Query 028986
Match_columns 200
No_of_seqs 162 out of 1839
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4E-40 8.6E-45 225.4 18.6 171 28-199 4-175 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 2.5E-38 5.4E-43 215.8 18.7 167 31-198 3-169 (200)
3 KOG0078 GTP-binding protein SE 100.0 1.1E-37 2.5E-42 216.3 19.5 170 29-199 8-177 (207)
4 cd04120 Rab12 Rab12 subfamily. 100.0 1.8E-36 3.9E-41 217.5 20.9 164 34-198 1-165 (202)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.4E-36 3.1E-41 207.4 18.8 166 31-197 20-186 (221)
6 cd04121 Rab40 Rab40 subfamily. 100.0 3.8E-36 8.3E-41 213.9 21.6 166 31-198 4-169 (189)
7 KOG0098 GTPase Rab2, small G p 100.0 9.4E-37 2E-41 206.7 17.2 165 30-195 3-167 (216)
8 KOG0080 GTPase Rab18, small G 100.0 1.6E-36 3.6E-41 200.7 16.9 167 30-197 8-175 (209)
9 cd04122 Rab14 Rab14 subfamily. 100.0 5.8E-35 1.3E-39 204.8 21.2 164 33-197 2-165 (166)
10 KOG0093 GTPase Rab3, small G p 100.0 4.7E-36 1E-40 195.7 14.4 169 31-200 19-187 (193)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.1E-34 2.4E-39 205.5 20.5 162 31-195 3-179 (182)
12 cd01867 Rab8_Rab10_Rab13_like 100.0 1.6E-34 3.5E-39 202.7 21.0 165 32-197 2-166 (167)
13 cd04127 Rab27A Rab27a subfamil 100.0 2.1E-34 4.6E-39 204.4 21.8 168 31-198 2-179 (180)
14 cd04133 Rop_like Rop subfamily 100.0 2E-34 4.3E-39 203.1 20.3 160 34-196 2-173 (176)
15 cd04117 Rab15 Rab15 subfamily. 100.0 3.2E-34 7E-39 200.0 20.9 160 34-194 1-160 (161)
16 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.7E-34 8.1E-39 206.5 21.3 164 34-197 1-169 (201)
17 KOG0087 GTPase Rab11/YPT3, sma 100.0 9.8E-35 2.1E-39 200.9 17.2 170 27-197 8-177 (222)
18 cd01865 Rab3 Rab3 subfamily. 100.0 6.3E-34 1.4E-38 199.3 21.3 162 34-196 2-163 (165)
19 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6E-34 1.3E-38 199.6 20.8 164 33-197 2-165 (166)
20 KOG0394 Ras-related GTPase [Ge 100.0 1.4E-34 3.1E-39 195.8 16.7 168 29-197 5-179 (210)
21 cd04109 Rab28 Rab28 subfamily. 100.0 6.8E-34 1.5E-38 207.1 21.7 164 34-197 1-167 (215)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.4E-34 9.5E-39 201.3 19.9 163 33-197 2-165 (172)
23 cd04131 Rnd Rnd subfamily. Th 100.0 5.8E-34 1.3E-38 201.4 20.4 160 33-195 1-175 (178)
24 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-33 2.5E-38 205.0 21.4 166 33-198 2-168 (211)
25 cd01868 Rab11_like Rab11-like. 100.0 1.9E-33 4E-38 196.9 21.3 163 32-195 2-164 (165)
26 cd01875 RhoG RhoG subfamily. 100.0 1.8E-33 3.9E-38 201.3 21.4 163 32-197 2-178 (191)
27 cd04119 RJL RJL (RabJ-Like) su 100.0 1.8E-33 3.9E-38 197.2 20.8 162 34-196 1-167 (168)
28 PF00071 Ras: Ras family; Int 100.0 8.3E-34 1.8E-38 198.1 18.9 161 35-196 1-161 (162)
29 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.7E-33 3.8E-38 205.3 21.2 164 31-197 11-189 (232)
30 PLN03110 Rab GTPase; Provision 100.0 2.6E-33 5.7E-38 203.9 21.6 168 29-197 8-175 (216)
31 cd01864 Rab19 Rab19 subfamily. 100.0 3.5E-33 7.6E-38 195.5 21.2 163 32-195 2-165 (165)
32 PLN03071 GTP-binding nuclear p 100.0 3.8E-33 8.2E-38 203.4 21.3 166 29-198 9-174 (219)
33 cd04113 Rab4 Rab4 subfamily. 100.0 3.9E-33 8.3E-38 194.5 20.5 161 34-195 1-161 (161)
34 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.9E-33 6.3E-38 198.6 20.1 162 34-197 1-167 (182)
35 cd04125 RabA_like RabA-like su 100.0 4.3E-33 9.3E-38 199.1 21.1 164 34-198 1-164 (188)
36 cd01866 Rab2 Rab2 subfamily. 100.0 5.9E-33 1.3E-37 195.0 21.4 165 32-197 3-167 (168)
37 KOG0091 GTPase Rab39, small G 100.0 4E-34 8.8E-39 189.9 14.0 166 31-196 6-173 (213)
38 cd04110 Rab35 Rab35 subfamily. 100.0 6.8E-33 1.5E-37 199.6 21.3 165 31-197 4-168 (199)
39 cd04106 Rab23_lke Rab23-like s 100.0 6.6E-33 1.4E-37 193.5 20.6 160 34-194 1-161 (162)
40 cd04136 Rap_like Rap-like subf 100.0 3.3E-33 7.1E-38 195.2 18.9 161 33-195 1-162 (163)
41 KOG0079 GTP-binding protein H- 100.0 6.3E-34 1.4E-38 186.0 13.9 164 31-196 6-169 (198)
42 cd04112 Rab26 Rab26 subfamily. 100.0 7.3E-33 1.6E-37 198.3 20.6 164 34-198 1-165 (191)
43 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.5E-33 1.4E-37 195.8 20.0 159 34-195 2-174 (175)
44 KOG0086 GTPase Rab4, small G p 100.0 1.3E-33 2.9E-38 185.6 15.1 169 27-196 3-171 (214)
45 smart00175 RAB Rab subfamily o 100.0 1.3E-32 2.9E-37 192.2 20.9 164 34-198 1-164 (164)
46 PTZ00369 Ras-like protein; Pro 100.0 6.5E-33 1.4E-37 198.2 19.6 165 32-198 4-169 (189)
47 cd04144 Ras2 Ras2 subfamily. 100.0 4.6E-33 1E-37 199.1 18.7 162 35-198 1-165 (190)
48 cd04175 Rap1 Rap1 subgroup. T 100.0 7.1E-33 1.5E-37 193.8 18.7 162 33-196 1-163 (164)
49 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.8E-32 6E-37 190.7 21.4 161 34-195 1-163 (164)
50 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.1E-32 6.6E-37 191.5 21.2 163 35-198 2-167 (170)
51 cd01860 Rab5_related Rab5-rela 100.0 3.5E-32 7.5E-37 190.0 21.1 162 33-195 1-162 (163)
52 cd01861 Rab6 Rab6 subfamily. 100.0 3.3E-32 7.1E-37 189.8 20.7 161 34-195 1-161 (161)
53 cd00877 Ran Ran (Ras-related n 100.0 2.4E-32 5.1E-37 191.5 20.0 160 34-197 1-160 (166)
54 PLN03108 Rab family protein; P 100.0 3E-32 6.5E-37 197.6 21.2 166 31-197 4-169 (210)
55 cd04116 Rab9 Rab9 subfamily. 100.0 4.2E-32 9E-37 190.9 21.3 163 31-195 3-170 (170)
56 cd04124 RabL2 RabL2 subfamily. 100.0 3.2E-32 6.9E-37 189.9 20.2 161 34-199 1-161 (161)
57 cd04126 Rab20 Rab20 subfamily. 100.0 2E-32 4.2E-37 198.7 19.8 158 34-197 1-191 (220)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 2.3E-32 4.9E-37 191.0 19.4 161 33-195 1-162 (163)
59 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.8E-32 8.3E-37 191.2 20.5 163 33-196 2-169 (170)
60 cd04140 ARHI_like ARHI subfami 100.0 2.4E-32 5.3E-37 191.3 19.0 159 34-194 2-163 (165)
61 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.9E-32 1.1E-36 196.8 21.1 162 33-197 1-177 (222)
62 cd01871 Rac1_like Rac1-like su 100.0 6.1E-32 1.3E-36 190.6 20.6 158 34-194 2-173 (174)
63 KOG0095 GTPase Rab30, small G 100.0 4.2E-33 9.2E-38 182.6 13.0 167 29-196 3-169 (213)
64 smart00173 RAS Ras subfamily o 100.0 4.1E-32 8.8E-37 189.9 18.7 162 34-197 1-163 (164)
65 cd04132 Rho4_like Rho4-like su 100.0 8.6E-32 1.9E-36 192.2 20.5 163 34-198 1-169 (187)
66 cd04134 Rho3 Rho3 subfamily. 100.0 9.9E-32 2.1E-36 192.1 20.7 160 35-197 2-175 (189)
67 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.7E-32 1.5E-36 188.2 19.4 160 33-195 1-161 (162)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 8.9E-32 1.9E-36 188.1 19.9 161 33-195 2-163 (164)
69 KOG0088 GTPase Rab21, small G 100.0 3.8E-33 8.2E-38 184.5 11.7 171 28-199 8-178 (218)
70 PLN03118 Rab family protein; P 100.0 2.3E-31 5E-36 193.3 21.7 167 29-197 10-178 (211)
71 cd04123 Rab21 Rab21 subfamily. 100.0 3E-31 6.6E-36 184.9 21.2 161 34-195 1-161 (162)
72 cd01862 Rab7 Rab7 subfamily. 100.0 3.7E-31 8E-36 186.3 20.9 164 34-198 1-169 (172)
73 cd04118 Rab24 Rab24 subfamily. 100.0 4.4E-31 9.5E-36 189.4 20.9 163 34-198 1-168 (193)
74 cd04142 RRP22 RRP22 subfamily. 100.0 3.4E-31 7.3E-36 190.2 20.3 163 34-197 1-175 (198)
75 smart00176 RAN Ran (Ras-relate 100.0 2.2E-31 4.8E-36 190.9 19.2 156 39-198 1-156 (200)
76 cd01873 RhoBTB RhoBTB subfamil 100.0 3.6E-31 7.7E-36 189.4 20.0 159 33-194 2-194 (195)
77 cd01863 Rab18 Rab18 subfamily. 100.0 7.8E-31 1.7E-35 182.8 20.8 160 34-195 1-161 (161)
78 smart00174 RHO Rho (Ras homolo 100.0 3.7E-31 8E-36 186.8 19.1 159 36-197 1-173 (174)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 1E-30 2.2E-35 183.6 19.6 161 33-195 1-163 (168)
80 cd04103 Centaurin_gamma Centau 100.0 7.8E-31 1.7E-35 182.1 18.7 154 34-195 1-158 (158)
81 cd04143 Rhes_like Rhes_like su 100.0 9.5E-31 2.1E-35 193.3 20.2 160 34-195 1-170 (247)
82 cd00154 Rab Rab family. Rab G 100.0 1.3E-30 2.8E-35 180.7 19.5 159 34-193 1-159 (159)
83 KOG0081 GTPase Rab27, small G 100.0 4.1E-33 8.8E-38 184.4 6.5 171 29-199 5-184 (219)
84 cd04114 Rab30 Rab30 subfamily. 100.0 2.8E-30 6.1E-35 181.4 21.4 164 31-195 5-168 (169)
85 cd04146 RERG_RasL11_like RERG/ 100.0 4.9E-31 1.1E-35 184.6 17.0 160 35-196 1-164 (165)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.6E-30 5.6E-35 182.3 20.2 157 34-193 1-171 (173)
87 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-30 2.4E-35 183.5 17.9 163 31-196 2-166 (169)
88 cd04135 Tc10 TC10 subfamily. 100.0 4E-30 8.6E-35 181.5 19.9 159 34-195 1-173 (174)
89 cd04148 RGK RGK subfamily. Th 100.0 2.7E-30 5.8E-35 188.6 19.5 160 34-196 1-163 (221)
90 cd04139 RalA_RalB RalA/RalB su 100.0 1.4E-29 2.9E-34 176.9 20.3 162 34-197 1-163 (164)
91 cd00876 Ras Ras family. The R 100.0 1.4E-29 3.1E-34 176.1 19.0 159 35-195 1-160 (160)
92 cd01870 RhoA_like RhoA-like su 100.0 3.1E-29 6.8E-34 177.1 20.6 159 34-195 2-174 (175)
93 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.3E-29 2.9E-34 180.2 18.1 164 32-198 2-172 (183)
94 PLN00223 ADP-ribosylation fact 100.0 2.3E-29 5.1E-34 178.5 18.1 160 31-198 15-180 (181)
95 cd04149 Arf6 Arf6 subfamily. 100.0 1.3E-29 2.9E-34 177.7 16.6 155 31-193 7-167 (168)
96 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.1E-31 2.4E-36 172.8 5.0 160 38-198 2-162 (192)
97 KOG0097 GTPase Rab14, small G 100.0 2.7E-29 5.8E-34 163.5 15.2 165 30-195 8-172 (215)
98 smart00177 ARF ARF-like small 100.0 9.9E-30 2.1E-34 179.6 14.3 158 31-196 11-174 (175)
99 cd04158 ARD1 ARD1 subfamily. 100.0 5.4E-29 1.2E-33 175.0 17.4 156 35-198 1-163 (169)
100 cd04147 Ras_dva Ras-dva subfam 100.0 1.4E-28 3E-33 177.0 19.2 160 35-196 1-163 (198)
101 cd04129 Rho2 Rho2 subfamily. 100.0 2.1E-28 4.6E-33 174.6 20.0 161 34-197 2-174 (187)
102 KOG0395 Ras-related GTPase [Ge 100.0 5.2E-29 1.1E-33 177.4 16.3 164 32-197 2-166 (196)
103 cd04137 RheB Rheb (Ras Homolog 100.0 1.9E-28 4.1E-33 173.9 19.1 162 34-197 2-164 (180)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-29 3.7E-34 175.7 13.5 152 34-193 1-158 (159)
105 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.1E-29 2.5E-34 177.5 12.5 153 35-193 1-163 (164)
106 cd04154 Arl2 Arl2 subfamily. 100.0 1.1E-28 2.4E-33 174.0 17.5 157 29-193 10-172 (173)
107 PTZ00132 GTP-binding nuclear p 100.0 4.4E-28 9.4E-33 176.6 21.1 166 28-197 4-169 (215)
108 PTZ00133 ADP-ribosylation fact 100.0 1.6E-28 3.5E-33 174.3 18.0 161 31-199 15-181 (182)
109 cd00157 Rho Rho (Ras homology) 100.0 4.2E-28 9.2E-33 170.6 19.2 157 34-193 1-170 (171)
110 cd01893 Miro1 Miro1 subfamily. 100.0 5.8E-28 1.3E-32 169.3 18.9 159 34-196 1-164 (166)
111 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.8E-28 1E-32 173.6 18.1 149 34-182 1-176 (202)
112 cd04157 Arl6 Arl6 subfamily. 100.0 5.4E-28 1.2E-32 168.6 16.2 153 35-194 1-162 (162)
113 KOG0393 Ras-related small GTPa 100.0 1.3E-28 2.9E-33 171.8 12.0 164 31-196 2-179 (198)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2E-27 4.4E-32 167.7 17.2 153 33-193 15-173 (174)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.1E-27 2.4E-32 167.9 15.3 151 35-193 1-166 (167)
116 cd00879 Sar1 Sar1 subfamily. 100.0 3.1E-27 6.7E-32 169.0 17.4 157 31-195 17-190 (190)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.9E-27 6.2E-32 164.7 14.9 152 35-193 1-159 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6E-27 1.3E-31 164.2 15.9 152 35-193 1-166 (167)
119 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.5E-27 7.6E-32 163.9 14.5 151 35-193 1-157 (158)
120 cd04151 Arl1 Arl1 subfamily. 100.0 2.3E-27 4.9E-32 164.9 13.2 151 35-193 1-157 (158)
121 PLN00023 GTP-binding protein; 100.0 2.2E-26 4.8E-31 172.8 18.5 143 29-171 17-189 (334)
122 PF00025 Arf: ADP-ribosylation 100.0 2.4E-26 5.3E-31 162.1 17.5 157 31-195 12-175 (175)
123 KOG0073 GTP-binding ADP-ribosy 99.9 3.3E-26 7.3E-31 152.3 15.7 164 29-198 12-180 (185)
124 smart00178 SAR Sar1p-like memb 99.9 4.1E-26 8.8E-31 162.4 17.2 157 31-195 15-184 (184)
125 KOG4252 GTP-binding protein [S 99.9 1.8E-28 3.9E-33 165.5 4.1 173 23-197 10-182 (246)
126 PTZ00099 rab6; Provisional 99.9 1.1E-25 2.4E-30 158.6 18.3 141 57-198 4-144 (176)
127 cd04159 Arl10_like Arl10-like 99.9 7.3E-26 1.6E-30 156.9 14.2 151 36-193 2-158 (159)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 2.8E-25 6.2E-30 170.2 17.9 163 34-198 159-330 (335)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.9E-25 4.2E-30 156.7 15.4 155 35-195 2-167 (168)
130 cd04155 Arl3 Arl3 subfamily. 99.9 1E-24 2.2E-29 153.7 17.9 156 31-194 12-173 (173)
131 cd01878 HflX HflX subfamily. 99.9 3.2E-25 6.8E-30 160.4 15.5 158 30-195 38-204 (204)
132 cd01898 Obg Obg subfamily. Th 99.9 2.9E-25 6.4E-30 156.0 14.7 158 35-195 2-170 (170)
133 cd01890 LepA LepA subfamily. 99.9 6.6E-25 1.4E-29 155.5 16.4 156 35-196 2-177 (179)
134 cd04171 SelB SelB subfamily. 99.9 2.2E-24 4.8E-29 150.5 15.7 152 34-193 1-163 (164)
135 TIGR00231 small_GTP small GTP- 99.9 4.5E-24 9.9E-29 147.6 16.4 158 33-192 1-160 (161)
136 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.3E-24 7.1E-29 150.3 15.5 159 35-197 2-167 (168)
137 COG1100 GTPase SAR1 and relate 99.9 1.8E-23 4E-28 152.7 19.6 164 33-197 5-186 (219)
138 TIGR02528 EutP ethanolamine ut 99.9 1.2E-24 2.7E-29 148.5 11.7 134 35-192 2-141 (142)
139 KOG0070 GTP-binding ADP-ribosy 99.9 1.8E-24 3.9E-29 147.6 11.8 162 29-198 13-180 (181)
140 TIGR02729 Obg_CgtA Obg family 99.9 1.7E-23 3.8E-28 160.3 17.7 159 34-195 158-328 (329)
141 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-23 3.7E-28 161.6 17.4 155 31-194 187-350 (351)
142 PRK04213 GTP-binding protein; 99.9 2.5E-24 5.5E-29 155.3 11.3 155 30-198 6-194 (201)
143 cd00882 Ras_like_GTPase Ras-li 99.9 3.8E-23 8.3E-28 141.8 16.4 153 38-192 1-156 (157)
144 TIGR00436 era GTP-binding prot 99.9 1.8E-23 3.9E-28 157.1 15.8 155 35-197 2-165 (270)
145 cd01879 FeoB Ferrous iron tran 99.9 2.7E-23 5.8E-28 144.2 14.8 149 38-196 1-157 (158)
146 KOG0075 GTP-binding ADP-ribosy 99.9 7.1E-25 1.5E-29 143.5 5.8 162 31-199 18-185 (186)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 1.6E-23 3.5E-28 150.3 13.3 159 35-198 4-190 (194)
148 PF02421 FeoB_N: Ferrous iron 99.9 1.2E-23 2.7E-28 143.4 10.7 148 34-191 1-156 (156)
149 cd01881 Obg_like The Obg-like 99.9 5.5E-23 1.2E-27 145.1 13.4 155 38-194 1-175 (176)
150 PRK15494 era GTPase Era; Provi 99.9 2.6E-22 5.6E-27 154.8 16.5 156 31-197 50-217 (339)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.8E-22 6E-27 138.8 14.7 146 34-195 2-156 (157)
152 PRK12297 obgE GTPase CgtA; Rev 99.9 9.5E-22 2.1E-26 154.4 19.2 157 35-197 160-328 (424)
153 PF08477 Miro: Miro-like prote 99.9 7.7E-23 1.7E-27 135.5 10.8 114 35-150 1-119 (119)
154 cd00881 GTP_translation_factor 99.9 3.1E-22 6.7E-27 142.8 14.6 155 35-196 1-187 (189)
155 KOG1673 Ras GTPases [General f 99.9 1.7E-22 3.7E-27 133.6 11.9 165 29-195 16-185 (205)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.7E-22 8.1E-27 158.3 16.0 154 30-198 200-362 (442)
157 PRK03003 GTP-binding protein D 99.9 3.4E-22 7.3E-27 160.8 15.6 161 31-198 209-384 (472)
158 cd01889 SelB_euk SelB subfamil 99.9 2.6E-22 5.5E-27 143.8 12.9 159 34-196 1-186 (192)
159 PRK15467 ethanolamine utilizat 99.9 4.4E-22 9.6E-27 138.1 13.6 140 35-197 3-148 (158)
160 PRK11058 GTPase HflX; Provisio 99.9 5.9E-22 1.3E-26 156.4 15.7 157 34-197 198-363 (426)
161 KOG3883 Ras family small GTPas 99.9 3.4E-21 7.3E-26 127.2 16.2 166 30-196 6-175 (198)
162 PRK12296 obgE GTPase CgtA; Rev 99.9 1.9E-21 4.1E-26 154.6 18.0 162 33-198 159-342 (500)
163 TIGR01393 lepA GTP-binding pro 99.9 1.3E-21 2.8E-26 160.3 17.1 157 35-197 5-181 (595)
164 PRK05291 trmE tRNA modificatio 99.9 4.4E-22 9.6E-27 158.7 13.9 149 32-197 214-371 (449)
165 cd01894 EngA1 EngA1 subfamily. 99.9 7.5E-22 1.6E-26 136.7 12.7 147 37-195 1-157 (157)
166 PRK00454 engB GTP-binding prot 99.9 2.6E-21 5.6E-26 139.0 15.9 161 29-197 20-195 (196)
167 KOG0071 GTP-binding ADP-ribosy 99.9 5.9E-22 1.3E-26 128.9 10.8 159 31-197 15-179 (180)
168 PRK00089 era GTPase Era; Revie 99.9 3.3E-21 7.2E-26 146.6 16.7 160 32-197 4-172 (292)
169 PRK03003 GTP-binding protein D 99.9 2E-21 4.4E-26 156.3 16.2 153 34-197 39-200 (472)
170 TIGR00487 IF-2 translation ini 99.9 3.1E-21 6.8E-26 157.4 17.1 156 30-194 84-248 (587)
171 TIGR03594 GTPase_EngA ribosome 99.9 3.1E-21 6.7E-26 154.1 16.8 160 31-198 170-346 (429)
172 cd01888 eIF2_gamma eIF2-gamma 99.9 1.9E-21 4.1E-26 140.3 14.1 162 34-197 1-200 (203)
173 PRK12298 obgE GTPase CgtA; Rev 99.9 4.1E-21 8.9E-26 150.0 17.0 160 35-197 161-334 (390)
174 cd04163 Era Era subfamily. Er 99.9 5.5E-21 1.2E-25 133.3 15.4 157 33-195 3-168 (168)
175 cd01895 EngA2 EngA2 subfamily. 99.9 8.3E-21 1.8E-25 133.4 15.4 155 33-194 2-173 (174)
176 COG1159 Era GTPase [General fu 99.9 9.2E-21 2E-25 139.1 14.8 161 31-198 4-174 (298)
177 TIGR03598 GTPase_YsxC ribosome 99.9 6.3E-21 1.4E-25 135.1 13.3 150 28-185 13-179 (179)
178 TIGR00475 selB selenocysteine- 99.9 1.5E-20 3.2E-25 154.0 16.7 154 34-197 1-167 (581)
179 PF00009 GTP_EFTU: Elongation 99.9 3.6E-21 7.9E-26 137.4 11.1 158 32-196 2-187 (188)
180 KOG0076 GTP-binding ADP-ribosy 99.9 3.2E-21 6.8E-26 129.9 8.5 162 30-198 14-189 (197)
181 CHL00189 infB translation init 99.9 4E-20 8.6E-25 153.2 16.8 158 30-195 241-409 (742)
182 KOG4423 GTP-binding protein-li 99.9 3.3E-23 7.1E-28 141.0 -1.3 167 30-196 22-194 (229)
183 TIGR00437 feoB ferrous iron tr 99.8 1.8E-20 3.9E-25 153.6 14.0 146 40-195 1-154 (591)
184 PRK05433 GTP-binding protein L 99.8 5.6E-20 1.2E-24 150.9 16.8 159 33-197 7-185 (600)
185 PRK05306 infB translation init 99.8 4.8E-20 1E-24 154.0 16.5 155 30-194 287-450 (787)
186 cd00880 Era_like Era (E. coli 99.8 2.4E-20 5.3E-25 129.0 12.5 152 38-195 1-163 (163)
187 TIGR03594 GTPase_EngA ribosome 99.8 9E-20 2E-24 145.7 16.6 151 35-197 1-161 (429)
188 PRK00093 GTP-binding protein D 99.8 8.7E-20 1.9E-24 146.0 15.7 147 34-194 2-160 (435)
189 PRK00093 GTP-binding protein D 99.8 7.9E-20 1.7E-24 146.2 15.4 158 31-197 171-345 (435)
190 PRK09554 feoB ferrous iron tra 99.8 1.9E-19 4.1E-24 151.0 18.0 153 33-195 3-167 (772)
191 cd04105 SR_beta Signal recogni 99.8 1E-19 2.2E-24 131.2 12.9 118 35-154 2-124 (203)
192 PRK09518 bifunctional cytidyla 99.8 3.1E-19 6.6E-24 149.9 17.4 158 32-198 449-623 (712)
193 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.5E-20 9.7E-25 126.1 9.7 162 31-196 8-169 (216)
194 cd01896 DRG The developmentall 99.8 9.1E-19 2E-23 128.7 17.0 152 35-196 2-226 (233)
195 KOG0074 GTP-binding ADP-ribosy 99.8 4.6E-20 1E-24 120.3 8.3 159 31-196 15-179 (185)
196 KOG0072 GTP-binding ADP-ribosy 99.8 1.1E-20 2.5E-25 123.4 4.9 161 32-198 17-181 (182)
197 PRK09518 bifunctional cytidyla 99.8 9.5E-19 2.1E-23 147.0 17.3 155 31-197 273-437 (712)
198 KOG1707 Predicted Ras related/ 99.8 6.5E-20 1.4E-24 144.4 9.6 164 29-195 5-174 (625)
199 TIGR00483 EF-1_alpha translati 99.8 3.5E-19 7.5E-24 141.9 14.0 152 30-186 4-197 (426)
200 TIGR03680 eif2g_arch translati 99.8 3.1E-19 6.8E-24 141.1 13.6 164 31-196 2-196 (406)
201 TIGR00491 aIF-2 translation in 99.8 6.2E-19 1.3E-23 143.9 15.6 156 34-196 5-216 (590)
202 COG1160 Predicted GTPases [Gen 99.8 1.2E-18 2.7E-23 134.7 15.4 161 32-198 177-353 (444)
203 cd01876 YihA_EngB The YihA (En 99.8 9.8E-19 2.1E-23 122.2 13.5 151 35-195 1-170 (170)
204 PRK12317 elongation factor 1-a 99.8 5.6E-19 1.2E-23 140.7 13.2 155 30-187 3-196 (425)
205 PRK04000 translation initiatio 99.8 1E-18 2.2E-23 138.2 14.3 166 29-197 5-202 (411)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 1.1E-18 2.5E-23 142.8 15.1 158 35-197 3-192 (594)
207 PF10662 PduV-EutP: Ethanolami 99.8 7.9E-19 1.7E-23 117.3 11.6 135 35-192 3-142 (143)
208 COG2229 Predicted GTPase [Gene 99.8 4.7E-18 1E-22 116.1 15.3 156 30-194 7-176 (187)
209 COG1160 Predicted GTPases [Gen 99.8 1.4E-18 3E-23 134.4 13.6 150 34-195 4-164 (444)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 5.7E-18 1.2E-22 121.1 15.5 147 33-184 2-171 (195)
211 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.4E-18 3.1E-23 125.8 12.5 148 35-186 1-184 (208)
212 COG2262 HflX GTPases [General 99.8 6.5E-18 1.4E-22 128.9 16.5 161 29-197 188-357 (411)
213 PRK10512 selenocysteinyl-tRNA- 99.8 3.9E-18 8.5E-23 140.3 16.6 157 35-197 2-167 (614)
214 COG0486 ThdF Predicted GTPase 99.8 1.4E-18 3.1E-23 134.7 13.1 156 30-197 214-377 (454)
215 PRK04004 translation initiatio 99.8 6.8E-18 1.5E-22 138.2 16.8 158 31-195 4-217 (586)
216 PRK10218 GTP-binding protein; 99.8 7.3E-18 1.6E-22 138.0 16.7 160 33-197 5-196 (607)
217 cd04168 TetM_like Tet(M)-like 99.8 1.6E-17 3.4E-22 122.3 15.7 113 35-152 1-129 (237)
218 cd04167 Snu114p Snu114p subfam 99.8 5.1E-18 1.1E-22 123.4 12.9 157 35-195 2-210 (213)
219 COG0218 Predicted GTPase [Gene 99.8 1.6E-17 3.6E-22 115.9 14.5 159 31-198 22-199 (200)
220 KOG1423 Ras-like GTPase ERA [C 99.8 2E-17 4.4E-22 121.5 13.9 166 27-197 66-272 (379)
221 PRK12735 elongation factor Tu; 99.8 4E-17 8.7E-22 128.8 16.4 162 29-195 8-202 (396)
222 PRK12736 elongation factor Tu; 99.8 3.6E-17 7.7E-22 129.0 15.8 162 30-196 9-201 (394)
223 cd01883 EF1_alpha Eukaryotic e 99.8 8.6E-18 1.9E-22 122.7 11.0 148 35-185 1-194 (219)
224 cd04104 p47_IIGP_like p47 (47- 99.8 2.6E-17 5.5E-22 118.3 12.8 160 33-198 1-186 (197)
225 COG0370 FeoB Fe2+ transport sy 99.8 5.1E-17 1.1E-21 131.1 15.4 156 33-198 3-166 (653)
226 cd04165 GTPBP1_like GTPBP1-lik 99.7 9.2E-17 2E-21 117.2 14.3 155 35-193 1-220 (224)
227 TIGR00485 EF-Tu translation el 99.7 8E-17 1.7E-21 127.1 15.0 160 29-193 8-198 (394)
228 COG1084 Predicted GTPase [Gene 99.7 1.1E-16 2.4E-21 118.9 13.6 156 32-194 167-334 (346)
229 cd01850 CDC_Septin CDC/Septin. 99.7 2.1E-16 4.5E-21 118.8 15.3 144 32-180 3-186 (276)
230 cd01885 EF2 EF2 (for archaea a 99.7 6.8E-17 1.5E-21 117.5 12.1 114 35-152 2-138 (222)
231 CHL00071 tufA elongation facto 99.7 2.3E-16 5E-21 125.0 15.8 149 30-183 9-180 (409)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 2.9E-16 6.2E-21 117.5 15.4 115 35-154 4-138 (267)
233 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 5.1E-17 1.1E-21 118.1 11.0 161 35-198 1-178 (232)
234 COG3596 Predicted GTPase [Gene 99.7 3.4E-17 7.4E-22 119.0 9.5 164 30-197 36-223 (296)
235 COG1163 DRG Predicted GTPase [ 99.7 8E-16 1.7E-20 114.1 16.2 156 31-196 61-289 (365)
236 KOG1489 Predicted GTP-binding 99.7 3.7E-16 8.1E-21 115.4 13.5 155 35-194 198-365 (366)
237 PRK00049 elongation factor Tu; 99.7 1.1E-15 2.3E-20 120.7 16.5 161 30-195 9-202 (396)
238 PLN03126 Elongation factor Tu; 99.7 5.5E-16 1.2E-20 124.2 14.7 149 29-182 77-248 (478)
239 KOG0462 Elongation factor-type 99.7 3.8E-16 8.3E-21 122.6 13.0 162 31-196 58-235 (650)
240 PLN03127 Elongation factor Tu; 99.7 1.3E-15 2.8E-20 121.4 15.9 165 27-196 55-252 (447)
241 PLN00043 elongation factor 1-a 99.7 1.1E-15 2.4E-20 121.9 15.3 151 30-185 4-202 (447)
242 COG0532 InfB Translation initi 99.7 2.3E-15 4.9E-20 118.6 16.3 158 32-196 4-170 (509)
243 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.1E-15 4.6E-20 108.3 14.9 159 34-197 1-185 (196)
244 cd01886 EF-G Elongation factor 99.7 5.7E-16 1.2E-20 116.0 12.3 112 35-153 1-130 (270)
245 PRK05124 cysN sulfate adenylyl 99.7 3.5E-16 7.5E-21 125.7 11.8 153 29-187 23-216 (474)
246 cd04170 EF-G_bact Elongation f 99.7 1.3E-16 2.8E-21 119.9 8.8 142 35-185 1-162 (268)
247 COG0536 Obg Predicted GTPase [ 99.7 1.5E-15 3.3E-20 113.4 13.9 161 36-198 162-335 (369)
248 PRK09866 hypothetical protein; 99.7 4.9E-15 1.1E-19 119.7 17.3 108 84-193 231-350 (741)
249 PF09439 SRPRB: Signal recogni 99.7 1.6E-16 3.4E-21 110.9 7.6 118 33-154 3-127 (181)
250 PF01926 MMR_HSR1: 50S ribosom 99.7 2.6E-15 5.5E-20 98.9 13.0 105 35-148 1-116 (116)
251 TIGR02034 CysN sulfate adenyly 99.7 7.8E-16 1.7E-20 121.8 12.4 149 34-186 1-187 (406)
252 PTZ00141 elongation factor 1- 99.7 1.6E-15 3.4E-20 121.1 13.8 153 30-186 4-203 (446)
253 cd01899 Ygr210 Ygr210 subfamil 99.7 2.8E-15 6.1E-20 114.3 13.3 158 36-197 1-270 (318)
254 KOG3905 Dynein light intermedi 99.6 1.9E-14 4.2E-19 106.8 16.0 164 29-195 48-289 (473)
255 COG0481 LepA Membrane GTPase L 99.6 8E-15 1.7E-19 113.7 14.5 159 32-196 8-186 (603)
256 PRK05506 bifunctional sulfate 99.6 5E-15 1.1E-19 123.3 13.8 154 29-186 20-211 (632)
257 PRK13351 elongation factor G; 99.6 1.5E-14 3.2E-19 121.7 16.7 113 32-153 7-139 (687)
258 PTZ00327 eukaryotic translatio 99.6 8.5E-15 1.8E-19 116.7 14.1 166 29-196 30-233 (460)
259 KOG1145 Mitochondrial translat 99.6 2.9E-14 6.3E-19 112.3 16.1 157 30-195 150-315 (683)
260 KOG1191 Mitochondrial GTPase [ 99.6 3E-15 6.6E-20 116.4 9.6 163 31-196 266-450 (531)
261 KOG0077 Vesicle coat complex C 99.6 2.9E-15 6.2E-20 100.6 8.1 156 32-195 19-192 (193)
262 PF05783 DLIC: Dynein light in 99.6 7E-14 1.5E-18 111.3 16.3 163 32-197 24-265 (472)
263 KOG0090 Signal recognition par 99.6 9.3E-15 2E-19 102.3 9.5 155 34-195 39-238 (238)
264 PRK00741 prfC peptide chain re 99.6 2.9E-14 6.3E-19 115.7 13.8 119 31-154 8-146 (526)
265 PRK09602 translation-associate 99.6 6.6E-14 1.4E-18 109.9 14.8 84 34-117 2-113 (396)
266 PRK12739 elongation factor G; 99.6 1.9E-13 4.2E-18 114.9 17.4 116 31-153 6-139 (691)
267 COG4917 EutP Ethanolamine util 99.6 1.5E-14 3.2E-19 92.8 8.0 137 35-194 3-144 (148)
268 TIGR00503 prfC peptide chain r 99.6 6.9E-14 1.5E-18 113.5 13.8 118 31-153 9-146 (527)
269 COG5256 TEF1 Translation elong 99.6 7.3E-14 1.6E-18 107.0 12.6 154 30-186 4-201 (428)
270 TIGR00484 EF-G translation elo 99.5 1.6E-13 3.5E-18 115.3 14.7 141 32-181 9-171 (689)
271 cd01853 Toc34_like Toc34-like 99.5 3E-13 6.5E-18 100.1 12.9 124 28-154 26-164 (249)
272 KOG1707 Predicted Ras related/ 99.5 5.8E-13 1.3E-17 105.7 14.8 165 25-195 417-582 (625)
273 PRK12740 elongation factor G; 99.5 5.5E-13 1.2E-17 112.1 15.3 107 39-152 1-125 (668)
274 TIGR00991 3a0901s02IAP34 GTP-b 99.5 5.8E-13 1.3E-17 100.2 12.8 123 29-154 34-168 (313)
275 PF04548 AIG1: AIG1 family; I 99.5 5.4E-13 1.2E-17 96.9 11.8 161 34-198 1-188 (212)
276 KOG1490 GTP-binding protein CR 99.5 1E-13 2.2E-18 108.2 8.3 163 31-197 166-342 (620)
277 PRK13768 GTPase; Provisional 99.5 2.4E-13 5.3E-18 101.1 10.0 110 84-196 98-247 (253)
278 PRK00007 elongation factor G; 99.5 1E-12 2.2E-17 110.5 14.6 142 31-181 8-171 (693)
279 PRK14845 translation initiatio 99.5 2E-12 4.4E-17 111.1 15.5 145 45-196 473-673 (1049)
280 smart00010 small_GTPase Small 99.5 7.3E-13 1.6E-17 88.0 9.7 114 34-185 1-115 (124)
281 TIGR00101 ureG urease accessor 99.5 1.4E-12 2.9E-17 93.7 11.6 103 83-196 92-196 (199)
282 PTZ00258 GTP-binding protein; 99.5 2E-12 4.4E-17 100.7 13.3 88 30-117 18-126 (390)
283 TIGR00157 ribosome small subun 99.4 7.2E-13 1.6E-17 98.1 9.1 97 94-194 24-121 (245)
284 TIGR02836 spore_IV_A stage IV 99.4 1.1E-11 2.3E-16 96.0 15.6 157 31-192 15-233 (492)
285 TIGR00490 aEF-2 translation el 99.4 6.6E-13 1.4E-17 112.0 9.5 117 32-153 18-152 (720)
286 cd00066 G-alpha G protein alph 99.4 2.2E-12 4.8E-17 99.0 11.5 115 83-197 161-312 (317)
287 TIGR00073 hypB hydrogenase acc 99.4 3.2E-12 7E-17 92.5 11.5 154 31-195 20-206 (207)
288 KOG1532 GTPase XAB1, interacts 99.4 1.7E-12 3.7E-17 94.6 9.7 115 84-198 117-266 (366)
289 cd01882 BMS1 Bms1. Bms1 is an 99.4 4.1E-12 9E-17 93.0 11.8 139 31-182 37-182 (225)
290 PF05049 IIGP: Interferon-indu 99.4 1.6E-12 3.4E-17 100.3 9.3 160 31-198 33-220 (376)
291 PF00350 Dynamin_N: Dynamin fa 99.4 3.1E-12 6.6E-17 89.6 10.0 63 84-149 102-168 (168)
292 PRK09435 membrane ATPase/prote 99.4 7.6E-12 1.6E-16 95.8 12.5 103 83-196 149-260 (332)
293 PF03029 ATP_bind_1: Conserved 99.4 1.6E-13 3.6E-18 100.8 3.2 112 84-195 92-236 (238)
294 COG1217 TypA Predicted membran 99.4 6E-12 1.3E-16 97.8 11.7 158 35-197 7-196 (603)
295 PF00735 Septin: Septin; Inte 99.4 3.7E-11 7.9E-16 90.5 14.0 140 32-176 3-181 (281)
296 PLN00116 translation elongatio 99.4 6E-12 1.3E-16 107.8 10.4 118 31-152 17-163 (843)
297 KOG0082 G-protein alpha subuni 99.3 3.7E-11 8E-16 91.7 13.3 115 83-197 195-345 (354)
298 smart00275 G_alpha G protein a 99.3 2.1E-11 4.6E-16 94.4 12.2 115 83-197 184-335 (342)
299 PRK07560 elongation factor EF- 99.3 2.6E-11 5.5E-16 102.7 13.7 117 32-152 19-152 (731)
300 PRK09601 GTP-binding protein Y 99.3 7.2E-11 1.6E-15 91.2 14.7 84 34-117 3-107 (364)
301 KOG0458 Elongation factor 1 al 99.3 5.4E-11 1.2E-15 94.7 13.7 156 29-187 173-373 (603)
302 KOG0461 Selenocysteine-specifi 99.3 7.6E-11 1.7E-15 88.7 13.4 160 32-195 6-192 (522)
303 PTZ00416 elongation factor 2; 99.3 1.2E-11 2.6E-16 105.8 10.4 117 32-152 18-157 (836)
304 COG0378 HypB Ni2+-binding GTPa 99.3 9.3E-12 2E-16 86.7 7.5 79 109-195 120-200 (202)
305 COG5257 GCD11 Translation init 99.3 1.1E-11 2.4E-16 92.2 8.0 165 31-197 8-203 (415)
306 COG2895 CysN GTPases - Sulfate 99.3 8.4E-11 1.8E-15 88.6 12.6 148 30-185 3-192 (431)
307 TIGR00993 3a0901s04IAP86 chlor 99.3 7.2E-11 1.6E-15 96.3 12.7 123 29-153 114-250 (763)
308 KOG1144 Translation initiation 99.3 1.4E-11 3.1E-16 100.3 8.5 166 30-199 472-690 (1064)
309 KOG0410 Predicted GTP binding 99.3 1E-11 2.2E-16 92.5 6.3 154 31-197 176-342 (410)
310 KOG3886 GTP-binding protein [S 99.3 1.8E-11 3.9E-16 87.1 7.1 146 33-181 4-164 (295)
311 cd01900 YchF YchF subfamily. 99.3 1.7E-10 3.6E-15 86.4 12.3 82 36-117 1-103 (274)
312 KOG2655 Septin family protein 99.2 4.2E-10 9.1E-15 86.0 13.9 148 29-181 17-202 (366)
313 KOG1486 GTP-binding protein DR 99.2 1.4E-09 3E-14 78.7 15.6 154 33-196 62-288 (364)
314 TIGR00750 lao LAO/AO transport 99.2 6.8E-11 1.5E-15 90.3 9.6 102 83-195 127-237 (300)
315 smart00053 DYNc Dynamin, GTPas 99.2 2.4E-10 5.3E-15 83.9 11.5 69 83-154 125-207 (240)
316 COG5019 CDC3 Septin family pro 99.2 1E-09 2.2E-14 83.4 14.5 140 30-175 20-200 (373)
317 KOG1954 Endocytosis/signaling 99.1 1.4E-10 3.1E-15 87.9 7.4 123 31-156 56-228 (532)
318 KOG1547 Septin CDC10 and relat 99.1 5.4E-10 1.2E-14 80.2 9.7 147 30-182 43-229 (336)
319 PRK10463 hydrogenase nickel in 99.1 8.9E-10 1.9E-14 82.5 10.3 56 140-195 231-288 (290)
320 COG0480 FusA Translation elong 99.1 1.5E-09 3.3E-14 90.4 11.9 120 31-154 8-143 (697)
321 COG3276 SelB Selenocysteine-sp 99.1 1.9E-09 4.2E-14 83.7 10.9 154 35-195 2-161 (447)
322 KOG0468 U5 snRNP-specific prot 99.0 1.2E-09 2.5E-14 88.6 8.8 117 31-151 126-261 (971)
323 COG1703 ArgK Putative periplas 99.0 1.8E-09 3.9E-14 80.1 9.0 155 31-196 49-254 (323)
324 cd01859 MJ1464 MJ1464. This f 99.0 1.1E-09 2.3E-14 75.9 7.1 95 96-196 2-96 (156)
