Query 028985
Match_columns 200
No_of_seqs 149 out of 1049
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 08:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028985hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ct5a_ c.1.6.2 (A:) "Hypothet 100.0 6.5E-37 4.7E-41 254.2 22.1 187 7-194 10-206 (244)
2 d1vfsa2 c.1.6.1 (A:13-249) Ala 100.0 8.3E-34 6.1E-38 234.4 17.9 171 13-197 1-187 (237)
3 d1bd0a2 c.1.6.1 (A:12-244) Ala 100.0 1.5E-32 1.1E-36 226.6 16.9 170 13-196 2-185 (233)
4 d1rcqa2 c.1.6.1 (A:8-233) Alan 100.0 1.5E-31 1.1E-35 219.6 16.9 163 13-191 2-176 (226)
5 d1hkva2 c.1.6.1 (A:46-310) Dia 98.8 5.7E-08 4.2E-12 79.1 15.6 151 14-176 2-171 (265)
6 d1twia2 c.1.6.1 (A:50-313) Dia 98.8 5.4E-07 3.9E-11 73.0 19.3 159 6-176 1-178 (264)
7 d1f3ta2 c.1.6.1 (A:44-283) Euk 98.7 5.4E-07 3.9E-11 72.2 16.4 152 13-177 1-158 (240)
8 d7odca2 c.1.6.1 (A:44-283) Euk 98.4 5.2E-06 3.8E-10 66.0 15.2 146 13-176 1-157 (240)
9 d1knwa2 c.1.6.1 (A:32-278) Dia 98.2 8E-06 5.8E-10 65.3 12.1 143 14-177 2-164 (247)
10 d2nlya1 c.6.2.7 (A:31-254) Hyp 63.9 18 0.0013 26.9 8.6 93 102-197 26-127 (224)
11 d1dxea_ c.1.12.5 (A:) 2-dehydr 48.2 50 0.0036 24.7 10.4 114 37-158 67-199 (253)
12 d1j5ya2 d.94.2.1 (A:68-174) Pu 40.6 14 0.00099 24.7 3.7 90 104-200 10-106 (107)
13 d1a53a_ c.1.2.4 (A:) Indole-3- 35.1 83 0.0061 23.5 9.6 100 34-138 44-162 (247)
14 d1x7fa2 c.1.8.12 (A:1-244) Out 32.5 10 0.00076 29.0 2.3 57 141-198 2-65 (244)
15 d1pkla2 c.1.12.1 (A:1-87,A:187 31.4 46 0.0033 25.2 6.0 53 16-71 62-120 (258)
16 d1e0ta2 c.1.12.1 (A:1-69,A:168 30.2 50 0.0037 24.8 6.0 148 15-174 44-220 (246)
17 d1ub3a_ c.1.10.1 (A:) Deoxyrib 28.4 39 0.0029 24.8 5.0 51 110-167 130-180 (211)
18 d2masa_ c.70.1.1 (A:) Inosine- 28.0 97 0.0071 23.3 7.6 28 149-178 13-40 (313)
19 d1xg5a_ c.2.1.2 (A:) Putative 24.8 1.2E+02 0.0084 22.1 7.3 64 92-166 27-91 (257)
20 d1q8fa_ c.70.1.1 (A:) Pyrimidi 22.8 1.4E+02 0.01 22.2 7.7 43 148-194 12-54 (308)
21 d2ns1b1 d.58.5.1 (B:1-112) PII 21.5 36 0.0026 22.2 3.2 30 36-65 3-33 (112)
22 d1p1ma2 c.1.9.9 (A:50-330) Hyp 20.4 1.3E+02 0.0098 21.5 6.9 90 102-200 57-149 (281)
23 d1zj8a1 d.58.36.1 (A:327-406) 20.2 43 0.0031 20.1 3.2 47 109-159 27-73 (80)
No 1
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=6.5e-37 Score=254.19 Aligned_cols=187 Identities=36% Similarity=0.577 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCCCCcEEEEEeccCCHHHHHHHHHhcCCeeeeccHHHHHHHhcCCCCCcccccc
Q 028985 7 EGAAVTALRSVLHRVRQAAER--SGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (200)
Q Consensus 7 ~~~l~~nl~~i~~ni~~~~~~--~~r~~~~v~l~aVvKahg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~~~~~i~~~~i 84 (200)
.+.|..||+.|+++|...++. ++|++.+|+|+||||+++.+.|+.++++|++.|||||+||+.++...++.++.||||
T Consensus 10 ~~ei~~~~~~i~~~I~~~~~~~~~~r~~~~V~LiaVsK~~~~~~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~i~wHfI 89 (244)
T d1ct5a_ 10 KTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFI 89 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEEECCCCHHHHHHHHHcCCchhhcchhhhhhhhccccccceeeeee
Confidence 378999999999999988875 789889999999999999999999999999999999999999998888888999999
Q ss_pred CCCChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCC--CCeeEEEEEeCCCCCCcCCCChh-hHHHHHHHHH-h
Q 028985 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR--KPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVR-L 160 (200)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~--~~~~v~lkvdtG~em~R~G~~~e-~~~~~~~~i~-~ 160 (200)
|++|+||++.+++ +..+++++||||.+.++.|++.+.+.++ .++.|+||||+++|.+|.|+.|+ ++.++++.+. +
T Consensus 90 G~LQsNKvk~i~~-~~~~~~I~svds~kla~~l~~~~~~~~~~~~~~~~~iQVNi~~e~~KsG~~~~~~l~~~~~~~~~~ 168 (244)
T d1ct5a_ 90 GGLQTNKCKDLAK-VPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSE 168 (244)
T ss_dssp SCCCGGGHHHHHH-CTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHST
T ss_pred cccccchHHHHHH-hcccccccccccccchhHHHHHHhhhhcccCcceeEEeeecccccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999999983 1224679999999999999988765432 16789999999999999999885 7888888773 1
Q ss_pred cCCCeEEeEEEeecCCCC----CCchHHHHHHHHHHHh
Q 028985 161 RCPNLEFSGLMTIGMPDY----TSTPENFRVMDFSFRR 194 (200)
Q Consensus 161 ~~~~l~~~GlmTh~a~~~----~~~~~~F~~l~~~~~~ 194 (200)
.+++|++.||||++|.+. .+....|..+.+++++
T Consensus 169 ~~~~l~l~GLM~i~p~~~~~~~~~~~~~F~~l~~l~~~ 206 (244)
T d1ct5a_ 169 ECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKK 206 (244)
T ss_dssp TCCSEEEEEEECCCCCC---------HHHHHHHHHHHH
T ss_pred hcccchhccccccccCCCCchhhHHHHHHHHHHHHHHH
Confidence 689999999999998642 2345679999887764
No 2
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=100.00 E-value=8.3e-34 Score=234.42 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
||++|++|++.+++.++ +.+++||||+ ||+.+| +.+.++|+++|||++++||+++|+. +..+| .+++.
