHHHHHHHHHHHHCC-CEEEEEEBCSS--CCSSSBCTTTHHHHHHHHHHHH-HT
T ss_pred CCCHHHHHHHHH----cCcEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEECC--CCccCCCcCcHHHHHHHHHHHH-hC
Confidence 899999999984 7889999999999999999988887 99999999999 99999999 89999999998 99
Q ss_pred CCeEEeEEEeecCCCCC-C------chHHHHHHHHHHHhccc
Q 028985 163 PNLEFSGLMTIGMPDYT-S------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~-~------~~~~F~~l~~~~~~~~~ 197 (200)
|+|++.|+|||+++.++ + |.+.|.++.+.+++.++
T Consensus 162 ~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 203 (384)
T 1xfc_A 162 DAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGV 203 (384)
T ss_dssp TSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998653 1 44567777666655443
No 15
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.95 E-value=1e-27 Score=209.68 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
|+++|++|++.+++. +++++++|+|+ ||...+ +.+.++ +++|+|++++||..+++. ++.+|. +++|+
T Consensus 9 dl~~l~~N~~~l~~~-----~~~~l~~vvKanaYG~g~~~i~~~l~~~-~~~~~va~~~Ea~~~~~~G~~~~Il-~~~g~ 81 (357)
T 1rcq_A 9 DLQALRHNYRLAREA-----TGARALAVIKADAYGHGAVRCAEALAAE-ADGFAVACIEEGLELREAGIRQPIL-LLEGF 81 (357)
T ss_dssp EHHHHHHHHHHHHHH-----HCSEEEEECHHHHHTTCHHHHHHHHTTT-CSEEEESSHHHHHHHHHTTCCSCEE-ETTCC
T ss_pred eHHHHHHHHHHHHhC-----CCCeEEEEEEeccccCCHHHHHHHHHHh-CCEEEEccHHHHHHHHhCCcCCCEE-EEeCC
Confidence 455666666665544 15799999999 999887 556677 999999999999999998 554663 47799
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.++++++.+++ ++++++|||.++++.|++ + +.|+ +++|||+|||| |+|.||.++++.++++.+. ++|+|+
T Consensus 82 ~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~i~-~~~~l~ 151 (357)
T 1rcq_A 82 FEASELELIVA----HDFWCVVHCAWQLEAIER-A-SLAR-PLNVWLKMDSG--MHRVGFFPEDFRAAHERLR-ASGKVA 151 (357)
T ss_dssp SSGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CEEEEEEBCSS--SCSSSBCHHHHHHHHHHHH-HTTCEE
T ss_pred CCHHHHHHHHH----cCCEEEECCHHHHHHHHh-h-ccCC-CeEEEEEEcCC--CCCCCCCHHHHHHHHHHHH-hCCCCc
Confidence 99999999994 689999999999999999 7 7887 99999999999 9999999999999999998 999999
Q ss_pred EeEEEeecCCCCC
Q 028985 167 FSGLMTIGMPDYT 179 (200)
Q Consensus 167 ~~GlmTh~a~~~~ 179 (200)
+.|+|||+++.++
T Consensus 152 l~Gl~th~~~~~~ 164 (357)
T 1rcq_A 152 KIVMMSHFSRADE 164 (357)
T ss_dssp EEEEECCCSSTTC
T ss_pred EEEEEEcccCCCC
Confidence 9999999998764
No 16
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.95 E-value=1.2e-27 Score=211.12 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVG 85 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG 85 (200)
.|+++|++|++.+++.+ +++++++|+|+ ||...+ +.+.++|+++|+|++++||..++++ ++.+| .++|
T Consensus 14 idl~~l~~N~~~l~~~~----~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~i--l~~g 87 (380)
T 3co8_A 14 FSKSSLAYNVQYTKQVS----GAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFI--LILG 87 (380)
T ss_dssp ECHHHHHHHHHHHHHHH----CCSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCE--EECS
T ss_pred EcHHHHHHHHHHHHHhC----CCcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCCE--EEEC
Confidence 45666777777666665 26899999999 999887 6677999999999999999999998 55566 3559
Q ss_pred CCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCC-hhhHHHHHHHHHhc-CC
Q 028985 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLR-CP 163 (200)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~-~e~~~~~~~~i~~~-~~ 163 (200)
+.++++++.+++ ++++++|||+++++.|++.|. .+ +++|||+|||| |+|.||. ++++.++++.+. + +|
T Consensus 88 ~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~-~~--~~~V~l~vdtG--~~R~G~~~~ee~~~~~~~i~-~~~~ 157 (380)
T 3co8_A 88 PIDVKYAPIASK----YHFLTTVSSLDWLKSADKILG-KE--KLSVNLAVDTG--MNRIGVRSKKDLKDEIEFLQ-EHSD 157 (380)
T ss_dssp CCCGGGHHHHHH----TTCEEEECCHHHHHHHHHHCT-TC--CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHH-HCTT
T ss_pred CCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-cC--CceEEEEEcCC--CCCCCCCCHHHHHHHHHHHH-hhCC
Confidence 999999999984 688999999999999999887 55 68999999999 9999999 899999999998 8 99
Q ss_pred CeEEeEEEeecCCCCC
Q 028985 164 NLEFSGLMTIGMPDYT 179 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~ 179 (200)
+|++.|||||+++.++
T Consensus 158 ~l~l~Gl~tH~~~~~~ 173 (380)
T 3co8_A 158 HFSYDGIFTHFASSDN 173 (380)
T ss_dssp TEEEEEEECCCC----
T ss_pred CceEEEEEEcCCCCCC
Confidence 9999999999998654
No 17
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.95 E-value=1.4e-27 Score=210.90 Aligned_cols=152 Identities=16% Similarity=0.254 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHHHHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLIRQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
.|+++|++|++.+++.+ +++++++|+|+ ||...+..++.. +++|+|++++||..+|+. ++.+|. +++|.
T Consensus 28 idl~al~~N~~~l~~~~----~~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~Il-~~~g~ 101 (379)
T 2rjg_A 28 INRRALRHNLQRLRELA----PASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVL-LLEGF 101 (379)
T ss_dssp EEHHHHHHHHHHHHHHS----TTSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEE-ETTCC
T ss_pred EeHHHHHHHHHHHHHhC----CCCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCEE-EEECC
Confidence 46777777777777665 36899999999 999888544444 899999999999999998 555663 47798
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC-e
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN-L 165 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~-l 165 (200)
.++++++.+++ ++++++|||+++++.|++ + +.++ +++|||+|||| |+|.||.++++.++++.+. .+|+ |
T Consensus 102 ~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--m~R~G~~~~e~~~~~~~i~-~~~~~l 171 (379)
T 2rjg_A 102 FDARDLPTISA----QHFHTAVHNEEQLAALEE-A-SLDE-PVTVWMKLDTG--MHRLGVRPEQAEAFYHRLT-QCKNVR 171 (379)
T ss_dssp SCGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CBCEEEEBCSS--CCSSSBCHHHHHHHHHHHT-TCSSBC
T ss_pred CCHHHHHHHHH----cCcEEEECCHHHHHHHHh-h-CCCC-CeEEEEEECCC--CCccCCCHHHHHHHHHHHH-hCCCcE
Confidence 99999999994 789999999999999999 6 7787 99999999999 9999999999999999998 9999 9
Q ss_pred EEeEEEeecCCCCC
Q 028985 166 EFSGLMTIGMPDYT 179 (200)
Q Consensus 166 ~~~GlmTh~a~~~~ 179 (200)
++.|+|||++++++
T Consensus 172 ~l~Gl~tH~~~~d~ 185 (379)
T 2rjg_A 172 QPVNIVSHFARADE 185 (379)
T ss_dssp SSCEEECCCSSTTC
T ss_pred EEEEEEEECCccCC
Confidence 99999999998765
No 18
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.95 E-value=7.3e-27 Score=204.36 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
|++.|++|++.+++.++ ++++++|+|+ ||...+ +.+.++|+++|+|++++|+..+++. ++.++ +++|+
T Consensus 9 dl~~l~~N~~~~~~~~~----~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~i--l~~~~ 82 (361)
T 2dy3_A 9 DLDAIAHNTRVLKQMAG----PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEV--LCWIW 82 (361)
T ss_dssp CHHHHHHHHHHHHHHHT----TSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEE--EECCC
T ss_pred eHHHHHHHHHHHHHhCC----CcEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCE--EEECC
Confidence 45666666666665552 3899999999 999887 6677999999999999999999998 55455 56788
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.++++++.+++ ++++++|||.++++.|++.+.+ +++|||+|||| |+|.||.++++.++++.+. ++|+|+
T Consensus 83 ~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~~R~G~~~~~~~~~~~~~~-~~~~l~ 151 (361)
T 2dy3_A 83 TPEQDFRAAID----RNIDLAVISPAHAKALIETDAE----HIRVSIKIDSG--LHRSGVDEQEWEGVFSALA-AAPHIE 151 (361)
T ss_dssp CTTSCHHHHHT----TTCEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--SCSSSBCHHHHHHHHHHHH-TCTTEE
T ss_pred CCHHHHHHHHH----cCCEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--CCCCCCCHHHHHHHHHHHH-hCCCCC
Confidence 88899999983 7889999999999999887642 58999999999 9999999999999999998 999999
Q ss_pred EeEEEeecCCCCC-C------chHHHHHHHHHHHhccc
Q 028985 167 FSGLMTIGMPDYT-S------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 167 ~~GlmTh~a~~~~-~------~~~~F~~l~~~~~~~~~ 197 (200)
+.|+|||+++.++ + +...|.++.+.+++.++
T Consensus 152 ~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 189 (361)
T 2dy3_A 152 VTGMFTHLACADEPENPETDRQIIAFRRALALARKHGL 189 (361)
T ss_dssp EEEEECCCC--------CHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999998643 1 34556666666665443
No 19
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.95 E-value=3.9e-27 Score=211.24 Aligned_cols=173 Identities=10% Similarity=0.104 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCChHH
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNK 91 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~~~~ 91 (200)
|+++|++|++.+++.+++ .++++++|+|+||+..+ +.++++|+++|+|++++||..+++....+|.+ ..+...+++
T Consensus 52 Dl~al~~N~~~l~~~~~~--~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~~ill-~~~~~~~~~ 128 (426)
T 3gwq_A 52 YADRVEHNLKWMQAFVAE--YGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLM-ANQLVGRRN 128 (426)
T ss_dssp EHHHHHHHHHHHHHHHHH--HCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEE-CSCCCSHHH
T ss_pred eHHHHHHHHHHHHHHHhh--cCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCCeEEE-ECCcCCHHH
Confidence 455555555555555432 36899999999999777 77889999999999999999999883234411 112334566
Q ss_pred HHhHhccCC--CccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCCh-hhHHHHHHHHHhcCC-CeEE
Q 028985 92 AKTLLGGVP--NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCP-NLEF 167 (200)
Q Consensus 92 ~~~~~~~~~--~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~-e~~~~~~~~i~~~~~-~l~~ 167 (200)
++.+++-.+ .++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+|+.+ +++.++++.+. ++| +|++
T Consensus 129 ~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~l~VdtG--~~R~Gv~~~~e~~~l~~~i~-~~~~~l~l 204 (426)
T 3gwq_A 129 MMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK-QLQVLLELGVP--GGRTGVRDAAQRNAVLEAIT-RYPDTLKL 204 (426)
T ss_dssp HHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-CEEEEEEECCT--TSSSSBCSHHHHHHHHHHHH-TSTTTEEE
T ss_pred HHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCC-eeEEEEEeCCC--CCcCCCCCHHHHHHHHHHHH-cCCCCEEE
Confidence 666541001 26789999999999999999999998 99999999999 99999985 99999999998 999 9999
Q ss_pred eEEEeecCCCCC--CchHHHHHHHHHH
Q 028985 168 SGLMTIGMPDYT--STPENFRVMDFSF 192 (200)
Q Consensus 168 ~GlmTh~a~~~~--~~~~~F~~l~~~~ 192 (200)
.|||||++..++ ..+..|+.+.+++
T Consensus 205 ~Gl~th~g~~~~~~~~~~~~~~l~~l~ 231 (426)
T 3gwq_A 205 AGVELYEGVLKEEHEVREFLQSAVAVT 231 (426)
T ss_dssp EEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred EeEEEEccccCCHHHHHHHHHHHHHHH
Confidence 999999998665 2334455555443
No 20
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.94 E-value=1.5e-27 Score=210.34 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCCCCh
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHLQS 89 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~~~~ 89 (200)
.|+++|++|++.+++.+++ .++++++|+|+||+.++ +.+.++|++.|+|++++||+.+++. ++.+| ...|.. +
T Consensus 19 idl~al~~N~~~l~~~~~~--~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~~~i--l~~~~~-~ 93 (376)
T 3llx_A 19 IDEAKLKSNINYLKQRVES--LGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLL--YAVGIA-P 93 (376)
T ss_dssp EEHHHHHHHHHHHHHHHHH--TTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEE--EEEECC-G
T ss_pred EcHHHHHHHHHHHHHHHHh--CCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCCcEE--EeCCCC-H
Confidence 3455566666666555532 36899999999999776 7788899999999999999999998 44433 234555 7
Q ss_pred HHHHhHhccC-CCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhh--HHHHHHHHHhcCCCeE
Q 028985 90 NKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS--CLGIVEHVRLRCPNLE 166 (200)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~--~~~~~~~i~~~~~~l~ 166 (200)
++++.+++-. +.++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.+++ +.++++ .+ +|+
T Consensus 94 ~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~l~~~~~----~l-~l~ 165 (376)
T 3llx_A 94 AKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ-DFSVFIEIDSD--DHRGGIKPSDSKLLTIAK----TL-GEH 165 (376)