325 PF03308 ArgK: ArgK protein; 99.0 2.1E-10 4.5E-15 83.8 3.6 151 31-195 27-229 (266)
326 cd01855 YqeH YqeH. YqeH is an 99.0 2.8E-09 6.1E-14 76.2 9.3 94 96-196 24-125 (190)
327 PRK12289 GTPase RsgA; Reviewed 99.0 3.4E-09 7.3E-14 82.2 10.3 93 97-194 80-173 (352)
328 KOG0705 GTPase-activating prot 99.0 1.4E-09 3.1E-14 86.3 7.0 158 31-196 28-189 (749)
329 cd01854 YjeQ_engC YjeQ/EngC. 99.0 4E-09 8.7E-14 80.0 8.7 89 100-193 72-161 (287)
330 COG0012 Predicted GTPase, prob 99.0 2.4E-08 5.2E-13 76.5 12.5 85 33-117 2-108 (372)
331 COG5192 BMS1 GTP-binding prote 98.9 8.4E-09 1.8E-13 82.6 10.2 142 27-181 63-211 (1077)
332 PRK00098 GTPase RsgA; Reviewed 98.9 4.2E-09 9.1E-14 80.4 7.8 87 103-193 77-164 (298)
333 PF00503 G-alpha: G-protein al 98.9 7.4E-08 1.6E-12 76.4 14.7 113 83-195 236-389 (389)
334 PRK12288 GTPase RsgA; Reviewed 98.9 1E-08 2.3E-13 79.5 9.5 90 103-195 117-207 (347)
335 KOG1487 GTP-binding protein DR 98.9 2.9E-08 6.3E-13 72.2 10.2 151 35-196 61-281 (358)
336 COG4108 PrfC Peptide chain rel 98.9 2.8E-08 6.1E-13 77.3 9.9 136 31-175 10-167 (528)
337 KOG2486 Predicted GTPase [Gene 98.8 6.5E-09 1.4E-13 76.3 5.9 155 30-194 133-314 (320)
338 KOG0448 Mitofusin 1 GTPase, in 98.8 8.9E-08 1.9E-12 78.1 12.3 147 31-181 107-311 (749)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.3E-08 2.9E-13 69.2 6.2 54 35-93 85-138 (141)
340 COG0050 TufB GTPases - transla 98.8 3.9E-08 8.5E-13 72.9 8.9 146 30-180 9-177 (394)
341 KOG3887 Predicted small GTPase 98.8 2.2E-08 4.8E-13 72.1 7.4 161 34-198 28-204 (347)
342 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.3E-08 4.9E-13 69.3 7.3 56 32-92 101-156 (157)
343 cd04178 Nucleostemin_like Nucl 98.8 2E-08 4.4E-13 70.4 6.7 57 31-92 115-171 (172)
344 TIGR03597 GTPase_YqeH ribosome 98.8 5.3E-08 1.2E-12 76.2 9.0 95 93-194 50-151 (360)
345 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.2E-08 6.8E-13 68.6 6.8 90 103-195 5-94 (157)
346 COG1618 Predicted nucleotide k 98.7 1.5E-06 3.2E-11 59.1 13.7 148 31-197 3-177 (179)
347 PF09547 Spore_IV_A: Stage IV 98.7 1.9E-06 4.1E-11 67.3 15.8 155 33-192 17-233 (492)
348 KOG1143 Predicted translation 98.7 1.2E-07 2.6E-12 72.5 8.4 167 20-190 154-382 (591)
349 cd01856 YlqF YlqF. Proteins o 98.7 7.2E-08 1.6E-12 67.7 6.7 58 31-93 113-170 (171)
350 cd01855 YqeH YqeH. YqeH is an 98.7 5.4E-08 1.2E-12 69.5 5.9 56 33-92 127-189 (190)
351 TIGR03596 GTPase_YlqF ribosome 98.6 1.2E-07 2.6E-12 71.7 7.3 58 31-93 116-173 (276)
352 cd01849 YlqF_related_GTPase Yl 98.6 1.5E-07 3.2E-12 65.1 7.2 83 108-194 1-83 (155)
353 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.5E-07 3.3E-12 71.5 7.9 58 31-93 119-176 (287)
354 cd01851 GBP Guanylate-binding 98.6 1.1E-06 2.4E-11 64.4 11.8 119 31-151 5-146 (224)
355 cd01856 YlqF YlqF. Proteins o 98.6 1.5E-07 3.2E-12 66.1 6.5 98 90-195 2-100 (171)
356 COG1161 Predicted GTPases [Gen 98.6 1.4E-07 3E-12 72.7 6.6 58 31-93 130-187 (322)
357 TIGR00092 GTP-binding protein 98.6 1.7E-07 3.7E-12 72.8 7.1 84 34-117 3-108 (368)
358 cd01859 MJ1464 MJ1464. This f 98.6 2.3E-07 5E-12 64.1 7.2 56 32-92 100-155 (156)
359 PF03193 DUF258: Protein of un 98.5 1.1E-07 2.4E-12 65.4 4.4 23 35-57 37-59 (161)
360 cd01849 YlqF_related_GTPase Yl 98.5 3E-07 6.5E-12 63.5 6.6 57 31-92 98-154 (155)
361 COG5258 GTPBP1 GTPase [General 98.5 2E-06 4.2E-11 66.3 11.4 161 29-193 113-336 (527)
362 TIGR03348 VI_IcmF type VI secr 98.5 5.5E-07 1.2E-11 80.3 9.2 114 35-154 113-258 (1169)
363 TIGR03596 GTPase_YlqF ribosome 98.5 3.9E-07 8.5E-12 68.9 7.2 100 90-197 4-104 (276)
364 PRK14974 cell division protein 98.5 2.8E-07 6.1E-12 71.1 6.0 93 83-188 223-322 (336)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.3E-07 9.2E-12 61.7 6.0 76 102-183 7-84 (141)
366 PRK10416 signal recognition pa 98.5 2E-06 4.3E-11 66.2 9.9 92 83-187 197-301 (318)
367 KOG0463 GTP-binding protein GP 98.5 5.5E-07 1.2E-11 69.1 6.6 174 18-198 118-359 (641)
368 cd03112 CobW_like The function 98.4 1.9E-06 4.1E-11 59.7 8.7 63 83-151 87-158 (158)
369 KOG0467 Translation elongation 98.4 7E-07 1.5E-11 73.8 7.1 115 32-151 8-136 (887)
370 PRK01889 GTPase RsgA; Reviewed 98.4 1.3E-06 2.8E-11 68.3 8.2 84 103-192 109-193 (356)
371 PRK09563 rbgA GTPase YlqF; Rev 98.4 7.1E-07 1.5E-11 67.9 6.5 101 89-197 6-107 (287)
372 KOG0466 Translation initiation 98.4 2E-07 4.4E-12 69.5 3.2 162 29-196 34-241 (466)
373 PRK12288 GTPase RsgA; Reviewed 98.4 6.4E-07 1.4E-11 69.6 6.0 56 36-95 208-269 (347)
374 TIGR00064 ftsY signal recognit 98.4 2.4E-06 5.2E-11 64.4 8.6 93 83-188 155-260 (272)
375 KOG0447 Dynamin-like GTP bindi 98.4 2E-05 4.4E-10 63.5 13.8 83 83-168 412-508 (980)
376 KOG1491 Predicted GTP-binding 98.4 1.3E-06 2.9E-11 66.1 6.7 87 31-117 18-125 (391)
377 PRK12289 GTPase RsgA; Reviewed 98.4 9.4E-07 2E-11 68.8 6.1 23 36-58 175-197 (352)
378 PRK13695 putative NTPase; Prov 98.3 1.9E-05 4E-10 55.6 11.8 82 101-196 91-173 (174)
379 PRK13796 GTPase YqeH; Provisio 98.3 4.8E-06 1E-10 65.4 9.3 94 95-195 58-158 (365)
380 KOG0460 Mitochondrial translat 98.3 9.2E-06 2E-10 61.7 10.0 148 27-178 48-217 (449)
381 PF03266 NTPase_1: NTPase; In 98.3 3.8E-06 8.2E-11 58.7 7.3 136 35-184 1-163 (168)
382 PRK13796 GTPase YqeH; Provisio 98.3 1.5E-06 3.2E-11 68.3 5.7 56 34-93 161-220 (365)
383 TIGR03597 GTPase_YqeH ribosome 98.3 2.1E-06 4.6E-11 67.3 6.2 56 34-93 155-214 (360)
384 TIGR00157 ribosome small subun 98.3 2.3E-06 4.9E-11 63.6 5.9 24 35-58 122-145 (245)
385 COG1162 Predicted GTPases [Gen 98.2 2.2E-06 4.8E-11 64.4 5.5 57 35-95 166-228 (301)
386 PRK14722 flhF flagellar biosyn 98.2 1.9E-05 4E-10 61.9 9.9 141 34-178 138-316 (374)
387 KOG0464 Elongation factor G [T 98.2 2.4E-06 5.2E-11 66.5 4.8 118 32-154 36-169 (753)
388 TIGR01425 SRP54_euk signal rec 98.2 1.6E-05 3.5E-10 63.2 9.1 85 83-178 183-274 (429)
389 KOG1424 Predicted GTP-binding 98.2 3.7E-06 8.1E-11 66.9 5.5 58 31-93 312-369 (562)
390 PRK00098 GTPase RsgA; Reviewed 98.1 6.7E-06 1.5E-10 62.9 6.5 24 35-58 166-189 (298)
391 KOG3859 Septins (P-loop GTPase 98.1 8E-06 1.7E-10 60.4 6.4 63 29-92 38-104 (406)
392 PF00448 SRP54: SRP54-type pro 98.1 2.6E-05 5.6E-10 55.9 8.9 86 83-179 84-176 (196)
393 COG3523 IcmF Type VI protein s 98.1 1.4E-05 3E-10 70.4 8.5 114 36-154 128-271 (1188)
394 COG1162 Predicted GTPases [Gen 98.1 4.1E-05 8.8E-10 57.7 9.5 96 97-195 70-166 (301)
395 KOG0085 G protein subunit Galp 98.1 4.4E-06 9.5E-11 60.2 4.2 115 83-197 199-350 (359)
396 COG1126 GlnQ ABC-type polar am 98.1 4.9E-06 1.1E-10 59.5 4.4 41 159-199 145-187 (240)
397 KOG4273 Uncharacterized conser 98.1 9.4E-05 2E-09 54.1 10.8 116 34-152 5-122 (418)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.3E-05 2.7E-10 61.1 6.4 59 34-96 162-226 (287)
399 PRK12727 flagellar biosynthesi 98.0 3.8E-05 8.2E-10 62.4 9.1 84 83-178 429-519 (559)
400 KOG2484 GTPase [General functi 98.0 5.9E-06 1.3E-10 63.8 4.2 67 21-92 240-306 (435)
401 PRK11889 flhF flagellar biosyn 98.0 2.7E-05 5.8E-10 61.1 6.9 86 83-178 321-412 (436)
402 PF06858 NOG1: Nucleolar GTP-b 97.9 4.4E-05 9.5E-10 42.7 5.5 44 106-150 13-58 (58)
403 COG0523 Putative GTPases (G3E 97.9 0.00017 3.7E-09 55.6 10.7 96 83-187 85-192 (323)
404 cd03115 SRP The signal recogni 97.9 0.00019 4.2E-09 50.4 9.7 83 83-175 83-171 (173)
405 PRK00771 signal recognition pa 97.9 3.2E-05 6.9E-10 61.9 6.1 84 84-178 177-267 (437)
406 KOG0099 G protein subunit Galp 97.9 6.4E-05 1.4E-09 55.3 7.1 70 83-152 202-282 (379)
407 PRK14721 flhF flagellar biosyn 97.9 9.6E-05 2.1E-09 58.8 8.7 85 83-178 270-361 (420)
408 KOG2485 Conserved ATP/GTP bind 97.9 3.4E-05 7.5E-10 58.0 5.8 62 30-93 140-206 (335)
409 PRK10867 signal recognition pa 97.9 2E-05 4.4E-10 62.9 4.6 85 83-178 184-275 (433)
410 cd00009 AAA The AAA+ (ATPases 97.8 0.00024 5.3E-09 47.8 9.0 24 34-57 20-43 (151)
411 PF11111 CENP-M: Centromere pr 97.8 0.0018 3.9E-08 44.9 12.9 145 28-197 10-154 (176)
412 KOG1534 Putative transcription 97.8 2.6E-05 5.6E-10 55.5 3.8 23 33-55 3-25 (273)
413 KOG0465 Mitochondrial elongati 97.8 3.3E-05 7.2E-10 62.9 4.9 133 31-170 37-185 (721)
414 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00043 9.2E-09 48.9 9.8 23 35-57 27-49 (177)
415 TIGR00959 ffh signal recogniti 97.8 3.3E-05 7.1E-10 61.7 4.5 86 83-178 183-274 (428)
416 cd03114 ArgK-like The function 97.8 0.00037 7.9E-09 47.7 9.0 57 83-150 92-148 (148)
417 COG1419 FlhF Flagellar GTP-bin 97.8 0.00033 7.1E-09 55.0 9.5 85 83-177 282-372 (407)
418 PRK11537 putative GTP-binding 97.7 0.001 2.3E-08 51.4 12.1 85 83-177 91-186 (318)
419 PRK12726 flagellar biosynthesi 97.7 0.00021 4.5E-09 56.0 8.2 86 83-178 286-377 (407)
420 PF13207 AAA_17: AAA domain; P 97.7 3.4E-05 7.5E-10 50.7 3.1 22 35-56 1-22 (121)
421 PRK06995 flhF flagellar biosyn 97.7 0.0016 3.4E-08 52.9 12.9 86 83-180 335-428 (484)
422 PRK14723 flhF flagellar biosyn 97.7 0.0012 2.6E-08 56.3 12.6 90 83-180 264-360 (767)
423 KOG0459 Polypeptide release fa 97.7 0.0001 2.2E-09 57.4 5.6 160 27-188 73-278 (501)
424 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00036 7.8E-09 43.6 7.5 69 36-119 2-71 (99)
425 PRK05703 flhF flagellar biosyn 97.7 0.00019 4.1E-09 57.6 7.5 87 83-180 300-394 (424)
426 COG3640 CooC CO dehydrogenase 97.7 0.00068 1.5E-08 49.3 9.5 47 102-151 151-197 (255)
427 cd03111 CpaE_like This protein 97.7 0.0008 1.7E-08 43.3 9.1 103 36-148 2-106 (106)
428 cd02042 ParA ParA and ParB of 97.7 0.0003 6.4E-09 45.0 7.1 82 36-130 2-84 (104)
429 PRK08118 topology modulation p 97.7 4.1E-05 8.9E-10 53.5 3.2 22 35-56 3-24 (167)
430 PF13555 AAA_29: P-loop contai 97.6 6.3E-05 1.4E-09 43.1 3.1 23 35-57 25-47 (62)
431 COG0563 Adk Adenylate kinase a 97.6 4.7E-05 1E-09 53.7 3.1 23 34-56 1-23 (178)
432 PRK12724 flagellar biosynthesi 97.6 0.0015 3.4E-08 51.9 11.4 135 33-178 223-394 (432)
433 cd02038 FleN-like FleN is a me 97.6 0.00035 7.6E-09 47.3 6.9 105 38-151 5-109 (139)
434 PRK07261 topology modulation p 97.6 5.9E-05 1.3E-09 53.0 3.1 22 35-56 2-23 (171)
435 PRK06731 flhF flagellar biosyn 97.6 0.0016 3.4E-08 49.1 10.6 135 34-178 76-246 (270)
436 KOG0066 eIF2-interacting prote 97.5 0.00067 1.5E-08 53.9 8.5 25 33-57 613-637 (807)
437 PF13671 AAA_33: AAA domain; P 97.5 7.9E-05 1.7E-09 50.5 3.0 21 36-56 2-22 (143)
438 KOG3929 Uncharacterized conser 97.5 0.00021 4.6E-09 52.5 5.2 146 29-179 41-235 (363)
439 COG4598 HisP ABC-type histidin 97.5 0.00048 1E-08 48.2 6.5 150 35-199 34-203 (256)
440 TIGR02475 CobW cobalamin biosy 97.5 0.0033 7.2E-08 49.1 11.9 21 36-56 7-27 (341)
441 KOG2423 Nucleolar GTPase [Gene 97.5 1.1E-05 2.3E-10 62.6 -1.9 72 17-93 291-362 (572)
442 KOG0469 Elongation factor 2 [T 97.5 0.00062 1.4E-08 54.7 7.7 128 33-164 19-176 (842)
443 COG1116 TauB ABC-type nitrate/ 97.5 9.7E-05 2.1E-09 54.1 3.1 22 36-57 32-53 (248)
444 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.8E-09 43.1 3.0 21 36-56 2-22 (69)
445 COG1136 SalX ABC-type antimicr 97.4 0.00018 3.9E-09 52.3 3.7 23 35-57 33-55 (226)
446 PF00005 ABC_tran: ABC transpo 97.4 0.00013 2.8E-09 49.1 2.8 22 35-56 13-34 (137)
447 PRK12723 flagellar biosynthesi 97.4 0.0023 4.9E-08 50.7 9.9 86 83-178 255-347 (388)
448 PF13521 AAA_28: AAA domain; P 97.4 0.00012 2.5E-09 51.0 2.4 22 35-56 1-22 (163)
449 PRK04195 replication factor C 97.4 0.0048 1E-07 50.6 11.9 23 34-56 40-62 (482)
450 KOG0780 Signal recognition par 97.3 0.00012 2.5E-09 56.8 2.2 43 83-126 184-233 (483)
451 PF04665 Pox_A32: Poxvirus A32 97.3 0.0002 4.3E-09 52.7 3.3 28 29-56 9-36 (241)
452 PF00004 AAA: ATPase family as 97.3 0.0002 4.2E-09 47.7 3.1 21 36-56 1-21 (132)
453 PF05621 TniB: Bacterial TniB 97.3 0.0016 3.5E-08 49.4 8.0 102 32-148 60-189 (302)
454 PRK06217 hypothetical protein; 97.3 0.00021 4.6E-09 50.7 3.2 23 34-56 2-24 (183)
455 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0015 3.3E-08 43.7 6.9 23 35-57 24-46 (133)
456 PRK03839 putative kinase; Prov 97.3 0.00022 4.8E-09 50.4 3.1 22 35-56 2-23 (180)
457 PLN02200 adenylate kinase fami 97.3 0.00036 7.9E-09 51.5 4.3 34 23-56 33-66 (234)
458 COG1120 FepC ABC-type cobalami 97.3 0.00022 4.7E-09 53.0 3.0 22 35-56 30-51 (258)
459 cd00071 GMPK Guanosine monopho 97.3 0.00025 5.3E-09 47.9 3.1 21 36-56 2-22 (137)
460 smart00382 AAA ATPases associa 97.3 0.00027 5.8E-09 47.1 3.3 26 35-60 4-29 (148)
461 PRK14738 gmk guanylate kinase; 97.3 0.00054 1.2E-08 49.6 5.0 27 30-56 10-36 (206)
462 cd03216 ABC_Carb_Monos_I This 97.3 0.0012 2.6E-08 45.9 6.5 23 35-57 28-50 (163)
463 TIGR00235 udk uridine kinase. 97.3 0.00031 6.8E-09 50.9 3.7 26 31-56 4-29 (207)
464 PRK10078 ribose 1,5-bisphospho 97.3 0.00027 5.8E-09 50.3 3.2 22 35-56 4-25 (186)
465 PF13238 AAA_18: AAA domain; P 97.3 0.00026 5.5E-09 46.9 3.0 21 36-56 1-21 (129)
466 TIGR02322 phosphon_PhnN phosph 97.3 0.00026 5.6E-09 50.0 3.1 22 35-56 3-24 (179)
467 PRK14530 adenylate kinase; Pro 97.3 0.00027 5.8E-09 51.6 3.2 21 35-55 5-25 (215)
468 PF03205 MobB: Molybdopterin g 97.3 0.00028 6.1E-09 47.8 3.1 22 35-56 2-23 (140)
469 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00028 6.2E-09 45.2 2.8 20 35-54 17-36 (107)
470 COG0194 Gmk Guanylate kinase [ 97.2 0.00028 6E-09 49.5 2.8 23 35-57 6-28 (191)
471 PRK13949 shikimate kinase; Pro 97.2 0.00032 7E-09 49.1 3.2 22 35-56 3-24 (169)
472 PRK05416 glmZ(sRNA)-inactivati 97.2 0.0042 9.1E-08 47.3 9.3 20 35-54 8-27 (288)
473 cd01130 VirB11-like_ATPase Typ 97.2 0.00034 7.4E-09 49.8 3.2 23 34-56 26-48 (186)
474 cd02036 MinD Bacterial cell di 97.2 0.013 2.7E-07 41.1 11.3 84 84-174 64-147 (179)
475 KOG1533 Predicted GTPase [Gene 97.2 0.00033 7.2E-09 50.8 3.1 21 34-54 3-23 (290)
476 PRK05480 uridine/cytidine kina 97.2 0.00043 9.3E-09 50.2 3.7 26 31-56 4-29 (209)
477 PRK01889 GTPase RsgA; Reviewed 97.2 0.00028 6E-09 55.4 2.9 23 35-57 197-219 (356)
478 cd03238 ABC_UvrA The excision 97.2 0.00038 8.2E-09 49.1 3.2 21 35-55 23-43 (176)
479 TIGR03263 guanyl_kin guanylate 97.2 0.00035 7.6E-09 49.3 3.1 22 35-56 3-24 (180)
480 PRK14532 adenylate kinase; Pro 97.2 0.00037 8.1E-09 49.6 3.2 23 34-56 1-23 (188)
481 PF03215 Rad17: Rad17 cell cyc 97.2 0.005 1.1E-07 50.7 9.9 85 108-195 133-229 (519)
482 cd02023 UMPK Uridine monophosp 97.2 0.00035 7.5E-09 50.2 3.0 21 36-56 2-22 (198)
483 PF02367 UPF0079: Uncharacteri 97.2 0.0021 4.5E-08 42.4 6.4 76 35-114 17-95 (123)
484 COG3638 ABC-type phosphate/pho 97.2 0.00036 7.8E-09 50.8 3.0 21 35-55 32-52 (258)
485 PRK08233 hypothetical protein; 97.2 0.00045 9.8E-09 48.7 3.5 24 33-56 3-26 (182)
486 cd03110 Fer4_NifH_child This p 97.2 0.0036 7.8E-08 44.1 8.1 84 82-174 92-175 (179)
487 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00038 8.2E-09 49.4 3.1 21 35-55 5-25 (188)
488 PF07728 AAA_5: AAA domain (dy 97.2 0.0004 8.7E-09 46.9 3.0 22 35-56 1-22 (139)
489 COG3839 MalK ABC-type sugar tr 97.1 0.00038 8.2E-09 53.8 3.0 22 36-57 32-53 (338)
490 PTZ00088 adenylate kinase 1; P 97.1 0.00047 1E-08 50.7 3.3 24 33-56 6-29 (229)
491 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00045 9.7E-09 50.4 3.2 22 35-56 32-53 (218)
492 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0048 1E-07 42.5 8.2 23 35-57 27-49 (157)
493 PRK00625 shikimate kinase; Pro 97.1 0.00045 9.9E-09 48.5 3.1 22 35-56 2-23 (173)
494 PRK10646 ADP-binding protein; 97.1 0.0058 1.2E-07 41.9 8.3 23 35-57 30-52 (153)
495 cd04178 Nucleostemin_like Nucl 97.1 0.0011 2.3E-08 46.6 4.9 44 108-153 1-44 (172)
496 cd01131 PilT Pilus retraction 97.1 0.00044 9.5E-09 49.8 3.0 22 36-57 4-25 (198)
497 KOG3347 Predicted nucleotide k 97.1 0.00045 9.7E-09 46.6 2.8 26 31-56 5-30 (176)
498 PRK14531 adenylate kinase; Pro 97.1 0.0005 1.1E-08 48.8 3.3 23 34-56 3-25 (183)
499 COG1117 PstB ABC-type phosphat 97.1 0.00038 8.3E-09 50.0 2.6 22 35-56 35-56 (253)
500 PF05673 DUF815: Protein of un 97.1 0.0015 3.3E-08 48.0 5.7 26 31-56 50-75 (249)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-40 Score=225.43 Aligned_cols=171 Identities=41% Similarity=0.720 Sum_probs=162.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
...++.+||+++|++|+|||+|+.+|..+.|...+..|++.++..+.+.+ ++..+++++|||+|+++++....+|++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 35678999999999999999999999999999999999999999999988 55558999999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQ 186 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~ 186 (200)
+++|+|||+++.+||+.+..|+.++.+....++|.++|+||+|+.+.+.++.++++.|+.+++++ ++++||+++.|+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhcccC
Q 028986 187 LFEVLITCTSSYC 199 (200)
Q Consensus 187 ~~~~i~~~~~~~~ 199 (200)
+|..|...+.+++
T Consensus 163 ~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 163 AFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888765
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=215.84 Aligned_cols=167 Identities=57% Similarity=0.961 Sum_probs=158.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...+||+++|..++|||||+-++..+.|.+...+|++.-+..+.+.+.+. .+++.+|||+|+++|..+.+.|+++++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~-~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDN-TIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCc-EEEEEEEEcCCcccccccccceecCCcEE
Confidence 46789999999999999999999999999988999999999999998666 49999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
|+|||+++.+||..++.|+..+.+...+++-+.+|+||+|+.+.+++..+++..+++..+..++++||+++.|+.++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccc
Q 028986 191 LITCTSSY 198 (200)
Q Consensus 191 i~~~~~~~ 198 (200)
|.+.+...
T Consensus 162 Ia~~lp~~ 169 (200)
T KOG0092|consen 162 IAEKLPCS 169 (200)
T ss_pred HHHhccCc
Confidence 99988764
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=216.30 Aligned_cols=170 Identities=44% Similarity=0.719 Sum_probs=161.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+++|+++||||+|+.+|..+.+...+..+.+.++..+++..+. ..+.+++|||.|++++......|++.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 668899999999999999999999999999999999999999999998854 5599999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++++|||+++..||+.+..|+..+.++...++|.++|+||+|+...++++.+..+++|.++|++++|+||++|.||.++|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccC
Q 028986 189 EVLITCTSSYC 199 (200)
Q Consensus 189 ~~i~~~~~~~~ 199 (200)
..|.+.+.++.
T Consensus 167 ~~La~~i~~k~ 177 (207)
T KOG0078|consen 167 LSLARDILQKL 177 (207)
T ss_pred HHHHHHHHhhc
Confidence 99998887543
No 4
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.8e-36 Score=217.52 Aligned_cols=164 Identities=36% Similarity=0.655 Sum_probs=148.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+.|+++|..|||||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 369999999999999999999999988888888888877777764 4558999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
||++++++|+.+..|+..+......++|+++|+||+|+...+++..++..++++++ ++.++++||++|.|++++|++|+
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999888776678999999999999877888888889999875 78999999999999999999999
Q ss_pred Hhhccc
Q 028986 193 TCTSSY 198 (200)
Q Consensus 193 ~~~~~~ 198 (200)
+.+.+.
T Consensus 160 ~~~~~~ 165 (202)
T cd04120 160 DDILKK 165 (202)
T ss_pred HHHHHh
Confidence 887654
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=207.41 Aligned_cols=166 Identities=43% Similarity=0.764 Sum_probs=155.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.+|++++|+.++||||||++++.+.|...|..|++.++...++.+.+. .+++++|||+|+++++.+.+.|++++.++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~-~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc-EEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 44589999999999999999999999999999999999999999988555 59999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCC-CCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
|+|||+++..||+...+|++.+...... ++-+++|+||.||.+.+++..++....++++++.|+++|++.|.||.++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999999999877655 588999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 028986 190 VLITCTSS 197 (200)
Q Consensus 190 ~i~~~~~~ 197 (200)
.|...+..
T Consensus 179 rIaa~l~~ 186 (221)
T KOG0094|consen 179 RIAAALPG 186 (221)
T ss_pred HHHHhccC
Confidence 98877654
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.8e-36 Score=213.94 Aligned_cols=166 Identities=36% Similarity=0.592 Sum_probs=148.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+..+||+|+|..|||||||+++|..+.+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++.+|++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45689999999999999999999998887777777777775555655 45568999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
|+|||++++.+++.+..|+..+... .+++|+++|+||.|+...+.+..++++.+++.+++++++|||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999999776 368999999999999887788899999999999999999999999999999999
Q ss_pred HHHhhccc
Q 028986 191 LITCTSSY 198 (200)
Q Consensus 191 i~~~~~~~ 198 (200)
|++.+..+
T Consensus 162 l~~~i~~~ 169 (189)
T cd04121 162 LARIVLMR 169 (189)
T ss_pred HHHHHHHh
Confidence 99877654
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-37 Score=206.69 Aligned_cols=165 Identities=41% Similarity=0.795 Sum_probs=156.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
..+.+|++++|+.|||||+|+.+++...|.+.+..|.+.++..+.+.+ +++++++++|||.|++.+......|++.+-+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 356889999999999999999999999999999999999999999998 5556999999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|||+++++||..+..|+..++++..++.-+++++||+|+...++++.++.+.||++++..++++||+++.++++.|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhh
Q 028986 190 VLITCT 195 (200)
Q Consensus 190 ~i~~~~ 195 (200)
.....+
T Consensus 162 nta~~I 167 (216)
T KOG0098|consen 162 NTAKEI 167 (216)
T ss_pred HHHHHH
Confidence 776654
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=200.72 Aligned_cols=167 Identities=44% Similarity=0.759 Sum_probs=155.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....+||+++|.+|+|||||+.++..+.|++....+++.++..+.+.+ ++..+++.+|||+|+++++.+...|++.+-+
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 466799999999999999999999999999999989999999888888 4555999999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
+|+|||++.+++|..+..|++++...+ .+++-.++|+||+|...++.++.++..+|++++++-+++|||++.++++.+|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999999998776 5677788999999998889999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
+.+++++.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999998865
No 9
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.8e-35 Score=204.77 Aligned_cols=164 Identities=38% Similarity=0.715 Sum_probs=146.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+++|++|||||||+++|.+..+.+.+.++.+.++....+.. ++..+++.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999999888877777777776666655 4445899999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.++++..+++++++||++|.|+.++|.+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998777667899999999999988878888899999999999999999999999999999999
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87643
No 10
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-36 Score=195.73 Aligned_cols=169 Identities=36% Similarity=0.636 Sum_probs=157.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+..+|++|+|...+|||||+.++.+..|.+.+..+.+.++..+++.- +...+++++|||.|++.++.+...++++++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 56679999999999999999999999999999999999987776544 44559999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
|++||+++.+||..++.|.-.+...+..++|+|+|+||||+..++.++.+....++.++|..+|++|++.+.|++++|+.
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCC
Q 028986 191 LITCTSSYCS 200 (200)
Q Consensus 191 i~~~~~~~~~ 200 (200)
++..+.+.+|
T Consensus 178 lv~~Ic~kms 187 (193)
T KOG0093|consen 178 LVDIICDKMS 187 (193)
T ss_pred HHHHHHHHhh
Confidence 9998876553
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.1e-34 Score=205.48 Aligned_cols=162 Identities=28% Similarity=0.574 Sum_probs=143.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...+||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++++..++..+++++|++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 46789999999999999999999999998888888876653 44555 45568999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
|+|||++++.||+.+ ..|+..+.+.. ++.|+++|+||.|+.+ .+.++.+++.++++.+++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 89999998764 5799999999999854 245889999999999996 89999
Q ss_pred cCCCCCC-HHHHHHHHHHhh
Q 028986 177 SAKTADN-INQLFEVLITCT 195 (200)
Q Consensus 177 S~~~~~~-i~~~~~~i~~~~ 195 (200)
||+++.| |+++|..+++.+
T Consensus 160 SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 160 SALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 9999998 999999998864
No 12
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.6e-34 Score=202.69 Aligned_cols=165 Identities=43% Similarity=0.760 Sum_probs=147.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+... +..+.+.+||++|++.+...+..+++++|+++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999888888888877766666654 44589999999999999988999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
+|||++++.+++.+..|+..+.+....++|+++|+||.|+.+.+.+..+++..++..++++++++|++++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998777777888888999999999999999999999999999
Q ss_pred HHhhcc
Q 028986 192 ITCTSS 197 (200)
Q Consensus 192 ~~~~~~ 197 (200)
++++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998754
No 13
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.1e-34 Score=204.42 Aligned_cols=168 Identities=32% Similarity=0.623 Sum_probs=148.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecC---------CcEEEEEEEeCCChhhhhhccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD---------STTVKFEIWDTAGQERYAALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~ 101 (200)
++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+.. +..+.+.+||++|++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 3568999999999999999999999999888888888777666555532 4458899999999999999999
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
.+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++.++++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987653 45789999999999987777888888999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccc
Q 028986 181 ADNINQLFEVLITCTSSY 198 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~~ 198 (200)
+.|++++|++|.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2e-34 Score=203.06 Aligned_cols=160 Identities=36% Similarity=0.668 Sum_probs=141.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|.+++|||||+.++..+.+...+.++.+..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 6899999999999999999999999888888887665 344555 55669999999999999999999999999999999
Q ss_pred EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCC----------cCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKR----------EVPAQDGIEYAEKNGM-FFIETSAKTA 181 (200)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~ 181 (200)
||++++.||+.+ ..|+..+.... .++|+++|+||+|+.+.+ .+..+++.++++..++ .+++|||++|
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999999999998 78999997764 579999999999996542 4778899999999988 5999999999
Q ss_pred CCHHHHHHHHHHhhc
Q 028986 182 DNINQLFEVLITCTS 196 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~ 196 (200)
.||+++|+.+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 15
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.2e-34 Score=199.98 Aligned_cols=160 Identities=40% Similarity=0.693 Sum_probs=144.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-GIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 489999999999999999999999888778888877766666664 4558899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++++++.+..|+..+........|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|.+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 99999999999999999988776567999999999999887778888999999999999999999999999999999986
Q ss_pred h
Q 028986 194 C 194 (200)
Q Consensus 194 ~ 194 (200)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 5
No 16
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.7e-34 Score=206.51 Aligned_cols=164 Identities=34% Similarity=0.632 Sum_probs=145.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999888888888888877777777546668999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF 188 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 188 (200)
||++++.+++.+..|+..+.... ..++|+++|+||+|+...+....+++.++++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876532 3578999999999997666778889999999988 689999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|++.+.+
T Consensus 161 ~~l~~~l~~ 169 (201)
T cd04107 161 RFLVKNILA 169 (201)
T ss_pred HHHHHHHHH
Confidence 999988754
No 17
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-35 Score=200.92 Aligned_cols=170 Identities=48% Similarity=0.818 Sum_probs=161.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
++..++.+||+++|++++|||-|+.++..++|.....+|++.++....+.+ +++.+..+||||+|+++|+.....|++.
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhcc
Confidence 456789999999999999999999999999999999999999999988888 5666999999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
+.++++|||++...+|+.+..|+.+++.+...++++++|+||+||.+.+.+..++.+.+++..+..++++||.++.|+++
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 028986 187 LFEVLITCTSS 197 (200)
Q Consensus 187 ~~~~i~~~~~~ 197 (200)
+|..++..+-.
T Consensus 167 aF~~~l~~I~~ 177 (222)
T KOG0087|consen 167 AFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHH
Confidence 99988877644
No 18
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=6.3e-34 Score=199.31 Aligned_cols=162 Identities=38% Similarity=0.663 Sum_probs=144.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 68999999999999999999999987777777776665555544 45558999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++.+++.+..|+..+.+......|+++|+||+|+...+....++..+++..++++++++|++++.|++++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998776668999999999999877777778888888888999999999999999999999998
Q ss_pred hhc
Q 028986 194 CTS 196 (200)
Q Consensus 194 ~~~ 196 (200)
.+.