T Consensus 1 DL~al~~N~~~l~~~~~----~~~i~aVVKAnAYGhG~~~ia~~l~~~g~~~f~Va~~~EA~~lR~~g~~~~I--l~l~~ 74 (237)
T d1vfsa2 1 DLDAVRANVRALRARAP----RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRI--MCWLW 74 (237)
T ss_dssp EHHHHHHHHHHHHTTST----TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEE--EECCC
T ss_pred CHHHHHHHHHHHHHhCC----CCeEEEEEeeccCcCCHHHHHHHHHHcCCCEEEEeecchHHHHHHhccCCCe--eeccC
Confidence 47888888888877763 4689999998 999776 8889999999999999999999999 55565 34465
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHH---HHhcCC
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEH---VRLRCP 163 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~---i~~~~~ 163 (200)
...+.+..+++ ++++++|+|.++++.+++.++..++ +++|||||||| |+|+||.|+|+.++++. +. ..+
T Consensus 75 ~~~~~~~~~~~----~~i~~~i~s~~~l~~l~~~a~~~~~-~~~vhLkiDTG--M~RlG~~~~e~~~l~~~~~~~~-~~~ 146 (237)
T d1vfsa2 75 TPGGPWREAIE----TDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG--LGRNGCQPADWAELVGAAVAAQ-AEG 146 (237)
T ss_dssp CTTCCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS--CCSSSBCHHHHHHHHHHHHHHH-HTT
T ss_pred CChHHHHHHHH----hcccceeccHHHHHHHHHHHHhcCC-CeeEEEEecCC--CCCCCCChhHHHHHHHHHHhhh-ccC
Confidence 66667777874 7899999999999999999998897 99999999999 99999999888887664 55 789
Q ss_pred CeEEeEEEeecCCCCC-------CchHHHHHHHHHHHhccc
Q 028985 164 NLEFSGLMTIGMPDYT-------STPENFRVMDFSFRRAHV 197 (200)
Q Consensus 164 ~l~~~GlmTh~a~~~~-------~~~~~F~~l~~~~~~~~~ 197 (200)
++++.|+||||+++|+ .|...|.++.+.++..++
T Consensus 147 ~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~ 187 (237)
T d1vfsa2 147 TVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGV 187 (237)
T ss_dssp SEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceeeeeeecccccccchhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998765 277889999988877643
No 3
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=1.5e-32 Score=226.59 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGH 86 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~ 86 (200)
|+++|++|++.+++.++ +++++++|||+ ||..++ +.++++|+++|||++++||+++|+. +..+| .++|+
T Consensus 2 dl~al~~N~~~ir~~~~---~~~~i~aVVKAnAYGhG~~~ia~~l~~~G~~~f~Va~i~EA~~LR~~g~~~~I--lvl~~ 76 (233)
T d1bd0a2 2 DLDAIYDNVENLRRLLP---DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPI--LVLGA 76 (233)
T ss_dssp EHHHHHHHHHHHHHHSC---TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCE--EECSC
T ss_pred CHHHHHHHHHHHHHhCC---CCCeEEEEEeeccCcCCHHHHHHHHHhcCcCcchhhhhccHHHHHHhCCcceE--eeccC
Confidence 67888888888877764 46899999998 999887 7788999999999999999999999 55676 45677
Q ss_pred CChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhh-HHHHHHHHHhcCCCe
Q 028985 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS-CLGIVEHVRLRCPNL 165 (200)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~-~~~~~~~i~~~~~~l 165 (200)
...++...+++ ++++++|++.++++.++..+ +.++ +++|||||||| |+|+||.+++ ...+++.+. +.+++
T Consensus 77 ~~~~~~~~~~~----~~i~~~v~~~~~~~~~~~~~-~~~~-~~~vhLkvDTG--M~RlG~~~~e~~~~~~~~~~-~~~~l 147 (233)
T d1bd0a2 77 SRPADAALAAQ----QRIALTVFRSDWLEEASALY-SGPF-PIHFHLKMDTG--MGRLGVKDEEETKRIVALIE-RHPHF 147 (233)
T ss_dssp CCGGGHHHHHH----TTEEEEECCHHHHHHHHHHC-CCSS-CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHH-HSTTE
T ss_pred CccHHHHHhhh----ccccceeehHHHhhhhhhhh-ccCc-ceEEEEEeccc--cccCCCChHHHHHHHHHHHh-ccccc
Confidence 88888888773 78999999999998887654 4566 89999999999 9999998854 566677777 89999
Q ss_pred EEeEEEeecCCCCCC-------chHHHHHHHHHHHhcc
Q 028985 166 EFSGLMTIGMPDYTS-------TPENFRVMDFSFRRAH 196 (200)
Q Consensus 166 ~~~GlmTh~a~~~~~-------~~~~F~~l~~~~~~~~ 196 (200)
++.|+||||+++|++ |...|.++.+.+...+
T Consensus 148 ~i~Gi~THla~ad~~~~~~~~~q~~~f~~~~~~l~~~~ 185 (233)
T d1bd0a2 148 VLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRP 185 (233)
T ss_dssp EEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCC
T ss_pred chhhhhhhhcCCCccchhHHHHHHHHHHHHHHhccccc
Confidence 999999999998752 5566666665544333
No 4
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.97 E-value=1.5e-31 Score=219.63 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----CCHHHHHHHHHhcCCeeeeccHHHHHHHhcC-CCCCccccccCCC
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLIRQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHL 87 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKa----hg~~~i~~~~~~G~~~fgva~v~Ea~~lr~~-~~~~i~~~~iG~~ 87 (200)
||++|++|++.+++.. +.++++|||+ ||+.++..++++|+++|||++++||+++|+. +..|| +.+-|..