T ss_dssp GGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--SSSSCBCTTCTHHHHHHH----HH-GGG
T ss_pred HHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCchHHHHHHHH----Hh-CCE
Confidence 8888876100 136899999999999999999998897 99999999999 9999999976 444443 33 899
Q ss_pred EeEEEeecCCCCC------------CchHHHHHHHHHHHhcc
Q 028985 167 FSGLMTIGMPDYT------------STPENFRVMDFSFRRAH 196 (200)
Q Consensus 167 ~~GlmTh~a~~~~------------~~~~~F~~l~~~~~~~~ 196 (200)
+.|||||+++.++ .|...|.++.+.+++.+
T Consensus 166 l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g 207 (376)
T 3llx_A 166 FTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAG 207 (376)
T ss_dssp EEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998543 13355666666555544
No 21
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.93 E-value=4.3e-26 Score=200.13 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCChHH
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNK 91 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~~~~ 91 (200)
|++.|++|++.+++.+++ .++++++|+|+||...+ +.+.++|+++|+|++++||..+++....++.| +.|.. +++
T Consensus 18 dl~~l~~N~~~l~~~~~~--~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~ii~-~~~~~-~~~ 93 (376)
T 3anu_A 18 DRTTARRNAERMRERCRA--LGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFDDILL-AYPVP-TAR 93 (376)
T ss_dssp EHHHHHHHHHHHHHHHHH--HTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCEEEEE-EEECC-GGG
T ss_pred eHHHHHHHHHHHHHHHHH--cCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCCeEEE-ECCCc-HHH
Confidence 445555555555544421 36899999999999887 66678999999999999999999983334422 45777 888
Q ss_pred HHhHhccCCC-ccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhh--HHHHHHHHHhcCC---Ce
Q 028985 92 AKTLLGGVPN-LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS--CLGIVEHVRLRCP---NL 165 (200)
Q Consensus 92 ~~~~~~~~~~-~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~--~~~~~~~i~~~~~---~l 165 (200)
++.+++-... ++++.+|||.++++.|++.+.+.|+ +++|+|+|||| |+|.|+.+++ +.++++.+. + | +|
T Consensus 94 l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~g--~~R~G~~~~~~~~~~l~~~i~-~-~~~~~l 168 (376)
T 3anu_A 94 LEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGK-RWLVWLKLDCG--NGRAGVRPTDPAALELAQAIA-N-DAPEEV 168 (376)
T ss_dssp HHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTC-CEEEEEEECCC----CSSBCTTSHHHHHHHHHHH-H-SCTTTE
T ss_pred HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCC-ceEEEEEECCC--CCcCCCCCCchhHHHHHHHHh-C-CCCCce
Confidence 8888720001 5789999999999999999888887 99999999999 9999999987 999999998 8 9 99
Q ss_pred EEeEEEeecCC----CCCC--------chHHHHHHHHHHHhccc
Q 028985 166 EFSGLMTIGMP----DYTS--------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 166 ~~~GlmTh~a~----~~~~--------~~~~F~~l~~~~~~~~~ 197 (200)
++.|+|||+++ ++++ +...|.++.+.+++.++
T Consensus 169 ~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~ 212 (376)
T 3anu_A 169 TLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQAGV 212 (376)
T ss_dssp EEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999553 3321 34556666666665543
No 22
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.93 E-value=1.5e-24 Score=192.95 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC-CC
Q 028985 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH-LQ 88 (200)
Q Consensus 12 ~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~-~~ 88 (200)
.|++.|++|++.+++.++ ++++++|+|+++...+ +.+.++|+ +|+|++++|+..+++. ++.+ .|++.|+ .+
T Consensus 39 idl~~l~~N~~~l~~~~~----~~~l~~vvKan~~~~v~~~l~~~G~-~~~vas~~E~~~~~~~G~~~~-~Il~~g~~~~ 112 (420)
T 2p3e_A 39 YSSNFIKERFEAYRKAFP----DALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLAKKAGIPPE-RIVYAGVGKT 112 (420)
T ss_dssp EEHHHHHHHHHHHHHHST----TSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGG-GEEECSSCCC
T ss_pred EEHHHHHHHHHHHHHhCC----cCeEEEEEecCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChh-HEEEeCCCCC
Confidence 357888888888877763 4699999999998776 77889999 9999999999999998 4332 3478898 58
Q ss_pred hHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeE------------EEEEeCCCCC--CcCCCChhhHHH
Q 028985 89 SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKV------------LVQVNTSGEE--SKSGIDPSSCLG 153 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v------------~lkvdtG~em--~R~G~~~e~~~~ 153 (200)
+++++.+++ +++ +.+|||.++++.|++.+.+.++ +++| |+++||| | +|.|+.++++.+
T Consensus 113 ~~~l~~a~~----~~i~~~~vds~~~l~~l~~~a~~~~~-~~~v~lRvn~~~~~~~~~~idtG--~~~~R~G~~~~e~~~ 185 (420)
T 2p3e_A 113 EKELTDAVD----SEILMFNVESRQELDVLNEIAGKLGK-KARIAIRVNPDVDPKTHPYIATG--MQKSKFGVDIREAQK 185 (420)
T ss_dssp HHHHHHHHH----TTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEEC------------------CCSCEEGGGHHH
T ss_pred HHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCCcccccC--CCCCCCCCCHHHHHH
Confidence 899999984 677 6999999999999999988887 9999 9999999 8 999999999999
Q ss_pred HHHHHHhcCCCeEEeEEEeecCCCCC------CchHHHHHHHHHHHhcc
Q 028985 154 IVEHVRLRCPNLEFSGLMTIGMPDYT------STPENFRVMDFSFRRAH 196 (200)
Q Consensus 154 ~~~~i~~~~~~l~~~GlmTh~a~~~~------~~~~~F~~l~~~~~~~~ 196 (200)
+++.+. .+|+|++.|+|||+++.+. ++.+.|.++.+.+++.+
T Consensus 186 ~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g 233 (420)
T 2p3e_A 186 EYEYAS-KLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKG 233 (420)
T ss_dssp HHHHHH-TCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998 9999999999999997542 24466666666665544
No 23
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.90 E-value=2.2e-22 Score=179.76 Aligned_cols=175 Identities=11% Similarity=0.071 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCCC-Ch
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHL-QS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~~-~~ 89 (200)
+++.|++|++.+++..++ .++++++|+|+++...+ +.+.++|+ +|.|++..|+..+++. ++.+ .|++.|+. +.
T Consensus 39 dl~~i~~N~~~l~~~~~~--~~~~l~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~-~i~~~g~~k~~ 114 (425)
T 2qgh_A 39 DFDKIKQAFLNYKEAFKG--RKSLICYALKANSNLSILSLLAHLES-GADCVSIGEIQRALKAGIKPY-RIVFSGVGKSA 114 (425)
T ss_dssp EHHHHHHHHHHHHHTTCS--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGG-GEEECCTTCCH
T ss_pred EHHHHHHHHHHHHHhcCc--CCCEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChh-HEEEcCCCCCH
Confidence 577888888888777643 36799999999998776 77789999 9999999999999998 4433 35777865 67
Q ss_pred HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCChhhHHHHHH
Q 028985 90 NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVE 156 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~e~~~~~~~ 156 (200)
++++.+++ +++ ..+|||.+.++.|++.+.+.++ +++|+|+||+| ++|+|.|+.++++.++++
T Consensus 115 ~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~e~~~l~~ 189 (425)
T 2qgh_A 115 FEIEQALK----LNILFLNVESFMELKTIETIAQSLGI-KARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFL 189 (425)
T ss_dssp HHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHH
T ss_pred HHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCCCCcccccCCCCCCCcCCHHHHHHHHH
Confidence 99999984 445 4799999999999999988887 99999999986 569999999999999999
Q ss_pred HHHhcCCCeEEeEEEeecCCCC-C-----CchHHHHHHHHHHHhccc
Q 028985 157 HVRLRCPNLEFSGLMTIGMPDY-T-----STPENFRVMDFSFRRAHV 197 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~~~-~-----~~~~~F~~l~~~~~~~~~ 197 (200)
.+. .+|+|++.|||||+++.+ + ++...|.++.+.+++.++
T Consensus 190 ~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~ 235 (425)
T 2qgh_A 190 WAK-KSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI 235 (425)
T ss_dssp HHH-HCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH-hCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998 999999999999998754 3 133445555555544443
No 24
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.90 E-value=4.3e-22 Score=177.97 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCcccccc
Q 028985 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (200)
Q Consensus 6 ~~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~i 84 (200)
+.++|++|++.+++.+...+...+ .++++++|+|+++...+ +.+.++|+ +|.|++.+|+..+++....+..|++.
T Consensus 36 dl~~l~~n~~~l~~~~~~a~~~~~---~~~~~~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~ 111 (434)
T 1twi_A 36 SEEQIKINYNRYIEAFKRWEEETG---KEFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVPSKKIVFN 111 (434)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHS---CCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred EHHHHHHHHHHHHHhhhhhhcccC---CCeEEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHCCCCCCcEEEE
Confidence 346677777777776655444443 26899999999998776 66789999 99999999999999883333445888
Q ss_pred CCC-ChHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCC------------CCCcCCCChhh
Q 028985 85 GHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSGIDPSS 150 (200)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~------------em~R~G~~~e~ 150 (200)
|+. ..++++.+++ +++ +++|||.+.++.|++.+.+.++ +++|+|+||+|. +|+|.|+.+++
T Consensus 112 g~~k~~~~i~~a~~----~~i~~~~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~~ 186 (434)
T 1twi_A 112 GNCKTKEEIIMGIE----ANIRAFNVDSISELILINETAKELGE-TANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES 186 (434)
T ss_dssp CSSCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTT
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCcccccCCCCCCccCChhh
Confidence 986 4688888883 667 8999999999999999988887 999999999873 37999999988
Q ss_pred --HHHHHHHHHhcCCCeEEeEEEeecCCCC
Q 028985 151 --CLGIVEHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 151 --~~~~~~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
+.++++.+. .+|+|++.|||||+++.+
T Consensus 187 ~~~~~~~~~~~-~~~~l~l~Gl~~H~gs~~ 215 (434)
T 1twi_A 187 GIAMKAIKMAL-EMEYVNVVGVHCHIGSQL 215 (434)
T ss_dssp SHHHHHHHHHH-HCSSEEEEEEECCCCSSB
T ss_pred hHHHHHHHHHH-hCCCCCEEEEEEECCCCC
Confidence 999999998 999999999999998754
No 25
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.88 E-value=2.5e-21 Score=172.68 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCC-hH
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQ-SN 90 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~-~~ 90 (200)
+++.|++|++.+++..+ .++++++|+|+++...+ +.+.++| .+|.|++..|+..++++.-.+-.|++.|+.+ .+
T Consensus 23 d~~~l~~n~~~l~~~~~---~~~~i~~avKan~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~I~~~g~~k~~~ 98 (428)
T 2j66_A 23 DGDFIEAHYRQLRSRTN---PAIQFYLSLKANNNIHLAKLFRQWG-LGVEVASAGELALARHAGFSAENIIFSGPGKKRS 98 (428)
T ss_dssp EHHHHHHHHHHHHHTSC---TTEEEEEEGGGCCCHHHHHHHHHTT-CEEEESSHHHHHHHHHTTCCGGGEEECCSCCCHH
T ss_pred eHHHHHHHHHHHHHhcC---CCcEEEEEeeeCCCHHHHHHHHHcC-CeEEEeCHHHHHHHHHcCCCcCeEEEeCCCCCHH
Confidence 46778888888777663 36899999999998776 7778899 6999999999999998832223458889875 57
Q ss_pred HHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC-------------CcCCCChhhHHHHHH
Q 028985 91 KAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE-------------SKSGIDPSSCLGIVE 156 (200)
Q Consensus 91 ~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em-------------~R~G~~~e~~~~~~~ 156 (200)
+++.+++ +++ +.+|||.+.++.|++.+.+.|+ +++|+|+||+| | +|.|+.++++.++++
T Consensus 99 ~i~~a~~----~~v~~~~vds~~el~~l~~~a~~~~~-~~~V~lrvn~g--~~~~~~~~~~~~~~srfG~~~~e~~~~~~ 171 (428)
T 2j66_A 99 ELEIAVQ----SGIYCIIAESVEELFYIEELAEKENK-TARVAIRINPD--KSFGSTAIKMGGVPRQFGMDESMLDAVMD 171 (428)
T ss_dssp HHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECS--SCC--CCCSSSCCCCSSSEEGGGHHHHHH
T ss_pred HHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CceEEEEEcCC--CCCCCCccccCCCCCCCCCCHHHHHHHHH
Confidence 8999884 667 8999999999999999988887 99999999999 6 899999999999999
Q ss_pred HHHhcCCCeEEeEEEeecCCCC
Q 028985 157 HVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
.+. .+|++++.|||||+++..