T Consensus 161 ~~~ 163 (165)
T cd01865 161 IIC 163 (165)
T ss_pred HHH
Confidence 764
No 19
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=6e-34 Score=199.60 Aligned_cols=164 Identities=43% Similarity=0.752 Sum_probs=146.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+|+|++|||||||+++|.+..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 4799999999999999999999988877777777777666666553 455889999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
|||+++++++..+..|+..+......+.|+++|+||.|+.....+..+++..++...+++++++|+++|.|++++|.+|+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999999877656799999999999977777778888999999999999999999999999999999
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01869 161 REIKK 165 (166)
T ss_pred HHHHh
Confidence 98764
No 20
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=195.77 Aligned_cols=168 Identities=35% Similarity=0.673 Sum_probs=152.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.+...+||+|+|++|+|||||++++.+.+|...+..+++.++..+.+.+. +..+.+++|||+|++++..+.-.+++.+|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsLg~aFYRgaD 83 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSLGVAFYRGAD 83 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhcccceecCCc
Confidence 45667899999999999999999999999999999999999999999986 66699999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCC--CcCCHHHHHHHHHHc-CCeEEEecCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEK--REVPAQDGIEYAEKN-GMFFIETSAKTA 181 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~S~~~~ 181 (200)
..+++||+.++.||+.+..|.+++..... ..-|+||++||+|+... ++++...++.+|... +++||++|||+.
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 99999999999999999999998765543 45789999999999653 788999999999876 679999999999
Q ss_pred CCHHHHHHHHHHhhcc
Q 028986 182 DNINQLFEVLITCTSS 197 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~~ 197 (200)
.||.+.|+.+...+.+
T Consensus 164 ~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALA 179 (210)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999887654
No 21
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.8e-34 Score=207.08 Aligned_cols=164 Identities=34% Similarity=0.548 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999988888888888887777777666668999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
||++++++++.+..|+..+.+.. ..++|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999987754 245789999999999877778888889999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9988754
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.4e-34 Score=201.27 Aligned_cols=163 Identities=31% Similarity=0.503 Sum_probs=143.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+.+ ++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 47999999999999999999999998877777776555 334444 4555889999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.+.. ..++|+++|+||+|+...+.++.++..++++.+++++++|||++|.|++++|++|
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 999999999999998988887643 4679999999999998777788889999999999999999999999999999999
Q ss_pred HHhhcc
Q 028986 192 ITCTSS 197 (200)
Q Consensus 192 ~~~~~~ 197 (200)
++.+.+
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 987764
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.8e-34 Score=201.38 Aligned_cols=160 Identities=27% Similarity=0.560 Sum_probs=140.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+......+++++|++|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 478999999999999999999999988888888776653 44555 4456899999999999999999999999999999
Q ss_pred EEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEecC
Q 028986 113 VYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSA 178 (200)
Q Consensus 113 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~ 178 (200)
|||+++++||+.+ ..|+..+.+.. ++.|+++|+||.|+.. .+.+..+++.++++.+++ +|++|||
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 9999999999996 89999998774 5799999999999854 245788999999999997 7999999
Q ss_pred CCCCC-HHHHHHHHHHhh
Q 028986 179 KTADN-INQLFEVLITCT 195 (200)
Q Consensus 179 ~~~~~-i~~~~~~i~~~~ 195 (200)
++|.+ ++++|..+++..
T Consensus 158 ~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 158 FTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CcCCcCHHHHHHHHHHHH
Confidence 99995 999999998854
No 24
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-33 Score=205.00 Aligned_cols=166 Identities=38% Similarity=0.687 Sum_probs=148.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999988887788888887777777766767899999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.+.. ....|+++|+||.|+...+.+..++..++++.++++++++|++++.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999987654 3457889999999998777788888899999999999999999999999999999
Q ss_pred HHhhccc
Q 028986 192 ITCTSSY 198 (200)
Q Consensus 192 ~~~~~~~ 198 (200)
.+.+.++
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9887654
No 25
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.9e-33 Score=196.88 Aligned_cols=163 Identities=48% Similarity=0.825 Sum_probs=145.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..+||+|+|+++||||||+++|.+..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 35799999999999999999999998887788888877777776664 44578999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
+|||++++.+++.+..|+..+.+....++|+++|+||.|+...++...++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766679999999999998777778888889998889999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
++.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.8e-33 Score=201.31 Aligned_cols=163 Identities=30% Similarity=0.566 Sum_probs=140.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..+||+++|+.+||||||++++..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++++..++..+++++|++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 3589999999999999999999999988888888876553 34444 456689999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEEec
Q 028986 112 VVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIETS 177 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 177 (200)
+|||++++.+|+.+. .|+..+... ..++|+++|+||.|+.+. ..+..+++.++++.++ ++++++|
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 999999999999996 688877765 357999999999999654 2356778889999888 5899999
Q ss_pred CCCCCCHHHHHHHHHHhhcc
Q 028986 178 AKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~~~ 197 (200)
|++|.|++++|++|++.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 27
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.8e-33 Score=197.24 Aligned_cols=162 Identities=31% Similarity=0.647 Sum_probs=144.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|++..+...+.++.+.++....+... +..+.+++||++|++.+...+..+++.+|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999888888888888766666664 4558999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCC-----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGS-----PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
||++++.+++.+..|+..+..... ...|+++|+||+|+........++...++...+++++++|++++.|+.++|
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999877643 579999999999997666677888888888889999999999999999999
Q ss_pred HHHHHhhc
Q 028986 189 EVLITCTS 196 (200)
Q Consensus 189 ~~i~~~~~ 196 (200)
++|++.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998764
No 28
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=8.3e-34 Score=198.07 Aligned_cols=161 Identities=37% Similarity=0.726 Sum_probs=149.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+|+|+++||||||+++|.+..+...+.++.+.+.....+... +..+.+.+||++|++.+......++.++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888888888888888775 56689999999999999888899999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986 115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
|+++++|++.+..|+..+......++|+++|+||.|+.+.+++..++++++++.++++++++|++++.++.++|..+++.
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999998877679999999999998888899999999999999999999999999999999999988
Q ss_pred hc
Q 028986 195 TS 196 (200)
Q Consensus 195 ~~ 196 (200)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 29
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.7e-33 Score=205.31 Aligned_cols=164 Identities=26% Similarity=0.498 Sum_probs=143.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...+||+++|+.|||||||+++|..+.|...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+...+..+++++|++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 45789999999999999999999999998888888877664 34544 45568999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.. .+.+..++++++++.+++ .|++|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 999999999999974 89999998764 5789999999999854 256888999999999998 69999
Q ss_pred cCCCCC-CHHHHHHHHHHhhcc
Q 028986 177 SAKTAD-NINQLFEVLITCTSS 197 (200)
Q Consensus 177 S~~~~~-~i~~~~~~i~~~~~~ 197 (200)
||++|. |++++|..++..+.+
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHH
Confidence 999997 899999999887654
No 30
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.6e-33 Score=203.95 Aligned_cols=168 Identities=45% Similarity=0.764 Sum_probs=150.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
+.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||++|++++...+..+++.++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 34577899999999999999999999998877777888888877777664 45589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++++|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998777788888899998899999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|++.+.+
T Consensus 167 ~~l~~~i~~ 175 (216)
T PLN03110 167 QTILLEIYH 175 (216)
T ss_pred HHHHHHHHH
Confidence 999988754
No 31
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.5e-33 Score=195.53 Aligned_cols=163 Identities=42% Similarity=0.761 Sum_probs=143.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46899999999999999999999988877777777766666666553 44578999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 190 (200)
+|||++++.+++.+..|+..+......++|+++|+||+|+...++...+++..+++..++ .++++|+++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999877667899999999999987777778888888888876 6899999999999999999
Q ss_pred HHHhh
Q 028986 191 LITCT 195 (200)
Q Consensus 191 i~~~~ 195 (200)
|.+.+
T Consensus 161 l~~~l 165 (165)
T cd01864 161 MATEL 165 (165)
T ss_pred HHHhC
Confidence 98753
No 32
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.8e-33 Score=203.36 Aligned_cols=166 Identities=28% Similarity=0.507 Sum_probs=143.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+++|++|||||||+++++.+.+...+.++.+.++....+...+ ..+.+.+||++|++.+...+..+++.+|
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 87 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC-eEEEEEEEECCCchhhhhhhHHHccccc
Confidence 347789999999999999999999999988888888888887766665543 4489999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+.+. ..+.|+++|+||+|+.. +.+..+++ .+++..++.++++||++|.|++++|
T Consensus 88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f 164 (219)
T PLN03071 88 CAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164 (219)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHH
Confidence 999999999999999999999999876 45799999999999854 33344444 7777788999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
.+|++.+.+.
T Consensus 165 ~~l~~~~~~~ 174 (219)
T PLN03071 165 LYLARKLAGD 174 (219)
T ss_pred HHHHHHHHcC
Confidence 9999888643
No 33
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.9e-33 Score=194.53 Aligned_cols=161 Identities=43% Similarity=0.761 Sum_probs=144.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|+++||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 589999999999999999999998887777777777766666664 4458899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++.++..+..|+..+.....+++|+++|+||.|+.....+..+++..++...++.++++|++++.|++++|+++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776788999999999999877778888889999999999999999999999999999987
Q ss_pred hh
Q 028986 194 CT 195 (200)
Q Consensus 194 ~~ 195 (200)
.+
T Consensus 160 ~~ 161 (161)
T cd04113 160 SI 161 (161)
T ss_pred hC
Confidence 63
No 34
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.9e-33 Score=198.56 Aligned_cols=162 Identities=27% Similarity=0.550 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|+.|+|||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 589999999999999999999999888888888888766666664 4568999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-----CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
||++++.+++.+..|+..+.+......| ++|+||+|+... .....++..++++..+++++++||++|.|++++|
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999998876555667 578999998531 1122456677888889999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
+++.+.+.+
T Consensus 159 ~~l~~~l~~ 167 (182)
T cd04128 159 KIVLAKAFD 167 (182)
T ss_pred HHHHHHHHh
Confidence 999987654
No 35
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.3e-33 Score=199.05 Aligned_cols=164 Identities=34% Similarity=0.655 Sum_probs=145.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-NKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 589999999999999999999998877677788777766666654 4458899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++++++.+..|+..+.......+|+++|+||.|+.+...+..++...++...+++++++|++++.|++++|++|++
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998776667899999999999877777788888888888999999999999999999999999
Q ss_pred hhccc
Q 028986 194 CTSSY 198 (200)
Q Consensus 194 ~~~~~ 198 (200)
.+.++
T Consensus 160 ~~~~~ 164 (188)
T cd04125 160 LIIKR 164 (188)
T ss_pred HHHHH
Confidence 87653
No 36
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.9e-33 Score=194.95 Aligned_cols=165 Identities=39% Similarity=0.772 Sum_probs=146.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..+||+|+|++|+|||||++++.+..+...+.++.+.++....+... +....+.+||++|++++...+..+++.+|+++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45899999999999999999999998877777777777766666654 45579999999999999988899999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
+|+|++++.+++.+..|+..+.....++.|+++|+||.|+.....+..++...++...++.++++|++.+.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998766777888888998899999999999999999999999
Q ss_pred HHhhcc
Q 028986 192 ITCTSS 197 (200)
Q Consensus 192 ~~~~~~ 197 (200)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 987743
No 37
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4e-34 Score=189.91 Aligned_cols=166 Identities=39% Similarity=0.709 Sum_probs=154.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++++++|++-+|||||++.++.+++..-..|+.+.++..+.+....|..+++++|||+|+++++.....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCC-CC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGS-PD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|||+++++||+.+..|+.....+.. +. +-+++|++|+|+...+++..+++++++..++..++++|+++|.|+++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999998766543 44 4478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 028986 189 EVLITCTS 196 (200)
Q Consensus 189 ~~i~~~~~ 196 (200)
..|.+.+-
T Consensus 166 ~mlaqeIf 173 (213)
T KOG0091|consen 166 DMLAQEIF 173 (213)
T ss_pred HHHHHHHH
Confidence 99988764
No 38
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6.8e-33 Score=199.56 Aligned_cols=165 Identities=37% Similarity=0.689 Sum_probs=145.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45789999999999999999999999887777778777776666655 34557899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|||++++++++.+..|+..+... ....|+++|+||+|+.....+..++...++...+++++++|++++.|+.++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 9999999999999999999998765 457899999999999877777778888898888999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+..
T Consensus 162 l~~~~~~ 168 (199)
T cd04110 162 ITELVLR 168 (199)
T ss_pred HHHHHHH
Confidence 9987754
No 39
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=6.6e-33 Score=193.49 Aligned_cols=160 Identities=34% Similarity=0.624 Sum_probs=141.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec-CCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
+||+++|++++|||||+++|+++.+...+.++.+.++....+.+. .+..+.+++||+||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998877777888877766666664 1445899999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
|||++++++++.+..|+..+.+. ..++|+++|+||.|+.....+..+++..+++..+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988765 45799999999999987777778888899999999999999999999999999997
Q ss_pred Hh
Q 028986 193 TC 194 (200)
Q Consensus 193 ~~ 194 (200)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.3e-33 Score=195.16 Aligned_cols=161 Identities=37% Similarity=0.573 Sum_probs=137.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+|+|++|||||||++++..+.+...+.++.+..+ ...+.+ ++..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 36999999999999999999999888776666665333 344444 4455889999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++++++++||+++.|+.++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887653 4579999999999997766677777788888888999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
++.+
T Consensus 159 ~~~~ 162 (163)
T cd04136 159 VRQI 162 (163)
T ss_pred HHhc
Confidence 8765
No 41
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.3e-34 Score=186.02 Aligned_cols=164 Identities=38% Similarity=0.683 Sum_probs=153.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
..-++.+|+|++|+|||+|+.++..+.|...|..+++.++..+++.+. |..++++|||++|++.++.....|++..+++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 456788999999999999999999999999999999999999998885 7779999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|||.++.+||.++.+|++.++..+. .+|-++|+||.|..+.+.+..+++..++...++.+|++|+++++|++..|.-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999999999998854 8889999999999999999999999999999999999999999999999998
Q ss_pred HHHhhc
Q 028986 191 LITCTS 196 (200)
Q Consensus 191 i~~~~~ 196 (200)
|.++..
T Consensus 164 it~qvl 169 (198)
T KOG0079|consen 164 ITKQVL 169 (198)
T ss_pred HHHHHH
Confidence 887654
No 42
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.3e-33 Score=198.27 Aligned_cols=164 Identities=40% Similarity=0.706 Sum_probs=142.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
+||+|+|++|||||||+++|.+..+.. .+.++.+.++....+.+ ++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 589999999999999999999988753 45566666665555555 4455899999999999999888899999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
|+|++++.+++.+..|+..+......++|+++|+||.|+...+.+..++...++..++++++++|+++|.|++++|.+|.
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887666899999999999977677777888889888999999999999999999999999
Q ss_pred Hhhccc
Q 028986 193 TCTSSY 198 (200)
Q Consensus 193 ~~~~~~ 198 (200)
+.+.+.
T Consensus 160 ~~~~~~ 165 (191)
T cd04112 160 KELKHR 165 (191)
T ss_pred HHHHHh
Confidence 888654
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.5e-33 Score=195.77 Aligned_cols=159 Identities=30% Similarity=0.578 Sum_probs=137.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.. ++..+++.+||++|++++...+..+++++|++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 68999999999999999999999987778888876664 34444 45568999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEEecCC
Q 028986 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIETSAK 179 (200)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~ 179 (200)
||++++++++.+. .|+..+... ..++|+++|+||.|+... +.+..+++.++++..+ +.+++|||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 698888765 357999999999998543 4567788888988887 689999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 028986 180 TADNINQLFEVLITCT 195 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~ 195 (200)
+|.|++++|+.+++..
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 44
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=185.56 Aligned_cols=169 Identities=40% Similarity=0.707 Sum_probs=156.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
++..++-+|++++|+.|+|||.|++++...++......+++.++..+.+.+ .++.+++++|||.|+++++.....|++.
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 345678899999999999999999999999999999999999998887777 4566999999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
+-+.++|||++++++|+.+..|+..++....+++-+++++||.|+...+++...++..|+.+..+.+.++|+++|+|+++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 028986 187 LFEVLITCTS 196 (200)
Q Consensus 187 ~~~~i~~~~~ 196 (200)
+|-...+.+.
T Consensus 162 aFl~c~~tIl 171 (214)
T KOG0086|consen 162 AFLKCARTIL 171 (214)
T ss_pred HHHHHHHHHH
Confidence 9977666553
No 45
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.3e-32 Score=192.23 Aligned_cols=164 Identities=45% Similarity=0.801 Sum_probs=145.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.. ++..+++.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999998887777777777776666665 44447899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++.+++.+..|+..+......++|+++|+||+|+....+...+.+.+++..++++++++|++++.|+++++++|.+
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776678999999999998776677788888899888999999999999999999999999
Q ss_pred hhccc
Q 028986 194 CTSSY 198 (200)
Q Consensus 194 ~~~~~ 198 (200)
.+.++
T Consensus 160 ~~~~~ 164 (164)
T smart00175 160 EILKR 164 (164)
T ss_pred HHhhC
Confidence 88653
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.5e-33 Score=198.20 Aligned_cols=165 Identities=34% Similarity=0.540 Sum_probs=142.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..+||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+. +..+.+.+|||+|++++..++..+++.+|+++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-EETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-CEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 468999999999999999999999888777777776655 4444553 45588999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+|||++++++++.+..|+..+.+.. ..++|+++|+||+|+.....+..++...+++.++++++++||+++.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999999887653 457899999999999776667777888888888999999999999999999999
Q ss_pred HHHhhccc
Q 028986 191 LITCTSSY 198 (200)
Q Consensus 191 i~~~~~~~ 198 (200)
|++.+.+.
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99877653
No 47
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.6e-33 Score=199.12 Aligned_cols=162 Identities=34% Similarity=0.551 Sum_probs=139.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+|+|.+|||||||+++|..+.+...+.++.+..+. ..+.+ ++..+.+++|||+|++++...+..+++.+|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 5899999999999999999998887777777665543 33444 445578999999999999999999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++..++++++++||++|.|++++|++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999998886653 2578999999999998777778888888888889999999999999999999999
Q ss_pred HHhhccc
Q 028986 192 ITCTSSY 198 (200)
Q Consensus 192 ~~~~~~~ 198 (200)
++.+.+.
T Consensus 159 ~~~l~~~ 165 (190)
T cd04144 159 VRALRQQ 165 (190)
T ss_pred HHHHHHh
Confidence 9887654
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=7.1e-33 Score=193.77 Aligned_cols=162 Identities=36% Similarity=0.579 Sum_probs=139.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.. ++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 46899999999999999999999887776777766554 344444 3455889999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||.+++.+++.+..|+..+... ...+.|+++|+||+|+.....+..++...+++.++++++++||+++.|++++|.+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999888664 35679999999999998776677777788888889999999999999999999999
Q ss_pred HHhhc
Q 028986 192 ITCTS 196 (200)
Q Consensus 192 ~~~~~ 196 (200)
.+++.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 49
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.8e-32 Score=190.73 Aligned_cols=161 Identities=30% Similarity=0.525 Sum_probs=141.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC--CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+||+++|++|||||||+++|... .+...+.++.+.++....+....+..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667777888878777777776667799999999999998888899999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+....++...+...+....+++++++|++++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999988764 578999999999997776667767677777788999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8875
No 50
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.1e-32 Score=191.52 Aligned_cols=163 Identities=31% Similarity=0.607 Sum_probs=140.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +..+.+.+||+||++++...+..+++.+|++++||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 79999999999999999999999988888888888766666664 55589999999999999999999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|++++.+++.+..|+..+.+.. ....|+++|+||.|+..... ...+++..++.+++++++++||+++.|+.++|+.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999876543 34578999999999865433 34566677888888999999999999999999999
Q ss_pred HHhhccc
Q 028986 192 ITCTSSY 198 (200)
Q Consensus 192 ~~~~~~~ 198 (200)
.+.+.+.
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9987653
No 51
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.5e-32 Score=190.02 Aligned_cols=162 Identities=62% Similarity=1.015 Sum_probs=144.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+|+|+++||||||+++|.+..+.+...++.+..+....+.+. +..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 4799999999999999999999998877677777777766666664 455899999999999998888889999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
|+|++++++++.+..|+..+.......+|+++++||.|+........++...++...++.++++|+++|.|+.++|++|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887667899999999999876666777888888988899999999999999999999999
Q ss_pred Hhh
Q 028986 193 TCT 195 (200)
Q Consensus 193 ~~~ 195 (200)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 876
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.3e-32 Score=189.76 Aligned_cols=161 Identities=43% Similarity=0.786 Sum_probs=142.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|+++||||||+++|++..+...+.++.+.++....+... +..+++++||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999998877777778877777777664 4447899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++.+++.+..|+..+......+.|+++|+||+|+........++...+++..+++++++|++++.|+++++++|.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999987665557999999999999766677788888888888999999999999999999999987
Q ss_pred hh
Q 028986 194 CT 195 (200)
Q Consensus 194 ~~ 195 (200)
.+
T Consensus 160 ~l 161 (161)
T cd01861 160 AL 161 (161)
T ss_pred hC
Confidence 53
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.4e-32 Score=191.46 Aligned_cols=160 Identities=31% Similarity=0.581 Sum_probs=137.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+.. ++..+.+.+||++|++.+...+..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 58999999999999999999988877777777777766555554 45568999999999999888888999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++.+++.+..|+..+..... ++|+++|+||+|+... ... .+..++++..+++++++||++|.|++++|++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 999999999999999999987754 8999999999998633 333 3345677777889999999999999999999998
Q ss_pred hhcc
Q 028986 194 CTSS 197 (200)
Q Consensus 194 ~~~~ 197 (200)
.+.+
T Consensus 157 ~~~~ 160 (166)
T cd00877 157 KLLG 160 (166)
T ss_pred HHHh
Confidence 8764
No 54
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3e-32 Score=197.62 Aligned_cols=166 Identities=37% Similarity=0.767 Sum_probs=147.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.+||+|+|++|+|||||+++|.+..+.+.+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++.+|++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 456899999999999999999999998877777788877766666664 4457899999999999998889999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|||++++.+++.+..|+..+........|+++|+||+|+...+.+..++..++++.++++++++|++++.|++++|++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887766678999999999999877778888999999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
+++.+.+
T Consensus 163 l~~~~~~ 169 (210)
T PLN03108 163 TAAKIYK 169 (210)
T ss_pred HHHHHHH
Confidence 9887753
No 55
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.2e-32 Score=190.94 Aligned_cols=163 Identities=34% Similarity=0.633 Sum_probs=140.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...+||+++|+++||||||+++|.++.+.+.+.++.+.++....+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 46789999999999999999999999888777777777766666655 45558999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNIN 185 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 185 (200)
++|||++++++++.+..|+..+.... ..++|+++|+||.|+. .+.+..+++.++++.++. +++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998876543 2568999999999986 455677888899988874 79999999999999
Q ss_pred HHHHHHHHhh
Q 028986 186 QLFEVLITCT 195 (200)
Q Consensus 186 ~~~~~i~~~~ 195 (200)
++|+++++.+
T Consensus 161 ~~~~~~~~~~ 170 (170)
T cd04116 161 AAFEEAVRRV 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.2e-32 Score=189.94 Aligned_cols=161 Identities=33% Similarity=0.577 Sum_probs=136.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|.+..+.+...++.+.+.......+ ++..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 58999999999999999999999887777666666555544444 45568999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
||++++.+++.+..|+..+.+. ..+.|+++|+||+|+... ...+...++...+++++++||+++.|++++|+.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999998765 457899999999998432 134455677777899999999999999999999999
Q ss_pred hhcccC
Q 028986 194 CTSSYC 199 (200)
Q Consensus 194 ~~~~~~ 199 (200)
.+.+++
T Consensus 156 ~~~~~~ 161 (161)
T cd04124 156 LAVSYK 161 (161)
T ss_pred HHHhcC
Confidence 887763
No 57
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2e-32 Score=198.74 Aligned_cols=158 Identities=35% Similarity=0.603 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|.+++|||||+++|..+.+.. +.++.+..+..... ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV 74 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILT 74 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence 589999999999999999999998864 45666655543332 237899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-------------------CCcCCHHHHHHHHHHcC----
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-------------------KREVPAQDGIEYAEKNG---- 170 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~---- 170 (200)
||++++.+|+.+..|+..+.+....++|+++|+||+|+.. .+.+..+++.+++++.+
T Consensus 75 ~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 75 YDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 9999999999998888877766566799999999999965 56788899999998876
Q ss_pred ----------CeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 171 ----------MFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 171 ----------~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++|++|||++|.||+++|..+++.+..
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999987653
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.3e-32 Score=191.01 Aligned_cols=161 Identities=34% Similarity=0.562 Sum_probs=137.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+++|.+|+|||||++++..+.+.+.+.++.+ ......+.. ++..+.+++||++|++++..++..+++++|++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 47899999999999999999999988777666654 333445555 4555789999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.+.. ..++|+++|+||+|+.....+..++...++...+++++++||+++.|+.++|.++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887653 4689999999999997666666677788888888999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8765
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.8e-32 Score=191.18 Aligned_cols=163 Identities=36% Similarity=0.693 Sum_probs=142.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccCccEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRGAAVAV 111 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i 111 (200)
.+||+++|++|||||||+++++...+...+.++.+.++....+... +..+.+.+||++|++++. ..+..+++++|+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 4799999999999999999999988877777777777766666664 445899999999998876 57888899999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC---CCCHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT---ADNINQL 187 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~ 187 (200)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+...+++..++..++++..+++++++||++ +.++.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 9999999999999999999887654 46799999999999988878888888899999999999999999 8999999
Q ss_pred HHHHHHhhc
Q 028986 188 FEVLITCTS 196 (200)
Q Consensus 188 ~~~i~~~~~ 196 (200)
|..+++.++
T Consensus 161 f~~l~~~~~ 169 (170)
T cd04115 161 FMTLAHKLK 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998764
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.4e-32 Score=191.27 Aligned_cols=159 Identities=33% Similarity=0.511 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+.. +...+.+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 6899999999999999999999988776666665544 333333 33458899999999999888888889999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
||++++++++.+..|+..+.+.. ..++|+++|+||+|+...+++..+++..++..+++.++++||++|.|++++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999999988776643 257999999999999776677777888888888999999999999999999999
Q ss_pred HHHh
Q 028986 191 LITC 194 (200)
Q Consensus 191 i~~~ 194 (200)
|++.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9864
No 61
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.9e-32 Score=196.76 Aligned_cols=162 Identities=24% Similarity=0.545 Sum_probs=138.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 378999999999999999999999998888888877664 34444 4556899999999999999999999999999999
Q ss_pred EEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecC
Q 028986 113 VYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSA 178 (200)
Q Consensus 113 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 178 (200)
|||++++++++.+ ..|...+... .+++|+++|+||+|+... ..++.++...++++.++ +|+||||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA 157 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS 157 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence 9999999999998 5677776655 567999999999999542 23677889999999996 8999999
Q ss_pred CCCCC-HHHHHHHHHHhhcc
Q 028986 179 KTADN-INQLFEVLITCTSS 197 (200)
Q Consensus 179 ~~~~~-i~~~~~~i~~~~~~ 197 (200)
+++.+ |+++|..++.....
T Consensus 158 k~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 158 RSSERSVRDVFHVATVASLG 177 (222)
T ss_pred CcCCcCHHHHHHHHHHHHHh
Confidence 99885 99999999886544
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.1e-32 Score=190.63 Aligned_cols=158 Identities=32% Similarity=0.627 Sum_probs=135.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+.++..+.+...+.++....+ ...+.+ ++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 6899999999999999999999988777777765444 334444 55668999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (200)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 179 (200)
||++++++++.+. .|+..+... ..++|+++|+||.|+.+. +.+..+++.+++++++. ++++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999984 688887765 457999999999999543 24678888999998885 89999999
Q ss_pred CCCCHHHHHHHHHHh
Q 028986 180 TADNINQLFEVLITC 194 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~ 194 (200)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 63
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-33 Score=182.57 Aligned_cols=167 Identities=41% Similarity=0.770 Sum_probs=155.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+.-+||+++|..|+|||.|++++..+.|+|....+++.++..+++.+. +..+++++|||.|+++++.....|++.++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 35677899999999999999999999999999999999999999999885 45599999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|++||++...+|+-+..|+..+.+....++--|+|+||.|+.+.++++....++|.+.....++++||++..|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999888888889999999999999999999999999989999999999999999999
Q ss_pred HHHHHhhc
Q 028986 189 EVLITCTS 196 (200)
Q Consensus 189 ~~i~~~~~ 196 (200)
..+...+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876654
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.1e-32 Score=189.88 Aligned_cols=162 Identities=35% Similarity=0.565 Sum_probs=138.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+++|.+..+...+.++....+ ...... ++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999888776666665443 333333 44558999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
||++++++++.+..|+..+.+.. ..+.|+++|+||+|+...+....+++..+++..+++++++||+++.|++++|++|+
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 99999999999999988876543 45789999999999977666777788888888899999999999999999999999
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00173 159 REIRK 163 (164)
T ss_pred HHHhh
Confidence 88764
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.6e-32 Score=192.17 Aligned_cols=163 Identities=31% Similarity=0.615 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+...++..+.+.+|||+|++++...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999887777777766653 34555446668999999999999999999999999999999
Q ss_pred EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC----CcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHH
Q 028986 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAEKNGM-FFIETSAKTADNINQL 187 (200)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 187 (200)
||++++.+++.+. .|+..+... ..+.|+++|+||.|+... +.+..+++.+++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999885 588877655 457899999999998653 24567788889998888 8999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|..+++.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.9e-32 Score=192.07 Aligned_cols=160 Identities=31% Similarity=0.595 Sum_probs=135.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.. ++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 7999999999999999999999888777777766653 33444 455589999999999999999999999999999999
Q ss_pred eCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHcC-CeEEEecCCC
Q 028986 115 DITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNG-MFFIETSAKT 180 (200)
Q Consensus 115 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~ 180 (200)
|++++.+++.+. .|+..+... ..+.|+++|+||+|+.... .+..++..+++...+ +++++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999885 688888765 4579999999999996543 345667777887776 6899999999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 028986 181 ADNINQLFEVLITCTSS 197 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~ 197 (200)
|.|++++|.+|++.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=6.7e-32 Score=188.17 Aligned_cols=160 Identities=34% Similarity=0.566 Sum_probs=135.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
++||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+ ++..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 36899999999999999999999888777777666544 333444 3445788999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. +.....++..+++..+++++++|+++|.|++++|++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999998988887654 45789999999999865 3455677788888889999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8765
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=8.9e-32 Score=188.09 Aligned_cols=161 Identities=32% Similarity=0.531 Sum_probs=137.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+++|++|+|||||++++.+..+...+.++.+..+ .....+ ++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 47999999999999999999999877666666665444 333334 4555789999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.+. ...+.|+++|+||+|+...+.+..++..++++..+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999888764 34578999999999997776677778888888888999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 69
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=184.45 Aligned_cols=171 Identities=44% Similarity=0.732 Sum_probs=158.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
..+...|||+++|..-+|||||+-+++.++|......+....+..+.+.+.+.. ..+.||||.|+++|..+-+-|++.+
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~r-a~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCR-ADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccce-eeeeeeeccchHhhhccCceEEeCC
Confidence 345678999999999999999999999999988888888888888888887644 8999999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
+++++|||+++++||+.++.|...++.-....+.++||+||+|+.+.+.++.+++..+++.-++.|+++||+++.||.++
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999999999877888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccC
Q 028986 188 FEVLITCTSSYC 199 (200)
Q Consensus 188 ~~~i~~~~~~~~ 199 (200)
|+.|...+.+..
T Consensus 167 Fe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 167 FESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHh
Confidence 999988876643
No 70
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.3e-31 Score=193.33 Aligned_cols=167 Identities=37% Similarity=0.662 Sum_probs=139.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+|+|++|||||||+++|.+..+. .+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVG-GKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456789999999999999999999998764 455666666655555553 44488999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHH-HHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 109 VAVVVYDITSPDSFNKAQY-WVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
++++|||++++++++.+.. |...+.... ..+.|+++|+||.|+.....+..++...++..+++.++++|++++.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999865 656555432 35688999999999977777777888888888899999999999999999
Q ss_pred HHHHHHHhhcc
Q 028986 187 LFEVLITCTSS 197 (200)
Q Consensus 187 ~~~~i~~~~~~ 197 (200)
+|++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (211)
T PLN03118 168 CFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 71
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=3e-31 Score=184.85 Aligned_cols=161 Identities=45% Similarity=0.751 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|+|||||+++|++..+.+...++.........+... +..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 589999999999999999999988876666666666655555553 4557899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
+|++++++++.+..|+..+......++|+++|+||+|+........++..+++...+++++++|++++.|+++++++|.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776668999999999999877677778888888888999999999999999999999988
Q ss_pred hh
Q 028986 194 CT 195 (200)
Q Consensus 194 ~~ 195 (200)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 65
No 72
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.7e-31 Score=186.31 Aligned_cols=164 Identities=39% Similarity=0.723 Sum_probs=140.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|.+..+...+.++.+.++....+...+ ..+.+.+||+||++.+...+..+++.+|++|++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD-KLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC-EEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 5899999999999999999999988777777777777666666644 458899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF 188 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 188 (200)
||++++.+++.+..|+..+.... ..++|+++|+||+|+........++...++...+ ++++++|+++|.|++++|
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 99999999998888888765543 2379999999999997666666777788888876 789999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.+.
T Consensus 160 ~~i~~~~~~~ 169 (172)
T cd01862 160 ETIARKALEQ 169 (172)
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 73
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=4.4e-31 Score=189.42 Aligned_cols=163 Identities=40% Similarity=0.681 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
+||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+... +..+.+.+||++|++++...+..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 489999999999999999999988764 466677776666666664 555889999999999998888889999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC----CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+... ..+..+++.+++...+++++++|++++.|++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999988775 457899999999998532 3445567778888888999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.++
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999887553
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.4e-31 Score=190.18 Aligned_cols=163 Identities=26% Similarity=0.360 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh--------hccccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------ALAPLYYR 105 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~ 105 (200)
+||+|+|.+|||||||+++|.++.+...+.++.+.......+.+ ++..+.+.+|||||...+. ......++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 58999999999999999999999887777777765554444444 4556889999999964322 12334578
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCC
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTA 181 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~ 181 (200)
.+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+....++...++. .++++++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 8999999999999999999999998887653 4679999999999997666666666666654 56899999999999
Q ss_pred CCHHHHHHHHHHhhcc
Q 028986 182 DNINQLFEVLITCTSS 197 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~~ 197 (200)
.|++++|+.+++.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999987654
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.2e-31 Score=190.91 Aligned_cols=156 Identities=28% Similarity=0.547 Sum_probs=135.5
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC
Q 028986 39 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS 118 (200)
Q Consensus 39 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 118 (200)
+|.+|||||||+++|+.+.+...+.++.+.++....+.+. +..+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 6999999999999999988877788888888777766654 455899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 119 PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 119 ~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+.+++.+..|+..+.+.. .++|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.|+.++|++|++.+.+.
T Consensus 80 ~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 80 RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred hHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999998764 5899999999999854 3344444 467788899999999999999999999999887553
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.6e-31 Score=189.43 Aligned_cols=159 Identities=27% Similarity=0.441 Sum_probs=127.3
Q ss_pred eeeEEEEcCCCCcHHHHHH-HHHcCC-----CCCCCccccce-eEEEEE-------EEecCCcEEEEEEEeCCChhhhhh
Q 028986 33 RVKLVLLGDSGVGKSCIVL-RFVRGQ-----FDPTSKVTVGA-SFLSQT-------IALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
.+||+++|+.|||||||+. ++.+.. +...+.++.+. +..... ....++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665543 34455666642 221111 112356679999999999875 2
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC-------------------CCcCC
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE-------------------KREVP 158 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~ 158 (200)
....+++++|++|+|||++++.|++.+. .|+..+.... .+.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 6999887764 5789999999999864 36778
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986 159 AQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
.+++++++++++++|++|||++|.||+++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999875
No 77
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=7.8e-31 Score=182.84 Aligned_cols=160 Identities=48% Similarity=0.832 Sum_probs=138.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+++|.+..+.....++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 58999999999999999999998887767777777776665555 34458899999999999988889999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++..+++...+++++++|+++|.|+++++++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999887764 56799999999999973 34566788888988999999999999999999999998
Q ss_pred Hhh
Q 028986 193 TCT 195 (200)
Q Consensus 193 ~~~ 195 (200)
+.+
T Consensus 159 ~~~ 161 (161)
T cd01863 159 EKI 161 (161)
T ss_pred HhC
Confidence 753
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.7e-31 Score=186.78 Aligned_cols=159 Identities=32% Similarity=0.616 Sum_probs=134.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEe
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYD 115 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 115 (200)
|+|+|++|||||||+++|.++.+...+.++....+. ..+.. ++..+.+.+|||+|++.+...+..+++.+|++|+|||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 589999999999999999999887777666655543 34444 4555889999999999999999999999999999999
Q ss_pred CCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986 116 ITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAKTA 181 (200)
Q Consensus 116 ~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 181 (200)
++++++++.+. .|+..+... .+++|+++|+||+|+... ..+..+++.++++..+. .+++||++++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 99999999885 699888776 458999999999998653 23667788889999886 8999999999
Q ss_pred CCHHHHHHHHHHhhcc
Q 028986 182 DNINQLFEVLITCTSS 197 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~~ 197 (200)
.|++++|+.|++.+..
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999987643
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1e-30 Score=183.61 Aligned_cols=161 Identities=34% Similarity=0.568 Sum_probs=138.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.. ++..+.+.+||+||++++..++..+++.++++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 36899999999999999999999888776666666444 344444 3455889999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~ 190 (200)
|||++++++++.+..|...+.+.. ..+.|+++++||.|+...+....++...+++.++ ++++++||+.+.|++++|++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 999999999999999998887643 4579999999999998777777778788888887 78999999999999999999
Q ss_pred HHHhh
Q 028986 191 LITCT 195 (200)
Q Consensus 191 i~~~~ 195 (200)
++.++
T Consensus 159 i~~~~ 163 (168)
T cd04177 159 LVRQI 163 (168)
T ss_pred HHHHH
Confidence 99765
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=7.8e-31 Score=182.10 Aligned_cols=154 Identities=19% Similarity=0.318 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|+.|||||||++++..+.+.+.+.++ ...+ ...+.+ ++..+.+.+||++|++. ..+++.+|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 48999999999999999999988876655443 3333 345555 45568899999999964 3456789999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLH--EKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~ 189 (200)
||++++.+|+.+..|+..+.... ..++|+++|+||.|+. ..+++..+++.++++.. ++.|++|||+++.||+++|.