T Consensus 2 dl~al~~N~~~ir~~~-----~~~i~aVVKanAYGhG~~~va~~l~~g~~~faVa~~~Ea~~LR~~g~~~~I-lvl~~~~ 75 (226)
T d1rcqa2 2 DLQALRHNYRLAREAT-----GARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPI-LLLEGFF 75 (226)
T ss_dssp EHHHHHHHHHHHHHHH-----CSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCSCE-EETTCCS
T ss_pred CHHHHHHHHHHHHhcc-----CCcEEEEEeeccccCcHHHHHHHHHhccchhhhhhhccHHHHHHcCCCCce-EEecccC
Confidence 5777888887776654 3589999997 9998874456789999999999999999999 55576 2233555
Q ss_pred ChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEE
Q 028985 88 QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~ 167 (200)
+.+....+++ +++++++++.++++.++..+ .++ +++|||||||| |+|+||.++|+.++++.+. .++++++
T Consensus 76 ~~~~~~~~~~----~~i~~~i~~~~~~~~~~~~~--~~~-~~~vhlkiDTG--M~RlG~~~~e~~~~~~~~~-~~~~l~~ 145 (226)
T d1rcqa2 76 EASELELIVA----HDFWCVVHCAWQLEAIERAS--LAR-PLNVWLKMDSG--MHRVGFFPEDFRAAHERLR-ASGKVAK 145 (226)
T ss_dssp SGGGHHHHHH----TTEEEEECSHHHHHHHHHCC--CSS-CEEEEEEBCSS--SCSSSBCHHHHHHHHHHHH-HTTCEEE
T ss_pred CHHHHHHHHh----ccccceeccHHHHHHHHHHh--hcc-ceeEEEEEecc--ccccccChHHHHHHHHHhh-ccccccc
Confidence 6667777773 78999999999999887653 466 89999999999 9999999999999999998 9999999
Q ss_pred eEEEeecCCCCC-------CchHHHHHHHHH
Q 028985 168 SGLMTIGMPDYT-------STPENFRVMDFS 191 (200)
Q Consensus 168 ~GlmTh~a~~~~-------~~~~~F~~l~~~ 191 (200)
.|+||||+++|+ .|.+.|.++.+.
T Consensus 146 ~gi~tHfa~ad~~~~~~~~~Q~~~F~~~~~~ 176 (226)
T d1rcqa2 146 IVMMSHFSRADELDCPRTEEQLAAFSAASQG 176 (226)
T ss_dssp EEEECCCSSTTCTTCTHHHHHHHHHHHHHTT
T ss_pred eeccccccccccchhhHHHHHHHHHHHHHhc
Confidence 999999998764 266788877654
No 5
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.84 E-value=5.7e-08 Score=79.10 Aligned_cols=151 Identities=20% Similarity=0.176 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCCC-h
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHLQ-S 89 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~~-~ 89 (200)
.+.|++|++.+++..+ .++++.--+|+-....+ +.+.+.|+ +|=|++..|...-... .+. +| .+-|+.. .
T Consensus 2 ~~~lr~~~~~~~~af~---~~~~i~YA~KaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~~~~I--i~~gp~K~~ 75 (265)
T d1hkva2 2 EDDFRSRCRETAAAFG---SGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFPPERI--TLHGNNKSV 75 (265)
T ss_dssp HHHHHHHHHHHHHHTT---SGGGBEEEGGGSCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGE--EECCSSCCH
T ss_pred HHHHHHHHHHHHHhcC---CCCeEEEEeccCCCHHHHHHHHHcCC-CeEEeChhhHHHHHHcCCCHHHh--eeccccchh
Confidence 3566777777776664 36788888999776555 88889996 7889999999765555 433 36 4567765 4
Q ss_pred HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe------------CCCCCCcCCCChhhHHH--H
Q 028985 90 NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDPSSCLG--I 154 (200)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd------------tG~em~R~G~~~e~~~~--~ 154 (200)
+.++.+++ ..+ ..++||.+.++.+.+.+...++ ..+|.+-+| ||+..+|.|+.+++... .
T Consensus 76 ~~l~~Al~----~gv~~i~vDs~~El~~i~~~~~~~~~-~~~v~lr~~p~~~~~~~~~~~~g~~~skFG~~~~~~~~~~~ 150 (265)
T d1hkva2 76 SELTAAVK----AGVGHIVVDSMTEIERLDAIAGEAGI-VQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAA 150 (265)
T ss_dssp HHHHHHHH----HTCCCEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSEEEEETEEEECSSCCSSSSEESTTSHHHHH
T ss_pred hhHHHHHh----cCcccccccchHHHHHHHHHhhhccc-cccccccccceeccccccceeccccccccccchhhhHHHHH
Confidence 55666663 343 4689999999999999888887 889988776 66778999998876443 3
Q ss_pred HHHHHhcCCCeEEeEEEeecCC
Q 028985 155 VEHVRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 155 ~~~i~~~~~~l~~~GlmTh~a~ 176 (200)
+..+. ..+++++.|+-.|.++
T Consensus 151 ~~~~~-~~~~l~~~GlH~HvGS 171 (265)
T d1hkva2 151 VRRVF-ATDHLRLVGLHSHIGS 171 (265)
T ss_dssp HHHHH-HCSSEEEEEEECCCEE
T ss_pred HHHHH-hhcCceeeeeeeeecc
Confidence 45566 7899999999999865
No 6
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.77 E-value=5.4e-07 Score=73.01 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-Ccccc
Q 028985 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (200)
Q Consensus 6 ~~~~l~~nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~ 82 (200)
++..|+.|+.++++.++......|. +..+.=-+|+-+...+ +.+.+.|+ +|=|++..|....++. .+. .| .