T Consensus 172 ~~~-~~~~l~l~Gl~~H~gs~~ 192 (428)
T 2j66_A 172 AVR-SLQFTKFIGIHVYTGTQN 192 (428)
T ss_dssp HHH-HCTTEEEEEEECCCCSCB
T ss_pred HHH-hCCCCCEEEEEEECCCCC
Confidence 998 999999999999988754
No 26
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.85 E-value=3.2e-20 Score=162.80 Aligned_cols=165 Identities=9% Similarity=0.031 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+++.|++|++.+++.. +++++++|+|+++...+ +.+.++|+ +|+|++++|+..+|+. ++. +| ++.|+. .
T Consensus 23 dl~~l~~N~~~l~~~~----~~~~~~~~vKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I--~~~~~~k~ 95 (372)
T 2nva_A 23 SPKIVEDLIDQWTILF----PRVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVSPSRI--IFAHTMKT 95 (372)
T ss_dssp CHHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCCGGGE--EECCSCCC
T ss_pred eHHHHHHHHHHHHHhC----CCCeEEEEeeeCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCCHHHE--EECCCCCC
Confidence 5677788887777665 35899999999998776 77889999 9999999999999987 443 35 677876 5
Q ss_pred hHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC--------CcCCCChhhHHHHHHHHH
Q 028985 89 SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--------SKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em--------~R~G~~~e~~~~~~~~i~ 159 (200)
.++++.+++ +++. .+|||.++++.|++.+. ..+|+|+||+| | +|.|+.++++.++++.+.
T Consensus 96 ~~~l~~a~~----~~v~~~~vds~~~l~~l~~~~~-----~~~v~lrv~~~--~~~~~~~~~~R~G~~~~~~~~~~~~~~ 164 (372)
T 2nva_A 96 IDDLIFAKD----QGVDIATFDSSFELDKIHTYHP-----NCKMILRIRCD--DPNATVQLGNKFGANEDEIRHLLEYAK 164 (372)
T ss_dssp HHHHHHHHH----HTCCEEEECSHHHHHHHHHHCT-----TCEEEEEBCCC--CTTCSBCCTTTSSBCGGGHHHHHHHHH
T ss_pred HHHHHHHHH----CCCCEEEeCCHHHHHHHHHhCC-----CCeEEEEEecC--CCCCcccCCCCCCCCHHHHHHHHHHHH
Confidence 788888884 5553 79999999999988753 46899999999 7 999999999999999997
Q ss_pred hcCCCeEEeEEEeecCCCCCC------chHHHHHHHHHHHhccc
Q 028985 160 LRCPNLEFSGLMTIGMPDYTS------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 160 ~~~~~l~~~GlmTh~a~~~~~------~~~~F~~l~~~~~~~~~ 197 (200)
.. ++++.|+|||+++.+.+ +.+.|.++.+.+++.|+
T Consensus 165 -~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~ 206 (372)
T 2nva_A 165 -QL-DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH 206 (372)
T ss_dssp -HT-TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -Hc-CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77 99999999999886532 23445555555544443
No 27
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.84 E-value=3.6e-20 Score=167.46 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCCCC-hH
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQ-SN 90 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~~~-~~ 90 (200)
+++.|++|++.+++..+ +++++++++|+++...+ +.+.++|+ +|.|++..|+..+++..-.+-.|++.|+.+ .+
T Consensus 48 d~~~l~~n~~~l~~~~~---~~~~i~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~g~~k~~~ 123 (467)
T 2o0t_A 48 DEDDFRSRCRETAAAFG---SGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFPPERITLHGNNKSVS 123 (467)
T ss_dssp EHHHHHHHHHHHHHHTS---SGGGBEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGEEECCTTCCHH
T ss_pred eHHHHHHHHHHHHHhcC---CCcEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCCcccEEEeCCCCCHH
Confidence 46677777777776652 46899999999998776 77779999 999999999999998832223458889864 58
Q ss_pred HHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCCh--hhHHHHH
Q 028985 91 KAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDP--SSCLGIV 155 (200)
Q Consensus 91 ~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~--e~~~~~~ 155 (200)
+++.+++ +++ ..+|||.+.++.|++.+.+.|+ +++|+|+||+| ++|+|.|+.+ +++.+++
T Consensus 124 ~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~~~e~~~~~ 198 (467)
T 2o0t_A 124 ELTAAVK----AGVGHIVVDSMTEIERLDAIAGEAGI-VQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAV 198 (467)
T ss_dssp HHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHH
T ss_pred HHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCCHHHHHHHH
Confidence 8999884 555 6899999999999999988887 99999999985 6699999987 5899999
Q ss_pred HHHHhcCCCeEEeEEEeecCCC
Q 028985 156 EHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 156 ~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
+.+. ++++|++.|||||+++.
T Consensus 199 ~~~~-~~~~l~l~Gl~~H~gs~ 219 (467)
T 2o0t_A 199 RRVF-ATDHLRLVGLHSHIGSQ 219 (467)
T ss_dssp HHHH-HCSSEEEEEEECCCEEE
T ss_pred HHHH-hCCCCCEEEEEEEcCCC
Confidence 9998 99999999999998764
No 28
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.83 E-value=7.4e-20 Score=163.43 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+++.|++|++.+++..+ ++++++++|+++...+ +.+.++| .+|+|+++.|+..+|+. ++. +| ++.|+. .
T Consensus 61 dl~~l~~N~~~l~~~~~----~~~i~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~r~~G~~~~~I--l~~g~~k~ 133 (419)
T 2plj_A 61 DCDVIRQQYRALKNALP----NVTLHYALKPLPHPVVVRTLLAEG-ASFDLATTGEVELVASEGVPADLT--IHTHPIKR 133 (419)
T ss_dssp EHHHHHHHHHHHHHHST----TEEEEEESTTCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGGE--EECCSSCC
T ss_pred eHHHHHHHHHHHHHhCC----CCeEEEEeccCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhE--EEeCCCCC
Confidence 46788888888877662 5899999999998776 7788999 89999999999999998 443 35 667875 6
Q ss_pred hHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC------CCcCCCChhhHHHHHHHHHhc
Q 028985 89 SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLR 161 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e------m~R~G~~~e~~~~~~~~i~~~ 161 (200)
.++++.+++ +++. .+|||.++++.|++.+. .++|+|+||||.+ |+|.|+.++++.++++.+. .
T Consensus 134 ~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~-----~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~-~ 203 (419)
T 2plj_A 134 DADIRDALA----YGCNVFVVDNLNELEKFKAYRD-----DVELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAK-E 203 (419)
T ss_dssp HHHHHHHHH----HTCCEEEECSHHHHHTTGGGTT-----TCEEEEEBCC---------CCCSCBCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHH-h
Confidence 788888884 5554 99999999999887642 4789999999866 9999999999999999997 7
Q ss_pred CCCeEEeEEEeecCCCCCC------chHHHHHHHHHHHhccc
Q 028985 162 CPNLEFSGLMTIGMPDYTS------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 162 ~~~l~~~GlmTh~a~~~~~------~~~~F~~l~~~~~~~~~ 197 (200)
. ++++.|+|||+++.+.+ +...|.++.+.+++.++
T Consensus 204 ~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~G~ 244 (419)
T 2plj_A 204 W-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGL 244 (419)
T ss_dssp T-TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred C-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7 99999999999986531 23445555555554444
No 29
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.82 E-value=7.8e-19 Score=157.89 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCC-CC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGH-LQ 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~-~~ 88 (200)
+++.|++|++.+++..++ .++++++++|+.+...+ +.+.+.|+ +|.|++..|+..+++. ++.+ | .+.|+ .+
T Consensus 58 dl~~l~~n~~~l~~~~~~--~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~~~g~~k~ 132 (441)
T 3n2b_A 58 SRATLERHWHAFDKSVGD--YPHLICYAVKANSNLGVLNTLARLGS-GFDIVSVGELERVLAAGGDPSKV--VFSGVGKT 132 (441)
T ss_dssp EHHHHHHHHHHHHHHTTT--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGE--EECCTTCC
T ss_pred EHHHHHHHHHHHHHhhcc--CCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCcccE--EEcCCCCC
Confidence 467778888877777643 35799999999998766 77889998 9999999999999988 4443 5 55676 46
Q ss_pred hHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCChhhHHHHH
Q 028985 89 SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIV 155 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~e~~~~~~ 155 (200)
.++++.+++ +++ +.+|||.+.++.|++.+.+.++ +++|+|+||+| .+++|.|+.++++.+++
T Consensus 133 ~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~~~~~~~~~ 207 (441)
T 3n2b_A 133 EAEMKRALQ----LKIKCFNVESEPELQRLNKVAGELGV-KAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVY 207 (441)
T ss_dssp HHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHH
T ss_pred HHHHHHHHH----CCCCEEEEcCHHHHHHHHHHHHhcCC-CcEEEEEeccCCCcCCCcccccCCCCCcccCCHHHHHHHH
Confidence 788888884 455 4899999999999999998897 99999999875 34799999999999999
Q ss_pred HHHHhcCCCeEEeEEEeecCCCC
Q 028985 156 EHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 156 ~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
+.+. .+++|++.|+|||+++..
T Consensus 208 ~~~~-~~~~l~l~Glh~H~gs~~ 229 (441)
T 3n2b_A 208 RLAH-SLPNLDVHGIDCHIGSQL 229 (441)
T ss_dssp HHHH-HCTTEEEEEEECCTTCSC
T ss_pred HHHh-cCCCeEEEEEEEeecCCC
Confidence 9998 999999999999998753
No 30
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.82 E-value=7.5e-19 Score=158.07 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCC-CC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGH-LQ 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~-~~ 88 (200)
+++.|++|++.+++..++ .++++++++|+.+...+ +.+.+.|+ +|.|++..|+..+++. ++.+ | .+.|+ .+
T Consensus 55 d~~~l~~n~~~l~~~~~~--~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~~~g~~k~ 129 (443)
T 3vab_A 55 SRATIERHFRVFHDAFAD--MDTLVTYALKANSNQAVLTALAKLGA-GADTVSQGEIRRALAAGIPANRI--VFSGVGKT 129 (443)
T ss_dssp EHHHHHHHHHHHHHHTTT--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGE--EEECTTCC
T ss_pred EHHHHHHHHHHHHHhhcc--CCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCChhhE--EEcCCCCC
Confidence 467788888887777643 35899999999998666 77889998 9999999999999988 4433 5 56676 46
Q ss_pred hHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------------CCCCcCCCChhhHHHHH
Q 028985 89 SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIV 155 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------------~em~R~G~~~e~~~~~~ 155 (200)
.++++.+++ +++. .+|||.+.++.|++.+.+.|+ +++|+|+||+| .+.+|.|+.++++.+++
T Consensus 130 ~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~~e~~~ll 204 (443)
T 3vab_A 130 PREMDFALE----AGIYCFNVESEPELEILSARAVAAGK-VAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAY 204 (443)
T ss_dssp HHHHHHHHH----HTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEECCBCTTTCCBC---CCCCSSSEEGGGHHHHH
T ss_pred HHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHH
Confidence 788888884 4554 899999999999999998897 99999999754 34499999999999999
Q ss_pred HHHHhcCCCeEEeEEEeecCCC
Q 028985 156 EHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 156 ~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
+.+. .+++|++.|||+|+++.
T Consensus 205 ~~~~-~~~~l~l~Glh~H~gs~ 225 (443)
T 3vab_A 205 ARAA-SLPGLNVVGIDMHIGSQ 225 (443)
T ss_dssp HHHH-HSTTEEEEEEECCCCSS
T ss_pred HHHh-hCCCceEEEEEEeccCC
Confidence 9998 99999999999999874
No 31
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.81 E-value=3.1e-20 Score=163.60 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCC-ccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~-i~~~~iG~~-~ 88 (200)
+++.|++|++.+++..++ .++++++++|+++...+ +.+.++|+ +|+|+++.|+..+|+. ++.+ | ++.|+. .