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999988764 3678999999999985 35677888888888776 58999999999999999999
Q ss_pred HHHHhh
Q 028986 190 VLITCT 195 (200)
Q Consensus 190 ~i~~~~ 195 (200)
.+.+.+
T Consensus 153 ~~~~~~ 158 (158)
T cd04103 153 EAAQKI 158 (158)
T ss_pred HHHhhC
Confidence 998653
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=9.5e-31 Score=193.33 Aligned_cols=160 Identities=26% Similarity=0.450 Sum_probs=134.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+|+|++|||||||+++|+++.+...+.++.+ ++....+.+ ++..+.+.+|||+|++.+...+..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 4899999999999999999999988777777665 333444455 45558999999999998888888888999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHc---------CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCC
Q 028986 114 YDITSPDSFNKAQYWVKELQKH---------GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN 183 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~ 183 (200)
||++++++|+.+..|+..+... ...++|+++|+||+|+...+++..+++.+++.. .++.++++||+++.|
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 9999999999999999888653 235789999999999977667777887777754 467899999999999
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
++++|++|.+.+
T Consensus 159 I~elf~~L~~~~ 170 (247)
T cd04143 159 LDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 82
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=1.3e-30 Score=180.74 Aligned_cols=159 Identities=49% Similarity=0.891 Sum_probs=141.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|+++||||||+++|.+..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 589999999999999999999998888777777877777766664 4448899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
+|++++++++.+..|+..+........|+++++||+|+........++..+++...+++++++|++++.|+++++++|.+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 99999999999999999998876678999999999999756667788888999888999999999999999999999863
No 83
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.1e-33 Score=184.41 Aligned_cols=171 Identities=32% Similarity=0.600 Sum_probs=155.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec--------CCcEEEEEEEeCCChhhhhhcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ--------DSTTVKFEIWDTAGQERYAALA 100 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~D~~g~~~~~~~~ 100 (200)
..++-+|.+.+|++|+|||||+.++..+.|......+.++++..+.+.+. .+..+.+++|||+|+++++.+.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 34677899999999999999999999999999999999999998888764 2234789999999999999999
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
..+++.+=+++++||+++..||-++..|+..++.+. ..+.-+++++||+|+.+.+.++.+++.+++.++++|||++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 999999999999999999999999999999998875 4456699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccC
Q 028986 180 TADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~~~ 199 (200)
+|.|+++..+.|+..+.+++
T Consensus 165 tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHH
Confidence 99999999999998887753
No 84
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=2.8e-30 Score=181.39 Aligned_cols=164 Identities=40% Similarity=0.777 Sum_probs=141.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+++|++|+|||||+++|....+.+...++.+.++....+.+. +..+.+.+||++|++.+...+..++..+|++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999888777666777666666666653 4447899999999999988888999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|||++++.+++.+..|+..+......++|+++|+||+|+...+++..+....+.+....+++++|+++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999888776668999999999999777777777777777777889999999999999999999
Q ss_pred HHHhh
Q 028986 191 LITCT 195 (200)
Q Consensus 191 i~~~~ 195 (200)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98764
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=4.9e-31 Score=184.64 Aligned_cols=160 Identities=33% Similarity=0.468 Sum_probs=132.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccCccEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v 113 (200)
||+|+|++|+|||||+++++...+...+.++....+ ...+.+ ++..+.+.+||+||++. ....+..+++.+|++++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 589999999999999999998877666666554444 333444 45558899999999874 234556778899999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEV 190 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~ 190 (200)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++.++++..+++++++|++++. |++++|+.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 99999999999999998887754 4579999999999997777777888889999899999999999994 99999999
Q ss_pred HHHhhc
Q 028986 191 LITCTS 196 (200)
Q Consensus 191 i~~~~~ 196 (200)
|++.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998765
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=2.6e-30 Score=182.34 Aligned_cols=157 Identities=32% Similarity=0.594 Sum_probs=132.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|+|||||++++.++.+...+.++....+ ...+.+ ++..+++.+||+||++++...+..+++++|++++|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 5899999999999999999999888777776653333 344555 34568999999999999999999999999999999
Q ss_pred EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSAK 179 (200)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 179 (200)
||++++++++.+ ..|+..+... ..+.|+++|+||.|+.. .+.+..+++..+++..+. .++++||+
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 999999999988 4688888754 45789999999999853 345677888899998887 89999999
Q ss_pred CCCCHHHHHHHHHH
Q 028986 180 TADNINQLFEVLIT 193 (200)
Q Consensus 180 ~~~~i~~~~~~i~~ 193 (200)
++.|++++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998864
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.1e-30 Score=183.50 Aligned_cols=163 Identities=24% Similarity=0.285 Sum_probs=136.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.+.+||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+ ++..+.+.+||++|++.+...+..+++.+|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 45789999999999999999999999887 777888877776666655 3555789999999999888888999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLF 188 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~ 188 (200)
+++|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.+.......+..++++.+++ .++++||+++.|++++|
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 9999999999999998888876643 23789999999999965544444455677777777 47999999999999999
Q ss_pred HHHHHhhc
Q 028986 189 EVLITCTS 196 (200)
Q Consensus 189 ~~i~~~~~ 196 (200)
+.|.+.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99998765
No 88
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=4e-30 Score=181.50 Aligned_cols=159 Identities=29% Similarity=0.575 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|+|||||+++|..+.+...+.++....+ ...+.+ ++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 5899999999999999999999988776666655443 334444 34457899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (200)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 179 (200)
||++++.+++.+. .|+..+... ..+.|+++|+||+|+... ..+..+++..+++..++ ++++|||+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 9999999998884 688888765 678999999999998543 25667788888888886 79999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 028986 180 TADNINQLFEVLITCT 195 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~ 195 (200)
++.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=2.7e-30 Score=188.61 Aligned_cols=160 Identities=29% Similarity=0.425 Sum_probs=132.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc-CccEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR-GAAVAV 111 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i 111 (200)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+. +....+.+||++|++.+ ....++. .+|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEMW--TEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcchH--HHhHHhhcCCCEEE
Confidence 58999999999999999999887775 5555555545555556553 45588999999999732 2334555 899999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999887653 357999999999999877777788888888888999999999999999999999
Q ss_pred HHHhhc
Q 028986 191 LITCTS 196 (200)
Q Consensus 191 i~~~~~ 196 (200)
|++.+.
T Consensus 158 l~~~~~ 163 (221)
T cd04148 158 IVRQIR 163 (221)
T ss_pred HHHHHH
Confidence 998885
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.4e-29 Score=176.91 Aligned_cols=162 Identities=33% Similarity=0.541 Sum_probs=137.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|+...+...+.++....+ ...... ++..+.+.+||+||++++...+..+++.+|+++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999887766666555443 233333 55558899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
+|++++.+++.+..|+..+.... ..++|+++|+||+|+.........+...++..++++++++|++++.|++++|++|.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999988888877653 45799999999999976555667777888888899999999999999999999999
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 88754
No 91
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.4e-29 Score=176.06 Aligned_cols=159 Identities=38% Similarity=0.612 Sum_probs=135.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+|+|++|||||||+++|++..+.....++.. +........ ++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999998877666666555 333344444 344588999999999998888899999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
|++++++++.+..|+..+..... ...|+++|+||+|+...+....+++..++..++++++++|++++.|++++|++|++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 99999999999888888877644 68999999999999876777788888999888899999999999999999999987
Q ss_pred hh
Q 028986 194 CT 195 (200)
Q Consensus 194 ~~ 195 (200)
.+
T Consensus 159 ~i 160 (160)
T cd00876 159 EI 160 (160)
T ss_pred hC
Confidence 53
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.1e-29 Score=177.06 Aligned_cols=159 Identities=35% Similarity=0.668 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
.||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 58999999999999999999999887777777665543 34444 34558899999999999988888899999999999
Q ss_pred EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (200)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 179 (200)
||++++++++.+ ..|+..+... ..+.|+++|+||+|+... ..+...+.++++...+. .+++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999888 4688877654 457899999999998543 23445677778877765 79999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 028986 180 TADNINQLFEVLITCT 195 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~ 195 (200)
+|.|++++|++|++.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 93
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.3e-29 Score=180.21 Aligned_cols=164 Identities=20% Similarity=0.282 Sum_probs=129.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.++|+++|++|||||||++++....+... .++.+.......+...++..+.+.+||++|++.+...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998876543 4555555545455444445589999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------cCCeEEEecCCCCCCH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------NGMFFIETSAKTADNI 184 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i 184 (200)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+... ...++..++... .+++++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999998888888776543 2457899999999998542 334444444321 1346899999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
++++++|.+.+.+.
T Consensus 159 ~~l~~~l~~~l~~~ 172 (183)
T cd04152 159 QEGLEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888654
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.3e-29 Score=178.45 Aligned_cols=160 Identities=19% Similarity=0.322 Sum_probs=123.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
++.+||+++|.++||||||+++|..+.+. .+.++.+.... .+.. ..+.+++||+||++.+...|..+++++|++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 45689999999999999999999987765 34566665442 2322 237899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i 184 (200)
|+|||++++++++.+..++..+... ...++|+++|+||.|+.... ..++..+..... .+.++++||++|+|+
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence 9999999999998887777665432 23578999999999986543 333433332211 124668999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
.++|+||.+.+.+.
T Consensus 167 ~e~~~~l~~~~~~~ 180 (181)
T PLN00223 167 YEGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988764
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.3e-29 Score=177.75 Aligned_cols=155 Identities=23% Similarity=0.381 Sum_probs=121.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+++|+++||||||+++|....+.. +.++.+.+.. .+.. ..+.+++||++|++.+...+..+++.+|++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i 80 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 80 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 346899999999999999999998876643 4455555443 2222 237899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i 184 (200)
++|||++++.+++.+..|+..+... ...++|+++|+||+|+... ...+++.+++.. ..+.++++||++|.|+
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 158 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCCh
Confidence 9999999999998887777665432 2457899999999998643 345555555421 2346899999999999
Q ss_pred HHHHHHHHH
Q 028986 185 NQLFEVLIT 193 (200)
Q Consensus 185 ~~~~~~i~~ 193 (200)
+++|+||.+
T Consensus 159 ~~~~~~l~~ 167 (168)
T cd04149 159 YEGLTWLSS 167 (168)
T ss_pred HHHHHHHhc
Confidence 999999865
No 96
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.1e-31 Score=172.78 Aligned_cols=160 Identities=39% Similarity=0.677 Sum_probs=145.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028986 38 LLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI 116 (200)
Q Consensus 38 i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 116 (200)
++|++++|||.|+-++..+.|. .+..++.+.++..+.+.. ++..+++++|||.|++++++....|++.+|+++++||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999888877664 456678888887777766 44559999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 117 TSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 117 ~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.+..||++++.|+..+.+.....+.+.+++||+|+..++.+..++.+++++.+++|++++|+++|.|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988888899999999999998999999999999999999999999999999999999998877
Q ss_pred cc
Q 028986 197 SY 198 (200)
Q Consensus 197 ~~ 198 (200)
++
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 64
No 97
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-29 Score=163.45 Aligned_cols=165 Identities=39% Similarity=0.712 Sum_probs=151.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
..+.+|.+|+|+-|+|||.|++.+...+|....+.+++..+..+.+.+ .+..+++++|||.|+++++.....|++.+-+
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 356789999999999999999999999998888889999988877777 4555999999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
.+.|||+..+.+++.+..|+...+....++..+++++||.|+...+.+..+++++|+++.+..++++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999886
Q ss_pred HHHHhh
Q 028986 190 VLITCT 195 (200)
Q Consensus 190 ~i~~~~ 195 (200)
.-.+++
T Consensus 167 e~akki 172 (215)
T KOG0097|consen 167 ETAKKI 172 (215)
T ss_pred HHHHHH
Confidence 655554
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=9.9e-30 Score=179.61 Aligned_cols=158 Identities=21% Similarity=0.346 Sum_probs=122.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+..+||+++|++|||||||+++|..+.+. .+.++.+..... ... ..+.+.+||++|++.+...+..+++++|++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~---~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY---KNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE---CCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 44689999999999999999999877664 345566655432 222 237899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 184 (200)
|+|+|++++.+++....|+..+... ...++|+++|+||.|+.+.. ..+++..... ...+.++++||++|.|+
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCH
Confidence 9999999999999888777776543 24578999999999986432 2333333221 12335778999999999
Q ss_pred HHHHHHHHHhhc
Q 028986 185 NQLFEVLITCTS 196 (200)
Q Consensus 185 ~~~~~~i~~~~~ 196 (200)
+++|+||.+.+.
T Consensus 163 ~e~~~~l~~~~~ 174 (175)
T smart00177 163 YEGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=5.4e-29 Score=174.97 Aligned_cols=156 Identities=21% Similarity=0.349 Sum_probs=124.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+++|+++||||||+++|.+..+.. +.++.+..+. .+.. ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 74 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence 68999999999999999999986643 4555554443 2222 2378999999999988889999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC------CeEEEecCCCCCCHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG------MFFIETSAKTADNINQL 187 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~ 187 (200)
|++++.+++.+..|+..+.+. ...+.|+++|+||.|+.. ....+++.+++...+ +.++++||++|.|++++
T Consensus 75 D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 75 DSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred eCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 999999999998888887653 234689999999999854 345666666654222 36889999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|+||.+.+.+.
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.4e-28 Score=177.04 Aligned_cols=160 Identities=29% Similarity=0.527 Sum_probs=129.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+++|++|||||||+++|+...+...+.++... .....+.+ .+..+.+.+||++|+..+...+..++..+|++++||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999998887766655543 33344444 344578999999999988888888999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCC-CCcCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHE-KREVPAQDGIEYAE-KNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|++++.+++.+..|+..+.... ..++|+++|+||+|+.. ...+..+...+... ..+++++++|+++|.|++++|++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 9999999999999988877654 35799999999999865 34444444444443 456789999999999999999999
Q ss_pred HHhhc
Q 028986 192 ITCTS 196 (200)
Q Consensus 192 ~~~~~ 196 (200)
++.+.
T Consensus 159 ~~~~~ 163 (198)
T cd04147 159 LRQAN 163 (198)
T ss_pred HHHhh
Confidence 98765
No 101
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2.1e-28 Score=174.59 Aligned_cols=161 Identities=33% Similarity=0.608 Sum_probs=131.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
.||+|+|++|+|||||+++|..+.+.+.+.++....+. ..+.. ++..+.+.+||++|++.+......++..+|+++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 58999999999999999999987776666665554443 33444 34457899999999988877777778899999999
Q ss_pred EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC----------CCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE----------KREVPAQDGIEYAEKNGM-FFIETSAKTA 181 (200)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 181 (200)
||+++.++++.+. .|+..+... ..+.|+++|+||+|+.. .+.+..++...+++..++ .+++|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999885 699988765 34699999999999854 234556777888888885 7999999999
Q ss_pred CCHHHHHHHHHHhhcc
Q 028986 182 DNINQLFEVLITCTSS 197 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~~ 197 (200)
.|++++|+++.+.+..
T Consensus 159 ~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 159 EGVDDVFEAATRAALL 174 (187)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999977654
No 102
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=177.39 Aligned_cols=164 Identities=34% Similarity=0.548 Sum_probs=148.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..+||+++|.+|+|||+|..++....|...+.++.+..+ .+.+.+. +..+.+.++||+|++++......++..+|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~-~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVD-GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEEC-CEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 357999999999999999999999999999998888544 5556665 66689999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+||+++++.||+.+..++..+.+.. ...+|+++|+||+|+...+++..++...++..++++++|+||+.+.+++++|..
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 9999999999999999999985543 456899999999999998999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|++.+..
T Consensus 160 L~r~~~~ 166 (196)
T KOG0395|consen 160 LVREIRL 166 (196)
T ss_pred HHHHHHh
Confidence 9987764
No 103
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.9e-28 Score=173.87 Aligned_cols=162 Identities=35% Similarity=0.574 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
.||+++|++|+|||||+++|.+..+...+.++....+ ...... ++..+.+.+||+||++++...+..++..+|+++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 5899999999999999999999877665555554443 233334 33447899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
||.++..+++.+..|+..+.+. ...+.|+++|+||+|+...+....++...++..++++++++|++++.|+.++|.+|.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998888877654 345789999999999976666666677778888889999999999999999999999
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+..
T Consensus 160 ~~~~~ 164 (180)
T cd04137 160 EEIEK 164 (180)
T ss_pred HHHHH
Confidence 88764
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.7e-29 Score=175.73 Aligned_cols=152 Identities=19% Similarity=0.364 Sum_probs=116.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|.++||||||++++..+.+.. +.++.+.... .+.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v 74 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 589999999999999999998877653 5556655442 2222 237899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 187 (200)
+|++++.+++.+..|+..+... .....|+++++||.|+.... ..+++.+... ...+.++++||++|.|++++
T Consensus 75 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 75 VDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred EeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 9999999999888777766432 23468999999999985432 2223222221 12345789999999999999
Q ss_pred HHHHHH
Q 028986 188 FEVLIT 193 (200)
Q Consensus 188 ~~~i~~ 193 (200)
|++|.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999864
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.1e-29 Score=177.47 Aligned_cols=153 Identities=20% Similarity=0.297 Sum_probs=123.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
.|+++|++|||||||+++|.+..+...+.++.+... .. +. ...+++.+||++|++.+...+..+++++|++++||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IP-TQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--Ee-eCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 389999999999999999999877766667766543 22 22 23378999999999999999999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH----HHHHHHHHHcCCeEEEecCCC------CCCH
Q 028986 115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA----QDGIEYAEKNGMFFIETSAKT------ADNI 184 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~i 184 (200)
|.+++.++...+.|+..+.... .++|+++|+||.|+...+.... ..+..++++.++.++++||++ ++|+
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 9999999999888888876543 6899999999999866543221 123455566678899998888 9999
Q ss_pred HHHHHHHHH
Q 028986 185 NQLFEVLIT 193 (200)
Q Consensus 185 ~~~~~~i~~ 193 (200)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998864
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.1e-28 Score=174.05 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=122.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
++...++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+. .+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~---~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE---GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3456689999999999999999999987543 344454432 2333343 278999999999988888899999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~ 182 (200)
++++|+|++++.+++....|+..+... ...++|+++|+||+|+.+.. ..+++.+++. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999998888787776442 34679999999999986543 3455555543 245689999999999
Q ss_pred CHHHHHHHHHH
Q 028986 183 NINQLFEVLIT 193 (200)
Q Consensus 183 ~i~~~~~~i~~ 193 (200)
|++++|++|++
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=4.4e-28 Score=176.64 Aligned_cols=166 Identities=29% Similarity=0.533 Sum_probs=140.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
.+....+||+++|++|||||||++++..+.+.+.+.++.+.++....+... +..+.+.+||++|++.+...+..++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-CGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 445667899999999999999999988888888888888888776666553 4458999999999999888888899999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
+++++|||++++.++..+..|+..+... ..++|+++++||+|+... .... +...++...++.++++|++++.|++++
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999999988766 357899999999998543 2333 334677778889999999999999999
Q ss_pred HHHHHHhhcc
Q 028986 188 FEVLITCTSS 197 (200)
Q Consensus 188 ~~~i~~~~~~ 197 (200)
|.+|++.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-28 Score=174.33 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=122.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
++.+||+++|+++||||||++++..+.+.. +.++.+..+. .+.. ..+.+++||++|++.+...+..+++.+|++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 88 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHYYQNTNGL 88 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 446899999999999999999998877654 4556655443 2332 237899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 184 (200)
|+|+|++++.+++....++..+... ...++|+++|+||.|+.+.. ..+++..... ...+.++++||++|.|+
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 9999999999998887777665432 23468999999999985432 2333322221 12235779999999999
Q ss_pred HHHHHHHHHhhcccC
Q 028986 185 NQLFEVLITCTSSYC 199 (200)
Q Consensus 185 ~~~~~~i~~~~~~~~ 199 (200)
+++|++|.+.+.+-+
T Consensus 167 ~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 167 YEGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876543
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=4.2e-28 Score=170.55 Aligned_cols=157 Identities=33% Similarity=0.684 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|++..+...+.++....+ ...... .+..+.+++||+||++++......+++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 5899999999999999999999887555555554333 333333 45558899999999998888888888999999999
Q ss_pred EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-----------cCCHHHHHHHHHHcCC-eEEEecCCC
Q 028986 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKR-----------EVPAQDGIEYAEKNGM-FFIETSAKT 180 (200)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~ 180 (200)
||++++.++... ..|+..+... ..+.|+++|+||+|+.... .+..++..+++..+++ +++++|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 999999988766 5577777665 3489999999999986554 2356677788888887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028986 181 ADNINQLFEVLIT 193 (200)
Q Consensus 181 ~~~i~~~~~~i~~ 193 (200)
+.|+.+++++|++
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999876
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.8e-28 Score=169.26 Aligned_cols=159 Identities=25% Similarity=0.378 Sum_probs=121.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|||||||+++|.++.+...+..+ ...+ .....+ ++..+++.+||+||.+.+...+..++..+|++++|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-Eeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 48999999999999999999998876553332 2222 222233 34458999999999988777777778999999999
Q ss_pred EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Q 028986 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNG--MFFIETSAKTADNINQLF 188 (200)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~ 188 (200)
||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.... ..++...++..+. .+++++||+++.|++++|
T Consensus 78 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 78 YSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence 999999999987 46888887664 48999999999999665432 1233333333332 379999999999999999
Q ss_pred HHHHHhhc
Q 028986 189 EVLITCTS 196 (200)
Q Consensus 189 ~~i~~~~~ 196 (200)
+.+.+.+.
T Consensus 157 ~~~~~~~~ 164 (166)
T cd01893 157 YYAQKAVL 164 (166)
T ss_pred HHHHHHhc
Confidence 99988764
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4.8e-28 Score=173.62 Aligned_cols=149 Identities=25% Similarity=0.350 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec----CCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ----DSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
+||+++|+++||||||+++|.++.+...+.++.+.++..+.+.+. ++..+.+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877766666654 2456899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcC-------------------CCCCeEEEEEeCCCCCCCCcCCHHH----HHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHG-------------------SPDIVMALVGNKADLHEKREVPAQD----GIEYA 166 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~~----~~~~~ 166 (200)
+|+|||++++.|++.+..|+..+.... ...+|+++|+||.|+.+.+.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986531 3468999999999997665444432 34567
Q ss_pred HHcCCeEEEecCCCCC
Q 028986 167 EKNGMFFIETSAKTAD 182 (200)
Q Consensus 167 ~~~~~~~~~~S~~~~~ 182 (200)
.+.+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 7889999998888664
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=5.4e-28 Score=168.59 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=116.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+|+++|+++||||||+++|.+..+ ...+.++.+.... .+.. ..+++.+||+||++++...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK---GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE---CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 589999999999999999998753 4445556554332 2222 237899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNIN 185 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~ 185 (200)
+|++++.++.....|+..+... ...++|+++|+||+|+.... ..++...... ...+.++++||++|.|++
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999998888888776543 23579999999999986532 2223222221 123458999999999999
Q ss_pred HHHHHHHHh
Q 028986 186 QLFEVLITC 194 (200)
Q Consensus 186 ~~~~~i~~~ 194 (200)
++|++|.++
T Consensus 154 ~~~~~l~~~ 162 (162)
T cd04157 154 EGVQWLQAQ 162 (162)
T ss_pred HHHHHHhcC
Confidence 999998753
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=171.81 Aligned_cols=164 Identities=33% Similarity=0.656 Sum_probs=146.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...+|++|||+.++|||+|+..+..+.|+..+.|+....+ ...+.+.++..+.+.+|||.|+++|..++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999998666 445566568889999999999999999998899999999
Q ss_pred EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
++||++.++.|++++ .+|+.+++.++ +++|+|+|++|.|+..+ ..+..++...++++.|+ .|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999887 89999999885 78999999999999642 35778899999999985 79999
Q ss_pred cCCCCCCHHHHHHHHHHhhc
Q 028986 177 SAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~~ 196 (200)
||++..|++++|+..+....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHh
Confidence 99999999999999887764
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2e-27 Score=167.70 Aligned_cols=153 Identities=20% Similarity=0.351 Sum_probs=118.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.++|+++|++|+|||||+++|..+.+.. ..++.+..+. ..... .+++.+||+||++.+...+..+++.+|++++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK---NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC---CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 5799999999999999999999877654 4555555443 22232 3789999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 186 (200)
|+|+++++++.....++..+... ...++|+++++||+|+... ...++..+.. ...+++++++||+++.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999998888777766665443 2356899999999998653 2333332222 22456799999999999999
Q ss_pred HHHHHHH
Q 028986 187 LFEVLIT 193 (200)
Q Consensus 187 ~~~~i~~ 193 (200)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999875
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.1e-27 Score=167.95 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=118.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
+|+++|++|||||||+++|.+. +...+.++.+... ..+... .+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~ 74 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD---KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV 74 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC---CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 4899999999999999999987 5555666666543 233332 278999999999999999999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHH------HHHHHc--CCeEEEecCCCC----
Q 028986 115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGI------EYAEKN--GMFFIETSAKTA---- 181 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~------~~~~~~--~~~~~~~S~~~~---- 181 (200)
|++++.+++.+..|+..+.... ..++|+++|+||.|+..... ..+.. .++++. .+.+++|||++|
T Consensus 75 D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 75 DSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred ECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 9999999999998988876543 35789999999999866542 22222 223222 356888999998
Q ss_pred --CCHHHHHHHHHH
Q 028986 182 --DNINQLFEVLIT 193 (200)
Q Consensus 182 --~~i~~~~~~i~~ 193 (200)
.|+++.|+||.+
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=3.1e-27 Score=169.04 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=122.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+..+|+++|++|||||||+++|.+..+. .+.++.+... ..+.+.. ..+.+||+||++.+...+..+++.+|++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~---~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN---IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 34689999999999999999999987764 3444444332 2333322 6789999999998888888999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH----------------cCCeE
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK----------------NGMFF 173 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~ 173 (200)
++|+|+++..+++....|+..+.+.. ..+.|+++++||+|+.. .+..+++++.+.. ..+.+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999988888877777765432 45699999999999864 3455666665542 22468
Q ss_pred EEecCCCCCCHHHHHHHHHHhh
Q 028986 174 IETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
++|||+++.|+.++|+||.+.+
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEeEecCCCChHHHHHHHHhhC
Confidence 9999999999999999998764
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2.9e-27 Score=164.67 Aligned_cols=152 Identities=22% Similarity=0.351 Sum_probs=116.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
+|+++|++|||||||+++|.+..+... .++.+... ..+.. ...+.+.+||++|++.+...+..++..+|++++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL--EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe--CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999876533 44444333 22332 23378999999999988888888999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH------HHcCCeEEEecCCCCCCHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA------EKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|++++.++.....|+..+.+. ...+.|+++|+||+|+.... ..+++.... ...++++++|||++|.|++++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 76 DSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred ECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999898888887776543 23579999999999985432 223332221 123457999999999999999
Q ss_pred HHHHHH
Q 028986 188 FEVLIT 193 (200)
Q Consensus 188 ~~~i~~ 193 (200)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999865
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=6e-27 Score=164.15 Aligned_cols=152 Identities=20% Similarity=0.325 Sum_probs=116.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFD------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
+|+++|++|+|||||+++|.+.... ..+.++.+.... .+.+. ...+.+||+||++.+...+..++..+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 75 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG---NARLKFWDLGGQESLRSLWDKYYAECH 75 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC---CEEEEEEECCCChhhHHHHHHHhCCCC
Confidence 5899999999999999999864321 122334433332 23332 268999999999999988999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-------cCCeEEEecCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-------NGMFFIETSAKT 180 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~ 180 (200)
++++|+|++++++++....|+..+.+.. ..++|+++|+||+|+... ...+++..+... .+++++++||++
T Consensus 76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 76 AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 9999999999988888888887765532 457999999999998553 334444444432 245799999999
Q ss_pred CCCHHHHHHHHHH
Q 028986 181 ADNINQLFEVLIT 193 (200)
Q Consensus 181 ~~~i~~~~~~i~~ 193 (200)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999875
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=3.5e-27 Score=163.91 Aligned_cols=151 Identities=23% Similarity=0.395 Sum_probs=118.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+++|++|||||||++++++... ....++.+... ..+.+. .+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 74 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK---NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV 74 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC---CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999873 33344444433 223332 268999999999999989999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~ 188 (200)
|+++++++.....|+..+... ...+.|+++|+||+|+.... ..++..+... ...++++++|+++|.|++++|
T Consensus 75 D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 75 DSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999888887776553 34689999999999986543 2333333332 235679999999999999999
Q ss_pred HHHHH
Q 028986 189 EVLIT 193 (200)
Q Consensus 189 ~~i~~ 193 (200)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.3e-27 Score=164.94 Aligned_cols=151 Identities=21% Similarity=0.350 Sum_probs=112.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
||+++|++++|||||+++|....+.. ..++.+.... .+.. ..+.+++||+||++.+...+..++..+|++++|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~ 74 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV 74 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 68999999999999999998876643 3344444332 2222 2378999999999999999999999999999999
Q ss_pred eCCCHHhHHHHHHHHHHH-HHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Q 028986 115 DITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~ 188 (200)
|++++.++.....++..+ ......++|+++|+||+|+.... ...++..... ..+.+++++|++++.|++++|
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 75 DSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 999998887665555544 33334578999999999986433 1222222211 123469999999999999999
Q ss_pred HHHHH
Q 028986 189 EVLIT 193 (200)
Q Consensus 189 ~~i~~ 193 (200)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99975
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.2e-26 Score=172.78 Aligned_cols=143 Identities=27% Similarity=0.476 Sum_probs=121.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecC------------CcEEEEEEEeCCChhhh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD------------STTVKFEIWDTAGQERY 96 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~g~~~~ 96 (200)
+....+||+|+|+.|||||||+++|.++.+...+.++.+.++....+.+.+ +..+.++|||++|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 456678999999999999999999999988888888888887666666532 34588999999999999
Q ss_pred hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC------------CCCeEEEEEeCCCCCCCC---c---CC
Q 028986 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS------------PDIVMALVGNKADLHEKR---E---VP 158 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~ 158 (200)
..++..+++++|++|+|||++++.+++.+..|++.+..... .++|++||+||+|+...+ . ..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987531 358999999999996542 2 35
Q ss_pred HHHHHHHHHHcCC
Q 028986 159 AQDGIEYAEKNGM 171 (200)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (200)
.++++++|+++++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7889999998875
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=2.4e-26 Score=162.09 Aligned_cols=157 Identities=27% Similarity=0.440 Sum_probs=123.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+++|+.|||||||+++|....... ..||.+... ..+.+.+ +.+.+||.+|+..++..|..+++++|++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~---~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG---YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT---EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc---EEEEEEeccccccccccceeecccccee
Confidence 678899999999999999999999865432 444544443 3344433 6899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------cCCeEEEecCCCCCC
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------NGMFFIETSAKTADN 183 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~ 183 (200)
|||+|.++.+.+......+..+... ...++|+++++||.|+... ...+++...... ..+.++.||+.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999998888887666665443 3458999999999998653 345555544432 345689999999999
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
+.+.++||.+++
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=3.3e-26 Score=152.32 Aligned_cols=164 Identities=23% Similarity=0.307 Sum_probs=128.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.++.+++|+|+|..||||||++++|.+.... ...|+.+ +..++..+.. +++++||..|+...+..|..|+..+|
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~g--f~Iktl~~~~---~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLG--FQIKTLEYKG---YTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccc--eeeEEEEecc---eEEEEEEcCCcchhHHHHHHhhhccC
Confidence 4566999999999999999999999997632 2333333 4444444433 78999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCCC---cCC-HHHHHHHHHHcCCeEEEecCCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEKR---EVP-AQDGIEYAEKNGMFFIETSAKTADN 183 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~S~~~~~~ 183 (200)
++|||+|.+++..++.....+.. +....-.+.|+++++||.|+...- ++. .-...++++...++++.||+.+|++
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 99999999999888877665555 344445578999999999997431 111 1223345566788999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028986 184 INQLFEVLITCTSSY 198 (200)
Q Consensus 184 i~~~~~~i~~~~~~~ 198 (200)
+.+-++||++.+.++
T Consensus 166 l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=4.1e-26 Score=162.38 Aligned_cols=157 Identities=16% Similarity=0.196 Sum_probs=119.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+++|++|||||||+++|.+..+.. +.++.+... ..+... .+++.+||+||+..+...+..++.++|++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG---NIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 445899999999999999999999876543 233333322 222222 26899999999998889999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCeEEEec
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------------NGMFFIETS 177 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 177 (200)
++|+|++++.++.....++..+.+. ...+.|+++|+||.|+.. ....+++.+.... ....+++||
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 9999999999898887777766543 235789999999999854 3445555544321 133589999
Q ss_pred CCCCCCHHHHHHHHHHhh
Q 028986 178 AKTADNINQLFEVLITCT 195 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~ 195 (200)
++++.|++++++||.+++
T Consensus 167 a~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 167 VVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred cccCCChHHHHHHHHhhC
Confidence 999999999999998753
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-28 Score=165.54 Aligned_cols=173 Identities=31% Similarity=0.478 Sum_probs=157.9
Q ss_pred cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028986 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL 102 (200)
Q Consensus 23 ~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 102 (200)
.++.....+..+|++|+|..++||||+|++++.+-|...+..+++.++..+.+.+.... +++.+||++|++++......
T Consensus 10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Ed-vr~mlWdtagqeEfDaItkA 88 (246)
T KOG4252|consen 10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIED-VRSMLWDTAGQEEFDAITKA 88 (246)
T ss_pred CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHH-HHHHHHHhccchhHHHHHHH
Confidence 34455567889999999999999999999999999999999999999988877775544 77899999999999999999
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
|++.+.+.++||+.+++.||+....|++.+... ...+|.++|-||+|+.+...+...+++.+++.+++.++.+|++...
T Consensus 89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~ 167 (246)
T KOG4252|consen 89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF 167 (246)
T ss_pred HhccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 999999999999999999999999999999876 5589999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
|+.++|.+|++++.+
T Consensus 168 NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988764
No 126
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.1e-25 Score=158.59 Aligned_cols=141 Identities=40% Similarity=0.710 Sum_probs=124.2
Q ss_pred CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC
Q 028986 57 QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG 136 (200)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 136 (200)
.|.+.+.++.+.++....+.+. +..+++.+|||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~-~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 4566778888888877777664 455899999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 137 SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 137 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
...+|+++|+||+|+...+.+..+++..++..+++.++++||++|.|++++|++|.+.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999977667788888889888899999999999999999999999988653
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=7.3e-26 Score=156.89 Aligned_cols=151 Identities=26% Similarity=0.400 Sum_probs=118.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEe
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYD 115 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 115 (200)
|+++|++|||||||+++|.+..+...+.++.+..... +.. +. +.+.+||+||++.+...+..++..+|++++|+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GN-VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CC-EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 8999999999999999999998887777777665532 222 22 789999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHH
Q 028986 116 ITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 116 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+++..++.....|+..+... ...++|+++|+||.|+..... ..+..... ....++++++|++++.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99998888877777665442 235789999999999865432 22222221 12345789999999999999999
Q ss_pred HHHH
Q 028986 190 VLIT 193 (200)
Q Consensus 190 ~i~~ 193 (200)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2.8e-25 Score=170.20 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRG 106 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 106 (200)
..|+|+|.|+||||||+++|.+........+..+.......+.+.++ .++.+||+||.-+ ....+...++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 36889999999999999999986432211122222222222333222 4689999999532 11222334567
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
++++++|+|+++.++++.+..|...+..... .+.|+++|+||+|+........++...++...+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999987788888999988876543 46899999999998765444344445555566788999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
++++++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988653
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.9e-25 Score=156.65 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=106.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh---------ccccccc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA---------LAPLYYR 105 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~ 105 (200)
+|+++|++|+|||||+++|.+..+.....+............. ..+.+++|||||...... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 7999999999999999999997654221111111111112211 236899999999732110 0001112
Q ss_pred CccEEEEEEeCCCHHh--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986 106 GAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 183 (200)
.+|++++|+|+++..+ ++....|+..+... ..+.|+++|+||+|+....... +..++....+.+++++||+++.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 3689999999998754 35556777777654 2478999999999986544322 24455555677899999999999
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
+++++++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1e-24 Score=153.74 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=114.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|||||||++++.+..+.. ..++.+... ..+... ...+.+||++|+..+...+..+++.+|++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSD---GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEEC---CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 447899999999999999999999976532 334444332 223332 26799999999988888888889999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i 184 (200)
++|+|+++..++.....++..+... ...++|+++++||+|+..... .+++.+..... ..+++++||++|.|+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence 9999999988888776666655432 245799999999999865322 22222221111 124789999999999
Q ss_pred HHHHHHHHHh
Q 028986 185 NQLFEVLITC 194 (200)
Q Consensus 185 ~~~~~~i~~~ 194 (200)
+++|+||+++
T Consensus 164 ~~~~~~l~~~ 173 (173)
T cd04155 164 QEGMNWVCKN 173 (173)
T ss_pred HHHHHHHhcC
Confidence 9999999763
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=3.2e-25 Score=160.37 Aligned_cols=158 Identities=23% Similarity=0.239 Sum_probs=112.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhcc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALA 100 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~ 100 (200)
.+..++|+|+|++|||||||++++++........+..+.......+.+.+. ..+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG--REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC--ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 345679999999999999999999997643222222222222233333332 3789999999621 22222
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
..+..+|++++|+|++++.++.....|...+......++|+++|+||+|+...... .......+.+++++|+++
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKT 189 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCC
Confidence 23567999999999999888877777777777665567899999999998654321 133445567899999999
Q ss_pred CCCHHHHHHHHHHhh
Q 028986 181 ADNINQLFEVLITCT 195 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~ 195 (200)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998754
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.9e-25 Score=155.96 Aligned_cols=158 Identities=18% Similarity=0.144 Sum_probs=109.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 107 (200)
+|+++|.+|||||||+++|.+........+..........+.+.+ ...+.+|||||..+ .......+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD--GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC--CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 689999999999999999997643211111111111111122222 14799999999632 11122222 3469
Q ss_pred cEEEEEEeCCCH-HhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCC
Q 028986 108 AVAVVVYDITSP-DSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN 183 (200)
Q Consensus 108 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~ 183 (200)
|++++|+|++++ .+++.+..|.+.+..... ...|+++|+||+|+...... .+....+... .+.+++++|++++.|
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 999999999998 788888888888876532 46899999999998665443 3344455555 377899999999999
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
++++|++|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=6.6e-25 Score=155.50 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=111.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC-------CCCCCcc------ccceeEEEEEE--Eec--CCcEEEEEEEeCCChhhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ-------FDPTSKV------TVGASFLSQTI--ALQ--DSTTVKFEIWDTAGQERYA 97 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~~--~~~~~~~~l~D~~g~~~~~ 97 (200)
+|+++|++++|||||+++|++.. +...+.. +.+.++....+ .+. ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 1111111 11222222221 121 3445889999999999999
Q ss_pred hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---eEE
Q 028986 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---FFI 174 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 174 (200)
..+..+++.+|++|+|+|+++..+......|.... ..++|+++|+||+|+.... ..+...++++.+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88889999999999999999876665555554322 2367899999999985422 12333455555665 389
Q ss_pred EecCCCCCCHHHHHHHHHHhhc
Q 028986 175 ETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
++||++|.|++++|++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCC
Confidence 9999999999999999998764
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=2.2e-24 Score=150.48 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+.|+++|+++||||||+++|.+.. +.....+............+.. ...+.+|||||++++......++..+|++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS--GKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC--CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 368999999999999999999742 2222222222233233333332 25799999999998877767778899999
Q ss_pred EEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHH---cCCeEEEecCCCCC
Q 028986 111 VVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEK---NGMFFIETSAKTAD 182 (200)
Q Consensus 111 i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~ 182 (200)
++|+|+++ ..+.+.+ ..+... ...|+++|+||+|+..... ...++..+.+.. .+.+++++|++++.