T Consensus 1 s~~~i~~n~~~~~~af~~~~~~~g~---~~~i~YAvKaN~~~~vl~~l~~~G~-g~Dv~S~~El~~al~~G~~~~~I--~ 74 (264)
T d1twia2 1 SEEQIKINYNRYIEAFKRWEEETGK---EFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVPSKKI--V 74 (264)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHSC---CEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeccCCCHHHHHHHHHcCC-CeeeecccHHHHHhhcCCCcccc--c
Confidence 4678999999999999988887764 5778788899877665 88888996 7889999999876666 443 36 4
Q ss_pred ccCCCCh-HHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCC------------CCcCCCCh
Q 028985 83 FVGHLQS-NKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------------ESKSGIDP 148 (200)
Q Consensus 83 ~iG~~~~-~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~e------------m~R~G~~~ 148 (200)
+-|+..+ +.+..+++ .++ ..++||.+.++.+.+.+.+.+. +.+|.+-++.+-. .+|.|+.+
T Consensus 75 ~~gp~k~~~~i~~a~~----~gv~~~~~ds~~el~~i~~~a~~~~~-~~~v~~Ri~~~~~~~~~~~~~~~~~~skfG~~~ 149 (264)
T d1twia2 75 FNGNCKTKEEIIMGIE----ANIRAFNVDSISELILINETAKELGE-TANVAFRINPNVNPKTHPKISTGLKKNKFGLDV 149 (264)
T ss_dssp ECCSSCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECCCCTTTCHHHHHHHHHSSCSEES
T ss_pred cCCchhHHHHHHHhhc----ceeeeeeccchHHHHHHHHHHHHcCC-CcccccccccCCCcccccccccccccccccccH
Confidence 5677654 55666663 343 4679999999999999998887 8999999876522 25899988
Q ss_pred hhHHHH--HHHHHhcCCCeEEeEEEeecCC
Q 028985 149 SSCLGI--VEHVRLRCPNLEFSGLMTIGMP 176 (200)
Q Consensus 149 e~~~~~--~~~i~~~~~~l~~~GlmTh~a~ 176 (200)
++...+ ..... ..+++++.|+-.|.++
T Consensus 150 ~~~~~~~~~~~~~-~~~~l~~~GlH~H~gS 178 (264)
T d1twia2 150 ESGIAMKAIKMAL-EMEYVNVVGVHCHIGS 178 (264)
T ss_dssp TTSHHHHHHHHHH-HCSSEEEEEEECCCCS
T ss_pred HHHHHHHHHHHHH-Hhcccccccceeeehh
Confidence 765444 33444 6789999999999876
No 7
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]}
Probab=98.68 E-value=5.4e-07 Score=72.17 Aligned_cols=152 Identities=12% Similarity=0.073 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+|+.|.++++++++.. +++++.=-+|+-+...+ +.+.+.|+ +|=|++..|...-+.. .+. .| .|-|+. .
T Consensus 1 dl~~i~~~~~~~~~~~----p~v~~~YA~KaN~~~~il~~l~~~g~-g~dv~S~~El~~al~~G~~~~~I--if~g~~k~ 73 (240)
T d1f3ta2 1 DLGDIVRKHETWKKCL----PRVTPFYAVKCNDDWRVLGTLAALGT-GFDCASNTEIQRVRGIGVPPEKI--IYANPCKQ 73 (240)
T ss_dssp EHHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGE--EECCSSCC
T ss_pred CHHHHHHHHHHHHHHC----CCCEEEEEeccCCCHHHHHHHHHcCC-CeEeccchhHHHHHHcCCCccce--eeccccch
Confidence 3678888888888877 36888888899776555 77888885 7999999998876666 433 46 556776 4
Q ss_pred hHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCC-CeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 89 SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRK-PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~-~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.++++.+++ ..+ +.+++|.+.++.+.+.+...+.. .+..+..+.+|+..+|.|+.++++.++++.+. + .+++
T Consensus 74 ~~ei~~a~~----~g~~~~~~ds~~el~~i~~~~~~~~~~~ri~~~~~~~~~~~~~kFGi~~~~~~~~~~~~~-~-~~~~ 147 (240)
T d1f3ta2 74 ISHIRYARD----SGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAK-K-LNID 147 (240)
T ss_dssp HHHHHHHHH----TTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------CCSCBCHHHHHHHHHHHH-H-TTCE
T ss_pred hHHHHHHHH----hcccceeeeehhhhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHh-c-cccc
Confidence 567777774 233 57899999999888765433210 12223334556667899999999999988876 5 4799
Q ss_pred EeEEEeecCCC
Q 028985 167 FSGLMTIGMPD 177 (200)
Q Consensus 167 ~~GlmTh~a~~ 177 (200)
+.||-.|.++.
T Consensus 148 l~GlH~H~GS~ 158 (240)
T d1f3ta2 148 VTGVSFHVGSG 158 (240)
T ss_dssp EEEEECCCCSC
T ss_pred eeeeeeehhhc
Confidence 99999999753
No 8
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.40 E-value=5.2e-06 Score=66.03 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-CccccccCCC-C
Q 028985 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWHFVGHL-Q 88 (200)
Q Consensus 13 nl~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-~i~~~~iG~~-~ 88 (200)
+|+.|.+++++..+.. +++++.=-+|+-+...+ +.+.+.|+ +|=|++..|......+ ++. .| .+-|+. .
T Consensus 1 dl~~i~~~~~~~~~~~----p~v~~~YA~KaN~~~~il~~l~~~G~-g~dv~S~~El~~a~~aG~~~~~I--v~~g~~K~ 73 (240)
T d7odca2 1 DLGDILKKHLRWLKAL----PRVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVPAERV--IYANPCKQ 73 (240)
T ss_dssp EHHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGE--EECCSSCC
T ss_pred CHHHHHHHHHHHHHhC----CCCEEEEEeccCCCHHHHHHHHHcCC-CeEeecchHHHHHHhcCCCccce--EecCCccc
Confidence 3678888888888777 46899899999776555 77888884 6999999998876666 443 36 456876 4
Q ss_pred hHHHHhHhccCCCccE-EEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEe------CCCCCCcCCCChhhHHHHHHHHHhc
Q 028985 89 SNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------TSGEESKSGIDPSSCLGIVEHVRLR 161 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvd------tG~em~R~G~~~e~~~~~~~~i~~~ 161 (200)
.+.++.+++ .++ +.++++.+.++.+.+.+. ..++.+-++ +|+.-+|.|+.++++..+++.+.
