BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028986
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 347 bits (891), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/189 (87%), Positives = 176/189 (93%)
Query: 1 MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
MGC+ S+P R+SG GL+N ENA +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD
Sbjct: 1 MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60
Query: 61 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAV+VYDITSP+
Sbjct: 61 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120
Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DG+E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180
Query: 181 ADNINQLFE 189
ADNINQLFE
Sbjct: 181 ADNINQLFE 189
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 219 bits (559), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 102/164 (62%), Positives = 132/164 (80%), Gaps = 1/164 (0%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
SS NL KLVLLGD G GKS +V+RFV+GQF + T+GA+F S T+A+ ++T VK
Sbjct: 2 ASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNAT-VK 60
Query: 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
FEIWDTAGQERY +LAP+YYRGAA A++VYDITS DSF +A+ WV+ELQK G+P++VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
GNKADL ++R+V A++ YAE+NG+FF+ETSAKTA N+N +F
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIF 164
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 129/158 (81%), Gaps = 1/158 (0%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
NL KLVLLGD G GKS +V+RFV+GQF + T+GA+F S T+++ ++T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNAT-VKFEIWDT 66
Query: 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
AGQERY +LAP+YYRGAA A++VYDITS +S +A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
L +KR+V A++ YAE+NG+FF+ETSAKTA N+N +F
Sbjct: 127 LEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIF 164
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 210 bits (534), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YAE N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIF 175
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 210 bits (534), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Query: 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
+++ K + KLVLLG++ VGKS +VLRFVRG F + T+GA+FL+QT+ L D TTVKF
Sbjct: 2 NNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLND-TTVKF 60
Query: 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
EIWDTAGQERY LAP+YYRGA A+VVYDI S DSF +A WVKELQ+ GSP+IV+AL
Sbjct: 61 EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 120
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
GNK DL KR+V + +YAE+NG+ F+ETSAKT+ N+N+LF
Sbjct: 121 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELF 163
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V QD YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIF 175
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N S +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TT
Sbjct: 10 NGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V ++ YA+ N + F+ETSAKTA N+N LF
Sbjct: 129 ALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 206 bits (524), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K++ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 7 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 65
Query: 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRGAA A++V+D+T+ SF +A+ WV+ELQ G+P++VMAL GNK+
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 125
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
DL + R+V A+D YA++NG+FF+ETSAKTA N+ ++F
Sbjct: 126 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 164
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 128/164 (78%), Gaps = 1/164 (0%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
SS KN+ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VK
Sbjct: 2 ASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VK 60
Query: 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
FEIWDTAGQERY +LAP+YYRGAA A++V+DIT+ SF +A+ WV+ELQ G+P++VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
GNKADL + R+V A++ YA++N +FF+ETSAKTA N+ +F
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIF 164
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TT
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V ++ YA+ N + F+ETSAKTA N+N LF
Sbjct: 129 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TT
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V ++ YA+ N + F+ETSAKTA N+N LF
Sbjct: 129 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TT
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
AL GNKADL KR V ++ YA+ N + F+ETSAKTA N+N LF
Sbjct: 129 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 119/158 (75%), Gaps = 4/158 (2%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+KLVLLG++ VGKS IVLRFV F + T+GA+FL+Q + + + T VKFEIWDTAGQ
Sbjct: 8 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQ 66
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+A+LAP+YYR A A+VVYD+T P SF KA++WVKEL + S DI++ALVGNK D+ +
Sbjct: 67 ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 126
Query: 154 ---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
+R+V ++G + AE+ G+ F ETSAKT +N+N +F
Sbjct: 127 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 164
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG+A AV+VYDIT DSF+ + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
REVP +D EYAE G +ETSAK A NI +LF+
Sbjct: 125 IREVPLKDAKEYAESIGALVVETSAKNAINIEELFQ 160