T Consensus 79 i~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 79 LLVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 99999987 3333322 222222 1248999999999865321 112333444443 36789999999999
Q ss_pred CHHHHHHHHHH
Q 028986 183 NINQLFEVLIT 193 (200)
Q Consensus 183 ~i~~~~~~i~~ 193 (200)
|++++++.|.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998764
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=4.5e-24 Score=147.59 Aligned_cols=158 Identities=32% Similarity=0.518 Sum_probs=121.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+++|++|+|||||++++....+...+.++.+.++....+.. ++..+.+.+||+||+..+...+..+.++++.+++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 368999999999999999999998866666666666665555555 3444789999999998888888888889999999
Q ss_pred EEeCCCH-HhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 113 VYDITSP-DSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 113 v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|.... .++.... .|+..+......+.|+++++||.|+.... ........+......+++++|++++.|+.+++++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 9998876 5665543 66666665544488999999999996543 2333333333444667999999999999999998
Q ss_pred HH
Q 028986 191 LI 192 (200)
Q Consensus 191 i~ 192 (200)
|-
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 136
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=3.3e-24 Score=150.31 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=108.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
.|+|+|++|+|||||+++|....+..........+.....+....+....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999987655433333333333333332123368999999999988888888889999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-HHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Q 028986 115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAE------KNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~S~~~~~~i~~~ 187 (200)
|+++....+. ...+..+.. .++|+++|+||+|+....... .+....+.. ...++++++|++++.|+.++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9997532211 112222332 467899999999986432111 111111111 12357999999999999999
Q ss_pred HHHHHHhhcc
Q 028986 188 FEVLITCTSS 197 (200)
Q Consensus 188 ~~~i~~~~~~ 197 (200)
+++|.+...+
T Consensus 158 ~~~l~~~~~~ 167 (168)
T cd01887 158 LEAILLLAEK 167 (168)
T ss_pred HHHHHHhhhc
Confidence 9999987654
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=152.69 Aligned_cols=164 Identities=38% Similarity=0.555 Sum_probs=133.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+|+|+.|||||||+++|....+...+.++.+..+.......... .+++.+|||+|++++...+..++..++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-EEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 389999999999999999999999998888888777776665555433 5889999999999999999999999999999
Q ss_pred EEeCCC-HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHc---CCeEEEe
Q 028986 113 VYDITS-PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKN---GMFFIET 176 (200)
Q Consensus 113 v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 176 (200)
++|... ..+.+....|+..+........|+++|+||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999999 5556777999999988766679999999999997653 22233323332222 3348999
Q ss_pred cCC--CCCCHHHHHHHHHHhhcc
Q 028986 177 SAK--TADNINQLFEVLITCTSS 197 (200)
Q Consensus 177 S~~--~~~~i~~~~~~i~~~~~~ 197 (200)
|++ .+.++.++|..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999999888753
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.2e-24 Score=148.54 Aligned_cols=134 Identities=23% Similarity=0.264 Sum_probs=97.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----h-hhhcccccccCccE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----R-YAALAPLYYRGAAV 109 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~-~~~~~~~~~~~~d~ 109 (200)
||+++|++|+|||||+++|.+..+. +.++.+.. + .-.+|||||.. . +.... ..++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------Y------NDGAIDTPGEYVENRRLYSALI-VTAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------E------cCeeecCchhhhhhHHHHHHHH-HHhhcCCE
Confidence 7999999999999999999987542 22222111 1 12689999973 2 33332 34789999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLF 188 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~ 188 (200)
+++|||++++.++.. ..|...+ ..|+++|+||+|+.+. ....++..++++..+. +++++||+++.|++++|
T Consensus 66 vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 66 IALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 999999999887644 2343322 2389999999998643 3455666777777776 79999999999999999
Q ss_pred HHHH
Q 028986 189 EVLI 192 (200)
Q Consensus 189 ~~i~ 192 (200)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 139
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.8e-24 Score=147.58 Aligned_cols=162 Identities=17% Similarity=0.280 Sum_probs=131.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+++.+|+++|--++||||++++|..++.... .||.+..... +.+.+ +++++||..|++.++.+|.+|+++.+
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~ykn---~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYKN---ISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEcc---eEEEEEecCCCcccccchhhhccCCc
Confidence 457788999999999999999999998876554 5566655544 44443 89999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~ 182 (200)
++|||+|.++++-+...+..+..+.... ..+.|+++.+||.|+..... ..++.+.... ....+-.|+|..|+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 9999999999999988887777776654 36899999999999876533 3333333322 34568889999999
Q ss_pred CHHHHHHHHHHhhccc
Q 028986 183 NINQLFEVLITCTSSY 198 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~ 198 (200)
|+.+.++||.+.+..+
T Consensus 165 GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKKR 180 (181)
T ss_pred cHHHHHHHHHHHHhcc
Confidence 9999999999998765
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.7e-23 Score=160.26 Aligned_cols=159 Identities=21% Similarity=0.140 Sum_probs=111.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----hc---ccccccC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----AL---APLYYRG 106 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~~~~~~ 106 (200)
..|+|+|.++||||||+++|.+........+..+.......+.+.+ ..++.+||+||..+.. .+ +...+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~--~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD--GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC--ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 4788999999999999999998643221111112222222233322 2578999999963211 12 2223456
Q ss_pred ccEEEEEEeCCCH---HhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986 107 AAVAVVVYDITSP---DSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 107 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
++++++|+|+++. ++++.+..|.+.+.... ....|+++|+||+|+..... ..+..+.+++..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 67778888887776543 24689999999999865532 234445566666788999999999
Q ss_pred CCHHHHHHHHHHhh
Q 028986 182 DNINQLFEVLITCT 195 (200)
Q Consensus 182 ~~i~~~~~~i~~~~ 195 (200)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998865
No 141
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.7e-23 Score=161.64 Aligned_cols=155 Identities=23% Similarity=0.213 Sum_probs=111.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~ 101 (200)
...++|+++|.+|+|||||+|+|++........+..+.+.....+.+.++ ..+.+|||+|. +.+...+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 34589999999999999999999997643222222233344455555444 37899999996 2222222
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
..+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..... .... .....+++++||+++
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCC
Confidence 2477899999999999988877777777666665555789999999999864321 1111 122346899999999
Q ss_pred CCHHHHHHHHHHh
Q 028986 182 DNINQLFEVLITC 194 (200)
Q Consensus 182 ~~i~~~~~~i~~~ 194 (200)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=155.30 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=104.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhhhhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-----------QERYAA 98 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~ 98 (200)
....++|+++|++|+|||||+++|.+..+.....+ +.+.....+... .+.+||||| ++.+..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG-----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec-----ceEEEeCCccccccccCHHHHHHHHH
Confidence 34567999999999999999999998775433333 333322322221 589999999 455665
Q ss_pred ccccccc----CccEEEEEEeCCCHHhH-H---------HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH
Q 028986 99 LAPLYYR----GAAVAVVVYDITSPDSF-N---------KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE 164 (200)
Q Consensus 99 ~~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 164 (200)
.+..++. .++++++|+|.++...+ + ....++..+. ..++|+++|+||+|+.... .+...+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~ 152 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE 152 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence 5555543 46788999998653211 0 0011222222 2478999999999986443 334455
Q ss_pred HHHHcCC---------eEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 165 YAEKNGM---------FFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 165 ~~~~~~~---------~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+++.+++ +++++||++| |+++++++|.+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 5555554 4799999999 9999999999988764
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=3.8e-23 Score=141.78 Aligned_cols=153 Identities=42% Similarity=0.737 Sum_probs=117.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028986 38 LLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI 116 (200)
Q Consensus 38 i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 116 (200)
|+|++|+|||||++++.+... .....++. ........... .....+.+||+||...+...+..+++.+|++++|+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 589999999999999999776 33344444 44444444432 3347899999999988888778889999999999999
Q ss_pred CCHHhHHHHHHHH-HHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 117 TSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHEKREVPAQD-GIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 117 ~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
+++.++.....|. .........+.|+++|+||+|+.......... ..........+++++|++.+.++.+++++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9998888887762 33333446789999999999987654433322 3444555678999999999999999999986
No 144
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=1.8e-23 Score=157.10 Aligned_cols=155 Identities=20% Similarity=0.127 Sum_probs=105.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhcccccccC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLYYRG 106 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~ 106 (200)
+|+++|.+|||||||+|+|++......+.....+......+...++ .++.+|||||.... ......++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 5899999999999999999998654332221111111222222222 46899999996421 1223456788
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNIN 185 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 185 (200)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+..... ..+....++...+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999875554 344444443 3688999999999864322 12333444444444 79999999999999
Q ss_pred HHHHHHHHhhcc
Q 028986 186 QLFEVLITCTSS 197 (200)
Q Consensus 186 ~~~~~i~~~~~~ 197 (200)
+++++|.+.+.+
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999998765
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.7e-23 Score=144.20 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=106.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------cccccc--cCccE
Q 028986 38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAPLYY--RGAAV 109 (200)
Q Consensus 38 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~d~ 109 (200)
++|.+|+|||||++++.+........+..+.+.....+.+.. ..+.+|||||+..+.. .+..++ +.+|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG---KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC---eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 589999999999999999764433333333333334444432 4789999999865443 234444 48999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+++|+|++++.... .++..+.. .++|+++|+||+|+.....+.. ....+...++.+++++|++++.|++++++
T Consensus 78 vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 78 IVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 99999999864332 33333433 3689999999999976544433 34566677788999999999999999999
Q ss_pred HHHHhhc
Q 028986 190 VLITCTS 196 (200)
Q Consensus 190 ~i~~~~~ 196 (200)
+|.+.++
T Consensus 151 ~l~~~~~ 157 (158)
T cd01879 151 AIAELAE 157 (158)
T ss_pred HHHHHhc
Confidence 9988754
No 146
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=7.1e-25 Score=143.45 Aligned_cols=162 Identities=27% Similarity=0.368 Sum_probs=129.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+.++.+.++|-.+||||||+|....+.+.....++.+......+ .|. +.+.+||.+|++.+...|+.|++.++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgn-vtiklwD~gGq~rfrsmWerycR~v~ai 92 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGN-VTIKLWDLGGQPRFRSMWERYCRGVSAI 92 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCc-eEEEEEecCCCccHHHHHHHHhhcCcEE
Confidence 34678999999999999999999998888888888887664432 333 8999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i 184 (200)
+||+|+.+++.++..+..+..+.. ....++|+++++||.|+.... ....+.... ....+..|.+|+++..|+
T Consensus 93 vY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 93 VYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred EEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999999988888776666543 446789999999999986643 222222221 122345899999999999
Q ss_pred HHHHHHHHHhhcccC
Q 028986 185 NQLFEVLITCTSSYC 199 (200)
Q Consensus 185 ~~~~~~i~~~~~~~~ 199 (200)
+.+.+||+++-...+
T Consensus 171 d~~~~Wli~hsk~~~ 185 (186)
T KOG0075|consen 171 DITLDWLIEHSKSLR 185 (186)
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999876543
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.6e-23 Score=150.25 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=105.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc--CCCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR--GQFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA 100 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 100 (200)
+|+++|.+++|||||+++|++ ..+.... ..+.+.+.......+.. ..+.+.+|||||++++...+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHHHH
Confidence 799999999999999999997 4433322 11223333333333322 23789999999999999999
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-CCHHHHHHHHH-------HcCCe
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VPAQDGIEYAE-------KNGMF 172 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 172 (200)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..... ...+++.+++. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2233334443332 3688999999999864322 11233344432 23678
Q ss_pred EEEecCCCCCCHHHH------HHHHHHhhccc
Q 028986 173 FIETSAKTADNINQL------FEVLITCTSSY 198 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~------~~~i~~~~~~~ 198 (200)
++++|+++|.|+.+. +++|++++.++
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 999999999876433 44555555443
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.2e-23 Score=143.44 Aligned_cols=148 Identities=23% Similarity=0.311 Sum_probs=99.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh------hhccccc--cc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY------AALAPLY--YR 105 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~--~~ 105 (200)
++|+++|.|+||||||+|+|++........+..+.+.....+.+.+ ..+.++|+||.... ......+ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~---~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD---QQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT---EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC---ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 5899999999999999999999864322223333333334444433 57999999993211 1222233 36
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 185 (200)
..|++++|+|+++.+ .-..+...+.+. ++|+++++||+|....+.+.. ....+.+.++++++++||+++.|++
T Consensus 78 ~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 78 KPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 799999999998743 222333444444 789999999999865544333 3566777789999999999999999
Q ss_pred HHHHHH
Q 028986 186 QLFEVL 191 (200)
Q Consensus 186 ~~~~~i 191 (200)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=5.5e-23 Score=145.11 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=104.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----hcc---cccccCccEE
Q 028986 38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----ALA---PLYYRGAAVA 110 (200)
Q Consensus 38 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~---~~~~~~~d~~ 110 (200)
|+|++|||||||+++|.+........+..........+.+.++ ..+.+||+||..+.. ..+ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999997641111111111111122223212 578999999963221 121 2346779999
Q ss_pred EEEEeCCCH------HhHHHHHHHHHHHHHcCC-------CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEec
Q 028986 111 VVVYDITSP------DSFNKAQYWVKELQKHGS-------PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177 (200)
Q Consensus 111 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 177 (200)
++|+|+++. .+++....|...+..... .+.|+++|+||+|+..................+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 467777777777765432 4789999999999876544333222334444567899999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 028986 178 AKTADNINQLFEVLITC 194 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~ 194 (200)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998765
No 150
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=2.6e-22 Score=154.83 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=105.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhh-hh-------hccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQER-YA-------ALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~-------~~~~ 101 (200)
.+.++|+++|.+|||||||+|+|++..+....... .+.......+...+ .++.+|||||..+ +. ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC---eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 46679999999999999999999998764321111 11112222233322 4789999999732 11 1122
Q ss_pred ccccCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSA 178 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~ 178 (200)
..+..+|++++|+|..+. +... ..|+..+... +.|+++|+||+|+... ...++.+++.... ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 346789999999997763 4333 3455555433 4567889999998542 2445556655543 57999999
Q ss_pred CCCCCHHHHHHHHHHhhcc
Q 028986 179 KTADNINQLFEVLITCTSS 197 (200)
Q Consensus 179 ~~~~~i~~~~~~i~~~~~~ 197 (200)
++|.|+++++++|.+.+.+
T Consensus 199 ktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cCccCHHHHHHHHHHhCCC
Confidence 9999999999999998765
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.8e-22 Score=138.78 Aligned_cols=146 Identities=22% Similarity=0.254 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPLYY 104 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~ 104 (200)
++|+++|++|+|||||++++++...... ..+..........+... ..++.+|||||..+... .....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG---GIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC---CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 5799999999999999999998754221 11222222222233332 25789999999643321 122456
Q ss_pred cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
..+|++++|+|++++.+......+.. ....|+++|+||+|+...... .......+++++|++++.|+
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCH
Confidence 78999999999998766665543322 447899999999998754432 33445678999999999999
Q ss_pred HHHHHHHHHhh
Q 028986 185 NQLFEVLITCT 195 (200)
Q Consensus 185 ~~~~~~i~~~~ 195 (200)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=9.5e-22 Score=154.43 Aligned_cols=157 Identities=21% Similarity=0.189 Sum_probs=109.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 107 (200)
.|+++|.|+||||||+++|++........+..+.......+.+.++ ..+.+||+||..+ ...+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7899999999999999999986532111111112222222333222 4799999999532 11222223 4569
Q ss_pred cEEEEEEeCCCH---HhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 108 AVAVVVYDITSP---DSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 108 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
+++++|+|+++. +.++....|.+.+..... .+.|+++|+||+|+... .+...++++.++.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777777777766532 47899999999998432 344556666667789999999999
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
|+++++++|.+.+.+
T Consensus 314 GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 314 GLDELLYAVAELLEE 328 (424)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988765
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=7.7e-23 Score=135.52 Aligned_cols=114 Identities=32% Similarity=0.662 Sum_probs=84.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC--CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFD--PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
||+|+|++|||||||+++|++..+. .......+..+....... ......+.+||++|++.+...+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 7999999999999999999998765 122233333443333333 3443569999999999888887778999999999
Q ss_pred EEeCCCHHhHHHHHH---HHHHHHHcCCCCCeEEEEEeCCC
Q 028986 113 VYDITSPDSFNKAQY---WVKELQKHGSPDIVMALVGNKAD 150 (200)
Q Consensus 113 v~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D 150 (200)
|||++++.+++.+.. |+..+... ..++|+++|+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999988744 45555554 45699999999998
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3.1e-22 Score=142.76 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=109.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCcccc----------------ceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV----------------GASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
+|+|+|.+|+|||||+++|++........... ............ ...+.+||+||...+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~~~~~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP---DRRVNFIDTPGHEDFSS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC---CEEEEEEeCCCcHHHHH
Confidence 58999999999999999999876544331111 111111122221 36899999999988888
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHH--------
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEK-------- 168 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~-------- 168 (200)
.+..+++.+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...... ..+++.+....
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE 153 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence 88888999999999999987654332 233344433 47899999999998753221 12223333332
Q ss_pred ------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 169 ------NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 169 ------~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
...+++++|++++.|+++++++|.+.+.
T Consensus 154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3567999999999999999999998875
No 155
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=133.61 Aligned_cols=165 Identities=22% Similarity=0.514 Sum_probs=141.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
...-.+||.++|++..|||||+-.+.++.++..+..+.+..+..+++.+.... +.+.+||..|++++.....-..+.+-
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~-IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTD-ISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceE-EEEEEEecCCcHhhhccCceeecCcE
Confidence 34567899999999999999999999999988889999999999988885444 89999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-----cCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-----EVPAQDGIEYAEKNGMFFIETSAKTADN 183 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 183 (200)
+++++||++.+.++..+..|+.+.+......+|+ +|++|.|..-.. +.-..+++++++..+++++.||+..+.|
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999999998887767775 679999974321 1123455677888899999999999999
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
++.+|..++-++
T Consensus 174 v~KIFK~vlAkl 185 (205)
T KOG1673|consen 174 VQKIFKIVLAKL 185 (205)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=3.7e-22 Score=158.34 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=109.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LA 100 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~ 100 (200)
....++|+++|++|+|||||+|+|++...... ..+..+.+.....+.+. + ..+.+|||||..+... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~-g--~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN-G--ILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC-C--EEEEEeeCCCcccchhHHHHHHHHHH
Confidence 34568999999999999999999998754221 22223333334444443 2 5679999999743322 22
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
..+++++|++++|+|++++.+.+.. |+..+. ..+.|+++|+||+|+... ....++..++.+++++|+++
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence 4577899999999999988776654 655553 246799999999998543 12344556778899999997
Q ss_pred CCCHHHHHHHHHHhhccc
Q 028986 181 ADNINQLFEVLITCTSSY 198 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~~ 198 (200)
.|+.++|+.|.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 68999999888877653
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=3.4e-22 Score=160.75 Aligned_cols=161 Identities=24% Similarity=0.237 Sum_probs=109.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAAL 99 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~ 99 (200)
...++|+|+|.+++|||||+|+|++..+.. ...+..+.+.....+.. ++ ..+.+|||||. +.+...
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GG--KTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CC--EEEEEEECCCccccccccchHHHHHHH
Confidence 346899999999999999999999976432 22233333333334444 23 35789999994 223322
Q ss_pred c-cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHH-HHHHcCCeEEE
Q 028986 100 A-PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIE-YAEKNGMFFIE 175 (200)
Q Consensus 100 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~ 175 (200)
. ..+++.+|++++|+|++++.+...+. ++..+.. .+.|+++|+||+|+...... ...++.+ +.....+++++
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 2 23578899999999999987776654 4444433 47899999999999643211 0111111 12223468999
Q ss_pred ecCCCCCCHHHHHHHHHHhhccc
Q 028986 176 TSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+||++|.|++++|+.+.+.+.+.
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.6e-22 Score=143.83 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=101.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC----CCCCCC-----ccccceeEEEEEEEec---------CCcEEEEEEEeCCChhh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG----QFDPTS-----KVTVGASFLSQTIALQ---------DSTTVKFEIWDTAGQER 95 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~l~D~~g~~~ 95 (200)
+||+++|++++|||||+++|+.. .+.... ..+....+....+... .+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 111111 1222222222222210 12247899999999876
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHH------
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAE------ 167 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~------ 167 (200)
+..........+|++++|+|+++.........+. .. .. .+.|+++|+||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444566789999999998753333322221 11 11 2568999999999864322 11222222111
Q ss_pred -HcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 168 -KNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 168 -~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..+++++++|++++.|+++++++|.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988764
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=4.4e-22 Score=138.10 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=98.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----hhhhhcccccccCccEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----ERYAALAPLYYRGAAVA 110 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~ 110 (200)
+|+++|.+++|||||+|+|.+.... ...+. .+.+... .+||+||. .++.......++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~-----~~iDtpG~~~~~~~~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK-----GDIDTPGEYFSHPRWYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC-----CcccCCccccCCHHHHHHHHHHHhcCCEE
Confidence 6999999999999999998875311 11111 1122111 26999996 22222223347889999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC--eEEEecCCCCCCHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM--FFIETSAKTADNINQLF 188 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~ 188 (200)
++|+|+++..++. ..|+..+ ..+.|+++++||.|+... ..+...+++.+.+. +++++|++++.|++++|
T Consensus 69 l~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 69 IYVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 9999999876542 2333332 236789999999998542 34556677777765 89999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|.+.+.+
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 999888754
No 160
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=5.9e-22 Score=156.40 Aligned_cols=157 Identities=21% Similarity=0.170 Sum_probs=108.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--hhcc------ccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--AALA------PLYYR 105 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~------~~~~~ 105 (200)
.+|+|+|.+|+|||||+|+|++........+..+.+.....+.+.+.. .+.+|||+|..+. ...+ ...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~--~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG--ETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC--eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 589999999999999999999876543222223333333444443322 5789999997321 1112 22367
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe-EEEecCCCCCCH
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNI 184 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i 184 (200)
.+|++++|+|++++.+.+.+..|...+......++|+++|+||+|+..... ... . ....+.+ ++++||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence 899999999999988777776565555555455789999999999864311 111 1 1123444 588999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
++++++|.+.+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988753
No 161
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=3.4e-21 Score=127.16 Aligned_cols=166 Identities=23% Similarity=0.368 Sum_probs=136.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC--CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-hhcccccccC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP--TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-AALAPLYYRG 106 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~ 106 (200)
-.+..||+|+|..++|||+++..|......+ ...+|++..| ...+..+.+..-++.++||.|.... ..+-.+|++-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 3456799999999999999999998765433 2334444444 5555555665568999999997655 5677889999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 185 (200)
+|++++||+..+++||+.+..+...|.+.. +..+||++++||+|+.++.++..+.+..+|+...++++++++.+...+-
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 999999999999999988766555565544 5679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 028986 186 QLFEVLITCTS 196 (200)
Q Consensus 186 ~~~~~i~~~~~ 196 (200)
+-|.++...+.
T Consensus 165 epf~~l~~rl~ 175 (198)
T KOG3883|consen 165 EPFTYLASRLH 175 (198)
T ss_pred hHHHHHHHhcc
Confidence 99999987764
No 162
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.9e-21 Score=154.64 Aligned_cols=162 Identities=19% Similarity=0.104 Sum_probs=106.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hh---hccccccc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YA---ALAPLYYR 105 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~---~~~~~~~~ 105 (200)
...|+|+|.|+||||||+|+|.+........+..+.......+.+.+ .++.+||+||..+ .. ...-..+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~---~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD---TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC---eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 34789999999999999999998643221112222222222233322 5799999999421 11 11122357
Q ss_pred CccEEEEEEeCCCH----HhHHHHHHHHHHHHHcC-----------CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Q 028986 106 GAAVAVVVYDITSP----DSFNKAQYWVKELQKHG-----------SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG 170 (200)
Q Consensus 106 ~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 170 (200)
.+|++|+|+|+++. +.++.+..+...+.... ....|+++|+||+|+.+..+. .+.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence 79999999999852 34444444444443321 246899999999998654332 222233344557
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 171 MFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 171 ~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++++++|++++.|+++++.+|.+.+.+.
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999999887653
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.3e-21 Score=160.31 Aligned_cols=157 Identities=20% Similarity=0.214 Sum_probs=113.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC-------CCCCCc------cccceeEEEEEE--Eec--CCcEEEEEEEeCCChhhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ-------FDPTSK------VTVGASFLSQTI--ALQ--DSTTVKFEIWDTAGQERYA 97 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~~--~~~--~~~~~~~~l~D~~g~~~~~ 97 (200)
||+|+|+.++|||||+++|+... +...+. ...+.+.....+ .+. ++..+.+.+|||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999998742 111111 111333332222 222 4556899999999999999
Q ss_pred hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---eEE
Q 028986 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---FFI 174 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 174 (200)
..+..++..+|++|+|+|+++..+.+....|...+. .++|+++|+||+|+.... ..+...++...+++ .++
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi 158 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAI 158 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEE
Confidence 889999999999999999998766666555544332 367899999999986432 12233445555555 489
Q ss_pred EecCCCCCCHHHHHHHHHHhhcc
Q 028986 175 ETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++||++|.|++++|++|.+.+..
T Consensus 159 ~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 159 LASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EeeccCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999987753
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=4.4e-22 Score=158.68 Aligned_cols=149 Identities=24% Similarity=0.285 Sum_probs=107.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------ccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------APL 102 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 102 (200)
..++|+++|.+|+|||||+|+|++..... ...+..+.++....+.+. + ..+.+|||||..+.... ...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD-G--IPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC-C--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 45799999999999999999999876422 122222333333444442 2 46899999997543211 234
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
+++++|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++|++++.
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGE 356 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCC
Confidence 6788999999999998877665444432 3468999999999986543221 3345679999999999
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
|+++++++|.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=7.5e-22 Score=136.67 Aligned_cols=147 Identities=22% Similarity=0.161 Sum_probs=98.1
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccccccCc
Q 028986 37 VLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPLYYRGA 107 (200)
Q Consensus 37 ~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~ 107 (200)
+++|.+|+|||||+++|++..... ...+....+.........+ ..+.+|||||...... .+...++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG---REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC---eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999864211 1111122222222333322 5799999999765332 334567889
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQ 186 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~ 186 (200)
|++++|+|..++.+.... .+...+.. ...|+++|+||+|+...... .......+. .++++|++++.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999876443332 22233333 25899999999998654321 223334555 789999999999999
Q ss_pred HHHHHHHhh
Q 028986 187 LFEVLITCT 195 (200)
Q Consensus 187 ~~~~i~~~~ 195 (200)
++++|++.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.6e-21 Score=139.01 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAA 98 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~ 98 (200)
.....++|+++|++|+|||||+++|++..+.....++.+.+........ + ..+.+|||||. +.+..
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-N---DKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-C---CeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 3446789999999999999999999997644444444443332222221 1 57999999993 33444
Q ss_pred cccccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHHcCCeE
Q 028986 99 LAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEKNGMFF 173 (200)
Q Consensus 99 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~ 173 (200)
....++.. .+++++++|.+.+.+.... .+...+. ..+.|+++++||+|+....+.. .+.+.+.......++
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44445543 4678888998875333221 1122222 2367899999999986543211 122334444346789
Q ss_pred EEecCCCCCCHHHHHHHHHHhhcc
Q 028986 174 IETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
+++|++++.|+++++++|.+.+.+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999988765
No 167
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.9e-22 Score=128.85 Aligned_cols=159 Identities=25% Similarity=0.404 Sum_probs=126.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.++++|+++|-.++||||++..|+.+... +..++.+ +...++.+.+ +.+.+||.+|++..+.+|.+|+....++
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN---~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee---eEEeeeeccCchhhhHHHHhhccCCceE
Confidence 45889999999999999999999986532 2334444 4455566655 7899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHH-HcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQ-KHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i 184 (200)
|||+|..+++-++..+..+..+. ...-.+.|+++.+||.|+.... ..+++..+.+. ....+.++++.+|.++
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGL 166 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhH
Confidence 99999999988888876666544 3445688999999999997653 35566555432 3456889999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
.+-|.||.+.+.+
T Consensus 167 ~eglswlsnn~~~ 179 (180)
T KOG0071|consen 167 KEGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHHhhccC
Confidence 9999999987654
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=3.3e-21 Score=146.57 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=106.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhccccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLY 103 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~ 103 (200)
+.-.|+|+|++|||||||+|+|++...................+... +. .++.++||||.... .......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DD-AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CC-ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 34569999999999999999999976543332222222212222221 22 68999999995321 2333445
Q ss_pred ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCC
Q 028986 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTAD 182 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~ 182 (200)
+..+|++++|+|+++..+ .....++..+. ..+.|+++|+||+|+.............+....+ ..++++|++++.
T Consensus 82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 788999999999998321 12223333333 3368999999999997443323334444444443 579999999999
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
|+++++++|.+.+.+
T Consensus 158 gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 158 NVDELLDVIAKYLPE 172 (292)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999988754
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2e-21 Score=156.26 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPLYY 104 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~ 104 (200)
.+|+|+|.+|||||||+|+|++..... ...+..+.+.....+...+ ..+.+|||||.+ .+...+..++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG---RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC---cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 689999999999999999999875432 2222222233333333322 468999999964 2334456678
Q ss_pred cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
+.+|++|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... .+....+....+ ..+++||++|.|+
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence 89999999999998755432 334444443 478999999999985432 112122222223 3579999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
+++|++|++.+.+
T Consensus 188 ~eL~~~i~~~l~~ 200 (472)
T PRK03003 188 GDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHhhccc
Confidence 9999999988754
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=3.1e-21 Score=157.40 Aligned_cols=156 Identities=14% Similarity=0.194 Sum_probs=110.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
..+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+...++. .+.+|||||++.+...+...+..+|+
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~--~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK--MITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc--EEEEEECCCCcchhhHHHhhhccCCE
Confidence 4566789999999999999999999877655443333333333444443332 78999999999999988888999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC---------CeEEEecCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG---------MFFIETSAKT 180 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~ 180 (200)
+++|+|+++....+... .+.. ....++|+++++||+|+... ..+.....+...+ .+++++||++
T Consensus 162 aILVVda~dgv~~qT~e-~i~~---~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIE-AISH---AKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEEEECCCCCCHhHHH-HHHH---HHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 99999998642111111 1122 22347899999999998542 2233333333222 4799999999
Q ss_pred CCCHHHHHHHHHHh
Q 028986 181 ADNINQLFEVLITC 194 (200)
Q Consensus 181 ~~~i~~~~~~i~~~ 194 (200)
|.|+++++++|...
T Consensus 235 GeGI~eLl~~I~~~ 248 (587)
T TIGR00487 235 GDGIDELLDMILLQ 248 (587)
T ss_pred CCChHHHHHhhhhh
Confidence 99999999998653
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=3.1e-21 Score=154.11 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=106.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL---------- 99 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~---------- 99 (200)
...++|+++|.+++|||||+|+|++....... .+....+.....+.. ++ ..+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NG--KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CC--cEEEEEECCCccccccchhhHHHHHHH
Confidence 45689999999999999999999987532221 111222222222333 22 37899999996432211
Q ss_pred -ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-HH----cCCeE
Q 028986 100 -APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-EK----NGMFF 173 (200)
Q Consensus 100 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~ 173 (200)
...+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+..... ..++..+.. .. ..+++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCce
Confidence 123578899999999999886665543 3333333 3688999999999872211 122222222 22 24689
Q ss_pred EEecCCCCCCHHHHHHHHHHhhccc
Q 028986 174 IETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+++||++|.|++++|+++.+.+...
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999877643
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.9e-21 Score=140.34 Aligned_cols=162 Identities=16% Similarity=0.125 Sum_probs=102.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCC-----CccccceeEEEEEEE--------ec--------------C--C----
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPT-----SKVTVGASFLSQTIA--------LQ--------------D--S---- 80 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~--------~~--------------~--~---- 80 (200)
++|+++|+.|+|||||+.+|.+-..+.. ...+....+...... .. . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976421110 001111111000000 00 0 1
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--C
Q 028986 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--P 158 (200)
Q Consensus 81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~ 158 (200)
...++.+||+||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999988888888888999999999998742111111222223222 12468999999998643211 1
Q ss_pred HHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 159 AQDGIEYAEKN---GMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 159 ~~~~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.+++.+++... +++++++|++++.|+++++++|.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12333333332 5679999999999999999999987754
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.1e-21 Score=150.04 Aligned_cols=160 Identities=20% Similarity=0.132 Sum_probs=108.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhcccccccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLYYRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~ 107 (200)
.|+|+|.||||||||+|+|++........+..+.....-.+...+. ..+.++|+||..+- ....-..+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~--~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE--RSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC--cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 7899999999999999999986532111121221222222333222 36899999995321 11112346789
Q ss_pred cEEEEEEeCC---CHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecCCC
Q 028986 108 AVAVVVYDIT---SPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKT 180 (200)
Q Consensus 108 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~ 180 (200)
|++++|+|++ ..+.++....|++.+.... ....|+++|+||+|+...... .+.+.++....+ .+++++||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998 4456677777777776543 246889999999998654332 233344444443 4689999999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 028986 181 ADNINQLFEVLITCTSS 197 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~ 197 (200)
+.++++++++|.+.+.+
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998865
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=5.5e-21 Score=133.34 Aligned_cols=157 Identities=19% Similarity=0.169 Sum_probs=102.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhcccccc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLYY 104 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~ 104 (200)
..+|+++|++|+|||||+++|.+.................... . ......+.+||+||.... .......+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-Y-TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-E-EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 5689999999999999999999875432222111111111111 1 112267899999995322 12334457
Q ss_pred cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCC
Q 028986 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADN 183 (200)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~ 183 (200)
..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+....+...+....+.... ..+++++|++++.+
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 889999999999987211 112233334332 6789999999998743333333334444444 36899999999999
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
+++++++|.+.+
T Consensus 157 ~~~l~~~l~~~~ 168 (168)
T cd04163 157 VDELLEEIVKYL 168 (168)
T ss_pred hHHHHHHHHhhC
Confidence 999999998753
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=8.3e-21 Score=133.40 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=100.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhh----------h-hcc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----------A-ALA 100 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~-~~~ 100 (200)
.++|+++|++|+|||||+++|++........ +..........+... + ..+.+||+||.... . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD-G--KKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC-C--eeEEEEECCCCccccchhccHHHHHHHHH
Confidence 5789999999999999999999865322111 111112212222222 2 35789999995322 1 011
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH-HHHHc----CCeEEE
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-YAEKN----GMFFIE 175 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~ 175 (200)
...+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+........+...+ +...+ ..++++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 2345789999999999987665443 23333332 367899999999986653222222222 22222 368999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 028986 176 TSAKTADNINQLFEVLITC 194 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~ 194 (200)
+|++++.|+.++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998765
No 176
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=9.2e-21 Score=139.12 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=113.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPL 102 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 102 (200)
.+.--|+|+|.|++|||||+|+|++.+....+....++......+...+ ..++.++||||.. .+......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 4455799999999999999999999987666555444444444444333 3689999999932 23344555
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-c-CCeEEEecCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-N-GMFFIETSAKT 180 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~S~~~ 180 (200)
.+..+|+++||+|+.....- .....++.++. .+.|+++++||+|...+..... ...++... . ...++++||+.
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~-~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLL-KLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHH-HHHHHHHhhCCcceEEEeeccc
Confidence 67889999999999975222 22334444443 4678999999999877654222 22333322 2 23699999999
Q ss_pred CCCHHHHHHHHHHhhccc
Q 028986 181 ADNINQLFEVLITCTSSY 198 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~~ 198 (200)
|.+++.+.+.+...+.+-
T Consensus 157 g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cCCHHHHHHHHHHhCCCC
Confidence 999999999999888763
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=6.3e-21 Score=135.13 Aligned_cols=150 Identities=20% Similarity=0.182 Sum_probs=96.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhh
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYA 97 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~ 97 (200)
-++...++|+|+|++|+|||||+++|++..+.....++.+.+......... . .+.+||+||. ..+.
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C---cEEEEeCCCCccccCChhHHHHHH
Confidence 344677899999999999999999999975333333333333322222222 1 5899999994 2333
Q ss_pred hccccccc---CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHcC--
Q 028986 98 ALAPLYYR---GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKNG-- 170 (200)
Q Consensus 98 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~-- 170 (200)
.....+++ .+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+....+ ...+++++.+...+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 33344444 36899999999876444333 22333432 3688999999999864321 12334444444443
Q ss_pred CeEEEecCCCCCCHH
Q 028986 171 MFFIETSAKTADNIN 185 (200)
Q Consensus 171 ~~~~~~S~~~~~~i~ 185 (200)
..++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 479999999999873
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.5e-20 Score=153.95 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=111.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+.|+++|+.++|||||+++|++.. ++.......+.+.....+...+ ..+.+||+||++.+...+...+.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~---~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC---EEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 468999999999999999999743 2222333344444444444433 6899999999999988888888999999
Q ss_pred EEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC--CHHHHHHHHHHc----CCeEEEecCCC
Q 028986 111 VVVYDITS---PDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV--PAQDGIEYAEKN----GMFFIETSAKT 180 (200)
Q Consensus 111 i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~ 180 (200)
++|+|+++ +.+.+.+ ..+.. .++| +++|+||+|+...... ..+++.+++... +++++++|+++
T Consensus 78 ILVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred EEEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 99999997 3444333 22322 2566 9999999998654321 123444555443 57899999999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 028986 181 ADNINQLFEVLITCTSS 197 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~ 197 (200)
|.|+++++++|.+.+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999998877654
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=3.6e-21 Score=137.37 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=106.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
+..+|+++|+.++|||||+.+|......... ............+. .......+.++|+||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-KNENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-BTESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-ccccccceeecccccc
Confidence 4679999999999999999999864321110 00111111122222 1233478999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHHc
Q 028986 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEKN 169 (200)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~ 169 (200)
..+.......+..+|++|+|+|+.+..... ....+..+... ++|+++|+||+|+...+ ..+... .+.+..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~--~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKE--LEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHH--HHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhh--HHHHHHHHHHHhcccc
Confidence 998888888899999999999999763222 23333444433 67799999999987221 111222 232222
Q ss_pred ------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 170 ------GMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 170 ------~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.++++++|+.+|.|++++++.|.+.+.
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999998875
No 180
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.2e-21 Score=129.92 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=123.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCC-------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL 102 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 102 (200)
.+..+.|+|+|..++|||||+.++..... +....++.+.......+. ...+.+||..|++..+++|..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-----~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-----NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-----cceeEEEEcCChHHHHHHHHH
Confidence 35567899999999999999988865321 112234444444433333 257999999999999999999
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH------HcCCeEEE
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE------KNGMFFIE 175 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~ 175 (200)
|+..++++|+++|+++++-++.....+..+... ...++|+++.+||.|+....+ .+++..... +..+++.+
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCcccc
Confidence 999999999999999999898887766665443 367899999999999866433 333333222 23567999
Q ss_pred ecCCCCCCHHHHHHHHHHhhccc
Q 028986 176 TSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+|+.+|+||.+...|+...+.+.
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999988765
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=4e-20 Score=153.23 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=109.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce--eEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA--SFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
.....+|+|+|+.++|||||+++|....+.......... ......+.. ++....+.+|||||++.+...+..++..+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY-KDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe-cCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 456679999999999999999999987654332222222 222222222 22347899999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-------HHcC--CeEEEecC
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-------EKNG--MFFIETSA 178 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~S~ 178 (200)
|++|+|+|+++......... +..+ ...++|+++++||+|+.... .+.+.+.. ..++ ++++++||
T Consensus 320 DiaILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred CEEEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 99999999987422222111 1222 23478999999999986532 22222221 2233 68999999
Q ss_pred CCCCCHHHHHHHHHHhh
Q 028986 179 KTADNINQLFEVLITCT 195 (200)
Q Consensus 179 ~~~~~i~~~~~~i~~~~ 195 (200)
++|.|+++++++|....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998754
No 182
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=3.3e-23 Score=140.95 Aligned_cols=167 Identities=28% Similarity=0.521 Sum_probs=144.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.+.-++++|+|..|+|||+++.++....+..++..+++.++..+.....+...+++++||+.|++++..+..-|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 56788999999999999999999999888888888899888777777777777899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCcCC-HHHHHHHHHHcCC-eEEEecCCCCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKNGM-FFIETSAKTADN 183 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~S~~~~~~ 183 (200)
.++|||++...+|+....|.+.+-.. ....+|+++..||+|+....... .....++++++++ .++++|+|.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 99999999999999999999887432 24467899999999986653222 4667788888887 599999999999
Q ss_pred HHHHHHHHHHhhc
Q 028986 184 INQLFEVLITCTS 196 (200)
Q Consensus 184 i~~~~~~i~~~~~ 196 (200)
++|+-..+++++.