T Consensus 74 ~~~l~~a~~----~g~~~~~~ds~~el~~i~~~~~-----~~~v~~ri~~~~~~~~~~~~~kfG~~~~~~~~~~~~~~-- 142 (240)
T d7odca2 74 VSQIKYAAS----NGVQMMTFDSEIELMKVARAHP-----KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAK-- 142 (240)
T ss_dssp HHHHHHHHH----TTCCEEEECSHHHHHHHHHHCT-----TCEEEEEBCC-----------CCCBCHHHHHHHHHHHH--
T ss_pred hHHHHHHHH----hhcccccchhHHHHHHHHHhcc-----cccccccccccccccccCcCccccccHHHHHHHHHHhh--
Confidence 567777774 333 578999988888877643 344555554 44456789999888888887664
Q ss_pred CCCeEEeEEEeecCC
Q 028985 162 CPNLEFSGLMTIGMP 176 (200)
Q Consensus 162 ~~~l~~~GlmTh~a~ 176 (200)
.+++++.|+-.|.++
T Consensus 143 ~~~l~l~GlH~H~GS 157 (240)
T d7odca2 143 ELNIDVIGVSFHVGS 157 (240)
T ss_dssp HTTCEEEEEECCCCS
T ss_pred hcCceEEeecccccc
Confidence 468999999999975
No 9
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=98.21 E-value=8e-06 Score=65.28 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEeccCCHHHH-HHHHHhcCCeeeeccHHHHHHHhcC-CCC-----CccccccCC
Q 028985 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-----DIKWHFVGH 86 (200)
Q Consensus 14 l~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg~~~i-~~~~~~G~~~fgva~v~Ea~~lr~~-~~~-----~i~~~~iG~ 86 (200)
.+.|+++++.+++. ..+.=-+|+-+...+ +.+.+.|+ +|=|++..|......+ ++. .| .+-|+
T Consensus 2 ~~~ir~~~~~l~~~-------~~v~YA~KaN~~~~vl~~l~~~G~-g~dv~S~~El~~al~~G~~~~~~~~~I--i~~g~ 71 (247)
T d1knwa2 2 AQIIRRQIAALKQF-------DVVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDI--VFTAD 71 (247)
T ss_dssp HHHHHHHHHTTTTS-------SEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSE--EEEES
T ss_pred HHHHHHHHHHhcCC-------CEEEEEeccCCCHHHHHHHHHcCC-CEEEeCHHHHHHHHHhCCCcccChhhe--eecCC
Confidence 34566666654311 246566799777655 88889997 7999999998865555 321 25 34465
Q ss_pred C-ChHHHHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeC------------CCCCCcCCCChhhHHH
Q 028985 87 L-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSCLG 153 (200)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdt------------G~em~R~G~~~e~~~~ 153 (200)
. ....++.+++ .++...+||.+.++.|.+.++ ..+|.+-|+. ++..+|.|+.++++..
T Consensus 72 ~k~~~~l~~a~~----~~~~i~~ds~~el~~l~~~~~-----~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~ 142 (247)
T d1knwa2 72 VIDQATLERVSE----LQIPVNAGSVDMLDQLGQVSP-----GHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPA 142 (247)
T ss_dssp CCCHHHHHHHHH----HTCCEEESSHHHHHHHHHHST-----TCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHH
T ss_pred cchhhHHHHHHH----HhhhhchhhhHHHHHHHhhcc-----cchhheeeeccccccccccccccccccccccchhhhhh
Confidence 4 4566777763 455567999999999987764 3344445543 3445899999999998
Q ss_pred HHHHHHhcCCCeEEeEEEeecCCC
Q 028985 154 IVEHVRLRCPNLEFSGLMTIGMPD 177 (200)
Q Consensus 154 ~~~~i~~~~~~l~~~GlmTh~a~~ 177 (200)
+++.+. . .++++.|+-.|..+.
T Consensus 143 ~~~~~~-~-~~~~l~GlH~HigSq 164 (247)
T d1knwa2 143 ALDVIQ-R-HHLQLVGIHMHIGSG 164 (247)
T ss_dssp HHHHHH-H-TTCEEEEEECCCCCT
T ss_pred hhhhhh-h-cccceeeehhccCcc
Confidence 887664 4 789999999997653
No 10
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]}
Probab=63.88 E-value=18 Score=26.88 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=57.9
Q ss_pred ccEEEeeCc-HHHHHHHHHHHHhcCCCCeeEEEEE--------eCCCCCCcCCCChhhHHHHHHHHHhcCCCeEEeEEEe
Q 028985 102 LDMVEGVGN-EKIANHLDKAVSNLGRKPLKVLVQV--------NTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 172 (200)
Q Consensus 102 ~~~~~sv~s-~~~a~~l~~~a~~~g~~~~~v~lkv--------dtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~~GlmT 172 (200)
+.++.+|.= ...+..+.+.|++.|+ .+=+|+-+ |.|.+.-..|..++++...++......|+. .|+.-
T Consensus 26 ~pvT~Ai~P~~~~~~~~a~~A~~~g~-EvllhlPMep~~~~~~~~gp~~L~~~~~~~ei~~~l~~~l~~vP~a--vGvnN 102 (224)
T d2nlya1 26 IPVTVAVMPFLEHSTKQAEIAQAAGL-EVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYA--VGLNN 102 (224)
T ss_dssp SCEEEEECSSSTTHHHHHHHHHHTTC-EEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTC--CEEEE
T ss_pred CCeEEEECCCCCchHHHHHHHHHCCC-eEEEEcccCcccCCcCCCCCCcCCCCCCHHHHHHHHHHHHHhCccc--EEEec
Confidence 455555532 2225556677778887 66666644 345444567778888877776554378865 59999
Q ss_pred ecCCCCCCchHHHHHHHHHHHhccc
Q 028985 173 IGMPDYTSTPENFRVMDFSFRRAHV 197 (200)
Q Consensus 173 h~a~~~~~~~~~F~~l~~~~~~~~~ 197 (200)
|-++--.......+.+.+.+++.|.
T Consensus 103 hmGS~~T~~~~~m~~v~~~l~~~gl 127 (224)
T d2nlya1 103 HMGSKIVENEKIMRAILEVVKEKNA 127 (224)
T ss_dssp EECTTGGGCHHHHHHHHHHHHHTTC
T ss_pred CcccchhCCHHHHHHHHHHHHHcCC
Confidence 9886444445667777777766653
No 11
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=48.25 E-value=50 Score=24.70 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=65.5
Q ss_pred EEEEecc--CCHHHHHHHHHhcCCeee---eccHHHHHHHhcCCCC-Cc---------cccccCCCChHHHHhHhccCCC
Q 028985 37 VVAVSKT--KPVSLIRQVYDAGHRSFG---ENYVQEIVDKAPQLPE-DI---------KWHFVGHLQSNKAKTLLGGVPN 101 (200)
Q Consensus 37 l~aVvKa--hg~~~i~~~~~~G~~~fg---va~v~Ea~~lr~~~~~-~i---------~~~~iG~~~~~~~~~~~~~~~~ 101 (200)
+.++|.- +....|+.++++|+..+= +++.+||.+..+...- |. ....-|.. .+.+...- +.