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 183 bits (464), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG+A AV+VYDIT DSF+ + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
REVP +D EYAE G +ETSAK A NI +LF+
Sbjct: 125 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 160
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N + + KLVLLGDS VGKS +VLRFV+ QFD + T+GA+FL+QT+ + ++T+
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VK EIWDTAGQERY +LAP+YYR A A+VVYDIT S KA+ W+KELQ+ IV+
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 143 ALVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
AL GNK DL E+R V D YA + + F ETSAKTA+N+N+LF +
Sbjct: 124 ALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAI 173
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ ALAP+YYRG+A A++VYDIT ++F+ + WVKEL++HG P+IV+A+ GNK DL +
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
REV +D +YA+ F+ETSAK A NIN+LF
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG+A AV+VYDIT DSF + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
REVP +D EYAE G +ETSAK A NI +LF+
Sbjct: 125 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 160
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ ALAP+YYRG+A A++VYDIT ++F+ + WV+EL++HG P IV+A+ GNK DL +
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
REV +D +YA+ F+ETSAK A NIN+LF
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
E + ALAP+YYRG+A A++VYDIT ++F+ + WVKEL++HG P+IV+A+ GNK DL +
Sbjct: 65 EAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
REV +D +YA+ F+ETSAK A NIN+LF
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
Length = 226
Score = 166 bits (421), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 25 GSSDAK-NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
G ++AK + K+VL+GDS VGKS I+ RF R +F SK T+G F ++T+ + D TV
Sbjct: 8 GDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVI-DHKTV 66
Query: 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA 143
K +IWDTAGQERY A+ YYRGA A++VYDIT +F+ W++EL+ H +IV+
Sbjct: 67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126
Query: 144 LVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
L+GNK DL +R+VP +D E+AEK G+FF+ETSA A N+ F ++T
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLT 176
>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2
SV=1
Length = 224
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS ++ RF R +F SK T+G F ++T++++ + +K +IWDTAGQE
Sbjct: 19 KVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKS-IKAQIWDTAGQE 77
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYD+T ++F W++EL+ H +IV+ L+GNK+DL ++
Sbjct: 78 RYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKSDLEDQ 137
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP +D E+AEK G+FF+ETSA A N+ F L+T
Sbjct: 138 RAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMT 176
>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1
Length = 222
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS I+ RF R +F SK T+G F ++T+A+Q + VK +IWDTAGQE
Sbjct: 17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKS-VKAQIWDTAGQE 75
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ W++EL+ H +IV+ L+GNK DL ++
Sbjct: 76 RYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQ 135
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP +D E+A+K G+FF+ETSA A N+ F ++T
Sbjct: 136 RAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLT 174
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 106/155 (68%), Gaps = 4/155 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVLLG+ GK+CI R VR +F PT T+GA+FL +++ + D+ +K EIWDTAGQE
Sbjct: 51 KLVLLGEMNTGKTCISSRLVRNEFGPTDS-TIGAAFLVKSMVV-DNINIKLEIWDTAGQE 108
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY +L P+YYRGAA AVVVYDIT ++F + WV ELQKH SP++++AL GNK DL
Sbjct: 109 RYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDL-PN 167
Query: 155 REVPAQDGIEY-AEKNGMFFIETSAKTADNINQLF 188
REV + Y +E F ETSA + NIN+LF
Sbjct: 168 REVQVDEVNRYISELGNAIFFETSAASGQNINELF 202
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 7/166 (4%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
L +K+VLLG+S VGKS IVLRFV F + + T+GA+FL++ I +D +KFEIWDTA
Sbjct: 11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRIT-RDGKVIKFEIWDTA 69
Query: 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQER+A LAP+YYR A A+VV+D+T+ SF KAQ WV+EL + DIV+ALVGNK DL
Sbjct: 70 GQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDL 129
Query: 152 ------HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
+E R + A E+ + + E SAKT +NI Q+F+ L
Sbjct: 130 LNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTL 175
>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2
SV=1
Length = 226
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS I+ R+ R +F SK T+G F ++T+ + D +VK +IWDTAGQE
Sbjct: 19 KVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVI-DHKSVKAQIWDTAGQE 77
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ W++EL+ H +IV+ L+GNK+DL ++
Sbjct: 78 RYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKSDLVDQ 137
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R +P +D E+AEK G+FF+ETSA A N+ F ++T
Sbjct: 138 RAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLT 176
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
+ D + KLVL+GDSGVGKS ++ RF + +F+ SK T+G F ++T+ + D+ VK
Sbjct: 6 TDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNV-DAKVVKA 64
Query: 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
+IWDTAGQERY A+ YYRGA A++VYD+T +F A W+KEL+ H P+IV+ L+
Sbjct: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLI 124