T Consensus 19 dl~~l~~N~~~l~~~~~~--~~~~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I--l~~~~~k~ 93 (386)
T 2yxx_A 19 FEETLRKRSRLVKEVFEG--VNLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLAAKLAGVPSHTV--VWNGNGKS 93 (386)
T ss_dssp EHHHHHHHHHHHHHHTTT--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGE--EECCSCCC
T ss_pred EHHHHHHHHHHHHHhhcc--CCceEEEEEeeCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCChhhE--EEeCCCCC
Confidence 567788888887776643 25799999999998776 77889999 9999999999999998 5444 6 567874 7
Q ss_pred hHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC----------C--CcCCCChhhHHHHH
Q 028985 89 SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE----------E--SKSGIDPSSCLGIV 155 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e----------m--~R~G~~~e~~~~~~ 155 (200)
.++++.+++ +++ ..+|||.++++.|++.+.+ +.+|+|+||+|.+ | +|.|+.+++ .+++
T Consensus 94 ~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~~~~-~~~~ 164 (386)
T 2yxx_A 94 RDQMEHFLR----EDVRIVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLED-LDSF 164 (386)
T ss_dssp HHHHHHHHH----TTCCEEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGG-HHHH
T ss_pred HHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcCc----CCeEEEEECCCCCCCCCcccccCCCCCCCCCChhH-HHHH
Confidence 888998884 678 8999999999999987642 3678888875521 3 999999988 8888
Q ss_pred HHHHhcCCCeEEeEEEeecCCCCC
Q 028985 156 EHVRLRCPNLEFSGLMTIGMPDYT 179 (200)
Q Consensus 156 ~~i~~~~~~l~~~GlmTh~a~~~~ 179 (200)
+ . +++++++.|+|||+++.+.
T Consensus 165 ~--~-~~~~l~~~Gl~~H~gs~~~ 185 (386)
T 2yxx_A 165 M--E-RFRSMNIRGLHVHIGSQIT 185 (386)
T ss_dssp H--H-HHTTSCEEEEECCCCSSBC
T ss_pred h--h-ccCCCcEEEEEEECCCCCC
Confidence 7 5 7799999999999998653
No 32
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.80 E-value=2.3e-18 Score=153.87 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCCC-Ch
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHL-QS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~~-~~ 89 (200)
+++.|++|++.+++..+ ++++++++|+++...+ +.+.++| .+|+|+++.|+..+++. ++.++ +.+-|+. ..
T Consensus 44 dl~~l~~n~~~~~~~~~----~~~~~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~-iv~~g~~k~~ 117 (425)
T 1f3t_A 44 DLGDIVRKHETWKKCLP----RVTPFYAVKCNDDWRVLGTLAALG-TGFDCASNTEIQRVRGIGVPPEK-IIYANPCKQI 117 (425)
T ss_dssp EHHHHHHHHHHHHHHCT----TEEEEEEGGGCCCHHHHHHHHHTT-CEEEECSHHHHHHHHHTTCCGGG-EEECCSSCCH
T ss_pred eHHHHHHHHHHHHHhCC----CCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEEcCCCCCH
Confidence 56777777777776652 5799999999998776 7788999 79999999999999998 54443 2344655 56
Q ss_pred HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC------CCcCCCChhhHHHHHHHHHhcC
Q 028985 90 NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRC 162 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e------m~R~G~~~e~~~~~~~~i~~~~ 162 (200)
.+++.+++ +++ ..+|||.++++.|++.+ . +++|||+||||.. |+|.|+.++++.++++.+. ..
T Consensus 118 ~~l~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~~~~~~~~-~~ 187 (425)
T 1f3t_A 118 SHIRYARD----SGVDVMTFDCVDELEKVAKTH----P-KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAK-KL 187 (425)
T ss_dssp HHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC----------CCSCBCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHH----CCCCEEEeCCHHHHHHHHHhC----C-CCcEEEEEcCCCCCccCCCCCcCCCCHHHHHHHHHHHH-hC
Confidence 78888884 566 59999999999998764 3 6889999999832 8999999999999999987 76
Q ss_pred CCeEEeEEEeecCCCCCC------chHHHHHHHHHHHhccc
Q 028985 163 PNLEFSGLMTIGMPDYTS------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~~------~~~~F~~l~~~~~~~~~ 197 (200)
++++.|+|||+++.+.+ +...|..+.+..++.|+
T Consensus 188 -~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~G~ 227 (425)
T 1f3t_A 188 -NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGF 227 (425)
T ss_dssp -TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999876531 33445666666666554
No 33
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.75 E-value=7.2e-17 Score=146.19 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCCC-Ch
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHL-QS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~~-~~ 89 (200)
+++.|++|++.+++..+ +++++.++|+++...+ +.+.++| .+|.|+++.|+..++++ ++.+. +.+-|+. ..
T Consensus 54 Dl~~l~~n~~~l~~~~~----~~~i~yavKAn~~~~v~~~l~~~G-~g~dvaS~~E~~~~~~aG~~~~~-iv~~g~~k~~ 127 (471)
T 2oo0_A 54 DLGDILKKHLRWLKALP----RVTPFYAVKCNDSKAIVKTLAATG-TGFDCASKTEIQLVQSLGVPPER-IIYANPCKQV 127 (471)
T ss_dssp EHHHHHHHHHHHHHHCT----TEEEEEEGGGCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGG-EEECCSSCCH
T ss_pred EHHHHHHHHHHHHHhCC----CCeEEEEEeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEEeCCCCCH
Confidence 45677777777766652 5799999999998766 7788999 89999999999999998 54442 1344654 56
Q ss_pred HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCC------CCCcCCCChhhHHHHHHHHHhcC
Q 028985 90 NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------EESKSGIDPSSCLGIVEHVRLRC 162 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~------em~R~G~~~e~~~~~~~~i~~~~ 162 (200)
.+++.+++ +++ ..++||.+.++.|++.+ . .++|+|+||||. .|+|.|+.++++.++++.+. ..
T Consensus 128 ~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~~~~~~~~-~~ 197 (471)
T 2oo0_A 128 SQIKYAAN----NGVQMMTFDSEVELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAK-EL 197 (471)
T ss_dssp HHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHH----CCCCEEEECCHHHHHHHHHhC----C-CCeEEEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hC
Confidence 78888874 455 48999999999998764 3 688999999983 38999999999999999987 77
Q ss_pred CCeEEeEEEeecCCCCCC------chHHHHHHHHHHHhccc
Q 028985 163 PNLEFSGLMTIGMPDYTS------TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~~------~~~~F~~l~~~~~~~~~ 197 (200)
++++.|+++|+++.+.+ +.+.|..+.+.+++.|+
T Consensus 198 -~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~~G~ 237 (471)
T 2oo0_A 198 -NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGF 237 (471)
T ss_dssp -TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999986521 33556666666666554
No 34
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.75 E-value=4.3e-17 Score=146.70 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCCC-Ch
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHL-QS 89 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~~-~~ 89 (200)
+++.|++|++.+++..+ +++++.++|+++...+ +.+.++| .+|.|+++.|+..++++ ++.+. +.+-|+. ..
T Consensus 44 d~~~l~~n~~~~~~~~~----~~~i~yavKAn~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~aG~~~~~-iv~~g~~k~~ 117 (448)
T 3btn_A 44 DLGKIVKKHSQWQTVVA----QIKPFYTVKCNSTPAVLEILAALG-TGFACSSKNEMALVQELGVSPEN-IIFTSPCKQV 117 (448)
T ss_dssp EHHHHHHHHHHHHHHCT----TEEEEEEGGGCCCHHHHHHHHHHT-CEEEESSHHHHHHHHHTTCCGGG-EEECCSSCCH
T ss_pred eHHHHHHHHHHHHHhCC----CCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEEcCCCCCH
Confidence 46777888877777663 5799999999998776 7788999 59999999999999998 55442 1344654 57
Q ss_pred HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC------CCcCCCChhhHHHHHHHHHhcC
Q 028985 90 NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRC 162 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e------m~R~G~~~e~~~~~~~~i~~~~ 162 (200)
.+++.+++ +++ ..++||.++++.|++.+ . +.+|+|+||+|.+ |+|.|+.++++.++++.+. ..
T Consensus 118 ~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~~~~~~~~-~~ 187 (448)
T 3btn_A 118 SQIKYAAK----VGVNIMTCDNEIELKKIARNH----P-NAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLECAK-EL 187 (448)
T ss_dssp HHHHHHHH----HTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCCCC--------CCCCBCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHH----cCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEEecCCCccCCCCCCcCCCCHHHHHHHHHHHH-hC
Confidence 78888873 566 58999999999998763 3 6889999999855 8999999999999999887 76
Q ss_pred CCeEEeEEEeecCCCCC------CchHHHHHHHHHHHhccc
Q 028985 163 PNLEFSGLMTIGMPDYT------STPENFRVMDFSFRRAHV 197 (200)
Q Consensus 163 ~~l~~~GlmTh~a~~~~------~~~~~F~~l~~~~~~~~~ 197 (200)
++++.|+++|+++.+. ++.+.|..+.+.+++.|+
T Consensus 188 -~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~~G~ 227 (448)
T 3btn_A 188 -DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGF 227 (448)
T ss_dssp -TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred -CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998642 133455666666666554
No 35
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.74 E-value=8.1e-18 Score=150.32 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-----CccccccC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-----DIKWHFVG 85 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-----~i~~~~iG 85 (200)
+++.|++|++.++ .. + ++++++|+++...+ +.+.++|+ +|+|+++.|+..+++. ++. .| .+.|
T Consensus 32 dl~~l~~N~~~l~-~~-----~-~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~~~~~I--v~~g 101 (425)
T 1knw_A 32 DAQIIRRQIAALK-QF-----D-VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDI--VFTA 101 (425)
T ss_dssp EHHHHHHHHHTTT-TS-----S-EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSE--EEEE
T ss_pred EHHHHHHHHHHHh-hC-----C-cceEeeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCCCCCCcCeE--EEEC
Confidence 4778888888775 43 2 89999999998666 77889996 8999999999999998 554 34 4557
Q ss_pred C-CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeE--------EEEEeCCCCCCcCCCChhhHHHHHH
Q 028985 86 H-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKV--------LVQVNTSGEESKSGIDPSSCLGIVE 156 (200)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v--------~lkvdtG~em~R~G~~~e~~~~~~~ 156 (200)
+ ....+++.+++ +++..++||.++++.|++.+.+.+. .++| |.++|||+.|+|.|+.++++.++++
T Consensus 102 ~~k~~~~l~~a~~----~~i~~~vds~~el~~l~~~a~~~~v-~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~~~~~~~~ 176 (425)
T 1knw_A 102 DVIDQATLERVSE----LQIPVNAGSVDMLDQLGQVSPGHRV-WLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALD 176 (425)
T ss_dssp SCCCHHHHHHHHH----HTCCEEESSHHHHHHHHHHSTTCEE-EEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhhhhccE-EEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHH
Confidence 5 56788888884 6777999999999999988753322 2233 3345577779999999999999999
Q ss_pred HHHhcCCCeEEeEEEeecCCCCC
Q 028985 157 HVRLRCPNLEFSGLMTIGMPDYT 179 (200)
Q Consensus 157 ~i~~~~~~l~~~GlmTh~a~~~~ 179 (200)
.+. .+ ++++.|++||+++.++
T Consensus 177 ~~~-~~-~l~l~Gl~~H~gs~~~ 197 (425)
T 1knw_A 177 VIQ-RH-HLQLVGIHMHIGSGVD 197 (425)
T ss_dssp HHH-HT-TCEEEEEECCCCCTTC
T ss_pred HHH-HC-CCCEEEEEEECCCCCC
Confidence 998 88 9999999999998763
No 36
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.71 E-value=4.4e-16 Score=139.24 Aligned_cols=167 Identities=13% Similarity=0.071 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+++.|++|++.+++.. ++++++.++|+++...+ +.+.+.|+ +|.|++..|+...++. ++. +| .+.|+. .
T Consensus 44 dl~~l~~n~~~~~~~~----~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--i~~g~~k~ 116 (424)
T 7odc_A 44 DLGDILKKHLRWLKAL----PRVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVPAERV--IYANPCKQ 116 (424)
T ss_dssp EHHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGE--EECCSSCC
T ss_pred eHHHHHHHHHHHHHhC----CCCeEEEEeccCCcHHHHHHHHHcCC-cEEECCHHHHHHHHHcCCChhhE--EECCCCCC
Confidence 4667777777777666 36899999999998766 77889998 9999999999999988 543 35 566774 5
Q ss_pred hHHHHhHhccCCCccEE-EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC------CCCCcCCCChhhHHHHHHHHHhc
Q 028985 89 SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------GEESKSGIDPSSCLGIVEHVRLR 161 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG------~em~R~G~~~e~~~~~~~~i~~~ 161 (200)
..+++.+++ .++. .++||.+.++.|++.+ . ..+|+|+||+| ..|+|.|+.++++.++++.+. .