T Consensus 67 ~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~-~~~~~~~n---~~ 142 (253)
T d1dxea_ 67 SAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTV-ADYFAQSN---KN 142 (253)
T ss_dssp SEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTS-TTHHHHHT---TS
T ss_pred CCceecCCCCCHHHHHHHHhcCccEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccccccc-cccccccc---cc
Confidence 4455554 555778999999999984 5777788877766221 11 11111211 12222222 34
Q ss_pred ccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEE---eCCCCCCcCCCC-hhhHHHHHHHH
Q 028985 102 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV---NTSGEESKSGID-PSSCLGIVEHV 158 (200)
Q Consensus 102 ~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkv---dtG~em~R~G~~-~e~~~~~~~~i 158 (200)
.-++.-|.+.+-++.+++.+.--| +++. -| |.+..|+..|=. -.++.+.++.+
T Consensus 143 ~~vi~~IEt~~av~nleeI~av~g---iD~i-~iGp~DLs~slG~~g~~~~p~v~~ai~~v 199 (253)
T d1dxea_ 143 ITILVQIESQQGVDNVDAIAATEG---VDGI-FVGPSDLAAALGHLGNASHPDVQKAIQHI 199 (253)
T ss_dssp CEEEEEECSHHHHHTHHHHHTSTT---CCEE-EECHHHHHHHTTCTTCTTSHHHHHHHHHH
T ss_pred eEEEeecccHHHHHHHHHHhccCC---CceE-EEecCcHHhhccCCCCCCChhHHHHHHHH
Confidence 567888999999999999987544 3442 22 554336555522 24555555444
No 12
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator TM1602, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=40.59 E-value=14 Score=24.69 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=60.8
Q ss_pred EEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCC-cCCCCh-hhHHHHHHHHHhcCC-----CeEEeEEEeecCC
Q 028985 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEES-KSGIDP-SSCLGIVEHVRLRCP-----NLEFSGLMTIGMP 176 (200)
Q Consensus 104 ~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~-R~G~~~-e~~~~~~~~i~~~~~-----~l~~~GlmTh~a~ 176 (200)
+.|+.+. .-+.|+-.....|+ ..+|.++-.+=|+.. .+.+.. .|+..|++.+. +.+ .|. .|+-+|--.
T Consensus 10 v~H~~e~--~~~EL~~IVd~Gg~-V~DV~VeHpvYGei~~~L~I~sr~Dv~~F~~~l~-~~~a~~L~~LT-~GvH~HtI~ 84 (107)
T d1j5ya2 10 VKHAPEE--IKEELLCVVRNGGR-IVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLME-MAKTEPLLTLS-GGVHLHTIE 84 (107)
T ss_dssp EECCGGG--HHHHHHHHHHTTCE-EEEEEEEETTTEEEEEEEEECSHHHHHHHHHHHH-HCCSCCSTTGG-GGEEEEEEE
T ss_pred EeCCHHH--HHHHHHHHHhCCCE-EEEEEEecCCCceEEEEEecCCHHHHHHHHHHHh-ccCCccHHHhc-CCEeeEEEE
Confidence 4444333 33566666666676 889998887765533 255554 89999999986 532 443 677777644
Q ss_pred CCCCchHHHHHHHHHHHhccccCC
Q 028985 177 DYTSTPENFRVMDFSFRRAHVLLH 200 (200)
Q Consensus 177 ~~~~~~~~F~~l~~~~~~~~~~~~ 200 (200)
+++ .+.|..+.+.++++|.|+.
T Consensus 85 a~~--ee~l~~I~~~L~~~G~L~~ 106 (107)
T d1j5ya2 85 APD--EETMERIMRELKKKGFLIE 106 (107)
T ss_dssp ESS--HHHHHHHHHHHHHTTCBCC
T ss_pred eCC--HHHHHHHHHHHHHcCCccc
Confidence 443 5678999999999998863
No 13
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=35.14 E-value=83 Score=23.51 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=61.3
Q ss_pred CcEEEEEecc---------CCHHHHHHHHHhcCCeeee--------ccHHHHHHHhcCCCCCc-ccccc-CCCChHHHHh
Q 028985 34 QIRVVAVSKT---------KPVSLIRQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDI-KWHFV-GHLQSNKAKT 94 (200)
Q Consensus 34 ~v~l~aVvKa---------hg~~~i~~~~~~G~~~fgv--------a~v~Ea~~lr~~~~~~i-~~~~i-G~~~~~~~~~ 94 (200)
...++|=+|. ....++...++.|+..+.| ..++.....++....|+ +=-|| -+.|-.+.+.