T Consensus 182 i~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 182 IPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999998764
No 183
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.8e-20 Score=153.62 Aligned_cols=146 Identities=23% Similarity=0.236 Sum_probs=103.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc------ccccc--cCccEEE
Q 028986 40 GDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL------APLYY--RGAAVAV 111 (200)
Q Consensus 40 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i 111 (200)
|++|+|||||+|+|++........+..+.+.....+.+.+ .++++|||||+.++... ...++ ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~---~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG---EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC---eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999999765333333333333333444432 46899999998765432 22232 3689999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
+|+|+++.+. ...+...+. ..++|+++|+||+|+.+.+.+. .+.+++.+..+++++++|+++|.|++++++++
T Consensus 78 ~VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 78 NVVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EEecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999987432 122222332 3478999999999986554443 34577788889999999999999999999999
Q ss_pred HHhh
Q 028986 192 ITCT 195 (200)
Q Consensus 192 ~~~~ 195 (200)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=5.6e-20 Score=150.87 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=110.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCC--CCC-----CC------ccccceeEEEE--EEEe--cCCcEEEEEEEeCCChhh
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----TS------KVTVGASFLSQ--TIAL--QDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~--~~~~~~~~~l~D~~g~~~ 95 (200)
.-+|+|+|+.++|||||+.+|+... ... .. ....+.+.... .+.+ .++..+.+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999998632 110 00 01112222111 1222 245558899999999999
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe---
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF--- 172 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--- 172 (200)
+...+..++..+|++|+|+|++++........|.... ..++|+++|+||+|+..... .....++...+++.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASD 160 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcce
Confidence 9988999999999999999999875555444444332 23678999999999854321 22233444445553
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 173 FIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++++||++|.|+++++++|.+.+..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999987753
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=4.8e-20 Score=153.96 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=108.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
......|+|+|+.++|||||+++|....+..........+.....+.+.+ ..+++|||||++.|...+...+..+|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~---~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG---GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC---EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 45677899999999999999999988665433322222223223333322 579999999999999888888999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH-------HHHHcC--CeEEEecCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-------YAEKNG--MFFIETSAKT 180 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~S~~~ 180 (200)
+|+|+|+++...-+... .+......++|+++++||+|+.... .+.... ++..++ ++++++||++
T Consensus 364 aILVVdAddGv~~qT~e----~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 364 VVLVVAADDGVMPQTIE----AINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEEECCCCCCHhHHH----HHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 99999998742111111 1222224478999999999985432 111111 122233 6899999999
Q ss_pred CCCHHHHHHHHHHh
Q 028986 181 ADNINQLFEVLITC 194 (200)
Q Consensus 181 ~~~i~~~~~~i~~~ 194 (200)
|.|+++++++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998753
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.4e-20 Score=128.98 Aligned_cols=152 Identities=21% Similarity=0.172 Sum_probs=101.3
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcccccccCccE
Q 028986 38 LLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALAPLYYRGAAV 109 (200)
Q Consensus 38 i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d~ 109 (200)
|+|++|+|||||+++|++..... ................... ...+.+||+||..... .....++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP--LGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC--CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 58999999999999999865442 1222222222222222211 2579999999965433 233447788999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH---HHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD---GIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
+++++|++......... +..... ....|+++|+||+|+.......... ........+++++++|++++.|+.+
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 99999999876555443 333332 4578899999999987654322211 1222233467899999999999999
Q ss_pred HHHHHHHhh
Q 028986 187 LFEVLITCT 195 (200)
Q Consensus 187 ~~~~i~~~~ 195 (200)
++++|.+.+
T Consensus 155 l~~~l~~~~ 163 (163)
T cd00880 155 LREALIEAL 163 (163)
T ss_pred HHHHHHhhC
Confidence 999998753
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=9e-20 Score=145.72 Aligned_cols=151 Identities=21% Similarity=0.180 Sum_probs=104.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCCh--------hhhhhccccccc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ--------ERYAALAPLYYR 105 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~ 105 (200)
+|+|+|.+|||||||+|+|++...... ..+....+.....+...+ ..+.+|||||. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG---REFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC---eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 589999999999999999998763221 112222233333333322 46999999995 344555667789
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI 184 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 184 (200)
.+|++++|+|+.++.+... ..+...+++ .+.|+++|+||+|+...... ..+ +..++. .++++||+.|.|+
T Consensus 78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCCh
Confidence 9999999999987533322 222333333 36789999999998654321 122 234566 7999999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
.++++++.+.+.+
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=8.7e-20 Score=146.00 Aligned_cols=147 Identities=21% Similarity=0.194 Sum_probs=100.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhcccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPLYY 104 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 104 (200)
++|+|+|.+|||||||+|+|.+..... ...+..+.+.....+...+ ..+.+|||||... +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG---REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC---cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 479999999999999999999876421 1122222233333344432 6799999999765 233345567
Q ss_pred cCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986 105 RGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTA 181 (200)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 181 (200)
..+|++++|+|+.++.+.. .+..|+ ... +.|+++|+||+|+... .+...++ ..+++ .++++||++|
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKIL---RKS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 8899999999998753332 223333 222 6899999999996432 1222333 34555 4899999999
Q ss_pred CCHHHHHHHHHHh
Q 028986 182 DNINQLFEVLITC 194 (200)
Q Consensus 182 ~~i~~~~~~i~~~ 194 (200)
.|+.+++++|.+.
T Consensus 148 ~gv~~l~~~I~~~ 160 (435)
T PRK00093 148 RGIGDLLDAILEE 160 (435)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999873
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=7.9e-20 Score=146.23 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=103.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhh-
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAA- 98 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~- 98 (200)
...++|+|+|.+|+|||||+|+|++....... .+....+.....+.. ++ ..+.+|||||... +..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DG--QKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CC--eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 45799999999999999999999986532221 121222222222222 22 4688999999422 111
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH-HHHHH----cCCeE
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI-EYAEK----NGMFF 173 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~ 173 (200)
....+++.+|++++|+|++++.+..... +...+.+ .+.|+++|+||+|+..... .++.. .+... ..+++
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i 321 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPI 321 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCE
Confidence 1123578899999999999876555432 3333333 3678999999999863321 11222 12121 25689
Q ss_pred EEecCCCCCCHHHHHHHHHHhhcc
Q 028986 174 IETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
+++||+++.|++++++.+.+.+.+
T Consensus 322 ~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 322 VFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.9e-19 Score=150.96 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=109.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----------ccc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL----------APL 102 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~ 102 (200)
.++|+++|++|||||||+|+|++..... ....+.+...+...+. ....++++||+||..++... ...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 5689999999999999999999865422 2223444434433332 23368999999997654321 112
Q ss_pred c--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 103 Y--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 103 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
+ ...+|++++|+|+++.+.. ..+...+.+ .++|+++++||+|+.+.+.. ....+++.+.++++++++|+++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2 2478999999999985432 234444443 36899999999998755444 3455777788999999999999
Q ss_pred CCCHHHHHHHHHHhh
Q 028986 181 ADNINQLFEVLITCT 195 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~ 195 (200)
+.|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988764
No 191
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.83 E-value=1e-19 Score=131.18 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=86.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc-cEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA-AVAVVV 113 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v 113 (200)
+|+++|+++||||||+++|....+.....++ ........... ......+.+||+||+.++...+..+++.+ +++|||
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~-~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNS-EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeec-CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 6899999999999999999998765554433 22222111111 12236799999999999988888889998 999999
Q ss_pred EeCCCH-HhHHHHHHHHHHHHH---cCCCCCeEEEEEeCCCCCCC
Q 028986 114 YDITSP-DSFNKAQYWVKELQK---HGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 114 ~d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~iiv~nK~D~~~~ 154 (200)
+|+.+. .++..+..|+..+.. ....++|+++++||+|+...
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 999987 677766555544322 22368999999999998643
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.1e-19 Score=149.90 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=106.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhhhc-
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYAAL- 99 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~- 99 (200)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+ ++. .+.+|||||.. .+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 45799999999999999999999976421 11222223332333344 333 57799999942 12221
Q ss_pred ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-Hc----CCeEE
Q 028986 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-KN----GMFFI 174 (200)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~ 174 (200)
....++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+..... .+...+... .. .++++
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence 123468899999999999887766654 3344433 3689999999999865322 122222222 11 34679
Q ss_pred EecCCCCCCHHHHHHHHHHhhccc
Q 028986 175 ETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++||++|.|++++++.+.+.+.++
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 193
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.5e-20 Score=126.11 Aligned_cols=162 Identities=30% Similarity=0.547 Sum_probs=139.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++++++|..|.|||+++++...+.|...+.++.+.......+....+ .+++..|||.|++.+..+...++-+..+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g-~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccC-cEEEEeeecccceeecccccccEEeccee
Confidence 45789999999999999999999999999999999999886665554444 59999999999999999999999889999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
|++||+..+.++.++..|...+.+.+. ++||++++||.|..... .......+-+..++.++++|++.+.|...-|.|
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHH
Confidence 999999999999999999999888754 59999999999975543 123334555667889999999999999999999
Q ss_pred HHHhhc
Q 028986 191 LITCTS 196 (200)
Q Consensus 191 i~~~~~ 196 (200)
+.+++.
T Consensus 164 LarKl~ 169 (216)
T KOG0096|consen 164 LARKLT 169 (216)
T ss_pred Hhhhhc
Confidence 998764
No 194
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=9.1e-19 Score=128.68 Aligned_cols=152 Identities=19% Similarity=0.165 Sum_probs=99.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcccccccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALAPLYYRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 107 (200)
+|+++|++|+|||||+++|.+........+....+.....+.+.+ ..+++||+||..+.. .....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG---AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC---eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 689999999999999999998653221111112222233333322 579999999964321 2233468899
Q ss_pred cEEEEEEeCCCHH-hHHHHHHHHHH-----------------------------------------HHH-----------
Q 028986 108 AVAVVVYDITSPD-SFNKAQYWVKE-----------------------------------------LQK----------- 134 (200)
Q Consensus 108 d~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------i~~----------- 134 (200)
|++++|+|++++. ..+.+..++.. +.+
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999998764 33333333321 000
Q ss_pred -------------cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 135 -------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 135 -------------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.....+|+++|+||+|+.. .++...++.. ..++++|++++.|++++|+.|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1123478999999999853 3444445443 35899999999999999999988763
No 195
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=4.6e-20 Score=120.27 Aligned_cols=159 Identities=18% Similarity=0.257 Sum_probs=118.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.++++|+++|-.++|||||+..|.+.+. .+..++.+ +..+.+.+ ++. +++.+||.+|+...+..|..|+.+.|++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~-~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEY-DGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEee-cCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence 6789999999999999999999998643 23333444 44445554 333 7999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH-----HHHHcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-----YAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i 184 (200)
|||+|..+..-|+.+...+-. +...+...+|+++..||.|+..... .+++.. ..+...+.+-+||+..++++
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 999998888778877554444 4444466799999999999865422 111111 11122345789999999999
Q ss_pred HHHHHHHHHhhc
Q 028986 185 NQLFEVLITCTS 196 (200)
Q Consensus 185 ~~~~~~i~~~~~ 196 (200)
.+-.+|++....
T Consensus 168 ~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 168 TDGSDWVQSNPE 179 (185)
T ss_pred cCcchhhhcCCC
Confidence 998888876544
No 196
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-20 Score=123.41 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=119.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
.+.+|+++|--|+||++++.++.-.+...+ .|+++... ..+.+ ++.++++||..|+-..+..|..|+.+.|++|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnv--e~v~y---KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNV--ETVPY---KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCc--ccccc---ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 678999999999999999988877665433 23344332 33333 3378999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 112 VVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 112 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
||+|.++++..... ..++..+.+.......+++++||.|........ ........+..-+.++++||..|+|++..
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 99999998766555 444555555444557789999999986542211 11111222233467999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
++||.+.++++
T Consensus 171 ~DWL~~~l~~~ 181 (182)
T KOG0072|consen 171 MDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHhcc
Confidence 99999998875
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=9.5e-19 Score=146.97 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=101.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~ 101 (200)
....+|+|+|.+++|||||+|+|++....... .+..+.+......... ...+.+|||||.+. +.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~---~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA---GTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC---CEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 34568999999999999999999986542211 1222222222222221 25789999999642 334445
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKT 180 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 180 (200)
.++..+|++++|+|+++..+.. -..|...+.. .+.|+++|+||+|+.... .....+.. .+. ..+++||++
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~ 420 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMH 420 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCC
Confidence 5688999999999998642211 1234444543 478999999999985431 12222222 222 357999999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 028986 181 ADNINQLFEVLITCTSS 197 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~ 197 (200)
|.|+.+++++|++.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
No 198
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.82 E-value=6.5e-20 Score=144.41 Aligned_cols=164 Identities=21% Similarity=0.289 Sum_probs=126.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+++|+.|+||||||.+|...++.+..++.......+..+.. + . +...++|++..++........++.+|
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP-e-~-vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP-E-N-VPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc-C-c-CceEEEecccccchhHHHHHHHhhcC
Confidence 4467889999999999999999999999987776655444443322222 1 1 56899999877666666677889999
Q ss_pred EEEEEEeCCCHHhHHHH-HHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHH-HHHHHHHcCC--eEEEecCCCCC
Q 028986 109 VAVVVYDITSPDSFNKA-QYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQD-GIEYAEKNGM--FFIETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~--~~~~~S~~~~~ 182 (200)
+++++|+.+++.+++.+ .+|+..+++.. ..++|+|+|+||.|.......+.+. ...+..++.- ..++|||++-.
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 99999999999999988 88999998875 3679999999999997654443333 3344443322 37999999999
Q ss_pred CHHHHHHHHHHhh
Q 028986 183 NINQLFEVLITCT 195 (200)
Q Consensus 183 ~i~~~~~~i~~~~ 195 (200)
++.++|....+.+
T Consensus 162 n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 162 NVSELFYYAQKAV 174 (625)
T ss_pred hhHhhhhhhhhee
Confidence 9999998876654
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=3.5e-19 Score=141.90 Aligned_cols=152 Identities=17% Similarity=0.120 Sum_probs=99.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCC--CCC-----------------------------CCccccceeEEEEEEEec
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----------------------------TSKVTVGASFLSQTIALQ 78 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 78 (200)
++..++|+++|+.++|||||+.+|+... ... ......+.+..... +.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence 4667899999999999999999998621 110 00111222222222 22
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA--QYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
. ..+.+.+||+||++++.......+..+|++++|+|++++++.... ..++...... ...|+++++||+|+....+
T Consensus 82 ~-~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 82 T-DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDE 158 (426)
T ss_pred c-CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccH
Confidence 2 236899999999998877666678899999999999987533111 1112222222 2357999999999864221
Q ss_pred ----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 028986 157 ----VPAQDGIEYAEKNG-----MFFIETSAKTADNINQ 186 (200)
Q Consensus 157 ----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 186 (200)
...+++.++++..+ ++++++||++|.|+.+
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 11244555666554 5799999999999986
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=3.1e-19 Score=141.08 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=105.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----cccceeEEEEE------------EEec---CC------cEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----VTVGASFLSQT------------IALQ---DS------TTVK 84 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~---~~------~~~~ 84 (200)
+..++|+++|+.++|||||+++|.+...+.... .+....+.... .... +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999997642211100 11111110000 0000 00 1357
Q ss_pred EEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHH
Q 028986 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDG 162 (200)
Q Consensus 85 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~ 162 (200)
+.+||+||++++...+......+|++++|+|++++.........+..+.... ..|+++++||+|+...... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999998888888888999999999996431112222233333221 2468999999998653221 12333
Q ss_pred HHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 163 IEYAEKN---GMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 163 ~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.++.... +++++++|++++.|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444332 578999999999999999999988654
No 201
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=6.2e-19 Score=143.86 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----cccceeEEEEEEEec---C---C-----cEEEEEEEeCCChhhhhh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTIALQ---D---S-----TTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~---~---~-----~~~~~~l~D~~g~~~~~~ 98 (200)
.-|+|+|++++|||||+++|.+..+..... .+.+..+........ . . ....+.+|||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 459999999999999999999876543221 122222211111000 0 0 002388999999999999
Q ss_pred cccccccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC------------CHHH--
Q 028986 99 LAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV------------PAQD-- 161 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~-- 161 (200)
++..++..+|++++|+|+++ +.+++.+. .+. ..++|+++++||+|+...... ....
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 88889999999999999987 44444332 222 236789999999998642100 0000
Q ss_pred ----------HHHHHH------------Hc--CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 162 ----------GIEYAE------------KN--GMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 162 ----------~~~~~~------------~~--~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..++.+ .+ .++++++||++|+|+++++.+|....+
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 001111 11 358999999999999999999876443
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=134.68 Aligned_cols=161 Identities=22% Similarity=0.197 Sum_probs=110.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----------cc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----------LA 100 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~ 100 (200)
..++|+|+|.|++|||||+|+|++.+..-.+. ..+++.......+.... ..+.++||.|...... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~~~-~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFERDG-RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEECC-eEEEEEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999987544333 22333223332222111 4789999999432221 12
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEE
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIE 175 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 175 (200)
...+..+|++++|+|++.+.+-+.. .....+.+ .+.++++|+||+|+.+..+...++.++.... ..++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 2346779999999999998544443 23344443 3677999999999977644444444433332 1457999
Q ss_pred ecCCCCCCHHHHHHHHHHhhccc
Q 028986 176 TSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+||+++.+++++|+.+.+.+...
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=9.8e-19 Score=122.23 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=96.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhcccccc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAALAPLYY 104 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~ 104 (200)
.|+++|++|+|||||++.+.+..+.+...++.+.+.......... .+.+||+||. +.+......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND----KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC----eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 489999999999999999996554444444444333332222221 7899999993 22333333344
Q ss_pred c---CccEEEEEEeCCCHHhH--HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHH--HcCCeEEE
Q 028986 105 R---GAAVAVVVYDITSPDSF--NKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAE--KNGMFFIE 175 (200)
Q Consensus 105 ~---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~ 175 (200)
. +.+++++++|.....+. ..+..|+. .. +.|+++|+||+|+....+.. ........+ ....++++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 3 46789999998865322 22333332 22 47899999999985432211 112222222 23457999
Q ss_pred ecCCCCCCHHHHHHHHHHhh
Q 028986 176 TSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~ 195 (200)
+|++++.++.+++++|.+.+
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 151 FSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998753
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=5.6e-19 Score=140.74 Aligned_cols=155 Identities=18% Similarity=0.134 Sum_probs=97.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------------------------ccccceeEEEEEEEecCC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------------------------KVTVGASFLSQTIALQDS 80 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 80 (200)
++..++|+++|++++|||||+++|+........ ....+.+.......+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 466799999999999999999999853211000 00112222122222222
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc---
Q 028986 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--- 156 (200)
Q Consensus 81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--- 156 (200)
..+++.+|||||++.+.......+..+|++++|+|+++.... .....++..+... ...|+++++||+|+.....
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence 236899999999988776555667889999999999873112 1112222223322 1246899999999865221
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 028986 157 -VPAQDGIEYAEKNG-----MFFIETSAKTADNINQL 187 (200)
Q Consensus 157 -~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 187 (200)
...+++.+++...+ ++++++|+++|.|+.+.
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 11234445555444 57999999999999863
No 205
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=1e-18 Score=138.17 Aligned_cols=166 Identities=19% Similarity=0.161 Sum_probs=104.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----ccccceeEEEEEE----------------EecC-----CcE
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----KVTVGASFLSQTI----------------ALQD-----STT 82 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~----------------~~~~-----~~~ 82 (200)
..+..++|+++|+.++|||||+.+|.+...+... ..+....+..... .... ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4567799999999999999999999663211111 1111111100000 0000 112
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PA 159 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~ 159 (200)
..+.+||+||++++..........+|++++|+|++++. ..+... .+..+... ...|+++|+||+|+...... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57899999999988776666667789999999999642 111111 22222222 12368999999998654321 12
Q ss_pred HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 160 QDGIEYAEKN---GMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 160 ~~~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
+++..++... +.+++++|++++.|+++++++|.+.+.+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 3334444332 5689999999999999999999987653
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=1.1e-18 Score=142.79 Aligned_cols=158 Identities=15% Similarity=0.237 Sum_probs=109.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC--CCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG--QFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA 100 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 100 (200)
+|+|+|+.++|||||+++|+.. .+.... ....+.+.......+... .+++.+|||||+.++...+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~-~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN-GTKINIVDTPGHADFGGEV 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC-CEEEEEEECCCHHHHHHHH
Confidence 7999999999999999999863 221111 011122332222222222 2789999999999999888
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHH-------HcCCe
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAE-------KNGMF 172 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 172 (200)
..+++.+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+...+.. ..+++..+.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998642 33445566655543 6789999999998643221 1223333332 23568
Q ss_pred EEEecCCCCC----------CHHHHHHHHHHhhcc
Q 028986 173 FIETSAKTAD----------NINQLFEVLITCTSS 197 (200)
Q Consensus 173 ~~~~S~~~~~----------~i~~~~~~i~~~~~~ 197 (200)
++++|++.|. ++..+|+.|++.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999987753
No 207
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=7.9e-19 Score=117.31 Aligned_cols=135 Identities=22% Similarity=0.289 Sum_probs=96.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----hhhhhcccccccCccEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----ERYAALAPLYYRGAAVA 110 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~ 110 (200)
||+++|+.|||||||+++|.+... .+..|....+. =.++||||. +.+.........++|.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------------DNTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------------ccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 799999999999999999999654 23333333331 134999994 33444444555689999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFE 189 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 189 (200)
+++.|++++.+...-. +. .....|+|-|+||+|+..+ ....+.++++.+..|+ .+|++|+.+++|++++.+
T Consensus 68 ~ll~dat~~~~~~pP~-fa------~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 68 LLLQDATEPRSVFPPG-FA------SMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEEecCCCCCccCCch-hh------cccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999999874332111 11 1235789999999999743 2345666777777777 489999999999999999
Q ss_pred HHH
Q 028986 190 VLI 192 (200)
Q Consensus 190 ~i~ 192 (200)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 208
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=116.15 Aligned_cols=156 Identities=28% Similarity=0.378 Sum_probs=116.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-------C-----ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-------S-----KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 97 (200)
+....||+|+|+.++||||+++.+........ . +.+...++.. ..+.++ ..+++++||||+++.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~~~--~~v~LfgtPGq~RF~ 82 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDED--TGVHLFGTPGQERFK 82 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEcCc--ceEEEecCCCcHHHH
Confidence 45677999999999999999999998653111 0 0112222221 122121 468999999999999
Q ss_pred hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEE
Q 028986 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIE 175 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~ 175 (200)
-.|.-+.+.+.++|+++|.+.+..+ .....++.+.... .+|+++.+||.|+.... +.+.+.++.+.. ..++++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceee
Confidence 9999999999999999999998777 4444555554432 28999999999997754 355666666554 789999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 028986 176 TSAKTADNINQLFEVLITC 194 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~ 194 (200)
.++.++++..+.+..+..+
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999999888776
No 209
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=134.37 Aligned_cols=150 Identities=20% Similarity=0.175 Sum_probs=103.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAPLY 103 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 103 (200)
..|+|+|.||||||||+|+|++....-.. .+..+.+..+....... ..+.++||+|.+ .........
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~---~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG---REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC---ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 46999999999999999999997654322 23333333334444433 469999999943 223445567
Q ss_pred ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCC
Q 028986 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTAD 182 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 182 (200)
+..||++|||+|....-+-.+ ....+.++ ..++|+++|+||+|-... .+...++. .+|. .++.+||..|.
T Consensus 81 i~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~~----e~~~~efy-slG~g~~~~ISA~Hg~ 151 (444)
T COG1160 81 IEEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLKA----EELAYEFY-SLGFGEPVPISAEHGR 151 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCchh----hhhHHHHH-hcCCCCceEeehhhcc
Confidence 888999999999987533322 22223333 336889999999996421 22333343 3444 69999999999
Q ss_pred CHHHHHHHHHHhh
Q 028986 183 NINQLFEVLITCT 195 (200)
Q Consensus 183 ~i~~~~~~i~~~~ 195 (200)
|+.++++.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999986
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=5.7e-18 Score=121.08 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=94.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCC---------C-----CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFD---------P-----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
.++|+++|+.++|||||+++|+..... . ......+.+.......+.. ...++.++||||+..+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIK 80 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHH
Confidence 478999999999999999999863100 0 0001112222222233322 235789999999988887
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHc-----
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKN----- 169 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~----- 169 (200)
.....+..+|++++|+|+...-. ......+..+... ++| +++++||+|+....+. ..+++.++....
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 77778889999999999986522 2223333444433 455 7788999998533221 112344444433
Q ss_pred CCeEEEecCCCCCCH
Q 028986 170 GMFFIETSAKTADNI 184 (200)
Q Consensus 170 ~~~~~~~S~~~~~~i 184 (200)
+++++++|+++|.++
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 368999999999874
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=1.4e-18 Score=125.79 Aligned_cols=148 Identities=22% Similarity=0.179 Sum_probs=90.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----------------------------cccceeEEEEEEEecCCcEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----------------------------VTVGASFLSQTIALQDSTTVKF 85 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
||+|+|++++|||||+++|+......... ...+.+.......+.. ...++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 68999999999999999998643211100 0011111111111211 22578
Q ss_pred EEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC----CHHH
Q 028986 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV----PAQD 161 (200)
Q Consensus 86 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~----~~~~ 161 (200)
.+|||||++++...+...++.+|++++|+|++.+..-. .......+... ...++++|+||+|+...... ...+
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887766666788999999999998753211 12222222222 12357889999998643211 1123
Q ss_pred HHHHHHHcC---CeEEEecCCCCCCHHH
Q 028986 162 GIEYAEKNG---MFFIETSAKTADNINQ 186 (200)
Q Consensus 162 ~~~~~~~~~---~~~~~~S~~~~~~i~~ 186 (200)
..++...++ .+++++||+++.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 344445555 3589999999999875
No 212
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=6.5e-18 Score=128.90 Aligned_cols=161 Identities=24% Similarity=0.243 Sum_probs=120.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAAL 99 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~ 99 (200)
.+..-..|.++|..++|||||+|+|++...........+.+.+.+.+.+.++. .+.+.||.|. +.|.+.
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~--~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR--KVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc--eEEEecCccCcccCChHHHHHHHHH
Confidence 34556689999999999999999999876655555555556666666676644 7899999993 223333
Q ss_pred ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
.+ ....+|+++.|+|++++...+.+..-...+.+.....+|+|+|.||+|+..+.. .........-..+.+||+
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~ 339 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAK 339 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEec
Confidence 22 345699999999999998778887777788887777799999999999765433 111222111148999999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 028986 180 TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~ 197 (200)
++.|++.+++.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999988764
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=3.9e-18 Score=140.28 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=103.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
-|.++|+.++|||||+++|++.. +........+.+.....+...++ ..+.+||+||++.+.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 48899999999999999999743 22222222222222222223233 35899999999998877777788999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC--CHHHHHHHHHHcC---CeEEEecCCCCCCHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV--PAQDGIEYAEKNG---MFFIETSAKTADNIN 185 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~i~ 185 (200)
+|+|++.... ......+..+... ++| +++|+||+|+.+.... ..+++.+++...+ .+++++|+++|.|++
T Consensus 80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 9999987421 1112222333322 344 6799999998643221 1233444444433 689999999999999
Q ss_pred HHHHHHHHhhcc
Q 028986 186 QLFEVLITCTSS 197 (200)
Q Consensus 186 ~~~~~i~~~~~~ 197 (200)
+++++|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
No 214
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=134.65 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=106.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh--------hccc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------ALAP 101 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~ 101 (200)
-..-++++|+|.||+|||||+|+|.+.+....+.. .+++....+..+ +-..+.+.++||+|..+.. ....
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI-~GTTRDviee~i-~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI-AGTTRDVIEEDI-NLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCC-CCCccceEEEEE-EECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 34568999999999999999999999876554443 233332333322 1222789999999954322 2223
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
..++++|.++||+|.+.+.+-.... .+. ....+.|+++|.||.|+......... + ...+.+++.+|++++
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~---~--~~~~~~~i~iSa~t~ 361 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELESE---K--LANGDAIISISAKTG 361 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccchh---h--ccCCCceEEEEecCc
Confidence 4578899999999999862222221 111 23567889999999999765442111 1 112446899999999
Q ss_pred CCHHHHHHHHHHhhcc
Q 028986 182 DNINQLFEVLITCTSS 197 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~~ 197 (200)
.|++.+.+.|.+.+..
T Consensus 362 ~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 362 EGLDALREAIKQLFGK 377 (454)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887654
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=6.8e-18 Score=138.21 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=101.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----cccceeEEEEEEEec-CCcE-----E-----EEEEEeCCChhh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTIALQ-DSTT-----V-----KFEIWDTAGQER 95 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-----~-----~~~l~D~~g~~~ 95 (200)
.+...|+|+|++++|||||+++|.+........ ++.+..+........ .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 345579999999999999999998754322221 122222211111000 0110 1 268999999999
Q ss_pred hhhcccccccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC----C--------HH
Q 028986 96 YAALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV----P--------AQ 160 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~----~--------~~ 160 (200)
+...+...+..+|++++|+|+++ +.+++.+. .+. ..++|+++++||+|+...... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888899999999999997 45554433 222 237889999999998521110 0 00
Q ss_pred -----------HHHHHHHH---------------cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 161 -----------DGIEYAEK---------------NGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 161 -----------~~~~~~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
+....... ..++++++|+++|.|++++++.+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00011111 135799999999999999998887544
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=7.3e-18 Score=138.02 Aligned_cols=160 Identities=15% Similarity=0.209 Sum_probs=110.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc--CCCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR--GQFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
--+|+|+|+.++|||||+++|+. +.+.... ....+.+.......+... .+++.+|||||+..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-DYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-CEEEEEEECCCcchhHH
Confidence 34899999999999999999997 2222211 122334443443444333 37899999999999999
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHH-------cC
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEK-------NG 170 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~-------~~ 170 (200)
.+..+++.+|++++|+|+.+.... ....++..+.. .++|.++++||+|+...+.. ..+++..+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999875322 22333333333 36788999999998643221 12233333221 34
Q ss_pred CeEEEecCCCCC----------CHHHHHHHHHHhhcc
Q 028986 171 MFFIETSAKTAD----------NINQLFEVLITCTSS 197 (200)
Q Consensus 171 ~~~~~~S~~~~~----------~i~~~~~~i~~~~~~ 197 (200)
++++.+|+++|. ++..+++.|++.+..
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 679999999998 588999988887653
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.6e-17 Score=122.32 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=77.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC----------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS----------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
+|+++|+.|+|||||+++|+........ ....+.........+... ..++.+|||||+.++..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~-~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE-DTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC-CEEEEEEeCCCccchHH
Confidence 5899999999999999999864211000 001111111112222222 26899999999998888
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
.+..+++.+|++++|+|+.+.... ....++..+... ++|+++++||+|+.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 888899999999999999986433 334455555433 68899999999985
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=5.1e-18 Score=123.41 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=98.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------------ccccceeEE--EEEEEec--CCcEEEEEEEeCCCh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------------KVTVGASFL--SQTIALQ--DSTTVKFEIWDTAGQ 93 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~--~~~~~~~~l~D~~g~ 93 (200)
+|+|+|+.++|||||+++|+........ ....+.... ...+.+. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 000111111 1111111 344588999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-CCH-----------HH
Q 028986 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VPA-----------QD 161 (200)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-~~~-----------~~ 161 (200)
.++...+..++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+...+. ... ++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 9888888888999999999999987654432 334443332 3588999999999752110 001 11
Q ss_pred HHHHHHHcC-------Ce----EEEecCCCCCCHH--------HHHHHHHHhh
Q 028986 162 GIEYAEKNG-------MF----FIETSAKTADNIN--------QLFEVLITCT 195 (200)
Q Consensus 162 ~~~~~~~~~-------~~----~~~~S~~~~~~i~--------~~~~~i~~~~ 195 (200)
+..++.... .| +++.|++.++.+. ++++.|.+.+
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 222332232 22 6789999998776 5666655543
No 219
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=115.91 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=110.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhhcc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAALA 100 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 100 (200)
+...-|+++|.++||||||||+|++.+.......++|-+....-+.+.+ .+.++|.|| .+.+....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 4555799999999999999999999775455556666666555555544 388999999 34556666
Q ss_pred cccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc----CCe-
Q 028986 101 PLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN----GMF- 172 (200)
Q Consensus 101 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~- 172 (200)
..|++. -.++++++|+..+-...+ ..+++.+. ..++|+++++||+|.....+.. ......++.. ...
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~---~~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLL---ELGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHH---HcCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccc
Confidence 666643 468899999987633322 23334444 3488999999999987653322 1122333222 222
Q ss_pred -EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 173 -FIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 173 -~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++..|+..+.|++++...|.+.+.+.
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhcc
Confidence 78889999999999999999887653
No 220
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=2e-17 Score=121.47 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=107.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh------------
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE------------ 94 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------------ 94 (200)
..+..+.++|+|+|.|++|||||.|.+.+.+..+.+....++.....-+ +..+. .++.++||||.-
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGE-TQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCc-eEEEEecCCcccccchhhhHHHHH
Confidence 3455788999999999999999999999998877666544444333222 22333 689999999921
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-------------CC---
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-------------VP--- 158 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-------------~~--- 158 (200)
.........+..+|.+++++|+++....-. ...+..+... ..+|-++|.||.|....+. +.
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k 220 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK 220 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence 011122345677999999999996321110 1223333332 2677899999999854321 11
Q ss_pred HHHHHHHHHH---------cCC----eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 159 AQDGIEYAEK---------NGM----FFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 159 ~~~~~~~~~~---------~~~----~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.+...++... .++ .+|.+||+.|+|++++.++|+.++..
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 1111111110 112 28999999999999999999988764
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=4e-17 Score=128.76 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=104.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCC----------C--CC--CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF----------D--PT--SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
..++.++|+++|+.++|||||+++|++... . .. .....+.+.......+... ..++.++||||++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~-~~~i~~iDtPGh~ 86 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA-NRHYAHVDCPGHA 86 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-CcEEEEEECCCHH
Confidence 456789999999999999999999986210 0 00 0011122222222223222 2578999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCcC---CHHHHHHHHHHcC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREV---PAQDGIEYAEKNG 170 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~~ 170 (200)
++.......+..+|++++|+|+..... .....++..+.. .++|.+ +++||+|+....+. ..+++..+...++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 887777777888999999999987422 222233333332 356755 57999998643221 1224445555442
Q ss_pred -----CeEEEecCCCCC----------CHHHHHHHHHHhh
Q 028986 171 -----MFFIETSAKTAD----------NINQLFEVLITCT 195 (200)
Q Consensus 171 -----~~~~~~S~~~~~----------~i~~~~~~i~~~~ 195 (200)
++++++|+.++. ++.++++.|.+.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 6788888887754
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.6e-17 Score=128.96 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=104.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC--------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP--------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
.++.++|+++|+.++|||||+++|++..... ......+.+.......+... ..++.++|+||+++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~-~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE-KRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-CcEEEEEECCCHHH
Confidence 5678999999999999999999998631100 00011122222222333222 25789999999998
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCC---HHHHHHHHHHcC-
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVP---AQDGIEYAEKNG- 170 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~- 170 (200)
|.......+..+|++++|+|+.....-. ....+..+... ++| +++++||+|+....+.. .+++..+....+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8777767778899999999998642211 22333333333 567 67889999986432221 124444444443
Q ss_pred ----CeEEEecCCCCC--------CHHHHHHHHHHhhc
Q 028986 171 ----MFFIETSAKTAD--------NINQLFEVLITCTS 196 (200)
Q Consensus 171 ----~~~~~~S~~~~~--------~i~~~~~~i~~~~~ 196 (200)
++++++|++++. ++.++++.|.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 67888888877653
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=8.6e-18 Score=122.67 Aligned_cols=148 Identities=20% Similarity=0.135 Sum_probs=89.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCC---------------------------Cc--cccceeEEEEEEEecCCcEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT---------------------------SK--VTVGASFLSQTIALQDSTTVKF 85 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~---------------------------~~--~~~~~~~~~~~~~~~~~~~~~~ 85 (200)
+|+++|+.++|||||+.+|+....... .. ...+.+.......+.. ...++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 589999999999999999974211000 00 0011111111112211 22689
Q ss_pred EEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh------HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC--cC
Q 028986 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS------FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR--EV 157 (200)
Q Consensus 86 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~--~~ 157 (200)
.+||+||+..+...+...+..+|++++|+|+++... .......+...... ...|+++++||+|+.... ..
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHH
Confidence 999999998877777777888999999999997421 11122222222222 236799999999987321 11
Q ss_pred C----HHHHHHHHHHc-----CCeEEEecCCCCCCHH
Q 028986 158 P----AQDGIEYAEKN-----GMFFIETSAKTADNIN 185 (200)
Q Consensus 158 ~----~~~~~~~~~~~-----~~~~~~~S~~~~~~i~ 185 (200)
. .+++..+.... +++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 11222233333 3679999999999986
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=2.6e-17 Score=118.30 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=95.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhhhh-----cccccccC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERYAA-----LAPLYYRG 106 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~ 106 (200)
+++|+++|.+|+|||||+|+|++...........+. ........+.......+.+||+||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 478999999999999999999986543322222221 111111111111123689999999632111 11223567
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-----------CCHHHHHHHHH----HcC-
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-----------VPAQDGIEYAE----KNG- 170 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~- 170 (200)
+|+++++.+.. . -..-..|+..+... +.|+++|+||+|+....+ ...+++.+.+. ..+
T Consensus 81 ~d~~l~v~~~~-~--~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISSTR-F--SSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeCCC-C--CHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 89998885432 1 12224455555554 578999999999853211 11112222222 112
Q ss_pred --CeEEEecCC--CCCCHHHHHHHHHHhhccc
Q 028986 171 --MFFIETSAK--TADNINQLFEVLITCTSSY 198 (200)
Q Consensus 171 --~~~~~~S~~--~~~~i~~~~~~i~~~~~~~ 198 (200)
-++|.+|+. .+.++..+.+.|+..+.+.
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 258999998 6799999999999988753
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.1e-17 Score=131.10 Aligned_cols=156 Identities=21% Similarity=0.219 Sum_probs=107.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccc-c-
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLY-Y- 104 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~-~- 104 (200)
..+|+++|+||+|||||+|+|++....--.-+ +.+...++-.+.... .+++++|.||..... .....| +
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~-~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKG-HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecC-ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 45699999999999999999999654322222 333333443332222 469999999942221 122222 2
Q ss_pred cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
...|+++-|+|+++-+-- -++.-++. .-+.|++++.|+.|..+.+-+..+ .+++.+.+++|+++++|++|+|+
T Consensus 80 ~~~D~ivnVvDAtnLeRn---LyltlQLl---E~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERN---LYLTLQLL---ELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHH---HHHHHHHH---HcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCH
Confidence 457999999999986311 12222233 337889999999998766554433 36777789999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
+++.+.+.+...+.
T Consensus 153 ~~l~~~i~~~~~~~ 166 (653)
T COG0370 153 EELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHHhcccc
Confidence 99999998766543
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.74 E-value=9.2e-17 Score=117.23 Aligned_cols=155 Identities=16% Similarity=0.183 Sum_probs=95.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccc-----------------------cceeEEEEEE------------EecC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-----------------------VGASFLSQTI------------ALQD 79 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~------------~~~~ 79 (200)
||+++|+.++|||||+++|....+.+..... .+.+.....+ ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976553211100 0000000000 0001
Q ss_pred CcEEEEEEEeCCChhhhhhcccccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986 80 STTVKFEIWDTAGQERYAALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (200)
Q Consensus 80 ~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~ 157 (200)
.....+.++|+||++.+.......+ ..+|++++|+|+..+.. .....++..+... ++|+++|+||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 1125789999999988765544444 36899999999986532 2223344444433 5789999999998543221
Q ss_pred C--HHHHHHHHH--------------------------HcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 158 P--AQDGIEYAE--------------------------KNGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 158 ~--~~~~~~~~~--------------------------~~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
. .+++.++.. ...++++.+|+.+|.|++++++.|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 111122221 01238999999999999999887653
No 227
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=8e-17 Score=127.11 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=99.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCC-------------CC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------------DP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
..++.++|+++|+.++|||||+++|++... +. ......+.+.....+.+.. ...++.+|||||++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~ 86 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA 86 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchH
Confidence 346789999999999999999999974210 00 0001112222222333333 23678999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKADLHEKREVP---AQDGIEYAEKNG 170 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~~~~~~~ 170 (200)
+|..........+|++++|+|+....... ....+..+... ++|. ++++||+|+....+.. .+++.+++..++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 88766666677899999999998742111 12233333322 5665 4689999986533211 234555665554
Q ss_pred -----CeEEEecCCCCC--------CHHHHHHHHHH
Q 028986 171 -----MFFIETSAKTAD--------NINQLFEVLIT 193 (200)
Q Consensus 171 -----~~~~~~S~~~~~--------~i~~~~~~i~~ 193 (200)
++++++|+.++. ++.++++.|.+
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 689999999874 34455555544
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=118.92 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=103.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh-----hhhhh----cccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ-----ERYAA----LAPL 102 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~----~~~~ 102 (200)
....|+|.|+||||||||++++++.+......|..+-.. .+........+++++||||. ++.+. ....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i---~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGI---HVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccce---eEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 456799999999999999999999765544333222222 22222333368999999993 12211 1111
Q ss_pred cccCccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCC
Q 028986 103 YYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAK 179 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~ 179 (200)
.-.-.++++|++|++.. -+.+....++..+...-. .|+++|+||.|....... +++......-+ .....+++.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence 12236899999999964 466777888888877643 899999999998654432 23333333333 347788899
Q ss_pred CCCCHHHHHHHHHHh
Q 028986 180 TADNINQLFEVLITC 194 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~ 194 (200)
.+.+++.+...+...
T Consensus 320 ~~~~~d~~~~~v~~~ 334 (346)
T COG1084 320 KGCGLDKLREEVRKT 334 (346)
T ss_pred ehhhHHHHHHHHHHH
Confidence 999888777776665
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=2.1e-16 Score=118.77 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=89.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC----------ccccceeEEEEEEEecCCcEEEEEEEeCCChhh------
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER------ 95 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------ 95 (200)
..++|+++|.+|+|||||+|+|++..+.... .++.........+. .++..+++.+|||||...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchh
Confidence 4689999999999999999999998764331 22223333333333 245568899999999211
Q ss_pred --------------------hhhccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 96 --------------------YAALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 96 --------------------~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
....+...+. .+|+++|+++.+...-...-..++..+. . .+|+++|+||+|+..