T Consensus 117 ~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~~~~~~-~ 186 (424)
T 7odc_A 117 VSQIKYAAS----NGVQMMTFDSEIELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAK-E 186 (424)
T ss_dssp HHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC-----------CCCBCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHH----CCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-h
Confidence 678888884 4553 5899999999998874 3 57899999996 337999999999999999987 7
Q ss_pred CCCeEEeEEEeecCCCC-CC-----chHHHHHHHHHHHhccc
Q 028985 162 CPNLEFSGLMTIGMPDY-TS-----TPENFRVMDFSFRRAHV 197 (200)
Q Consensus 162 ~~~l~~~GlmTh~a~~~-~~-----~~~~F~~l~~~~~~~~~ 197 (200)
+++++.||++|+++.. +. +.+.|..+.+..++.|+
T Consensus 187 -~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~ 227 (424)
T 7odc_A 187 -LNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF 227 (424)
T ss_dssp -TTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999998753 21 22344445555555554
No 37
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.52 E-value=1.2e-12 Score=122.09 Aligned_cols=166 Identities=9% Similarity=0.035 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcC---CeeeeccHHHHHHHhcC-CCCCccc
Q 028985 7 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH---RSFGENYVQEIVDKAPQ-LPEDIKW 81 (200)
Q Consensus 7 ~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~---~~fgva~v~Ea~~lr~~-~~~~i~~ 81 (200)
.+.|+.|++.+++......+..+. +.+.+++..+|++....+ +.+.+.|+ .+|.|++..|+...++. .+..+ +
T Consensus 52 ~d~L~~ni~~l~~af~~a~~~~~y-~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~-I 129 (619)
T 3nzp_A 52 PHLIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAP-I 129 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-CSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSE-E
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc-CCCEEEEEEEeccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCE-E
Confidence 466777777777666554333332 235799999999888665 77888997 58999999999988877 43332 2
Q ss_pred cccCCCChHHHHhHh--ccCCCccEEEeeCcHHHHHHHHHHHHhcC-CCCeeEEEEEe-----------CCCCCCcCCCC
Q 028985 82 HFVGHLQSNKAKTLL--GGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVN-----------TSGEESKSGID 147 (200)
Q Consensus 82 ~~iG~~~~~~~~~~~--~~~~~~~~~~sv~s~~~a~~l~~~a~~~g-~~~~~v~lkvd-----------tG~em~R~G~~ 147 (200)
.+-|.-..+.++.++ .. ...++..+|||.+.++.|.+.+++.| + +.+|+|.|| ||++++|.|+.
T Consensus 130 v~nG~K~~e~I~~Al~a~~-~g~~v~ivVDS~~ELe~l~~~a~~~g~~-~~~V~LRInp~~~g~~~~~~TGg~~sKFGi~ 207 (619)
T 3nzp_A 130 TVNGFKDRELINIGFIAAE-MGHNITLTIEGLNELEAIIDIAKERFKP-KPNIGLRVRLHSAGVGIWAKSGGINSKFGLT 207 (619)
T ss_dssp EECSCCCHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHTTSCSC-CCEEEEEBCCTTC-------------CCSBC
T ss_pred EeCCCCCHHHHHHHHhhhh-cCCcEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEEEecCCCCCcccccCCCCCccCcCC
Confidence 344654455566543 00 12567889999999999999999888 8 899999997 46567999999
Q ss_pred hhhHHHHHHHHHhcCCCe-EEeEEEeecCCC
Q 028985 148 PSSCLGIVEHVRLRCPNL-EFSGLMTIGMPD 177 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l-~~~GlmTh~a~~ 177 (200)
++++.++++.+. +++++ ++.||++|.++.
T Consensus 208 ~ee~~~ll~~l~-~~~~L~~l~GLHfHiGSq 237 (619)
T 3nzp_A 208 STELIEAVNLLK-ENKLLEQFTMIHFHLGSQ 237 (619)
T ss_dssp HHHHHHHHHHHH-HTTCTTTEEEEECCCCSC
T ss_pred HHHHHHHHHHHH-hCCCCCceeEEEEEeCCC
Confidence 999999999998 89999 599999999764
No 38
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.50 E-value=1.6e-12 Score=121.96 Aligned_cols=167 Identities=15% Similarity=0.100 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCC-eeeeccHHHHHHHhcC-CCC-Cccc
Q 028985 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHR-SFGENYVQEIVDKAPQ-LPE-DIKW 81 (200)
Q Consensus 6 ~~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~-~fgva~v~Ea~~lr~~-~~~-~i~~ 81 (200)
+.+.|+.|++.+++.........+. +.+.+++.++|++....+ +.+.+.|+. +|.|++..|+...++. ++. .+ .
T Consensus 92 D~d~Lr~ni~~l~~af~~a~~~~~Y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~i-I 169 (666)
T 3nzq_A 92 FPQILQHRLRSINAAFKRARESYGY-NGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSV-I 169 (666)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCE-E
T ss_pred CHHHHHHHHHHHHHHHHHhHHhhcc-cCCeEEEEEEeeCChHHHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcE-E
Confidence 3466677777776666543333332 235789999999888665 778889997 9999999999988887 454 33 1
Q ss_pred cccCCCChHHHHhHhc--cCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe-----------CCCCCCcCCCCh
Q 028985 82 HFVGHLQSNKAKTLLG--GVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDP 148 (200)
Q Consensus 82 ~~iG~~~~~~~~~~~~--~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd-----------tG~em~R~G~~~ 148 (200)
.+-|.-..+.++.+++ . ...++..+|||.+.++.|++.|++.|+ +++|+|.|| ||++.+|.|+.+
T Consensus 170 v~nG~K~~eeI~~Al~~~~-~G~~v~ivVDS~~ELe~L~~~A~~~g~-~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~ 247 (666)
T 3nzq_A 170 VCNGYKDREYIRLALIGEK-MGHKVYLVIEKMSEIAIVLDEAERLNV-VPRLGVRARLASQGSGKWQSSGGEKSKFGLAA 247 (666)
T ss_dssp EECSCCCHHHHHHHHHHHH-TTCEEEEEECSHHHHHHHHHHHHHTTC-CCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCH
T ss_pred EEcCCCCHHHHHHHHHhhc-cCCCEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEEecCCCCcCccccCCCCCcCcCCH
Confidence 3346545666777662 0 014677899999999999999999997 999999984 564559999999
Q ss_pred hhHHHHHHHHHhcCCCeE-EeEEEeecCCC
Q 028985 149 SSCLGIVEHVRLRCPNLE-FSGLMTIGMPD 177 (200)
Q Consensus 149 e~~~~~~~~i~~~~~~l~-~~GlmTh~a~~ 177 (200)
+++.++++.+. ++++++ +.||++|.++.
T Consensus 248 ~e~~~ll~~l~-~~~~L~~l~GLHfHiGSq 276 (666)
T 3nzq_A 248 TQVLQLVETLR-EAGRLDSLQLLHFHLGSQ 276 (666)
T ss_dssp HHHHHHHHHHH-HTTCTTTEEEEECCCCSS
T ss_pred HHHHHHHHHHH-hCCCCCCeEEEEEECCCC
Confidence 99999999998 999997 99999999864
No 39
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.42 E-value=8e-12 Score=116.94 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcC------CeeeeccHHHHHHHhcC-CCC
Q 028985 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH------RSFGENYVQEIVDKAPQ-LPE 77 (200)
Q Consensus 6 ~~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~------~~fgva~v~Ea~~lr~~-~~~ 77 (200)
+.+.|+.|++.+++.........+. +.+.+++..+|++....+ +.+.+.|+ .+|.|++..|+...++. ++.
T Consensus 70 D~d~L~~ni~~l~~af~~a~~~~~y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~ 148 (648)
T 3n2o_A 70 FPQILHQRVHSICDAFNQAIEEYQY-PNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHA 148 (648)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-SSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSS
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcc-cCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCC
Confidence 3466777777777666543333322 135789999999888665 77888884 89999999999988777 444
Q ss_pred -CccccccCCCChHHHHhHhc--cCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe-----------CCCCCCc
Q 028985 78 -DIKWHFVGHLQSNKAKTLLG--GVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESK 143 (200)
Q Consensus 78 -~i~~~~iG~~~~~~~~~~~~--~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd-----------tG~em~R 143 (200)
.+ ..+-|.-..+.++.+++ . ...++..+|||.+.++.|.+.|++.|+ +++|+|.|| ||++.+|
T Consensus 149 e~i-Iv~nG~K~~eeI~~Al~~~~-~G~~v~IvVDS~~EL~~I~~~A~~~g~-~~~V~LRInp~~~~~~~~i~TGg~~SK 225 (648)
T 3n2o_A 149 SSV-IVCNGYKDREYIRLALIGEK-LGHKVFIVLEKMSELDLVLREAKSLGV-TPRLGIRIRLASQGAGKWQASGGEKSK 225 (648)
T ss_dssp CCE-EEECSCCCHHHHHHHHHHHH-TTCEEEEEECSTHHHHHHHHHHHHHTC-CCEEEEEBCCSTTSTTTTCSSSSCCCC
T ss_pred CcE-EEecCCCCHHHHHHHHHhhc-CCCCEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEEECCCCCCCCccccCCCCCc
Confidence 22 13447555666776652 0 014567899999999999999999997 999999996 5656699
Q ss_pred CCCChhhHHHHHHHHHhcCCCeE-EeEEEeecCCC
Q 028985 144 SGIDPSSCLGIVEHVRLRCPNLE-FSGLMTIGMPD 177 (200)
Q Consensus 144 ~G~~~e~~~~~~~~i~~~~~~l~-~~GlmTh~a~~ 177 (200)
.|+.++++.++++.+. +++++. +.||++|.++.
T Consensus 226 FGi~~~e~~~ll~~l~-~~~~L~~l~GLHfHiGSq 259 (648)
T 3n2o_A 226 FGLSASQVLNVISRLK-KENQLDTLQLVHFHLGSQ 259 (648)
T ss_dssp CCBCHHHHHHHHHHHH-HTTCGGGEEEEECCCCSS
T ss_pred CcCCHHHHHHHHHHHH-hCCCCCceEEEEEECCCC
Confidence 9999999999999998 999997 99999999764
No 40
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=99.33 E-value=1.1e-12 Score=115.05 Aligned_cols=160 Identities=8% Similarity=-0.019 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccC
Q 028985 7 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVG 85 (200)
Q Consensus 7 ~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG 85 (200)
.+.|++|++.+++.... ++++++.++|+.+...+ +.+.+.|+ +|.+++..|+...++.++.+| ++.|
T Consensus 11 ~~~l~~n~~~l~~~~~~---------~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~~~~~i--i~~~ 78 (365)
T 3mt1_A 11 KAKLTRNMERIAHVREK---------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKET--HAYS 78 (365)
T ss_dssp HHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHTTTSC-EEEESSHHHHHHHHHHTCSEE--EEEE
T ss_pred HHHHHHHHHHHHHHHhh---------cCCEEEEEehhcCCHHHHHHHHHhCC-eEEECCHHHHHHHHhhCCCce--EEEC
Confidence 35556666655554421 25799999999988665 77778897 799999999998876554445 5667
Q ss_pred CC-ChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCC-------CCeeEEEEEeCCCCCCcCCCChhhHHHHHHH
Q 028985 86 HL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-------KPLKVLVQVNTSGEESKSGIDPSSCLGIVEH 157 (200)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~-------~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~ 157 (200)
+. ...+++.+++ .+...++||.+.++.|++.+.+.+. .....|.++|||...+|.|++++++.+.
T Consensus 79 ~~k~~~el~~a~~----~g~~i~vds~~el~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~~~--- 151 (365)
T 3mt1_A 79 VAYGDNEIDEVVS----HADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER--- 151 (365)
T ss_dssp SCCCTTTHHHHHH----HCSEEEESSHHHHHHHGGGGTTSEEEEEECCC----------------CCSBCCHHHHHT---
T ss_pred CCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHhccCCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHhhh---
Confidence 65 4567888873 4456789999999999988764321 0223477788994449999999877642
Q ss_pred HHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHH
Q 028985 158 VRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFS 191 (200)
Q Consensus 158 i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~ 191 (200)
.++ ++.|+++|.++.-. ....|.++.+.