T Consensus 44 ~~~iIaEiKr~SPS~g~i~~d~~~~a~~~~~gA~aiSVLTd~~~F~Gs~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~ 123 (247)
T d1a53a_ 44 ITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRKIASSVSIPILMKDFIVKESQIDDAYN 123 (247)
T ss_dssp CCCEEEEECSBCTTSCBCCCCHHHHHHHHTTTCSEEEEECCCTTTCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH
T ss_pred CCeEEeeEecCCCCCCccccCHHHHHHHHHhCCCeEEEecCccccccchHHHHHHHhccccceeecccccChHHHHHHHH
Confidence 3568999985 2234455567889998888 34555555555544453 21232 4445444443
Q ss_pred HhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCC
Q 028985 95 LLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (200)
Q Consensus 95 ~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG 138 (200)
+-. +-.-++.++-+.+.++.|-+.|...|. .++++|.+-
T Consensus 124 ~GA--DaiLLI~~~L~~~~l~~l~~~a~~lgl---~~LvEvh~~ 162 (247)
T d1a53a_ 124 LGA--DTVLLIVKILTERELESLLEYARSYGM---EPLIEINDE 162 (247)
T ss_dssp HTC--SEEEEEGGGSCHHHHHHHHHHHHTTTC---CCEEEECSH
T ss_pred hhc--chhhhhhhhccHHHHHHHHHHHHHHhh---hHHhhcCCH
Confidence 321 223455666778889999999987764 678888775
No 14
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=32.49 E-value=10 Score=28.95 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=32.8
Q ss_pred CCcCCCC--hh--hHHHHHHHHHhcCCCeEEeEEEe--ecCCCC-CCchHHHHHHHHHHHhcccc
Q 028985 141 ESKSGID--PS--SCLGIVEHVRLRCPNLEFSGLMT--IGMPDY-TSTPENFRVMDFSFRRAHVL 198 (200)
Q Consensus 141 m~R~G~~--~e--~~~~~~~~i~~~~~~l~~~GlmT--h~a~~~-~~~~~~F~~l~~~~~~~~~~ 198 (200)
|-|+||+ |+ ...+..+.|. .....-+.+||| |-+.++ ++..+.|+++.+.+++.+.-
T Consensus 2 ~~~LGiSvY~~~~~~e~~~~yi~-~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~ 65 (244)
T d1x7fa2 2 ERKLGISLYPEHSTKEKDMAYIS-AAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNME 65 (244)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHH-HHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCE
T ss_pred CceeEEEEccCCCCHHHHHHHHH-HHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 4567764 22 2344445555 555667888998 334333 34568899999998887753
No 15
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}
Probab=31.40 E-value=46 Score=25.22 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEEeccCC------HHHHHHHHHhcCCeeeeccHHHHHHH
Q 028985 16 SVLHRVRQAAERSGRTQEQIRVVAVSKTKP------VSLIRQVYDAGHRSFGENYVQEIVDK 71 (200)
Q Consensus 16 ~i~~ni~~~~~~~~r~~~~v~l~aVvKahg------~~~i~~~~~~G~~~fgva~v~Ea~~l 71 (200)
.+-+++++..+..|+ .+.++.-+++.+ ...+....+.|+++++.++++.+..+
T Consensus 62 ~~i~~iR~~~~~~g~---~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVrs~~Dv 120 (258)
T d1pkla2 62 TTINNVRQAAAELGV---NIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQV 120 (258)
T ss_dssp HHHHHHHHHHHHTTC---CCEEEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCCSHHHH
T ss_pred HHHHHHHHHHHHhCC---CccccccccccccccccHHHHHHHHHhcCCCeEEEeCCCCHHHH
Confidence 344455555556664 688888887622 23356677899999999998887764
No 16
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.19 E-value=50 Score=24.80 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEEeccCC-----HHHHHHHHHhcCCeeeeccHHHHHHHhc---CC----CCCcccc
Q 028985 15 RSVLHRVRQAAERSGRTQEQIRVVAVSKTKP-----VSLIRQVYDAGHRSFGENYVQEIVDKAP---QL----PEDIKWH 82 (200)
Q Consensus 15 ~~i~~ni~~~~~~~~r~~~~v~l~aVvKahg-----~~~i~~~~~~G~~~fgva~v~Ea~~lr~---~~----~~~i~~~ 82 (200)
...-++++.+.+..++ .+.++.-.+.-. ...+....+.|+++++.+++..+..+.+ .+ ..++ .
T Consensus 44 ~~~i~~ir~~~~~~~~---~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~--~ 118 (246)
T d1e0ta2 44 GQRIQNLRNVMSKTGK---TAAILLDTKGPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENI--H 118 (246)
T ss_dssp HHHHHHHHHHHHHHTC---CCEEEEECCCCSSCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTC--E
T ss_pred HHHHHHHHHHHHHcCC---CCcccccccccccccCcchhhhHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCc--e
Confidence 3444556666666765 577888777622 2334567789999999998866665432 21 1122 1
Q ss_pred ccCCCC----hHHHHhHhccCCCccEEEeeCc--------HHHH----HHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCC
Q 028985 83 FVGHLQ----SNKAKTLLGGVPNLDMVEGVGN--------EKIA----NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI 146 (200)
Q Consensus 83 ~iG~~~----~~~~~~~~~~~~~~~~~~sv~s--------~~~a----~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~ 146 (200)
++.-+. -+.+.++++ ..|-+. |++ ++.+ +.+-+.|...|+ ++=+-=|+=-+ |-...+
T Consensus 119 iiaKIE~~~al~nldeIi~---~sDgIm-IaRGDLg~ei~~e~vp~~Qk~ii~~~~~~~k-pvi~ATq~LeS--M~~~p~ 191 (246)
T d1e0ta2 119 IISKIENQEGLNNFDEILE---ASDGIM-VARGDLGVEIPVEEVIFAQKMMIEKCIRARK-VVITATMMLDS--MIKNPR 191 (246)
T ss_dssp EEEEECSHHHHHTHHHHHH---HSSEEE-EEHHHHHHHSCHHHHHHHHHHHHHHHHHHTC-EEEEECC-----------C
T ss_pred EEEEecchhhhhchHHHHh---hcceEE-EEccchhhhCCHHHHHHHHHHHHHHHHHhCC-CEEEehhhhhh--hhcCCC
Confidence 111111 233455552 233322 221 1122 235566777786 54443334334 766666
Q ss_pred Ch-hhHHHHHHHHHhcCCCeEEeEEEeec
Q 028985 147 DP-SSCLGIVEHVRLRCPNLEFSGLMTIG 174 (200)
Q Consensus 147 ~~-e~~~~~~~~i~~~~~~l~~~GlmTh~ 174 (200)
+. .|+.+++..+.+...++-+.|=-+++
T Consensus 192 PTRAEv~Dv~nav~dG~D~vmLs~ETa~G 220 (246)
T d1e0ta2 192 PTDAEAGDVANAILDGTDAVMLSGESAKG 220 (246)
T ss_dssp CCHHHHHHHHHHHHHTCSEEEECCC----
T ss_pred CchHHHHHHHHHHHhCCcEEEEccccccC
Confidence 54 78888888876455555554433333
No 17
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}
Probab=28.36 E-value=39 Score=24.79 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeEE
Q 028985 110 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 167 (200)
Q Consensus 110 s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~~ 167 (200)
+.+....+.+.|...|. -+||-.|| -+..|..++++.-+.+.+. ..-+++.
T Consensus 130 ~~~ei~~a~~~a~~aGa----dfiKTSTG--~~~~gat~e~v~~m~~~~~-~~~~iKa 180 (211)
T d1ub3a_ 130 SPEEIARLAEAAIRGGA----DFLKTSTG--FGPRGASLEDVALLVRVAQ-GRAQVKA 180 (211)
T ss_dssp CHHHHHHHHHHHHHHTC----SEEECCCS--SSSCCCCHHHHHHHHHHHT-TSSEEEE
T ss_pred CHHHHHHHHHHHHHhcc----ceEEecCC--CCCCCCCHHHHHHHHHHhC-CCceEEC
Confidence 34556777788887786 46666666 8888999999988887775 4333443
No 18
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]}
Probab=27.99 E-value=97 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCCCeEEeEEEeecCCCC
Q 028985 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 149 e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
+|+..++-.+ ..|.+++.||.|-+++..