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 1111112333 4788888888775211111122333332 2 688999999999865
Q ss_pred CC--cCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 154 KR--EVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 154 ~~--~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
.. ......+.+.+..++++++......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 32 2234555667777888888776543
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=6.8e-17 Score=117.47 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=77.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCc----------------cccceeEEEEEEEec-------CCcEEEEEEEeCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSK----------------VTVGASFLSQTIALQ-------DSTTVKFEIWDTA 91 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~-------~~~~~~~~l~D~~ 91 (200)
+|+|+|+.++|||||+.+|+......... .............+. ++..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999998643110000 000111111112222 2335789999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
|+.++......+++.+|++++|+|+..+.+... ...+.... ..++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcc
Confidence 999999888999999999999999998654433 22222222 2357899999999985
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=2.3e-16 Score=124.97 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=95.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC--------------CccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT--------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
.+..++|+++|++++|||||+++|++...... .....+.+.......+... ..++.++||||+.+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE-NRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-CeEEEEEECCChHH
Confidence 46679999999999999999999997421100 0011122222222223222 25789999999988
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC-
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG- 170 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~- 170 (200)
+.......+..+|++++|+|+..... ......+..+... ++| +++++||+|+....+. ..+++..+....+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87777777888999999999986522 2223333333333 567 7788999998653321 1124444444433
Q ss_pred ----CeEEEecCCCCCC
Q 028986 171 ----MFFIETSAKTADN 183 (200)
Q Consensus 171 ----~~~~~~S~~~~~~ 183 (200)
++++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 6899999998863
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=2.9e-16 Score=117.50 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=76.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--------------------ccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--------------------TVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
+|+|+|++|+|||||+++|+.......... ..+.........+... .+++.+|||||+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~-~~~i~liDTPG~~ 82 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR-DCVINLLDTPGHE 82 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC-CEEEEEEECCCch
Confidence 699999999999999999985321100000 0011111222223222 3789999999998
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
++.......++.+|++++|+|+++.... ....++.... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 8877677778899999999999875322 2233333333 236889999999997554
No 233
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.73 E-value=5.1e-17 Score=118.12 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=99.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----cccccccCccE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----LAPLYYRGAAV 109 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~ 109 (200)
||+++|+++|||||+.+.++.+-. +......+.+.......+.....+.+.+||.||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999888887532 222222233322222223222336899999999864433 34667899999
Q ss_pred EEEEEeCCCHHhHHHH---HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC------CHHHHHHHHHHcC---CeEEEec
Q 028986 110 AVVVYDITSPDSFNKA---QYWVKELQKHGSPDIVMALVGNKADLHEKREV------PAQDGIEYAEKNG---MFFIETS 177 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~S 177 (200)
+|||+|+.+.+-.+.+ ...+..+.+. .+++.+.+++.|+|+..+... ..+.+.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999999954433444 4444445555 678999999999998654211 1122223333445 7799999
Q ss_pred CCCCCCHHHHHHHHHHhhccc
Q 028986 178 AKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~~~~ 198 (200)
..+ ..+-+.|..+++.+...
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTT
T ss_pred CcC-cHHHHHHHHHHHHHccc
Confidence 998 58999999999887643
No 234
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=3.4e-17 Score=118.96 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=110.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-------hhhhcccc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-------RYAALAPL 102 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~~~~~~~ 102 (200)
.+.+++|+++|.+|+|||||||+|+.+...+...-..+.+.....+...++. .+.+||+||-+ ++......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence 5678899999999999999999999766555443333333323223333333 68999999943 36677777
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-------cCCHHHHHHHHHH-------
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-------EVPAQDGIEYAEK------- 168 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~~~~~~------- 168 (200)
++...|.+++++++.++.---. .+++..+... ..+.++++++|.+|....- ......++++..+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCC-HHHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8889999999999999852222 3444554443 3347899999999985431 1111111222111
Q ss_pred -c--CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 169 -N--GMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 169 -~--~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
. --|++..+.+.++|++++...+++.+..
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1 2268888899999999999999988764
No 235
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8e-16 Score=114.11 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=110.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhccccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLY 103 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~ 103 (200)
.--.+++++|+|++|||||++.|++-+......+..+....+-.+.+.+ .++++.|+||.-+- ....-..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g---a~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG---AQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC---ceEEEEcCcccccCcccCCCCcceeeee
Confidence 4455799999999999999999999766554444444444444455533 68999999984211 1334556
Q ss_pred ccCccEEEEEEeCCCHHh-HHHHHHHHHH-----------------------------------------HHH-------
Q 028986 104 YRGAAVAVVVYDITSPDS-FNKAQYWVKE-----------------------------------------LQK------- 134 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------i~~------- 134 (200)
.++||++++|+|+..... .+.+...+.. +.+
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 889999999999996544 5555444440 000
Q ss_pred -----------------cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 135 -----------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 135 -----------------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.....+|.++|.||.|+.. .++...+.+.. .++.+|++.+.|++++.+.|.+.+.
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 1233689999999999755 33444544444 6899999999999999999988764
No 236
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=3.7e-16 Score=115.41 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=105.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 107 (200)
.|.++|.|++|||||+++|.+.+-..-....++.....-++.+.+.. .+.+-|.||.-+ ...+-..| +..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~--q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS--QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc--eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 56799999999999999999976432222222222222344444433 489999999421 11122222 4568
Q ss_pred cEEEEEEeCCCH---HhHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986 108 AVAVVVYDITSP---DSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTA 181 (200)
Q Consensus 108 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 181 (200)
+.++||+|++.. ..++.++.+..++..+ ...+.|.++|+||+|+.+.+ ...+.++++...- .++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999987 6677776666665443 25578899999999985322 2224566666544 4999999999
Q ss_pred CCHHHHHHHHHHh
Q 028986 182 DNINQLFEVLITC 194 (200)
Q Consensus 182 ~~i~~~~~~i~~~ 194 (200)
+++.+++..|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999887654
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=1.1e-15 Score=120.67 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=103.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC---C-----------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---P-----------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
.+..++|+++|+.++|||||+++|++.... . ......+.+.......+... ..++.++||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE-KRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-CeEEEEEECCCHHH
Confidence 467889999999999999999999873110 0 00011222222222333222 25789999999988
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCcCC---HHHHHHHHHHc--
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREVP---AQDGIEYAEKN-- 169 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~-- 169 (200)
+.......+..+|++++|+|+..... .....++..+... ++|.+ +++||+|+....+.. ..++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 87777777889999999999987522 2223344444433 56765 579999986432211 12333344332
Q ss_pred ---CCeEEEecCCCCC----------CHHHHHHHHHHhh
Q 028986 170 ---GMFFIETSAKTAD----------NINQLFEVLITCT 195 (200)
Q Consensus 170 ---~~~~~~~S~~~~~----------~i~~~~~~i~~~~ 195 (200)
+++++++|++++. ++.++++.|.+.+
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3689999999875 5677887777654
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=5.5e-16 Score=124.16 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=95.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCC------CC--------CCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF------DP--------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
..+..++|+++|+.++|||||+++|+.... .. ......+.+.......+.. ...++.++|+||++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~ 155 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA 155 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH
Confidence 356788999999999999999999996211 00 0011112222111222222 22578999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCC---HHHHHHHHHHc-
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVP---AQDGIEYAEKN- 169 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~- 169 (200)
+|.......+..+|++++|+|+.....-. ...++..+... ++| +++++||+|+....+.. .+++..+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98877777778899999999998753222 23333434333 566 77899999986532211 12334444443
Q ss_pred ----CCeEEEecCCCCC
Q 028986 170 ----GMFFIETSAKTAD 182 (200)
Q Consensus 170 ----~~~~~~~S~~~~~ 182 (200)
+++++++|+.++.
T Consensus 232 ~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 232 FPGDDIPIISGSALLAL 248 (478)
T ss_pred CCcCcceEEEEEccccc
Confidence 5679999998874
No 239
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.8e-16 Score=122.64 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=117.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCC--CCC-----------CccccceeEE--EEEEEecCCcEEEEEEEeCCChhh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF--DPT-----------SKVTVGASFL--SQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
++.=|+.|+.+-.=|||||..+|+...- +++ ....-+.+.. ...+.+.++..+.+.++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4555899999999999999999986432 110 0011122222 223444557778999999999999
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCeEE
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFI 174 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~ 174 (200)
|.....+.+.-||++|+|+|+++.-.-+.+..++..+ ..+..+|.|+||+|+...+.. ...++.++......+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 9999999999999999999999875555555555554 335669999999999765321 12233333334455799
Q ss_pred EecCCCCCCHHHHHHHHHHhhc
Q 028986 175 ETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.+||++|.++.++++.|++.+.
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCC
Confidence 9999999999999999999875
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.3e-15 Score=121.39 Aligned_cols=165 Identities=12% Similarity=0.111 Sum_probs=100.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcC------CCCCC--------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRG------QFDPT--------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
....+..++|+++|+.++|||||+++|.+. ..... .....+.+.......+.... .++.++||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~~iDtPG 133 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK-RHYAHVDCPG 133 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC-eEEEEEECCC
Confidence 345577899999999999999999999731 10000 00111222222223333322 5789999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCCH---HHHHHHHHH
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPA---QDGIEYAEK 168 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~---~~~~~~~~~ 168 (200)
+..+..........+|++++|+|+..... ......+..+... ++| +++++||+|+....+... +++.++...
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 98776666566677999999999986532 2223333334333 577 578899999865322111 122233322
Q ss_pred c-----CCeEEEecCC---CCCC-------HHHHHHHHHHhhc
Q 028986 169 N-----GMFFIETSAK---TADN-------INQLFEVLITCTS 196 (200)
Q Consensus 169 ~-----~~~~~~~S~~---~~~~-------i~~~~~~i~~~~~ 196 (200)
. .++++++|+. ++.| +.++++.|.+.+.
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2 3678888875 4444 7788888877653
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=1.1e-15 Score=121.91 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------------------CccccceeEEEEEEEecCC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----------------------------SKVTVGASFLSQTIALQDS 80 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 80 (200)
.+..++|+++|+.++|||||+-+|+...-... .....+.+.......+ ..
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~-~~ 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF-ET 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe-cC
Confidence 46678999999999999999998875211000 0000111111111222 22
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHH-------HHHHHHHHHHHcCCCCC-eEEEEEeCCCCC
Q 028986 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN-------KAQYWVKELQKHGSPDI-VMALVGNKADLH 152 (200)
Q Consensus 81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~ 152 (200)
....+.++|+||+++|.......+..+|++|+|+|+.+. .++ .....+..+. ..++ ++++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCC
Confidence 336899999999999999888889999999999999873 121 2233323332 2355 478889999975
Q ss_pred CCC--c----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 028986 153 EKR--E----VPAQDGIEYAEKNG-----MFFIETSAKTADNIN 185 (200)
Q Consensus 153 ~~~--~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~ 185 (200)
... . ...+++..++...+ ++++++|+.+|.|+.
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 211 0 11345556666555 679999999999985
No 242
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.3e-15 Score=118.57 Aligned_cols=158 Identities=15% Similarity=0.223 Sum_probs=114.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
...-|+|+|+-.-|||||+..+-.......-.-.++.+.....+.........+.++|||||+.|..++..-.+-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999998876655444445555555555554222246999999999999999999899999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC---------CeEEEecCCCCC
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG---------MFFIETSAKTAD 182 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 182 (200)
+|+++++.---+. .+.+......++|+++.+||+|..+.+ .+....-..+++ ..++++||++|.
T Consensus 84 LVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998521111 122333335589999999999987432 222233233332 369999999999
Q ss_pred CHHHHHHHHHHhhc
Q 028986 183 NINQLFEVLITCTS 196 (200)
Q Consensus 183 ~i~~~~~~i~~~~~ 196 (200)
|+++++..|+-+.+
T Consensus 157 Gi~eLL~~ill~ae 170 (509)
T COG0532 157 GIDELLELILLLAE 170 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999876654
No 243
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.69 E-value=2.1e-15 Score=108.31 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=96.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----------hhcc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-----------AALA 100 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~ 100 (200)
++|+++|.+|+|||||+|.+++........ ...+.......... ++ .++.++||||..+. ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 479999999999999999999976432221 11111111122222 22 47999999994321 1112
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcC------CHHHHHHHHHHcCCe
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREV------PAQDGIEYAEKNGMF 172 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~ 172 (200)
.......|++++|+++... +- .....++.+.+... .-.++++|+|+.|....... .....+.+.+.++-.
T Consensus 78 ~~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred HhcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 2234678999999998872 22 22333444443321 12468899999997553211 113445555565655
Q ss_pred EEEec-----CCCCCCHHHHHHHHHHhhcc
Q 028986 173 FIETS-----AKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 173 ~~~~S-----~~~~~~i~~~~~~i~~~~~~ 197 (200)
++..+ +..+.++.++++.|.+.+.+
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 55544 44578899999999988876
No 244
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=5.7e-16 Score=116.02 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=75.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC------------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDP------------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 96 (200)
+|+|+|++++|||||+++|+...... ..............+.. . ..++.+|||||+..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~-~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--K-DHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--C-CEEEEEEECCCcHHH
Confidence 58999999999999999997521110 00111111111122222 2 268999999999888
Q ss_pred hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
...+...++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+..
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8888889999999999999987532221 233344433 3678999999999864
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=3.5e-16 Score=125.68 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=94.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------c--------------------cccceeEEEEEE
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------------K--------------------VTVGASFLSQTI 75 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------~--------------------~~~~~~~~~~~~ 75 (200)
..+..++|+|+|+.++|||||+.+|+........ . .....+....
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~-- 100 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR-- 100 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE--
Confidence 4567799999999999999999999864321110 0 0001111111
Q ss_pred EecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 76 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 76 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
.+ .....++.++||||++.+.......+..+|++++|+|+.....-.... .+..+.... ..|+++++||+|+....
T Consensus 101 ~~-~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~l~~~lg--~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 101 YF-STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSFIATLLG--IKHLVVAVNKMDLVDYS 176 (474)
T ss_pred Ee-ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHHHHHHhC--CCceEEEEEeeccccch
Confidence 12 122257899999999888765555678999999999998652111111 111222221 24688999999986432
Q ss_pred cCCHHHHH----HHHHHc----CCeEEEecCCCCCCHHHH
Q 028986 156 EVPAQDGI----EYAEKN----GMFFIETSAKTADNINQL 187 (200)
Q Consensus 156 ~~~~~~~~----~~~~~~----~~~~~~~S~~~~~~i~~~ 187 (200)
+...+++. .+.... .++++++|+++|.|+.+.
T Consensus 177 ~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 21122222 222332 367999999999998764
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.3e-16 Score=119.91 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=87.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCcc------------------ccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKV------------------TVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 96 (200)
+|+++|++|+|||||+++|+.......... ..........+.. ...++.+|||||+..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~---~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW---KGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE---CCEEEEEEECcCHHHH
Confidence 589999999999999999986321110000 0001111112222 2268999999999888
Q ss_pred hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeE--E
Q 028986 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFF--I 174 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~ 174 (200)
...+..++..+|++++|+|+++........ .+..+. ..++|.++++||+|+.... ..+....+...++.++ +
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEE
Confidence 878888899999999999999864443322 223333 3368899999999986542 1233334434445443 3
Q ss_pred EecCCCCCCHH
Q 028986 175 ETSAKTADNIN 185 (200)
Q Consensus 175 ~~S~~~~~~i~ 185 (200)
.+..+++.++.
T Consensus 152 ~ip~~~~~~~~ 162 (268)
T cd04170 152 QLPIGEGDDFK 162 (268)
T ss_pred EecccCCCcee
Confidence 44455554443
No 247
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=113.42 Aligned_cols=161 Identities=19% Similarity=0.129 Sum_probs=103.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCcc
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGAA 108 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~d 108 (200)
|.++|.|++|||||++.+...+-..-.++..+.....-.+..... -.+.+-|+||.-+ -..+-..| +..+.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~--~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG--ESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC--CcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 459999999999999999987644333333333322333333222 3689999999321 11122222 34588
Q ss_pred EEEEEEeCCCHH---hHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEE-EecCCCCC
Q 028986 109 VAVVVYDITSPD---SFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFI-ETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~S~~~~~ 182 (200)
+++.|+|++..+ ..+.......++..+. ..+.|.++|+||+|+....+...+....+.+..+...+ ++|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999999543 2444444445554432 45788999999999766544434444444444454422 29999999
Q ss_pred CHHHHHHHHHHhhccc
Q 028986 183 NINQLFEVLITCTSSY 198 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~ 198 (200)
|++++...+.+.+.+.
T Consensus 320 g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 320 GLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998887764
No 248
>PRK09866 hypothetical protein; Provisional
Probab=99.68 E-value=4.9e-15 Score=119.66 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=72.9
Q ss_pred EEEEEeCCChhh-----hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC
Q 028986 84 KFEIWDTAGQER-----YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP 158 (200)
Q Consensus 84 ~~~l~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~ 158 (200)
++.++||||... ........+..+|+++||+|+....+... ..+.+.+... ....|+++|+||+|+.......
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 678999999532 22333446889999999999987432222 2344445443 2235899999999986433323
Q ss_pred HHHHHHHHHH----c---CCeEEEecCCCCCCHHHHHHHHHH
Q 028986 159 AQDGIEYAEK----N---GMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 159 ~~~~~~~~~~----~---~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
.+.+..+... . ...++++||+.|.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 4444554322 1 235999999999999999999876
No 249
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.68 E-value=1.6e-16 Score=110.94 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=72.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc---cccCccE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL---YYRGAAV 109 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~ 109 (200)
.-.|+++|+.|+|||+|+..|..+...+...+. ..... ..+.......+.++|+||+++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 346999999999999999999998654444332 22221 1122222247899999999877653333 4778999
Q ss_pred EEEEEeCCC-HHhHHHH-HHHHHHHHHc--CCCCCeEEEEEeCCCCCCC
Q 028986 110 AVVVYDITS-PDSFNKA-QYWVKELQKH--GSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 110 ~i~v~d~~~-~~s~~~~-~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~ 154 (200)
+|||+|.+. ......+ +.++..+... ....+|++|++||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999985 3344444 4444444332 2568999999999999764
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=2.6e-15 Score=98.91 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=66.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhhccccc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAALAPLY 103 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 103 (200)
+|+|+|.+|+|||||+|+|++....... .+..........+.+.+ ..+.++||||... .......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~---~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~- 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN---KKFILVDTPGINDGESQDNDGKEIRKFLEQ- 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT---EEEEEEESSSCSSSSHHHHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece---eeEEEEeCCCCcccchhhHHHHHHHHHHHH-
Confidence 6899999999999999999985432211 11122222223333322 4568999999421 1123333
Q ss_pred ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 148 (200)
+..+|++++|+|.+++.. +....++..++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 388999999999887422 23334444442 57899999998
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=7.8e-16 Score=121.78 Aligned_cols=149 Identities=23% Similarity=0.204 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------cc------------------ccceeEEEEEEEecCCcE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------------KV------------------TVGASFLSQTIALQDSTT 82 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~ 82 (200)
++|+|+|+.++|||||+.+|+........ .. ..+.+.......+.. ..
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 58999999999999999999753211100 00 000111111111212 22
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH---
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--- 159 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~--- 159 (200)
.++.++||||++.+.......+..+|++++|+|+.....-.. ...+..+.... ..++++++||+|+........
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 589999999999887666677889999999999986532111 11222222221 235889999999864322111
Q ss_pred -HHHHHHHHHcC---CeEEEecCCCCCCHHH
Q 028986 160 -QDGIEYAEKNG---MFFIETSAKTADNINQ 186 (200)
Q Consensus 160 -~~~~~~~~~~~---~~~~~~S~~~~~~i~~ 186 (200)
++...+....+ ++++++|+++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22222333333 4699999999999875
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=1.6e-15 Score=121.09 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=95.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCC--CC-------------------------C--CccccceeEEEEEEEecCC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DP-------------------------T--SKVTVGASFLSQTIALQDS 80 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~-------------------------~--~~~~~~~~~~~~~~~~~~~ 80 (200)
.++.++|+++|+.++|||||+.+|+...- .. . .....+.+.......+ ..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~-~~ 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-ET 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE-cc
Confidence 46678999999999999999999976211 00 0 0001111111111222 22
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---H---HHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCC
Q 028986 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIV-MALVGNKADLHE 153 (200)
Q Consensus 81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~ 153 (200)
....+.++|+||+.+|.......+..+|++++|+|+..... + ......+..+.. .++| +++++||+|...
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 33689999999999998888888899999999999987521 1 122223333333 2555 678999999532
Q ss_pred --CCcCCH----HHHHHHHHHc-----CCeEEEecCCCCCCHHH
Q 028986 154 --KREVPA----QDGIEYAEKN-----GMFFIETSAKTADNINQ 186 (200)
Q Consensus 154 --~~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 186 (200)
..+... +++..+.... +++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111112 2333333332 36799999999999863
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.66 E-value=2.8e-15 Score=114.32 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=95.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC------CCccccceeEEEEE---------------EEecCCcEEEEEEEeCCCh-
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDP------TSKVTVGASFLSQT---------------IALQDSTTVKFEIWDTAGQ- 93 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~D~~g~- 93 (200)
|+++|.|+||||||+|+|++..... ...++.+..+.... ........+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999976431 11222222221110 0011123368999999996
Q ss_pred ---hhhhhcccc---cccCccEEEEEEeCCC---------------H-HhHHHH----HHH-HHH---------------
Q 028986 94 ---ERYAALAPL---YYRGAAVAVVVYDITS---------------P-DSFNKA----QYW-VKE--------------- 131 (200)
Q Consensus 94 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~----~~~-~~~--------------- 131 (200)
++...+... .++++|++++|+|++. + +.++.+ ..| +..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334443334 4889999999999973 1 112111 111 000
Q ss_pred -------------------------HHHc---------------------CCCCCeEEEEEeCCCCCCCCcCCHHHHHHH
Q 028986 132 -------------------------LQKH---------------------GSPDIVMALVGNKADLHEKREVPAQDGIEY 165 (200)
Q Consensus 132 -------------------------i~~~---------------------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~ 165 (200)
+.+. .....|+++|+||.|+....+ ....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~----~~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN----NISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH----HHHHH
Confidence 0000 022479999999999743322 11122
Q ss_pred HHHc-CCeEEEecCCCCCCHHHHHH-HHHHhhcc
Q 028986 166 AEKN-GMFFIETSAKTADNINQLFE-VLITCTSS 197 (200)
Q Consensus 166 ~~~~-~~~~~~~S~~~~~~i~~~~~-~i~~~~~~ 197 (200)
.... ...++.+||+.+.++.++.+ .+.+.+.+
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 2222 45799999999999999997 58888754
No 254
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.65 E-value=1.9e-14 Score=106.83 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=124.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC-cEEEEEEEeCCChhhhhhcccccccCc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-TTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
+-..--+|+|+|..++||||||.+|.+.+ ...+..+..|.+..+...+. ...++.+|-..|......+..+.+...
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 33445589999999999999999999954 45566777777777665443 336788999999877666666665543
Q ss_pred ----cEEEEEEeCCCHH-hHHHHHHHHHHHHHc-----------------------------------------------
Q 028986 108 ----AVAVVVYDITSPD-SFNKAQYWVKELQKH----------------------------------------------- 135 (200)
Q Consensus 108 ----d~~i~v~d~~~~~-s~~~~~~~~~~i~~~----------------------------------------------- 135 (200)
..+|++.|++++. -++.+++|...+.++
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 3789999999994 447888888755442
Q ss_pred --------------CCCCCeEEEEEeCCCCC----CCCcCC-------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 136 --------------GSPDIVMALVGNKADLH----EKREVP-------AQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 136 --------------~~~~~p~iiv~nK~D~~----~~~~~~-------~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
.+.++|+++|++|+|.. ...+.. ...+++||..+|..++++|+++..|++-++.+
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 12368999999999983 222222 23456788899999999999999999999999
Q ss_pred HHHhh
Q 028986 191 LITCT 195 (200)
Q Consensus 191 i~~~~ 195 (200)
|.+..
T Consensus 285 ivhr~ 289 (473)
T KOG3905|consen 285 IVHRS 289 (473)
T ss_pred HHHHh
Confidence 98865
No 255
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=8e-15 Score=113.71 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=117.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCC-----------------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF-----------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
+--|..|+.+-.=|||||..+|+.... ......|+............++..+.++++|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 334788999999999999999976321 111222222223233334456777999999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM--- 171 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 171 (200)
++.-...+.+..|.+.++++|+++.-.-+.+...+..+. .+.-++.|+||+|+..... .....+.-.-.|+
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~ 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDAS 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcc
Confidence 888888888999999999999999866677777766663 3666999999999976533 2223333334555
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 172 FFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 172 ~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..+.+|||+|.|++++++.|++.+.
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCC
Confidence 3799999999999999999998875
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=5e-15 Score=123.31 Aligned_cols=154 Identities=21% Similarity=0.165 Sum_probs=93.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc------------cc-------------------cceeEEEEEEEe
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK------------VT-------------------VGASFLSQTIAL 77 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~------------~~-------------------~~~~~~~~~~~~ 77 (200)
.....++|+|+|++++|||||+++|+......... .+ .+.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44566899999999999999999998743211100 00 000000111111
Q ss_pred cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986 78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (200)
Q Consensus 78 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~ 157 (200)
.. ...++.++||||++.+.......+..+|++++|+|+.....-.. ...+..+.... ..++++++||+|+....+.
T Consensus 100 ~~-~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cc-CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhH
Confidence 11 22578899999998877666667889999999999976532111 11222222221 2568899999998642221
Q ss_pred CHH----HHHHHHHHcC---CeEEEecCCCCCCHHH
Q 028986 158 PAQ----DGIEYAEKNG---MFFIETSAKTADNINQ 186 (200)
Q Consensus 158 ~~~----~~~~~~~~~~---~~~~~~S~~~~~~i~~ 186 (200)
..+ ++.++....+ ++++++|+++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 2223333444 4699999999999874
No 257
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=1.5e-14 Score=121.72 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=79.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC--------------------CCccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP--------------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 91 (200)
...+|+|+|+.++|||||+++|+...... ....+.. .....+.. ...++.+||||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~---~~~~i~liDtP 81 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDW---DNHRINLIDTP 81 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEE---CCEEEEEEECC
Confidence 45699999999999999999998632100 0011111 11112222 23689999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
|+.++...+..+++.+|++++|+|+++.........| ..+. ..++|+++++||+|+..
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD---RYGIPRLIFINKMDRVG 139 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---hcCCCEEEEEECCCCCC
Confidence 9999888889999999999999999987655544333 3333 33688999999999863
No 258
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.63 E-value=8.5e-15 Score=116.68 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=105.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----CccccceeEEEEE----------E---EecCC----------
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----SKVTVGASFLSQT----------I---ALQDS---------- 80 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~----------~---~~~~~---------- 80 (200)
.+...++|.++|+-..|||||+.+|++...... ...|....+.... . .+..+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346778999999999999999999997432111 1111111111000 0 00000
Q ss_pred -----cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 81 -----TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 81 -----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
...++.++|+||++.+.......+..+|++++|+|+..+.........+..+.... -.++++++||+|+....
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence 01368999999999988777777888999999999987421122222233332221 23688999999986432
Q ss_pred cC--CHHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 156 EV--PAQDGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 156 ~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.. ..+++.++... .+.+++++|+++|.|++++++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 21 12233333322 3668999999999999999999987654
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.9e-14 Score=112.30 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=116.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.+.+.-|.|+|+-.=|||||+.+|-.......-.-.++.+.....+..+.|. .+++.||||+..|..++..-..-+|+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccE
Confidence 3466679999999999999999999876655444445555556666777664 79999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc---------CCeEEEecCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN---------GMFFIETSAKT 180 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~ 180 (200)
+++|+.+.+.---+ -.+.|......++|+++.+||+|..+.. .+...+-...+ ++.++++||++
T Consensus 228 vVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 99999998752111 2223444446689999999999976432 23333322222 34689999999
Q ss_pred CCCHHHHHHHHHHhh
Q 028986 181 ADNINQLFEVLITCT 195 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~ 195 (200)
|.|++.+-+.++-+.
T Consensus 301 g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 301 GENLDLLEEAILLLA 315 (683)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999988877654
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3e-15 Score=116.42 Aligned_cols=163 Identities=21% Similarity=0.207 Sum_probs=103.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hh--------hccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YA--------ALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~--------~~~~ 101 (200)
+..++|+|+|+||+|||||+|+|.+.+.....+ ..+++.......+. -..+++.+.||+|..+ .. ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEee-cCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 456899999999999999999999987655443 33444334443332 2226899999999543 11 1223
Q ss_pred ccccCccEEEEEEeCC--CHHhHHHHHHHHHHHHHcC------CCCCeEEEEEeCCCCCCC-CcCCHHHHHHHHH--Hc-
Q 028986 102 LYYRGAAVAVVVYDIT--SPDSFNKAQYWVKELQKHG------SPDIVMALVGNKADLHEK-REVPAQDGIEYAE--KN- 169 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~------~~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~--~~- 169 (200)
..+..+|++++|+|+. .-++...+...+....... ....|++++.||.|+... .+..... ..+.. ..
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCc
Confidence 4467899999999993 3333333333444332221 234789999999999665 1111100 11111 11
Q ss_pred CC-eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 170 GM-FFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 170 ~~-~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.. ...++|+++++++.++...|.+.+.
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 12 3566999999999999999888764
No 261
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.9e-15 Score=100.62 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=113.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.=|++++|--|+|||||++.|..+....+ .||.-. +.....+.+ ++++-+|.+|+-..+..|..++..+|+++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlHP--TSE~l~Ig~---m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP--TSEELSIGG---MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-CCCcCC--ChHHheecC---ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 445899999999999999999998764322 222222 122223322 68999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHH------HHHc--------C---CeE
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEY------AEKN--------G---MFF 173 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~--------~---~~~ 173 (200)
+.+|+.+.+-+.+.+..++.+.... -..+|+++.+||+|..... +.++.+-. +... + +.+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 9999999998988877777655432 4689999999999986653 33333321 1111 1 136
Q ss_pred EEecCCCCCCHHHHHHHHHHhh
Q 028986 174 IETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
+.||...+.+.-+.|.|+.+.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEEccCccceeeeehhhhc
Confidence 7889888888888888876654
No 262
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.60 E-value=7e-14 Score=111.28 Aligned_cols=163 Identities=20% Similarity=0.352 Sum_probs=119.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC-cEEEEEEEeCCChhhhhhcccccccCc---
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-TTVKFEIWDTAGQERYAALAPLYYRGA--- 107 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~--- 107 (200)
..-.|+|+|..++|||||+.+|.+.+ ...++.+.+|.+..+...+. ...++.+|...|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34579999999999999999998743 34456677777776654433 335789999988777777776666532
Q ss_pred -cEEEEEEeCCCHHhH-HHHHHHHHHHHHc--------------------------------------------------
Q 028986 108 -AVAVVVYDITSPDSF-NKAQYWVKELQKH-------------------------------------------------- 135 (200)
Q Consensus 108 -d~~i~v~d~~~~~s~-~~~~~~~~~i~~~-------------------------------------------------- 135 (200)
-++++|+|.+.|..+ +.+..|+..++.+
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 488999999999655 6777777633321
Q ss_pred ------------CCCCCeEEEEEeCCCCCCC----Cc-------CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986 136 ------------GSPDIVMALVGNKADLHEK----RE-------VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 136 ------------~~~~~p~iiv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
.+.++|++||++|+|.... .. .....++.+|..+|+.++++|++...+++.++++|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0114899999999997321 11 112346678888999999999999999999999998
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+..
T Consensus 261 h~l~~ 265 (472)
T PF05783_consen 261 HRLYG 265 (472)
T ss_pred HHhcc
Confidence 87654
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9.3e-15 Score=102.31 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=101.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc---CccEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR---GAAVA 110 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~ 110 (200)
-.|+++|+.+||||+|+-.|..+.+.....+..... ....+.+ -.++++|.||+++.+.....+++ .+-++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~---a~~r~gs---~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE---ATYRLGS---ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccce---eeEeecC---cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 469999999999999999999885544433222211 1122222 23899999999988766666655 78899
Q ss_pred EEEEeCCC--HHhHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCc------CCHHHHHH----------------
Q 028986 111 VVVYDITS--PDSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKRE------VPAQDGIE---------------- 164 (200)
Q Consensus 111 i~v~d~~~--~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~~~------~~~~~~~~---------------- 164 (200)
+||+|... ++--+....+|..+... +...+|+++..||.|+...+. ..+.|+..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999874 33223335555555544 467889999999999953211 00011110
Q ss_pred --------------H--HHHcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 165 --------------Y--AEKNGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 165 --------------~--~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
| +....+.+.++|++++ +++++-+||.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 1 1113456889999988 8999999987753
No 264
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.60 E-value=2.9e-14 Score=115.68 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=78.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------c--------cccceeEEEEEEEecCCcEEEEEEEeC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------K--------VTVGASFLSQTIALQDSTTVKFEIWDT 90 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~ 90 (200)
.+.-+|+|+|+.++|||||+++|+........ . ...+.........+.. ..+++.+|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 45569999999999999999999742110000 0 0011112222222222 2378999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
||+.++......++..+|++|+|+|+.+.... ....++.... ..++|+++++||+|+...
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCccccc
Confidence 99998887777788999999999999875322 2234444333 347899999999998654
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=6.6e-14 Score=109.90 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=53.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEE---------------------ecCCcEEEEEEEeCCC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA---------------------LQDSTTVKFEIWDTAG 92 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~D~~g 92 (200)
++|+|+|.|++|||||+|+|++........+..+.+....... ........+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998765431111111111111111 1112336799999999
Q ss_pred h----hhhhhccccc---ccCccEEEEEEeCC
Q 028986 93 Q----ERYAALAPLY---YRGAAVAVVVYDIT 117 (200)
Q Consensus 93 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 117 (200)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2223333344 78899999999997
No 266
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=1.9e-13 Score=114.86 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=78.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCC------------------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT------------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
++..+|+|+|+.++|||||+++|+...-... .......+.....+... ..++.++||||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~---~~~i~liDTPG 82 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---GHRINIIDTPG 82 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC---CEEEEEEcCCC
Confidence 3456899999999999999999975211000 01112222222233332 26899999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
+..+...+...+..+|++++|+|+........ ...+..+.. .++|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 98888888888999999999999987632222 233333333 3678999999999863
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.57 E-value=1.5e-14 Score=92.79 Aligned_cols=137 Identities=22% Similarity=0.218 Sum_probs=96.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----hhhhcccccccCccEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----RYAALAPLYYRGAAVA 110 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~ 110 (200)
||+++|+.|+|||||.++|.+.... +..+...++. +. -.+||||.- .+..........+|++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~-------d~-----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFN-------DK-----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeecc-------Cc-----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 7999999999999999999996432 2233333321 11 248999953 3333344456789999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFE 189 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 189 (200)
++|-.++++++.-... +.. ....|+|-|++|.|+.++.+ .+..+++..+.|. ++|++|+.++.|++++++
T Consensus 69 ~~v~~and~~s~f~p~-----f~~--~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 69 IYVHAANDPESRFPPG-----FLD--IGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeeecccCccccCCcc-----ccc--ccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999999885432211 111 12345899999999987544 4556677777777 699999999999999999
Q ss_pred HHHHh
Q 028986 190 VLITC 194 (200)
Q Consensus 190 ~i~~~ 194 (200)
.|...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 88654
No 268
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.57 E-value=6.9e-14 Score=113.54 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=78.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--------------------cccceeEEEEEEEecCCcEEEEEEEeC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------------------VTVGASFLSQTIALQDSTTVKFEIWDT 90 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~ 90 (200)
.+..+|+|+|++++|||||+++|+......... ...+.........+.. ..+++.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 456699999999999999999986421100000 0111222222222322 2378999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
||+..+.......+..+|++|+|+|+++.. ......++..... .++|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 999888776677788999999999998752 1223344443332 4689999999999854
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.3e-14 Score=107.00 Aligned_cols=154 Identities=21% Similarity=0.216 Sum_probs=99.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCC--CC---------------------------CCccccceeEEEEEEEecCC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DP---------------------------TSKVTVGASFLSQTIALQDS 80 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 80 (200)
.+..++++++|+..+|||||+-+|+...- ++ ......+.+.......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 36788999999999999999999875321 00 00011122222222233222
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---H--H-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F--N-KAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~-~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
. +.++++|+||+..+......-..++|+.|+|+|+++.+. | . ..+...-..+... --.+|+++||+|..+.
T Consensus 84 k-~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 84 K-YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred C-ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc
Confidence 2 689999999999988888888889999999999998731 1 1 1122211222221 2347888999999876
Q ss_pred CcCCHHHHHHHH----HHc-----CCeEEEecCCCCCCHHH
Q 028986 155 REVPAQDGIEYA----EKN-----GMFFIETSAKTADNINQ 186 (200)
Q Consensus 155 ~~~~~~~~~~~~----~~~-----~~~~~~~S~~~~~~i~~ 186 (200)
.+...+++.... +.. +++|+++|+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 554444444322 222 35799999999998764
No 270
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.55 E-value=1.6e-13 Score=115.33 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=88.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-----CC-------------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-----TS-------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
+--+|+|+|++++|||||+++|+...... .. ............+... . .++.+|||||+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~-~~i~liDTPG~ 85 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--G-HRINIIDTPGH 85 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--C-eEEEEEECCCC
Confidence 34489999999999999999997522110 00 0111112222223332 2 68999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC--
Q 028986 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-- 171 (200)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (200)
.++...+...++.+|++++|+|+.+....... .++..+.. .++|+++++||+|+.... .......+...++.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~ 159 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA 159 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence 88777788889999999999999876433322 23333333 368899999999987533 12223333333332
Q ss_pred --eEEEecCCCC
Q 028986 172 --FFIETSAKTA 181 (200)
Q Consensus 172 --~~~~~S~~~~ 181 (200)
..+++|+..+
T Consensus 160 ~~~~ipis~~~~ 171 (689)
T TIGR00484 160 VPIQLPIGAEDN 171 (689)
T ss_pred eeEEeccccCCC
Confidence 2456666554
No 271
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=3e-13 Score=100.07 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhhh---------
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERYA--------- 97 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------- 97 (200)
+.....++|+|+|.+|+|||||+|+|++............. ......... ++ .++.+|||||..+..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g--~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DG--FKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCcCcchhhHHHHHHH
Confidence 45577899999999999999999999997653332211111 111111111 22 578999999954321
Q ss_pred -hccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCC--CCeEEEEEeCCCCCCC
Q 028986 98 -ALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP--DIVMALVGNKADLHEK 154 (200)
Q Consensus 98 -~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~~ 154 (200)
.....++. ..|+++||..++....-......+..+...... -.++++|.||+|...+
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 11122332 578899988776432111112333334332211 2459999999998644
No 272
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.52 E-value=5.8e-13 Score=105.71 Aligned_cols=165 Identities=20% Similarity=0.243 Sum_probs=122.7
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc
Q 028986 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY 104 (200)
Q Consensus 25 ~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 104 (200)
.++.-..+.+++.++|+.++|||.|++.+.++.+......+....+....+... +....+.+.|.+-. ....+....
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke- 493 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE- 493 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc-
Confidence 334445677899999999999999999999988877555566666666666554 54466788888754 333333333
Q ss_pred cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe-EEEecCCCCCC
Q 028986 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADN 183 (200)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~ 183 (200)
..||+++++||.+++.++..+...++.-... ...|+++|++|+|+.+..+...-+-.+++.+++++ .+.+|.+...+
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 7799999999999999999887776655443 58999999999999776544333448889999884 67788875333
Q ss_pred HHHHHHHHHHhh
Q 028986 184 INQLFEVLITCT 195 (200)
Q Consensus 184 i~~~~~~i~~~~ 195 (200)
.++|..|..++
T Consensus 572 -~~lf~kL~~~A 582 (625)
T KOG1707|consen 572 -NELFIKLATMA 582 (625)
T ss_pred -chHHHHHHHhh
Confidence 78888887765
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.52 E-value=5.5e-13 Score=112.09 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=72.2
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986 39 LGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA 100 (200)
Q Consensus 39 ~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 100 (200)
+|+.++|||||+++|+........ ............+... .+.+.+|||||+.++...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~---~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK---GHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC---CEEEEEEECCCcHHHHHHH
Confidence 599999999999999653211000 0111112222223332 2689999999998887778
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
..++..+|++++++|++..........| ..+. ..++|+++|+||+|+.