T Consensus 152 ---~l~--~~~Glh~HigSq~~-~~~~~~~~~~~ 179 (365)
T 3mt1_A 152 ---VMD--RINGFMIHNNCENK-DFGLFDRMLGE 179 (365)
T ss_dssp ---TGG--GCSEEEECCC--CC-SHHHHHHHHHH
T ss_pred ---ccC--CeEEEEEeCCCCCC-CHHHHHHHHHH
Confidence 222 78999999986432 23445555443
No 41
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=99.21 E-value=1e-11 Score=110.86 Aligned_cols=154 Identities=10% Similarity=0.021 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcCCCCCccccccCC
Q 028985 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGH 86 (200)
Q Consensus 8 ~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~iG~ 86 (200)
+.|++|++.+++.... .+++++.++|+.+...+ +.+.+.|+ +|.+++..|+...++.++.+| ++.|+
T Consensus 52 ~~l~~n~~~l~~~~~~---------~~~~i~yAvKAN~~~~vl~~l~~~G~-G~dvaS~~El~~a~~~~~~~I--i~~~~ 119 (418)
T 3n29_A 52 DKLRKNCELLASVGEK---------SGAKVLLALKGFAFSGAMKIVGEYLK-GCTCSGLWEAKFAKEYMDKEI--HTYSP 119 (418)
T ss_dssp HHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHHHHSC-EEEESSHHHHHHHHHHTCSEE--EEEES
T ss_pred HHHHHHHHHHHHhhhh---------cCCEEEEEEccCCCHHHHHHHHHcCC-eEEECCHHHHHHHHhhCCCCE--EEECC
Confidence 5555555555544321 25799999999888665 77778885 699999999998877654445 56677
Q ss_pred C-ChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe------------CCCCCCcCCCChhhHHH
Q 028985 87 L-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDPSSCLG 153 (200)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd------------tG~em~R~G~~~e~~~~ 153 (200)
. ...+++.+++ ..+..++||.+.++.|++.+. +.+|+|.|| ||...+|.|++++++.+
T Consensus 120 ~k~~~el~~A~~----~g~~i~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~~~~~ 190 (418)
T 3n29_A 120 AFKEDEIGEIAS----LSHHIVFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFEN 190 (418)
T ss_dssp SCCHHHHHHHHH----HCSEEEESSHHHHHHHGGGCT-----TSEEEEEBCCCCC----------CTTCCSSBCGGGGTT
T ss_pred CCCHHHHHHHHH----cCCeEEECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHHHHHH
Confidence 6 4567888874 455679999999999987754 456777775 45334999999987654
Q ss_pred HHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHH
Q 028985 154 IVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSF 192 (200)
Q Consensus 154 ~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~ 192 (200)
. .++ ++.||++|.++. . ....|.++.+.+
T Consensus 191 -----~-~l~--~l~Glh~HigSq-~-~~~~~~~~~~~~ 219 (418)
T 3n29_A 191 -----V-DLN--AIEGLHFHALCE-E-SADALEAVLKVF 219 (418)
T ss_dssp -----C-CCT--TCCEEECCCCSS-B-CHHHHHHHHHHH
T ss_pred -----h-hcC--ceEEEEEecCCC-C-CHHHHHHHHHHH
Confidence 1 333 789999999876 2 345566555543
No 42
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=54.72 E-value=34 Score=27.39 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhcCCeeee------------------------ccHHHHHHHhcCCCCCcccccc-CCCChHHHHhHhcc
Q 028985 44 KPVSLIRQVYDAGHRSFGE------------------------NYVQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (200)
Q Consensus 44 hg~~~i~~~~~~G~~~fgv------------------------a~v~Ea~~lr~~~~~~i~~~~i-G~~~~~~~~~~~~~ 98 (200)
-|...++.+..+|+..+.+ ++.+.+.+....+...+.+..+ ..+..+.+..++.
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~- 117 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA- 117 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHh-
Confidence 5556568888999988765 4444444433332222222222 3345555666662
Q ss_pred CCCccEEE-eeCcHHHHHHHHHHHHhcCC
Q 028985 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 99 ~~~~~~~~-sv~s~~~a~~l~~~a~~~g~ 126 (200)
.++++. +.|+.+.-..+++.|.+.++
T Consensus 118 --~~DvVi~~~d~~~~r~~l~~~~~~~~~ 144 (251)
T 1zud_1 118 --RADVVLDCTDNMATRQEINAACVALNT 144 (251)
T ss_dssp --HCSEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred --cCCEEEECCCCHHHHHHHHHHHHHhCC
Confidence 467665 77899888889999988775
No 43
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=54.23 E-value=85 Score=25.33 Aligned_cols=93 Identities=10% Similarity=0.011 Sum_probs=57.2
Q ss_pred ccEEEeeC-cHHHHHHHHHHHHhcCCCCeeEEEEEe--------CCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEe
Q 028985 102 LDMVEGVG-NEKIANHLDKAVSNLGRKPLKVLVQVN--------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 172 (200)
Q Consensus 102 ~~~~~sv~-s~~~a~~l~~~a~~~g~~~~~v~lkvd--------tG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmT 172 (200)
+.++.+|. ....+..+.+.|.+.|+ .+=+|+-+. .|.+.-..|..++++...++....+.|+. .|+.-
T Consensus 28 ~pvT~Ai~P~~p~~~~~a~~A~~~G~-EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a--~GvnN 104 (245)
T 2nly_A 28 IPVTVAVMPFLEHSTKQAEIAQAAGL-EVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYA--VGLNN 104 (245)
T ss_dssp SCEEEEECSSSTTHHHHHHHHHHTTC-EEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTC--CEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHCCC-EEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCc--EEEec
Confidence 44554442 11234566677778887 666666542 23223345778888877776554378875 69999
Q ss_pred ecCCCCCCchHHHHHHHHHHHhccc
Q 028985 173 IGMPDYTSTPENFRVMDFSFRRAHV 197 (200)
Q Consensus 173 h~a~~~~~~~~~F~~l~~~~~~~~~ 197 (200)
|-+..-.......+.+...+++.|.
T Consensus 105 HmGS~~T~~~~~m~~vm~~l~~~gL 129 (245)
T 2nly_A 105 HMGSKIVENEKIMRAILEVVKEKNA 129 (245)
T ss_dssp EECTTGGGCHHHHHHHHHHHHHTTC
T ss_pred ccccchhcCHHHHHHHHHHHHHCCC
Confidence 9987443345667777777777664
No 44
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=42.33 E-value=86 Score=25.67 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=62.2
Q ss_pred CcEEEEEecc---------CCHHHHHHHHHhcCCeeeecc--------HHHHHHHhcCCCCCc-ccccc-CCCChHHHHh
Q 028985 34 QIRVVAVSKT---------KPVSLIRQVYDAGHRSFGENY--------VQEIVDKAPQLPEDI-KWHFV-GHLQSNKAKT 94 (200)
Q Consensus 34 ~v~l~aVvKa---------hg~~~i~~~~~~G~~~fgva~--------v~Ea~~lr~~~~~~i-~~~~i-G~~~~~~~~~ 94 (200)
.+.++|=+|. .....+...+++|+..+.|-+ ++.....|+..+.|+ +=-|| -+.|-.+.+.
T Consensus 45 ~~~iIAEiKraSPSkg~i~~dp~~iA~~~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~ 124 (258)
T 4a29_A 45 ITAIIAVYERKSPSGLDVERDPIEYAKFMERYAVGLSITTEEKYFNGSYETLRKIASSVSIPILMSDFIVKESQIDDAYN 124 (258)
T ss_dssp CCCEEEEECSBCTTSCBCCCCHHHHHHHHTTTCSEEEEECCSTTTCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCCCccCCHHHHHHHHhCCCeEEEEeCCCCCCCCCHHHHHHHHHhcCCCEeeccccccHHHHHHHHH
Confidence 3568999995 223445556788999888754 344555566544453 22233 4445444443
Q ss_pred HhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC
Q 028985 95 LLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE 141 (200)
Q Consensus 95 ~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em 141 (200)
+-. +-.=++.++=+.+++..|.+.|...|. .|+++|.+-.|+
T Consensus 125 ~GA--DaILLI~a~L~~~~l~~l~~~A~~lGl---~~LvEVh~~~El 166 (258)
T 4a29_A 125 LGA--DTVLLIVKILTERELESLLEYARSYGM---EPLILINDENDL 166 (258)
T ss_dssp HTC--SEEEEEGGGSCHHHHHHHHHHHHHTTC---CCEEEESSHHHH
T ss_pred cCC--CeeehHHhhcCHHHHHHHHHHHHHHhH---HHHHhcchHHHH
Confidence 321 112244556677888999999998774 688898765333
No 45
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=41.56 E-value=1.4e+02 Score=24.24 Aligned_cols=81 Identities=6% Similarity=0.080 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEeC--------CCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHH
Q 028985 114 ANHLDKAVSNLGRKPLKVLVQVNT--------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENF 185 (200)
Q Consensus 114 a~~l~~~a~~~g~~~~~v~lkvdt--------G~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F 185 (200)
+..+.+.|.+.|+ .+=+|+-+.. |.+.-+.|..++++...++......|+. .|+.-|-+..-......+
T Consensus 68 ~~~~a~~A~~~G~-EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a--~GvnNHmGS~~T~~~~~M 144 (261)
T 2qv5_A 68 LQRWMQDARREGH-EILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNY--TGVMNYLGGRFLAEQSAL 144 (261)
T ss_dssp HHHHHHHHHHHTC-CEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCC--SEEEEEECTTGGGCHHHH
T ss_pred HHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHHHHHCCCc--EEEecccccchhcCHHHH
Confidence 4556677777887 7767766542 2222345677788877776554377864 799999987443345667
Q ss_pred HHHHHHHHhccc
Q 028985 186 RVMDFSFRRAHV 197 (200)
Q Consensus 186 ~~l~~~~~~~~~ 197 (200)
+.+.+.+++.|.
T Consensus 145 ~~vm~~L~~~gL 156 (261)
T 2qv5_A 145 EPVMRDIGKRGL 156 (261)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 777777766654
No 46
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=40.69 E-value=92 Score=24.88 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=16.5
Q ss_pred EEEEeccCCHHHHHHHHHhcCCeeeecc
Q 028985 37 VVAVSKTKPVSLIRQVYDAGHRSFGENY 64 (200)
Q Consensus 37 l~aVvKahg~~~i~~~~~~G~~~fgva~ 64 (200)
+++++ .|...++..+.+.|+++++++.
T Consensus 137 ~iG~S-~ht~~Ea~~A~~~GaDyI~vgp 163 (243)
T 3o63_A 137 LIGRS-THDPDQVAAAAAGDADYFCVGP 163 (243)
T ss_dssp EEEEE-ECSHHHHHHHHHSSCSEEEECC
T ss_pred EEEEe-CCCHHHHHHHhhCCCCEEEEcC
Confidence 34443 3666666666667777777644
No 47
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=40.49 E-value=90 Score=26.22 Aligned_cols=59 Identities=7% Similarity=0.060 Sum_probs=39.3
Q ss_pred cCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCC-eEEeEEEeecCCCCCC-chHHHHHHHHHHHh
Q 028985 124 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGMPDYTS-TPENFRVMDFSFRR 194 (200)
Q Consensus 124 ~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~-l~~~GlmTh~a~~~~~-~~~~F~~l~~~~~~ 194 (200)
.|- .++|+|-.|+| .+|+..++-.+ ..|. +++.||-|-+++..-+ ...+=.++.+++.+
T Consensus 10 ~~~-~~~vilD~DpG---------iDDa~AL~~al--~~p~~iel~gITtv~GN~~~~~~~~Nal~lL~~~g~ 70 (338)
T 3epw_A 10 HGS-AKNVVLDHDGN---------LDDFVAMVLLA--SNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHN 70 (338)
T ss_dssp ----CEEEEEEECCS---------HHHHHHHHHHH--HCTTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cCc-cceEEEECCCC---------hHHHHHHHHHH--hCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHhCC
Confidence 464 78999888887 47888877665 5689 9999999999876422 22334445555543
No 48
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=39.12 E-value=1.6e+02 Score=24.06 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=58.5
Q ss_pred cEEEEEecc-----------CCHHHH-HHHHHhcCCeeee--------ccHHHHHHHhcCCCCCc-cccccCCCChHHHH
Q 028985 35 IRVVAVSKT-----------KPVSLI-RQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDI-KWHFVGHLQSNKAK 93 (200)
Q Consensus 35 v~l~aVvKa-----------hg~~~i-~~~~~~G~~~fgv--------a~v~Ea~~lr~~~~~~i-~~~~iG~~~~~~~~ 93 (200)
+.+++=+|- .....+ +...++|+..+.| ..++.....|+....|+ +=.|+ ..+.++.