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
GNK+DL VP +DG +AE+ ++F+ETSA A N+ F ++T
Sbjct: 125 GNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLT 172
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F SK T+G F ++T+ ++ TVK +IWDTAGQE
Sbjct: 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE-GRTVKAQIWDTAGQE 72
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYD+T P +F W+KEL+ H +IV+ L+GNK DL
Sbjct: 73 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHL 132
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R V +D YAEK G+ FIETSA A N+ + F+ +++
Sbjct: 133 RAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILS 171
>sp|Q40723|RLGP2_ORYSJ Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2
PE=2 SV=2
Length = 217
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS I+ RF R F SK T+G F ++++ ++ T+K +IWDTAGQE
Sbjct: 14 KMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQME-GKTIKAQIWDTAGQE 72
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT SF+ W++EL+ H IV+ +VGNK+DL
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHL 132
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R V +G AEK G+FF+ETSA A N+ + F+ +IT
Sbjct: 133 RAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIIT 171
>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Length = 214
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS I+ RF R +F SK T+G F ++T+ ++ TVK +IWDTAGQE
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQE 72
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ Q W++EL+ H +IV+ + GNK+DL
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHL 132
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R V +DG AEK G+ F+ETSA A NI + F+ ++T
Sbjct: 133 RAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILT 171
>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1
PE=2 SV=2
Length = 226
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS ++ RF R +F+ SK T+G F ++T+ + D+ TVK +IWDTAGQE
Sbjct: 20 KVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHI-DARTVKAQIWDTAGQE 78
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT SF+ W++EL+ H +IV+ L+GNK+DL
Sbjct: 79 RYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTL 138
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP +D E+AE+ +FF+ETSA + N+ F ++T
Sbjct: 139 RVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLT 177
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 160 bits (405), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K VL+GDSGVGKS +++RF R +F+ SK T+G F ++ I L D+ +K +IWDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVL-DNKKIKAQIWDTAGQE 70
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT SF+ W+KEL++H +IV+ LVGNK DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHL 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R V ++ +A +N + FIETSA A N+ + F+ ++T
Sbjct: 131 RAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLT 169
>sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1
Length = 216
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS I+ RF R +F SK T+G F ++T+ ++ TVK +IWDTAGQE
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQE 72
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ Q W++EL+ H +IV+ + GNK+DL+
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R V DG +EK G+ F+ETSA A NI + F+ ++T
Sbjct: 133 RAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILT 171
>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2
SV=1
Length = 217
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVL+GDSGVGKS ++ RF R +F SK T+G F ++++ + D +K ++WDTAGQE
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHV-DEKIIKAQLWDTAGQE 73
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F + W+KEL+ H ++V+ LVGNKADL
Sbjct: 74 RYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGNKADLRHL 133
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP ++ ++E+ MFF+ETSA A N+ Q F ++T
Sbjct: 134 RAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLT 172
>sp|Q5ZJN2|RB11A_CHICK Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1
Length = 216
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 71
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP + +AEKNG+ FIETSA + N+ F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>sp|P62494|RB11A_RAT Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1
SV=3
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 71
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP + +AEKNG+ FIETSA + N+ F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>sp|P62493|RB11A_RABIT Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2
SV=3
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 71
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP + +AEKNG+ FIETSA + N+ F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>sp|Q5R9M7|RB11A_PONAB Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 71
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP + +AEKNG+ FIETSA + N+ F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 71
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP + +AEKNG+ FIETSA + N+ F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 71
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
R VP + +AEKNG+ FIETSA + N+ F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,609,670
Number of Sequences: 539616
Number of extensions: 2757746
Number of successful extensions: 12656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 10334
Number of HSP's gapped (non-prelim): 1193
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)