T Consensus 13 DDa~Al~~al--~~p~vel~gIt~v~GN~~ 40 (313)
T d2masa_ 13 DDAVAILLAH--GNPEIELLAITTVVGNQT 40 (313)
T ss_dssp HHHHHHHHHH--HCTTEEEEEEEECSSSSC
T ss_pred HHHHHHHHHh--hCCCcEEEEEEEccCCcC
Confidence 7787776555 679999999999887654
No 19
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.82 E-value=1.2e+02 Score=22.06 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=40.2
Q ss_pred HHhHhccCCCccEEEeeCcHHHHHHHHHHHHhcCCCCeeE-EEEEeCCCCCCcCCCChhhHHHHHHHHHhcCCCeE
Q 028985 92 AKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKV-LVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (200)
Q Consensus 92 ~~~~~~~~~~~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v-~lkvdtG~em~R~G~~~e~~~~~~~~i~~~~~~l~ 166 (200)
.+.+++ ..++++.+=-+.+.++.+.+.....+. .-++ .++.|.+ .++++.++++.+.+.+..|.
T Consensus 27 A~~la~--~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~Dls--------~~~~v~~~v~~~~~~~g~iD 91 (257)
T d1xg5a_ 27 ARALVQ--QGLKVVGCARTVGNIEELAAECKSAGY-PGTLIPYRCDLS--------NEEDILSMFSAIRSQHSGVD 91 (257)
T ss_dssp HHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEEECCTT--------CHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEccCC--------CHHHHHHHHHHHHHhcCCCC
Confidence 445553 346676666677777777776666654 4444 3578887 46788888887753444443
No 20
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
Probab=22.77 E-value=1.4e+02 Score=22.19 Aligned_cols=43 Identities=7% Similarity=0.126 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhcCCCeEEeEEEeecCCCCCCchHHHHHHHHHHHh
Q 028985 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRVMDFSFRR 194 (200)
Q Consensus 148 ~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~~~~~~~F~~l~~~~~~ 194 (200)
.+|+..++-.+ ..|.+++.|+.|-+++.. ....++....+.+.
T Consensus 12 ~DDa~Al~~al--~~p~v~l~gIt~~~Gn~~--~~~~~~n~~~~l~~ 54 (308)
T d1q8fa_ 12 HDDAIAIMMAA--KHPAIDLLGITIVAGNQT--LDKTLINGLNVCQK 54 (308)
T ss_dssp HHHHHHHHHHH--HCTTEEEEEEEECSSSSC--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh--hCCCCEEEEEEEecCCcc--HHHHHHHHHHHHHH
Confidence 37888876655 569999999999876543 34445545444443
No 21
>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri [TaxId: 623]}
Probab=21.54 E-value=36 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=24.6
Q ss_pred EEEEEeccCCHHHH-HHHHHhcCCeeeeccH
Q 028985 36 RVVAVSKTKPVSLI-RQVYDAGHRSFGENYV 65 (200)
Q Consensus 36 ~l~aVvKahg~~~i-~~~~~~G~~~fgva~v 65 (200)
++.|+++-+....+ .+|.+.|+.+|-+..+
T Consensus 3 ~I~AIIrp~k~~~V~~AL~~~G~~g~Tv~~v 33 (112)
T d2ns1b1 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEV 33 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 57899999999887 6778999999887543
No 22
>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.36 E-value=1.3e+02 Score=21.55 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=46.5
Q ss_pred ccEEEeeCcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCC---hhhHHHHHHHHHhcCCCeEEeEEEeecCCCC
Q 028985 102 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID---PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY 178 (200)
Q Consensus 102 ~~~~~sv~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~---~e~~~~~~~~i~~~~~~l~~~GlmTh~a~~~ 178 (200)
..++..+|.....+.+.+.+++.|. +.-+- .-+. .+.+-. +++..++++... .....-..|+..|.+.+-
T Consensus 57 ~G~Ttv~d~~~~~~~~~~a~~~~g~-r~~~~--~~~~---~~~~~~~~~~~e~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 129 (281)
T d1p1ma2 57 HGIAGFVDMYFHEEWIAKAVRDFGM-RALLT--RGLV---DSNGDDGGRLEENLKLYNEWN-GFEGRIFVGFGPHSPYLC 129 (281)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHCC-EEEEE--EEEC---CBTTBCTTHHHHHHHHHHHHT-TGGGTEEEEEEECCTTTS
T ss_pred CCeEEEeeeccCcHHHHHHHHHhCC-ceEEe--eeee---ecCccccccHHHHHHHHHHhc-CccCceEEEEecccchhh
Confidence 4555445444445566677766664 32222 2221 222222 244444444443 323344457777776543
Q ss_pred CCchHHHHHHHHHHHhccccCC
Q 028985 179 TSTPENFRVMDFSFRRAHVLLH 200 (200)
Q Consensus 179 ~~~~~~F~~l~~~~~~~~~~~~ 200 (200)
+ .+.++.+.+.+++.++.+|
T Consensus 130 ~--~~~~~~~~~~A~~~~~~i~ 149 (281)
T d1p1ma2 130 S--EEYLKRVFDTAKSLNAPVT 149 (281)
T ss_dssp C--HHHHHHHHHHHHHTTCCEE
T ss_pred h--hhhhHHHHHHHhccCcccc
Confidence 2 4567777888887777654
No 23
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.24 E-value=43 Score=20.14 Aligned_cols=47 Identities=6% Similarity=0.011 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCcCCCChhhHHHHHHHHH
Q 028985 109 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (200)
Q Consensus 109 ~s~~~a~~l~~~a~~~g~~~~~v~lkvdtG~em~R~G~~~e~~~~~~~~i~ 159 (200)
-+.+++..|.+.|.+.|. -.|.+-|.....=.|+.++++.++.+.+.
T Consensus 27 it~~ql~~la~ia~~yg~----g~i~lTtrq~l~l~~i~~~~~~~v~~~L~ 73 (80)
T d1zj8a1 27 VSGTILTAVADLMARAGS----DRIRFTPYQKLVILDIPDALLDDLIAGLD 73 (80)
T ss_dssp EEHHHHHHHHHHHHHHTC----CCEEECTTSCEEEEEECHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCC----CeEEECCCCcEEEcCCCHHHHHHHHHHHH
Confidence 467888899999887763 22345554333346778889999988886
Done!