T Consensus 59 ~~vIaE~KraSPSkG~i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi--~d~~qi~ 136 (272)
T 3tsm_A 59 FALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFL--FDPYQVY 136 (272)
T ss_dssp CEEEEEECSEETTTEESCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCC--CSTHHHH
T ss_pred ceEEEEeccCCCCCCccCCCCCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCcc--CCHHHHH
Confidence 679999885 223444 5667889999988 67777777777655564 11232 3333444
Q ss_pred hHhccCCCccEEE---eeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC
Q 028985 94 TLLGGVPNLDMVE---GVGNEKIANHLDKAVSNLGRKPLKVLVQVNT 137 (200)
Q Consensus 94 ~~~~~~~~~~~~~---sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt 137 (200)
.+.. -..+.+. +.-+.+.++.+-+.+...| +.+++++.+
T Consensus 137 ea~~--~GAD~VlLi~a~L~~~~l~~l~~~a~~lG---l~~lvevh~ 178 (272)
T 3tsm_A 137 EARS--WGADCILIIMASVDDDLAKELEDTAFALG---MDALIEVHD 178 (272)
T ss_dssp HHHH--TTCSEEEEETTTSCHHHHHHHHHHHHHTT---CEEEEEECS
T ss_pred HHHH--cCCCEEEEcccccCHHHHHHHHHHHHHcC---CeEEEEeCC
Confidence 4331 1244433 3345667888888888776 467777764
No 49
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=35.69 E-value=1.9e+02 Score=24.05 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCcEEEEEeccCCHHHHHHHHHhcCCeeeecc-HHHHHHHhcCCCCCccccccCCCChHHHHhHhccCCCccEEEeeC--
Q 028985 33 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENY-VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVG-- 109 (200)
Q Consensus 33 ~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~-v~Ea~~lr~~~~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~~sv~-- 109 (200)
+++++.+-+.+.. .+..+.++|++.+.+.. ..+.-- +..+.....+.+- .+ ..-++.+-+ ....+..++.
T Consensus 88 ~~~~i~~l~~~~~--~i~~a~~~g~~~v~i~~~~s~~~~-~~~~~~s~~e~l~-~~-~~~v~~ak~--~G~~v~~~~~~~ 160 (337)
T 3ble_A 88 ERIEILGFVDGNK--TVDWIKDSGAKVLNLLTKGSLHHL-EKQLGKTPKEFFT-DV-SFVIEYAIK--SGLKINVYLEDW 160 (337)
T ss_dssp GGEEEEEESSTTH--HHHHHHHHTCCEEEEEEECSHHHH-HHHTCCCHHHHHH-HH-HHHHHHHHH--TTCEEEEEEETH
T ss_pred CCCeEEEEccchh--hHHHHHHCCCCEEEEEEecCHHHH-HHHhCCCHHHHHH-HH-HHHHHHHHH--CCCEEEEEEEEC
Confidence 3567877777643 57777889988866632 222211 1111111111100 00 000111111 0122333332
Q ss_pred ------cHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEee
Q 028985 110 ------NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 173 (200)
Q Consensus 110 ------s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh 173 (200)
+++.+..+.+.+.+.|. +..-=-||-|- ..|+++.++++.+.+.+|.+.+ |+-+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~Ga---~~i~l~DT~G~-----~~P~~v~~lv~~l~~~~p~~~i-~~H~H 221 (337)
T 3ble_A 161 SNGFRNSPDYVKSLVEHLSKEHI---ERIFLPDTLGV-----LSPEETFQGVDSLIQKYPDIHF-EFHGH 221 (337)
T ss_dssp HHHHHHCHHHHHHHHHHHHTSCC---SEEEEECTTCC-----CCHHHHHHHHHHHHHHCTTSCE-EEECB
T ss_pred CCCCcCCHHHHHHHHHHHHHcCC---CEEEEecCCCC-----cCHHHHHHHHHHHHHhcCCCeE-EEEec
Confidence 36666667777777775 23223577522 4689999999998746776654 66666
No 50
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=31.90 E-value=1.5e+02 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
+.++..-+.+++.|. .+.+.+. | . . ..+++.+.++++.+.
T Consensus 120 ~~~~~~i~~ak~~G~-~v~~~~~-~-a---~--~~~~e~~~~ia~~~~ 159 (345)
T 1nvm_A 120 DVSKQHIEYARNLGM-DTVGFLM-M-S---H--MIPAEKLAEQGKLME 159 (345)
T ss_dssp GGGHHHHHHHHHHTC-EEEEEEE-S-T---T--SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-EEEEEEE-e-C---C--CCCHHHHHHHHHHHH
Confidence 455555556666665 4444332 1 1 1 234566666666554
No 51
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=31.27 E-value=69 Score=28.02 Aligned_cols=102 Identities=16% Similarity=0.302 Sum_probs=55.7
Q ss_pred CcEEEEEeccCCH----HHHHHHHHhcCC--eeeeccHHHHHHHhc-------C-CCCCc--cccccCCCChHHHHhHhc
Q 028985 34 QIRVVAVSKTKPV----SLIRQVYDAGHR--SFGENYVQEIVDKAP-------Q-LPEDI--KWHFVGHLQSNKAKTLLG 97 (200)
Q Consensus 34 ~v~l~aVvKahg~----~~i~~~~~~G~~--~fgva~v~Ea~~lr~-------~-~~~~i--~~~~iG~~~~~~~~~~~~ 97 (200)
.|+=|--+++... .+|..+.++|++ .++|+..++|..+.+ . .+.|+ .+||-+.+-...+..+.+
T Consensus 25 ~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~vPLVADiHF~~~~al~a~~~~a~ 104 (406)
T 4g9p_A 25 AVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAE 104 (406)
T ss_dssp EEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECCSSHHHHHHHCHHHHH
T ss_pred eeeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCCCceEeeecccHHHHHHHHHHHHh
Confidence 3444555566664 335677899988 589999998876432 1 33342 335543332222222221
Q ss_pred cCCCccEEE-eeC----cHHHHHHHHHHHHhcCCCCeeEEEEEeCC
Q 028985 98 GVPNLDMVE-GVG----NEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (200)
Q Consensus 98 ~~~~~~~~~-sv~----s~~~a~~l~~~a~~~g~~~~~v~lkvdtG 138 (200)
.+..+.+-| .+. +.+....+-+.|++.++ ++++ =||.|
T Consensus 105 ~~dkiRINPGNig~~~k~~e~~~~vv~~ak~~~~-pIRI--GVN~G 147 (406)
T 4g9p_A 105 ALDKFRINPGTLGRGRHKDEHFAEMIRIAMDLGK-PVRI--GANWG 147 (406)
T ss_dssp HCSEEEECTTSSCSTHHHHHHHHHHHHHHHHHTC-CEEE--EEEGG
T ss_pred HHhhcccCccccCccccHHHHHHHHHHHHHHccC-Ccee--ccccc
Confidence 101122211 122 34567778888888886 6555 78988
No 52
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=27.62 E-value=2.4e+02 Score=24.26 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=77.8
Q ss_pred CcEEEEEecc--CCH----HHHHHHHHhcCC--eeeeccHHHHHHHhcC---CCCCc--cccccCCCChHHHHhHhccCC
Q 028985 34 QIRVVAVSKT--KPV----SLIRQVYDAGHR--SFGENYVQEIVDKAPQ---LPEDI--KWHFVGHLQSNKAKTLLGGVP 100 (200)
Q Consensus 34 ~v~l~aVvKa--hg~----~~i~~~~~~G~~--~fgva~v~Ea~~lr~~---~~~~i--~~~~iG~~~~~~~~~~~~~~~ 100 (200)
++.+-..+.+ ... ..|..+.++|++ .+++...++|..+..- .+.|+ .+| ++...+...++ .
T Consensus 31 Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiH----f~~~lal~a~e--~ 104 (366)
T 3noy_A 31 PIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIH----FAPSYAFLSME--K 104 (366)
T ss_dssp CCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECC----SCHHHHHHHHH--T
T ss_pred cEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCC----CCHHHHHHHHH--h
Confidence 4566555554 553 335667899998 4888887776654332 33343 223 45555555553 1
Q ss_pred CccE---EE-eeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCC----CcCC-CChhh----HHHHHHHHHhcCCCeEE
Q 028985 101 NLDM---VE-GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE----SKSG-IDPSS----CLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 101 ~~~~---~~-sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em----~R~G-~~~e~----~~~~~~~i~~~~~~l~~ 167 (200)
..+. -+ .+.+.+..+.+-+.|++.|. +++| =||.|.=. .|.| -.|+. +.+.++.+. .+..=++
T Consensus 105 G~dklRINPGNig~~~~~~~vv~~ak~~~~-piRI--GvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e-~~gf~~i 180 (366)
T 3noy_A 105 GVHGIRINPGNIGKEEIVREIVEEAKRRGV-AVRI--GVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFE-KWGFTNY 180 (366)
T ss_dssp TCSEEEECHHHHSCHHHHHHHHHHHHHHTC-EEEE--EEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCCCE
T ss_pred CCCeEEECCcccCchhHHHHHHHHHHHcCC-CEEE--ecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHH-hCCCCeE
Confidence 1222 11 34466777888899998886 6554 78988321 2455 44533 333344443 4332223
Q ss_pred eEEEeecCCCCCCchHHHHHHHHH
Q 028985 168 SGLMTIGMPDYTSTPENFRVMDFS 191 (200)
Q Consensus 168 ~GlmTh~a~~~~~~~~~F~~l~~~ 191 (200)
+.|+-+++.......|+.+.+.
T Consensus 181 --viS~K~S~v~~~i~ayr~la~~ 202 (366)
T 3noy_A 181 --KVSIKGSDVLQNVRANLIFAER 202 (366)
T ss_dssp --EEEEECSSHHHHHHHHHHHHHH
T ss_pred --EEeeecCChHHHHHHHHHHHhc
Confidence 2455443322234556666554
No 53
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=25.56 E-value=2.8e+02 Score=22.83 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=31.9
Q ss_pred cCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCC
Q 028985 124 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 124 ~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
.|- ..+|++-.|+| .+|+..++-.+ ..|.+++.||.|-+++..
T Consensus 10 ~~~-~~~viiD~D~G---------iDDa~AL~~al--~~p~i~l~gIttv~GN~~ 52 (322)
T 1yoe_A 10 HGS-ALPILLDCDPG---------HDDAIAIVLAL--ASPELDVKAITSSAGNQT 52 (322)
T ss_dssp -CC-CEEEEEEECCS---------HHHHHHHHHHH--TCTTEEEEEEEECSSSSC
T ss_pred cCC-CceEEEECCCC---------HHHHHHHHHHH--hCCCCEEEEEEEcCCCCC
Confidence 454 67788777776 37888776555 569999999999987654
No 54
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=25.02 E-value=2.3e+02 Score=22.05 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCe--eeecc----------HHHHHHHhcCCCCCccccccCCCChHHHHhHhccCCCccEEEe-eC--cH
Q 028985 47 SLIRQVYDAGHRS--FGENY----------VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEG-VG--NE 111 (200)
Q Consensus 47 ~~i~~~~~~G~~~--fgva~----------v~Ea~~lr~~~~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~~s-v~--s~ 111 (200)
+.++.+.+.|+++ +.+.- .+.+..+|+..+.++.-|++..-+.+.++.+.+ -..+.++. .. ..
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~--aGadgv~vh~e~~~~ 98 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAK--AGADIISVHVEHNAS 98 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHH--HTCSEEEEECSTTTC
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHH--cCCCEEEECcccccc
Confidence 4457777888886 45431 255666666543344445655322223444432 12455421 22 12
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCC-----CchHHHH
Q 028985 112 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-----STPENFR 186 (200)
Q Consensus 112 ~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~-----~~~~~F~ 186 (200)
+.....-+.+++.|. .+.+ -++.+ .|.+. ++.+. ++....++||.++.... ...+..+
T Consensus 99 ~~~~~~~~~i~~~g~-~~gv--~~~p~--------t~~e~---~~~~~---~~~D~v~~msv~pg~ggq~~~~~~~~~i~ 161 (230)
T 1tqj_A 99 PHLHRTLCQIRELGK-KAGA--VLNPS--------TPLDF---LEYVL---PVCDLILIMSVNPGFGGQSFIPEVLPKIR 161 (230)
T ss_dssp TTHHHHHHHHHHTTC-EEEE--EECTT--------CCGGG---GTTTG---GGCSEEEEESSCC----CCCCGGGHHHHH
T ss_pred hhHHHHHHHHHHcCC-cEEE--EEeCC--------CcHHH---HHHHH---hcCCEEEEEEeccccCCccCcHHHHHHHH
Confidence 345555666666775 5444 34433 12111 12222 35668889999886322 1345566
Q ss_pred HHHHHHH
Q 028985 187 VMDFSFR 193 (200)
Q Consensus 187 ~l~~~~~ 193 (200)
++++..+
T Consensus 162 ~lr~~~~ 168 (230)
T 1tqj_A 162 ALRQMCD 168 (230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 55
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=23.36 E-value=2e+02 Score=24.23 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCC----------HHH-HHHHHHhcCCeeeecc----------HHHH
Q 028985 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKP----------VSL-IRQVYDAGHRSFGENY----------VQEI 68 (200)
Q Consensus 10 l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg----------~~~-i~~~~~~G~~~fgva~----------v~Ea 68 (200)
+.++.+.+.+-++.+++.+|..+=.++|-+-...++ ... ++.+.++|++++.+.. .+-+
T Consensus 207 lenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~ 286 (364)
T 1vyr_A 207 VENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFR 286 (364)
T ss_dssp HHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHH
T ss_pred hhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHH
Confidence 667788888888888888864211122222111222 122 3667789999988753 1223
Q ss_pred HHHhcCCCCCccccccCCCChHHHHhHhccCCCccEEE
Q 028985 69 VDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVE 106 (200)
Q Consensus 69 ~~lr~~~~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~~ 106 (200)
..+++..+.|+ ...|.+..+.+..+++. ...+++.
T Consensus 287 ~~v~~~~~iPv--i~~Ggit~~~a~~~l~~-g~aD~V~ 321 (364)
T 1vyr_A 287 QKVRERFHGVI--IGAGAYTAEKAEDLIGK-GLIDAVA 321 (364)
T ss_dssp HHHHHHCCSEE--EEESSCCHHHHHHHHHT-TSCSEEE
T ss_pred HHHHHHCCCCE--EEECCcCHHHHHHHHHC-CCccEEE
Confidence 33444443343 23466666777777641 2256643
No 56
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=23.23 E-value=97 Score=25.34 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=16.7
Q ss_pred EEEeccCCHHHHHHHHHhcCCeeeec
Q 028985 38 VAVSKTKPVSLIRQVYDAGHRSFGEN 63 (200)
Q Consensus 38 ~aVvKahg~~~i~~~~~~G~~~fgva 63 (200)
-+++-.|..+++..+.++|++.+|+|
T Consensus 171 ~~lvevh~~eEl~~A~~~ga~iIGin 196 (272)
T 3tsm_A 171 DALIEVHDEAEMERALKLSSRLLGVN 196 (272)
T ss_dssp EEEEEECSHHHHHHHTTSCCSEEEEE
T ss_pred eEEEEeCCHHHHHHHHhcCCCEEEEC
Confidence 34445577666655666777777776
No 57
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=22.48 E-value=2.8e+02 Score=21.69 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhcCCeeee------------------------ccHHHHHHHhcCCCCCccccc-cCCCChHHHHhHhcc
Q 028985 44 KPVSLIRQVYDAGHRSFGE------------------------NYVQEIVDKAPQLPEDIKWHF-VGHLQSNKAKTLLGG 98 (200)
Q Consensus 44 hg~~~i~~~~~~G~~~fgv------------------------a~v~Ea~~lr~~~~~~i~~~~-iG~~~~~~~~~~~~~ 98 (200)
-|...++.+..+|+..+.+ .+++.+.+....+...+.+.. -+.+....+..++.
T Consensus 42 ~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~- 120 (249)
T 1jw9_B 42 LGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA- 120 (249)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHh-
Confidence 4445557788899877654 334444332222211222222 23345445556663
Q ss_pred CCCccEE-EeeCcHHHHHHHHHHHHhcCC
Q 028985 99 VPNLDMV-EGVGNEKIANHLDKAVSNLGR 126 (200)
Q Consensus 99 ~~~~~~~-~sv~s~~~a~~l~~~a~~~g~ 126 (200)
.++++ .+.++.+.-..+++.|.+.|+
T Consensus 121 --~~DvVi~~~d~~~~~~~l~~~~~~~~~ 147 (249)
T 1jw9_B 121 --EHDLVLDCTDNVAVRNQLNAGCFAAKV 147 (249)
T ss_dssp --TSSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred --CCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 36654 567888877889999988775
No 58
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=22.12 E-value=47 Score=28.88 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=36.8
Q ss_pred CeeEEEEEeCCCCCCcCCCC--hh--hHHHHHHHHHhcCCCeEEeEEEeecCC-CCC--CchHHHHHHHHHHHhcccc
Q 028985 128 PLKVLVQVNTSGEESKSGID--PS--SCLGIVEHVRLRCPNLEFSGLMTIGMP-DYT--STPENFRVMDFSFRRAHVL 198 (200)
Q Consensus 128 ~~~v~lkvdtG~em~R~G~~--~e--~~~~~~~~i~~~~~~l~~~GlmTh~a~-~~~--~~~~~F~~l~~~~~~~~~~ 198 (200)
+-+.+.++|-- |+++||+ |+ ...+..+.|. .....-+..+||=+-. .++ ...+.|+++.+.+.+.+.-
T Consensus 15 ~~~~~~~~~~~--M~~LGiSvYp~~~~~~~~~~Yi~-~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~ 89 (385)
T 1x7f_A 15 TENLYFQSNAM--ERKLGISLYPEHSTKEKDMAYIS-AAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNME 89 (385)
T ss_dssp ----------C--CCEEEEEECGGGSCHHHHHHHHH-HHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCE
T ss_pred cCChhhhHHHH--HHheEEEEcCCCCCHHHHHHHHH-HHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCE
Confidence 44567888888 9999975 33 3455556665 5556777888886632 222 4568899999998887653
No 59
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=21.68 E-value=3.3e+02 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHhcCCCeEEeEEEeecCCCC
Q 028985 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
.+|+..++-.+ ..|.+++.||-|-+++..
T Consensus 14 iDDa~Al~~al--~~p~i~l~gIt~v~GN~~ 42 (313)
T 1q8f_A 14 HDDAIAIMMAA--KHPAIDLLGITIVAGNQT 42 (313)
T ss_dssp HHHHHHHHHHH--HCTTEEEEEEEECSSSSC
T ss_pred hHHHHHHHHHH--hCCCCEEEEEEEccCCCC
Confidence 58888887555 569999999999887654
No 60
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=21.05 E-value=3.5e+02 Score=23.75 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=62.9
Q ss_pred CcEEEEEecc-----------CCHHHHHHHHHhcCCeeee--------ccHHHHHHHhcCCCCC-ccccccCCCChHHHH
Q 028985 34 QIRVVAVSKT-----------KPVSLIRQVYDAGHRSFGE--------NYVQEIVDKAPQLPED-IKWHFVGHLQSNKAK 93 (200)
Q Consensus 34 ~v~l~aVvKa-----------hg~~~i~~~~~~G~~~fgv--------a~v~Ea~~lr~~~~~~-i~~~~iG~~~~~~~~ 93 (200)
++.+++=+|- .....+...++.|+..+.| +.++.....|+....| ++=.|| +.+-++.
T Consensus 47 ~~~vIaEvKraSPSkG~i~~~~~~~~iA~~y~~~A~~IsvLTd~~~F~gs~~dL~~vr~~v~lPvLrKDFI--~d~~Qi~ 124 (452)
T 1pii_A 47 RTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFI--IDPYQIY 124 (452)
T ss_dssp SCEEEEEECSEETTTEESCSSCCHHHHHHHHTTTCSEEEEECCSTTTCCCTTHHHHHHHHCCSCEEEESCC--CSHHHHH
T ss_pred CCceEEEecCCCCCCCccCCCCCHHHHHHHHHhhCcEEEEEecccccCCCHHHHHHHHHhcCCCeEEEecc--CCHHHHH
Confidence 4678998884 2234455566666989999 8888888888775555 333354 2333343
Q ss_pred hHhccCCCccEE---EeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC
Q 028985 94 TLLGGVPNLDMV---EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE 140 (200)
Q Consensus 94 ~~~~~~~~~~~~---~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e 140 (200)
++.. -..+.+ .++-+.+.++.|-+.|++.| +.++++|.+-.|
T Consensus 125 ea~~--~GAD~ILLi~a~l~~~~l~~l~~~a~~lg---m~~LvEvh~~eE 169 (452)
T 1pii_A 125 LARY--YQADACLLMLSVLDDDQYRQLAAVAHSLE---MGVLTEVSNEEE 169 (452)
T ss_dssp HHHH--TTCSEEEEETTTCCHHHHHHHHHHHHHTT---CEEEEEECSHHH
T ss_pred HHHH--cCCCEEEEEcccCCHHHHHHHHHHHHHcC---CeEEEEeCCHHH
Confidence 3321 114444 44455577888888888776 478888887633
No 61
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.04 E-value=57 Score=19.00 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=12.4
Q ss_pred CcCCCChhhHHHHHHHH
Q 028985 142 SKSGIDPSSCLGIVEHV 158 (200)
Q Consensus 142 ~R~G~~~e~~~~~~~~i 158 (200)
.+.||+|+++..+-..+
T Consensus 13 kkegfspeelaalesel 29 (48)
T 1g6u_A 13 KKEGFSPEELAALESEL 29 (48)
T ss_dssp HHTTCSHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 46799999887765544
No 62
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=20.86 E-value=3.3e+02 Score=21.86 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=37.0
Q ss_pred eEEEEEeCCCC-----CCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHhcc
Q 028985 130 KVLVQVNTSGE-----ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRRAH 196 (200)
Q Consensus 130 ~v~lkvdtG~e-----m~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~~~ 196 (200)
.+++-+++|.+ |+| |...+++.+.++.+.+..+++.+..-+..+-.. +..+.|.+..++.++.+
T Consensus 116 ~l~i~lqs~s~~vl~~m~r-~~t~e~~~~~i~~l~~~~~gi~i~~~~IvG~Pg--Et~ed~~~t~~~l~~l~ 184 (304)
T 2qgq_A 116 YFDVPVQHGSDKILKLMGR-TKSSEELKKMLSSIRERFPDAVLRTSIIVGFPG--ETEEDFEELKQFVEEIQ 184 (304)
T ss_dssp EEECCCBCSCHHHHHHTTC-CSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTT--CCHHHHHHHHHHHHHHC
T ss_pred EEEEecccCCHHHHHHhCC-CCCHHHHHHHHHHHHhhCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHHHcC
Confidence 46666777632 556 456778888888776234777664332222112 23556777777666543
No 63
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=20.45 E-value=2.9e+02 Score=22.48 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHhcCCCeEEeEEEeecCCCCC-CchHHHHHHHHHHHh
Q 028985 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-STPENFRVMDFSFRR 194 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~-~~~~~F~~l~~~~~~ 194 (200)
.+|+..++-.+ ..|.+++.||.|-+++..- ....+-..+.+.+.+
T Consensus 12 iDDa~Al~~al--~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~ 57 (312)
T 2c40_A 12 VDDLVSLFLLL--QMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGK 57 (312)
T ss_dssp HHHHHHHHHHT--TCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHH--hCCCCEEEEEEEecCCCcHHHHHHHHHHHHHHcCC
Confidence 57888876444 6689999999999876542 222334445555543
No 64
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=20.45 E-value=3.5e+02 Score=22.09 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCC-chHHHHHHHHHHHh
Q 028985 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS-TPENFRVMDFSFRR 194 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~-~~~~F~~l~~~~~~ 194 (200)
.+|+..++-.+ ..|.+++.||.|-+++..-+ ...+-..+.+.+.+
T Consensus 12 iDDa~AL~~al--~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~ 57 (314)
T 2mas_A 12 LDDAVAILLAH--GNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGI 57 (314)
T ss_dssp HHHHHHHHHHH--HCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHH--hCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCC
Confidence 58888887555 56999999999988765421 22333444444443
No 65
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=20.39 E-value=2.1e+02 Score=21.99 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCeeeec--------c----HHHHHHHhcCCCCCccccccCCCChHHHHhHhccCCCccEE--EeeCcHH
Q 028985 47 SLIRQVYDAGHRSFGEN--------Y----VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMV--EGVGNEK 112 (200)
Q Consensus 47 ~~i~~~~~~G~~~fgva--------~----v~Ea~~lr~~~~~~i~~~~iG~~~~~~~~~~~~~~~~~~~~--~sv~s~~ 112 (200)
+.++.+.++|++++..- . ++.+..+++..+.++.-|++..-+.+.++.+.+ -..+.+ |.-.+.+
T Consensus 23 ~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~--agad~v~vH~~~~~~ 100 (228)
T 1h1y_A 23 AEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAK--AGASGFTFHIEVSRD 100 (228)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHH--HTCSEEEEEGGGCTT
T ss_pred HHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHH--cCCCEEEECCCCccc
Confidence 34567778888875443 1 466666666543344335544322233444442 125555 4433333
Q ss_pred HHHHHHHHHHhcCC
Q 028985 113 IANHLDKAVSNLGR 126 (200)
Q Consensus 113 ~a~~l~~~a~~~g~ 126 (200)
.+...-+.+++.|.
T Consensus 101 ~~~~~~~~i~~~g~ 114 (228)
T 1h1y_A 101 NWQELIQSIKAKGM 114 (228)
T ss_dssp THHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 21333444444554
No 66
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=20.26 E-value=3.4e+02 Score=22.98 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=28.2
Q ss_pred eeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEeecCCCC
Q 028985 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 129 ~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
.+|+|..|+| .+|+..++-.+ ..|.+++.||.|-+++..
T Consensus 7 ~kvIiD~D~G---------~DDa~Al~~al--~~p~i~l~gIt~v~GN~~ 45 (360)
T 3fz0_A 7 RKLIIDTDCG---------GDDAIAIMLAM--TQPDVEVIAITVVWGNVE 45 (360)
T ss_dssp EEEEEEECCC---------HHHHHHHHHHH--TSTTEEEEEEEECCSSSC
T ss_pred ceEEEECCCC---------hHHHHHHHHHH--hCCCCEEEEEEEecCCCC
Confidence 4566555544 47887776655 569999999999987654
Done!