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCC
Confidence 8888999999999999986544433322 3333 2368899999999985
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=5.8e-13 Score=100.16 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=70.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALA 100 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~ 100 (200)
+....++|+++|.+|+||||++|+|++......... +.+.......... + ..++.+|||||..+.. ...
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~--G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-A--GFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-C--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence 346788999999999999999999998764322111 1111111111111 2 3689999999954221 111
Q ss_pred cccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCC
Q 028986 101 PLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEK 154 (200)
Q Consensus 101 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~ 154 (200)
..++ ...|+++||.+++.....+.-...+..+.... ..-.++++++|+.|...+
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 2222 25899999976553211111122333333321 122458999999997644
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.49 E-value=5.4e-13 Score=96.89 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=89.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hh----hcc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YA----ALA 100 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~----~~~ 100 (200)
++|+++|.+|+||||++|.+++........ .............. ++ ..+.++||||..+ .. ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 589999999999999999999977544332 11222222222222 33 5789999999211 11 111
Q ss_pred cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-------HHHHHHHHHHcCCe
Q 028986 101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-------AQDGIEYAEKNGMF 172 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 172 (200)
.......|++++|+...... .......++..+... ..-..++||.|..|......+. ......+.+..+-.
T Consensus 78 ~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~-~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGE-EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCG-GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccH-HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12345689999999998321 112222222222211 1123488889998876554311 12244556666777
Q ss_pred EEEecCC------CCCCHHHHHHHHHHhhccc
Q 028986 173 FIETSAK------TADNINQLFEVLITCTSSY 198 (200)
Q Consensus 173 ~~~~S~~------~~~~i~~~~~~i~~~~~~~ 198 (200)
|...+.+ ....+.++++.|-+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 7777766 3356788888877766553
No 276
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=1e-13 Score=108.24 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=111.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-----hhhhc----cc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-----RYAAL----AP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~----~~ 101 (200)
...-.++|+|.|++|||||+|.+..........+..+ ...-+...+..-.+++++||||.- +.+.. ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTT---ksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTT---KLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCccccc---chhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 4445799999999999999999998765433332221 111222234444789999999931 11111 11
Q ss_pred ccccCccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH---HHHHHHHcCCeEEEe
Q 028986 102 LYYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD---GIEYAEKNGMFFIET 176 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (200)
...+--.+|+|+.|++.. -|......+|..|+.. ..+.|.|+|+||+|......++.+. +..+...-++++++.
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 112223589999999964 4667777788888876 5678899999999997776665443 223334446899999
Q ss_pred cCCCCCCHHHHHHHHHHhhcc
Q 028986 177 SAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~~~ 197 (200)
|..+.+|+.++....++.+..
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred cccchhceeeHHHHHHHHHHH
Confidence 999999999988887776643
No 277
>PRK13768 GTPase; Provisional
Probab=99.49 E-value=2.4e-13 Score=101.11 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=70.7
Q ss_pred EEEEEeCCChhhh---hhccccccc---C--ccEEEEEEeCCCHHhHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 84 KFEIWDTAGQERY---AALAPLYYR---G--AAVAVVVYDITSPDSFNKA--QYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 84 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
.+.+||+||+.+. ...+..+++ . .+++++++|+......... ..|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997553 233322222 2 8999999999754322221 2233322222 34789999999999865
Q ss_pred CCcCCHHHHHH----------------------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 154 KREVPAQDGIE----------------------------YAEKNG--MFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 154 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..+. +...+ ..+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4332 11111 122223 47899999999999999999988774
No 278
>PRK00007 elongation factor G; Reviewed
Probab=99.49 E-value=1e-12 Score=110.51 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=88.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCC--C---C-------------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD--P---T-------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
++-.+|+|+|++++|||||+++|+...-. . . .......+.....+... ..++.++||||
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~---~~~~~liDTPG 84 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---DHRINIIDTPG 84 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC---CeEEEEEeCCC
Confidence 34559999999999999999999742110 0 0 01111222222223332 26899999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM- 171 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~- 171 (200)
+.++.......+..+|++++|+|+...-..+. ...+..+.. .++|+++++||+|+.... ......++...++.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN 158 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence 98877667777888999999999886633333 223333333 367889999999987533 22233333333333
Q ss_pred ---eEEEecCCCC
Q 028986 172 ---FFIETSAKTA 181 (200)
Q Consensus 172 ---~~~~~S~~~~ 181 (200)
..+++|+..+
T Consensus 159 ~~~~~ipisa~~~ 171 (693)
T PRK00007 159 PVPIQLPIGAEDD 171 (693)
T ss_pred eeeEEecCccCCc
Confidence 3456666555
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=2e-12 Score=111.14 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=91.5
Q ss_pred cHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc---------------EEEEEEEeCCChhhhhhcccccccCccE
Q 028986 45 GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST---------------TVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 45 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
+||||+.++.+......-.-.++.+.....+...... .-.+.+|||||++.+.......+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999865533222222222222222222110 0138999999999988877778888999
Q ss_pred EEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC----------------HHHHH----HH-
Q 028986 110 AVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP----------------AQDGI----EY- 165 (200)
Q Consensus 110 ~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~----------------~~~~~----~~- 165 (200)
+++|+|+++ +.+++.+. .+.. .++|+++|+||+|+....... ..+.. ++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999986 34444332 2332 267899999999985422110 00100 00
Q ss_pred --HHH---------------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 166 --AEK---------------NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 166 --~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..+ ..++++++||++|.|+++++.+|....+
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1457999999999999999998875443
No 280
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.46 E-value=7.3e-13 Score=87.95 Aligned_cols=114 Identities=33% Similarity=0.472 Sum_probs=82.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~ 52 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ 52 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence 489999999999999999998776653333 2222 22333456777899999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 185 (200)
+++.....+++.+ |...+....+.++|.++++||.|+.+......++.. .++++|++++.++.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 9999999888765 777776666677899999999998443333333322 35677888888874
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.46 E-value=1.4e-12 Score=93.67 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=65.3
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 162 (200)
....++++.|..-..... .. -+|.++.|+|+.+.++... .+...+. ..=++++||+|+........+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 456778888843222221 11 1588999999997655321 1111221 11378899999975322233444
Q ss_pred HHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 163 IEYAEK--NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 163 ~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.+..+. .+.+++++|+++|+|+++++++|.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444444 4578999999999999999999988754
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=2e-12 Score=100.68 Aligned_cols=88 Identities=16% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQER 95 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~ 95 (200)
....++|.|+|.|++|||||+|+|++........+..+.+.....+.+.+.. ..++.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3567799999999999999999998865432222222222222233332221 24689999999421
Q ss_pred -------hhhcccccccCccEEEEEEeCC
Q 028986 96 -------YAALAPLYYRGAAVAVVVYDIT 117 (200)
Q Consensus 96 -------~~~~~~~~~~~~d~~i~v~d~~ 117 (200)
.....-..++++|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1111122367799999999974
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=7.2e-13 Score=98.08 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=78.3
Q ss_pred hhhhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe
Q 028986 94 ERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF 172 (200)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 172 (200)
+++..+...+++++|.+++|+|+.++. +++.+..|+..+.. .++|+++|+||+|+....+...+.... ....+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCe
Confidence 566777888999999999999999876 89999999886654 478999999999996554433334433 3457889
Q ss_pred EEEecCCCCCCHHHHHHHHHHh
Q 028986 173 FIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
++++|++++.|++++|+.+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCC
Confidence 9999999999999999987653
No 284
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.44 E-value=1.1e-11 Score=95.96 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=96.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCC--------------Cccccc-------eeE---EEEEEEecCCcEEEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT--------------SKVTVG-------ASF---LSQTIALQDSTTVKFE 86 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~~-------~~~---~~~~~~~~~~~~~~~~ 86 (200)
...+.|.|+|+.++|||||+|+|.+.-.-|+ .+...+ ..+ ....+...++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 4567899999999999999999998722111 111112 222 2233444455557899
Q ss_pred EEeCCChhhh--------hh------c---------------cccccc-CccEEEEEE-eCC----CHHhH-HHHHHHHH
Q 028986 87 IWDTAGQERY--------AA------L---------------APLYYR-GAAVAVVVY-DIT----SPDSF-NKAQYWVK 130 (200)
Q Consensus 87 l~D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~ 130 (200)
++||+|-..- .. - ....+. .+|+.|+|. |.+ .++.+ +.-..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999992110 00 0 222344 789998888 775 12222 33356666
Q ss_pred HHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC--CCCHHHHHHHHH
Q 028986 131 ELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT--ADNINQLFEVLI 192 (200)
Q Consensus 131 ~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~ 192 (200)
.+++. ++|+++|+||.|..... ..+...++..+++++++.+|+.. ..++..+++.++
T Consensus 175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 66654 88999999999943322 33444566667788877777654 345555555544
No 285
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=6.6e-13 Score=112.01 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCC---------------CCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ---------------FDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
...||+|+|+.++|||||+++|+... +.+. ...+............ +...+++.+|||||+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~-~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY-EGNEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee-cCCceEEEEEeCCCc
Confidence 45699999999999999999997531 1110 1112222221112223 233478999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
.++.......+..+|++++|+|+......+....| ..+. ..+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhccc
Confidence 88877778889999999999999875322221212 2222 33567889999999853
No 286
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.43 E-value=2.2e-12 Score=98.98 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=82.5
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCH----------HhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----------DSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~ 151 (200)
+.+.+||++|+...+..|.+++.+++++++|+|+++. ..+......+..+... ...++|+++++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 6789999999999999999999999999999999974 3344444444444332 2467999999999997
Q ss_pred CCC----------------CcCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 152 HEK----------------REVPAQDGIEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 152 ~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
... .....+.+..+... ..+....++|.+..++..+|+.+.+.+..
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 321 12233444444432 13345678999999999999988887654
No 287
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.42 E-value=3.2e-12 Score=92.55 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=85.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC--------ccccce----eEEEEEEEecCC------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGA----SFLSQTIALQDS------------------ 80 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~------------------ 80 (200)
.....|.++|+.|+|||||++++......... ...... ......+...++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 34668999999999999999999764110000 000000 000000111111
Q ss_pred -cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH
Q 028986 81 -TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA 159 (200)
Q Consensus 81 -~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~ 159 (200)
....+.++|+.|.-.. . ..+....+..+.++|+.+.+... ..... ....|.++++||+|+........
T Consensus 100 ~~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~------~~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKYPG------MFKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred cCCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhhHh------HHhhCCEEEEEHHHccccchhhH
Confidence 0135667777772100 0 11112245556777777543211 11111 12356799999999965433223
Q ss_pred HHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 160 QDGIEYAEKN--GMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 160 ~~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
++..+..+.. ..+++++|++++.|++++++++.+..
T Consensus 169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3444444443 37899999999999999999998754
No 288
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.42 E-value=1.7e-12 Score=94.56 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred EEEEEeCCChhhhh------hccccccc--CccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 84 KFEIWDTAGQERYA------ALAPLYYR--GAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 84 ~~~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
...++||||+-+.- ......+. ...+++|++|.....+- ..+...+-...-....+.|+|++.||.|+...
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDS 196 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccccc
Confidence 68899999974311 11111111 23577888886543221 22233333333334668999999999999654
Q ss_pred Cc-----CCHHHHHHHHH-------------------H--cCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 155 RE-----VPAQDGIEYAE-------------------K--NGMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 155 ~~-----~~~~~~~~~~~-------------------~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
.- .+.+..++..+ + .++..+-+|+.+|.|.+++|..+.+.+.++
T Consensus 197 ~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 197 EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 11 01111111111 0 245678999999999999999998887765
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.42 E-value=4.1e-12 Score=93.03 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=81.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.....|+|+|++|+|||||++.|.+...........+. + .+... ...++.++|+||.. ... ....+.+|++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~~--~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVTG--KKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEec--CCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 44567999999999999999999875221111111111 1 11111 22578999999864 222 2235779999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCCH---HHHHH-HHHH--cCCeEEEecCCCCC
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPA---QDGIE-YAEK--NGMFFIETSAKTAD 182 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~---~~~~~-~~~~--~~~~~~~~S~~~~~ 182 (200)
++++|++....... ..++..+... +.| +++|+||+|+........ +.+.+ +..+ .+.+++.+|+++..
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999986533222 2344444433 456 455999999864322111 11222 2222 24689999998874
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.41 E-value=1.6e-12 Score=100.29 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=79.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCcccc--ceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-----cc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTV--GASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-----PL 102 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----~~ 102 (200)
..+++|+|+|.+|+|||||||+|.+-.-. +...++. .++........++.. .+.+||.||........ ..
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p--nv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP--NVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T--TEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC--CCeEEeCCCCCCCCCCHHHHHHHc
Confidence 46789999999999999999999763211 1112211 111112222222222 58999999953221111 22
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC-------CCCcCC----HHHHHHHHHH---
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH-------EKREVP----AQDGIEYAEK--- 168 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~-------~~~~~~----~~~~~~~~~~--- 168 (200)
-+...|.+|++.+-.=. ... ..+...+.+. +.|+++|-+|+|.. .++... .+++++.|.+
T Consensus 111 ~~~~yD~fiii~s~rf~--~nd-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFT--END-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp TGGG-SEEEEEESSS----HHH-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCCCc--hhh-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 35567988887764322 111 2233444443 77899999999961 111222 2333333332
Q ss_pred -cCC---eEEEecCCCC--CCHHHHHHHHHHhhccc
Q 028986 169 -NGM---FFIETSAKTA--DNINQLFEVLITCTSSY 198 (200)
Q Consensus 169 -~~~---~~~~~S~~~~--~~i~~~~~~i~~~~~~~ 198 (200)
.++ ++|-+|..+- .++..+.+.|.+.+...
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 233 5888888774 56888888888776543
No 291
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.40 E-value=3.1e-12 Score=89.62 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=44.6
Q ss_pred EEEEEeCCChhh----hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986 84 KFEIWDTAGQER----YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (200)
Q Consensus 84 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 149 (200)
.+.|+|+||... ....+..+++.+|++|||.++.+..+-.....+.+..... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 688999999532 3356777889999999999999875555555555555443 23388999985
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.40 E-value=7.6e-12 Score=95.81 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=66.2
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQ 160 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~ 160 (200)
+.+.++||+|....... ....+|.++++.+....+.+..... .+.+ ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 58899999996522221 4667999999987555554444332 1111 113799999998653211 112
Q ss_pred HHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 161 DGIEYAEK-------NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 161 ~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+....... +..+++.+|++++.|++++++.|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222221 2357999999999999999999998764
No 293
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.40 E-value=1.6e-13 Score=100.85 Aligned_cols=112 Identities=21% Similarity=0.155 Sum_probs=58.6
Q ss_pred EEEEEeCCChhhhhhcccccc--------cCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 84 KFEIWDTAGQERYAALAPLYY--------RGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 84 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
.+.++|||||-+....+.... ...-++++++|.....+ ...+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999877654443332 33458888999774322 222233232222222348999999999999762
Q ss_pred Cc------------C-------CHHHHHHHHHH---cC-C-eEEEecCCCCCCHHHHHHHHHHhh
Q 028986 155 RE------------V-------PAQDGIEYAEK---NG-M-FFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 155 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
.. . ......+++.. .+ . .++++|+.+++++.+++..|-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 01111122222 22 3 699999999999999999887764
No 294
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=6e-12 Score=97.78 Aligned_cols=158 Identities=15% Similarity=0.240 Sum_probs=108.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC--CCC------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ--FDP------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA 100 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 100 (200)
+|+|+.+-.=|||||+..|+... |.. .....-+.+...+...+.... .++.++||||+.+|....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~-~~INIvDTPGHADFGGEV 85 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG-TRINIVDTPGHADFGGEV 85 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC-eEEEEecCCCcCCccchh
Confidence 79999999999999999998642 111 111223444444444443333 789999999999999999
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHH-------HcCCe
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAE-------KNGMF 172 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 172 (200)
+..+.-+|.+++++|+...- +.+.+..+.... ..+.+.|+|+||+|....+.. ..++...+.. +++.|
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl---~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHH---HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 99999999999999998641 233333333333 335667899999998665331 1122223322 35678
Q ss_pred EEEecCCCCC----------CHHHHHHHHHHhhcc
Q 028986 173 FIETSAKTAD----------NINQLFEVLITCTSS 197 (200)
Q Consensus 173 ~~~~S~~~~~----------~i~~~~~~i~~~~~~ 197 (200)
+++.|++.|. ++.-+|+.|++.+..
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 9999998874 688899999887653
No 295
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.36 E-value=3.7e-11 Score=90.50 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=71.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC--------ccccceeEEEEEEE-ecCCcEEEEEEEeCCChh--------
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGASFLSQTIA-LQDSTTVKFEIWDTAGQE-------- 94 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~-------- 94 (200)
..++|+|+|.+|+|||||+|.|++....... .............. ..++..+.+.++||||..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999996543221 01111122222222 235667899999999910
Q ss_pred ----------hhh--------hcc-cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 95 ----------RYA--------ALA-PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 95 ----------~~~--------~~~-~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
.+. ..+ ...=...|+++|+++++... .-.. ...+..+ ...+++|.|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~L----s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRL----SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHh----cccccEEeEEecccccCH
Confidence 111 000 01113478999999987532 1112 2233333 446789999999997543
Q ss_pred CcCC--HHHHHHHHHHcCCeEEEe
Q 028986 155 REVP--AQDGIEYAEKNGMFFIET 176 (200)
Q Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~~ 176 (200)
.+.. ...+.+....+++.++.-
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHHcCceeecc
Confidence 2211 122233344566665543
No 296
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=6e-12 Score=107.79 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=78.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------c----cccceeEEEEEEEec-------------CCc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------K----VTVGASFLSQTIALQ-------------DST 81 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------~----~~~~~~~~~~~~~~~-------------~~~ 81 (200)
++--+|+|+|+.++|||||+.+|+........ . ...........+.+. ...
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 34558999999999999999999864311000 0 000011111111111 123
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 82 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
.+.+.++||||+.++.......++.+|++|+|+|+...-......-| ..+. ..++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence 47889999999999988888889999999999999976433332222 2232 4478899999999986
No 297
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=3.7e-11 Score=91.69 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=80.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhH-------HHH---HHHHHHHHH-cCCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-------NKA---QYWVKELQK-HGSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~---~~~~~~i~~-~~~~~~p~iiv~nK~D~ 151 (200)
..+.++|.+||...+..|.+.+.+++++|||++++..+.. +.+ ..+++.+-. ....+.++|+++||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 5799999999999999999999999999999999965322 122 223333322 23557899999999999
Q ss_pred CCCC---------------cCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 152 HEKR---------------EVPAQDGIEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.+.+ ....+++..+... ..+.+..+.|.+..+|+.+|..+.+.+..
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 5320 0123344433332 12345667899999999999998887754
No 298
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.34 E-value=2.1e-11 Score=94.37 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=81.1
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCH----------HhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----------DSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~ 151 (200)
..+.+||.+|+...+..|.+++.+++++|||+|+++. ..+......+..+... ...+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4789999999999999999999999999999999963 2344444444444332 3467999999999998
Q ss_pred CCC---------------CcCCHHHHHHHHHH-----c------CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 152 HEK---------------REVPAQDGIEYAEK-----N------GMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 152 ~~~---------------~~~~~~~~~~~~~~-----~------~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
... -....+.+.++... . .+....++|.+..++..+|+.+.+.+..
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 421 00123333433322 1 2345678899999999999888776653
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.34 E-value=2.6e-11 Score=102.74 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=74.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----------------cccceeEEEEEEEe-cCCcEEEEEEEeCCChh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----------------VTVGASFLSQTIAL-QDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~ 94 (200)
+.-+|+|+|+.++|||||+.+|+......... ...........+.+ .++....+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 44589999999999999999998632110000 00001111111111 12234789999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
++.......+..+|++++|+|+...-...... .+...... +.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHHc---CCCeEEEEECchhh
Confidence 88888888889999999999988753222222 22222222 45778999999975
No 300
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.34 E-value=7.2e-11 Score=91.16 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=51.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh----
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER---- 95 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~---- 95 (200)
++|+++|.|++|||||+|+|++........+..+.+.....+.+.+. .+.++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999997632211122221222222222221 123689999999421
Q ss_pred hhh---cccccccCccEEEEEEeCC
Q 028986 96 YAA---LAPLYYRGAAVAVVVYDIT 117 (200)
Q Consensus 96 ~~~---~~~~~~~~~d~~i~v~d~~ 117 (200)
-.. ..-..++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 1122357899999999984
No 301
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.4e-11 Score=94.72 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=103.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCC-----------------------------CCCCccccceeEEEEEEEecC
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF-----------------------------DPTSKVTVGASFLSQTIALQD 79 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 79 (200)
..+..++++|+|+-.+|||||+.+|+...- ........+.+.......+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe- 251 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE- 251 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-
Confidence 345678999999999999999999875321 00011112233333333332
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHH---HHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFN---KAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
-....++|+|+||+..|......-..++|+.++|+|++..+ .|+ ..+.....++... -..++|++||.|+..
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence 33368999999999888888888888899999999999642 222 2222223333332 334788899999998
Q ss_pred CCcCCHHHHHH----HH-HHc-----CCeEEEecCCCCCCHHHH
Q 028986 154 KREVPAQDGIE----YA-EKN-----GMFFIETSAKTADNINQL 187 (200)
Q Consensus 154 ~~~~~~~~~~~----~~-~~~-----~~~~~~~S~~~~~~i~~~ 187 (200)
+.+..++++.. |. +.. .+.|++||+..|+|+-..
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 87766766664 33 222 346999999999987543
No 302
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=7.6e-11 Score=88.71 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcC----CCCCCCcc-----ccceeEEEEE----EEecCCcEEEEEEEeCCChhhhhh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRG----QFDPTSKV-----TVGASFLSQT----IALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~----~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
..+++.++|+-.||||+|.++|..- .|+.+..+ +....+.... ...+.+.+.++.++|.||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 3489999999999999999999763 22222221 1111122211 233466678999999999977665
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc------
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKN------ 169 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~------ 169 (200)
......+-.|..++|+|+.....-+..+-++ +.+.. -...++|+||+|...+.+.. .+...+..+.+
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 5555556679999999998653222222111 11111 12267888999986542211 12222222221
Q ss_pred -CCeEEEecCCCC----CCHHHHHHHHHHhh
Q 028986 170 -GMFFIETSAKTA----DNINQLFEVLITCT 195 (200)
Q Consensus 170 -~~~~~~~S~~~~----~~i~~~~~~i~~~~ 195 (200)
+.|++++|++.| +++.++.+.|-+.+
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 468999999999 67777777766655
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=99.32 E-value=1.2e-11 Score=105.84 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC---CCc-------------cccceeEEEEEEEec-------CCcEEEEEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP---TSK-------------VTVGASFLSQTIALQ-------DSTTVKFEIW 88 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~-------------~~~~~~~~~~~~~~~-------~~~~~~~~l~ 88 (200)
..-+|+|+|+.++|||||+++|+...-.. ... ...........+.+. ++....+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34499999999999999999998732110 000 000001001111221 1224679999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
||||+.++.......++.+|++|+|+|+...-.... ...+..+. ..++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~---~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQAL---QERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHH---HcCCCEEEEEEChhhh
Confidence 999999888888888999999999999987633222 22333333 3357899999999986
No 304
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.31 E-value=9.3e-12 Score=86.67 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=56.8
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCCCCCCHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQ 186 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~ 186 (200)
.-|+|+|....+... .+-...+. ..=++|+||.|+...-..+.+...+-+++. +.+++++|.++|+|+++
T Consensus 120 ~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 120 LRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred eEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence 888999988763111 11001111 124789999999887666677777777664 57899999999999999
Q ss_pred HHHHHHHhh
Q 028986 187 LFEVLITCT 195 (200)
Q Consensus 187 ~~~~i~~~~ 195 (200)
+++|+....
T Consensus 192 ~~~~i~~~~ 200 (202)
T COG0378 192 WLRFIEPQA 200 (202)
T ss_pred HHHHHHhhc
Confidence 999998764
No 305
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.1e-11 Score=92.23 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=106.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----cccc-----------------eeEEEEEE-Eec---CCcEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----VTVG-----------------ASFLSQTI-ALQ---DSTTVK 84 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----~~~~-----------------~~~~~~~~-~~~---~~~~~~ 84 (200)
+..++|.++|+-.=|||||.++|.+--....+. .++. ..+..... ... ..-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999997632111000 0000 00100000 000 111247
Q ss_pred EEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHH
Q 028986 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDG 162 (200)
Q Consensus 85 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~ 162 (200)
+.+.|.||++-.....-.-..-.|+.++|++++.+..-.+....+..+.-.. -..++++-||+|+...+. -..+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8999999998766655554555799999999997644434333333333221 234899999999965422 134566
Q ss_pred HHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 163 IEYAEK---NGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 163 ~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++|.+. -+++++++||..+.|++.+++.|.+.+..
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 666654 37799999999999999999999887753
No 306
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.30 E-value=8.4e-11 Score=88.65 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=98.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCC---------------------------------CCCCccccceeEEEEEEE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF---------------------------------DPTSKVTVGASFLSQTIA 76 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 76 (200)
.+..++.+-+|.-.=||||||-+|+.+.. .......+..+..++-+
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF- 81 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF- 81 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec-
Confidence 35678999999999999999999976421 01111222333333322
Q ss_pred ecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHH--HHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 77 LQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ--YWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 77 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
.....++.+-||||+++|......-...||+.|+++|+...- ++..+ .++..+.. -..+++.+||+||..-
T Consensus 82 --sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy 154 (431)
T COG2895 82 --STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDY 154 (431)
T ss_pred --ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeeccccc
Confidence 233357999999999999988888788899999999997652 22221 12222221 1337888999999775
Q ss_pred CcCCHHHHH----HHHHHcCC---eEEEecCCCCCCHH
Q 028986 155 REVPAQDGI----EYAEKNGM---FFIETSAKTADNIN 185 (200)
Q Consensus 155 ~~~~~~~~~----~~~~~~~~---~~~~~S~~~~~~i~ 185 (200)
.+...+++. .|+..+++ .++++||..|.|+-
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 444444443 46666655 59999999999875
No 307
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.29 E-value=7.2e-11 Score=96.27 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh----------hh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----------AA 98 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~ 98 (200)
+-...++|+++|.+|+||||++|.|++............++.........++ ..+.++||||..+. ..
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 3456679999999999999999999997643332211122211111111233 57999999994321 11
Q ss_pred ccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCC
Q 028986 99 LAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHE 153 (200)
Q Consensus 99 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~ 153 (200)
....++. ..|++|+|..++.......-..++..+......+ ..+|||+|+.|...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1122333 4799999998764332212234445554433222 33899999999875
No 308
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.4e-11 Score=100.31 Aligned_cols=166 Identities=18% Similarity=0.196 Sum_probs=107.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----CccccceeEEEEE--------EEecC---CcEEEEEEEeCCChh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----SKVTVGASFLSQT--------IALQD---STTVKFEIWDTAGQE 94 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~--------~~~~~---~~~~~~~l~D~~g~~ 94 (200)
.-+..-+||+|+-.+|||-|+..+-+...... ....++.+|++.. +.-.. ...--+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 34455699999999999999999987433211 1122333333322 00000 111247899999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-CC---------------
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VP--------------- 158 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-~~--------------- 158 (200)
.|..++......||++|+|+|+-..-.-+.+. -++.++ ..+.|+||.+||+|..-.+. ..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhH-HHHHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 99999999999999999999998652222222 223344 34788999999999742211 00
Q ss_pred --------HHHHHHHHHH-cC-------------CeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986 159 --------AQDGIEYAEK-NG-------------MFFIETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 159 --------~~~~~~~~~~-~~-------------~~~~~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
...+.+|+.. ++ +.++++||..|+||.+++.+|+++.+.+|
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0111122221 11 24789999999999999999999887765
No 309
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.27 E-value=1e-11 Score=92.51 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=107.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~ 101 (200)
....-|.++|..++|||||+++|+.....+...-....+.+......+.|. .+.+.||.|.- .|....+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 344569999999999999999999766655555555556666666677776 67889999932 2333322
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe----EEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEec
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV----MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 177 (200)
....+|.++-|.|++.|..-+.....+..+++..-+..| ++=|-||.|..+... .++ .++ .+.+|
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--e~E------~n~--~v~is 322 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--EEE------KNL--DVGIS 322 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--ccc------cCC--ccccc
Confidence 245699999999999997666666666777766444444 344567888654322 111 122 57899
Q ss_pred CCCCCCHHHHHHHHHHhhcc
Q 028986 178 AKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~~~ 197 (200)
+++|.|++++.+.+-.+..+
T Consensus 323 altgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCccHHHHHHHHHHHhhh
Confidence 99999999999888776554
No 310
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.8e-11 Score=87.08 Aligned_cols=146 Identities=21% Similarity=0.298 Sum_probs=88.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-----hcccccccC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-----ALAPLYYRG 106 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----~~~~~~~~~ 106 (200)
.-||+++|.+|+||||+=-.++.+.. ....-.+...+.....+.+- | ...+.+||.+|++.+- ......+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-G-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-G-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-h-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 34899999999999997444442211 01112222233333333332 2 2578999999987433 244567899
Q ss_pred ccEEEEEEeCCCHHhHHHHHH---HHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHH----HcCCeEEEec
Q 028986 107 AAVAVVVYDITSPDSFNKAQY---WVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAE----KNGMFFIETS 177 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~----~~~~~~~~~S 177 (200)
.++++++||++..+-..++.. -++.+.++ .+...+.+.+.|.|+..... ...++..+... ..++.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999998764444443 33444444 66778899999999965422 22222222222 2355678887
Q ss_pred CCCC
Q 028986 178 AKTA 181 (200)
Q Consensus 178 ~~~~ 181 (200)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7654
No 311
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.25 E-value=1.7e-10 Score=86.35 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh----hh
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER----YA 97 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~----~~ 97 (200)
|+|+|.|+||||||+|+|++........+..+.+.....+.+.+. .+.+++++|+||... ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999997653222222222222222233221 123699999999421 11
Q ss_pred hcc---cccccCccEEEEEEeCC
Q 028986 98 ALA---PLYYRGAAVAVVVYDIT 117 (200)
Q Consensus 98 ~~~---~~~~~~~d~~i~v~d~~ 117 (200)
.+. -..++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111 12356799999999874
No 312
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.2e-10 Score=86.02 Aligned_cols=148 Identities=16% Similarity=0.231 Sum_probs=85.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------ccccceeEEEEEEE-ecCCcEEEEEEEeCCChh------
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------KVTVGASFLSQTIA-LQDSTTVKFEIWDTAGQE------ 94 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~------ 94 (200)
++...++++++|+.|.|||||+|.|+........ .+............ ..++..++++++||||..
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 3456799999999999999999999987443220 01011122222222 235667899999999921
Q ss_pred ------------hhh-------hccccccc--CccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 95 ------------RYA-------ALAPLYYR--GAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 95 ------------~~~-------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
.+. ......+. .+|+++|.+.++... +..+ ..++..+ ...+++|.|+.|+|..
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l----~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL----SKKVNLIPVIAKADTL 171 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH----hccccccceeeccccC
Confidence 111 11112223 478888888876431 2211 2233333 4467789999999986
Q ss_pred CCCcC--CHHHHHHHHHHcCCeEEEecCCCC
Q 028986 153 EKREV--PAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 153 ~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
...+. -...+.+.+..+++++|.-.....
T Consensus 172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred CHHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 54332 123334444556777665554443
No 313
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-09 Score=78.69 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=101.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhccccccc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLYYR 105 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~ 105 (200)
.-+|+++|.|.+|||||+..++.-............+..+..+.+.+ ..+++.|.||.-+- ....-...+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g---a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG---ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC---ceEEEecCcccccccccCCCCCceEEEEee
Confidence 45799999999999999999987443332332333333344444433 47899999994221 233344567
Q ss_pred CccEEEEEEeCCCHHhH-HHHHHHHHHHH---------------------------------------------------
Q 028986 106 GAAVAVVVYDITSPDSF-NKAQYWVKELQ--------------------------------------------------- 133 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~--------------------------------------------------- 133 (200)
.+|.++.|+|++..+.- +.+.+.++.+-
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 79999999999975433 23344443111
Q ss_pred --------------HcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 134 --------------KHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 134 --------------~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
......++++.|-||+| +++.++..++++.-+. +-+|+....|++.+++.|++.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 01123477888888888 4667888888877664 55666777889999999988764
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.24 E-value=6.8e-11 Score=90.28 Aligned_cols=102 Identities=23% Similarity=0.068 Sum_probs=62.9
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH-
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD- 161 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~- 161 (200)
+.+.++||+|..... ......+|.++++.+....+ .+..+...+ .++|.++|+||+|+..........
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence 688999999853211 22466688888886544333 333222222 245678999999986543211000
Q ss_pred -----HHHHHH---HcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 162 -----GIEYAE---KNGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 162 -----~~~~~~---~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
...+.. .+..+++++|++++.|+++++++|.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 011111 1234689999999999999999998864
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.22 E-value=2.4e-10 Score=83.87 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=43.8
Q ss_pred EEEEEEeCCChh-------------hhhhcccccccC-ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986 83 VKFEIWDTAGQE-------------RYAALAPLYYRG-AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148 (200)
Q Consensus 83 ~~~~l~D~~g~~-------------~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 148 (200)
..++++|+||.. ....+...|+++ .+++++|+|+...-.-.....+...+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 478999999953 122445566774 569999999875322222222223332 446789999999
Q ss_pred CCCCCC
Q 028986 149 ADLHEK 154 (200)
Q Consensus 149 ~D~~~~ 154 (200)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 316
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.21 E-value=1e-09 Score=83.43 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=82.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----------CccccceeEEEEEEEecCCcEEEEEEEeCCChh-----
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----- 94 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----- 94 (200)
....++|+++|+.|+|||||+|.|++...... ..++........ ....++..+.++++||||..
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKA-ELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeee-eeecCCeEEEEEEeccCCccccccc
Confidence 46789999999999999999999998632211 112222222222 22345666899999999911
Q ss_pred -------------hhh--------hcccccc--cCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986 95 -------------RYA--------ALAPLYY--RGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD 150 (200)
Q Consensus 95 -------------~~~--------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D 150 (200)
.+. ..+..-+ ..+|+++|.+.++... +..+ ...+..+ ...+.+|.|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~l----s~~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRL----SKRVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHH----hcccCeeeeeeccc
Confidence 111 1111111 2367888888876432 2221 2233334 33566899999999
Q ss_pred CCCCCcC--CHHHHHHHHHHcCCeEEE
Q 028986 151 LHEKREV--PAQDGIEYAEKNGMFFIE 175 (200)
Q Consensus 151 ~~~~~~~--~~~~~~~~~~~~~~~~~~ 175 (200)
.....+. -.+.+.+....+++++|.
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 8654332 123344455567888774
No 317
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.4e-10 Score=87.94 Aligned_cols=123 Identities=14% Similarity=0.224 Sum_probs=79.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecC-----CcE----------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQD-----STT---------------------- 82 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~---------------------- 82 (200)
....=|+++|+...||||||+.|+..+++.... +...+++....+.-.. |..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 344459999999999999999999988763322 2222222222211111 000
Q ss_pred -----------EEEEEEeCCChh-----------hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCC
Q 028986 83 -----------VKFEIWDTAGQE-----------RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI 140 (200)
Q Consensus 83 -----------~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 140 (200)
-.++++||||.- .+....+.|...+|.+|++||+..-+--+.....+..++.+ .-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---ED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cc
Confidence 078999999932 23355566788899999999988654444445555555544 44
Q ss_pred eEEEEEeCCCCCCCCc
Q 028986 141 VMALVGNKADLHEKRE 156 (200)
Q Consensus 141 p~iiv~nK~D~~~~~~ 156 (200)
.+-+|+||+|+.+.++
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 4888999999765443
No 318
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=5.4e-10 Score=80.19 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=82.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC---------CCccccceeEEEEEEEecCCcEEEEEEEeCCCh-------
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP---------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ------- 93 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~------- 93 (200)
....++|+|+|++|.|||||+|.|+...... ....+........ +...++...+++++||||.
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th-vieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH-VIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee-eeeecceEEEEEEecCCCcccccCcc
Confidence 4568999999999999999999998643311 1112222222222 2233556688999999991
Q ss_pred -------------------hhhhhcccccccC--ccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 94 -------------------ERYAALAPLYYRG--AAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 94 -------------------~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
++....++..+.. +++++|.+..+. .++..+ ..++..+.+ -+.++.|+.|+|-
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccc
Confidence 1112223334444 456666665543 334333 334444433 3558889999996
Q ss_pred CCC--CcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 152 HEK--REVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
..- +..-.+.+++-...+++.+++--+.+-.
T Consensus 197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 432 1112233344444567777765555433
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.11 E-value=8.9e-10 Score=82.55 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=40.1
Q ss_pred CeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 140 IVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 140 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
.+-++|+||+|+........+...+..+.. .++++++|++++.|++++++||.++.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 446899999999653222233334444333 57899999999999999999998754
No 320
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.5e-09 Score=90.41 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=82.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----C-----------ccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----S-----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
+..-+|.|+|+-.+|||||..+|+...-... . ...-+.+.....+.......++++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 4455899999999999999999975321100 0 01112222222222222214789999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
++.......++-+|++++|+|+...-..+.-.-| ++....++|.++++||+|....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~----rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW----RQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH----HHHhhcCCCeEEEEECcccccc
Confidence 9999999999999999999999976433333333 3344558999999999998654
No 321
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.9e-09 Score=83.67 Aligned_cols=154 Identities=19% Similarity=0.102 Sum_probs=101.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
-|.-.|+-.-|||||+..+.+..... ......+.+.........+ ..+.++|.||++++-...-..+...|..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d---~~~~fIDvpgh~~~i~~miag~~~~d~al 78 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED---GVMGFIDVPGHPDFISNLLAGLGGIDYAL 78 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC---CceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence 46778999999999999999864322 2222233333333333333 37999999999998887777788899999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH---cCCeEEEecCCCCCCHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK---NGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~ 188 (200)
+|+++++.-..+..+ .+..+.... -...++|+||+|..++.. ..+...+.... .+.+++.+|+++|+|++++.
T Consensus 79 LvV~~deGl~~qtgE-hL~iLdllg--i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 79 LVVAADEGLMAQTGE-HLLILDLLG--IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EEEeCccCcchhhHH-HHHHHHhcC--CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 999997542222111 112222221 223689999999876532 12222222222 35678999999999999999
Q ss_pred HHHHHhh
Q 028986 189 EVLITCT 195 (200)
Q Consensus 189 ~~i~~~~ 195 (200)
+.|.+..
T Consensus 155 ~~l~~L~ 161 (447)
T COG3276 155 NELIDLL 161 (447)
T ss_pred HHHHHhh
Confidence 9999887
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.2e-09 Score=88.57 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=82.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----------------cccceeEEEEEE--EecCCcEEEEEEEeCC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----------------VTVGASFLSQTI--ALQDSTTVKFEIWDTA 91 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~~l~D~~ 91 (200)
....+|.++|+-+.|||+|+..|....-+.... ........+.++ ....++.+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 456689999999999999999998753211100 111111222222 2235567889999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
|+-.+.......++.+|++++++|+...-.++.-+- +. ..-....|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ik---haiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IK---HAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HH---HHHhccCcEEEEEehhHH
Confidence 999988888889999999999999998765544332 22 222457889999999997
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.04 E-value=1.8e-09 Score=80.08 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=92.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC-----------CCCCCccccceeE---------------EEEEEE--------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-----------FDPTSKVTVGASF---------------LSQTIA-------- 76 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~~~~~---------------~~~~~~-------- 76 (200)
.+...|.|.|.||+|||||+..|.... .+|.++.+.+.-. +.+...
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 345579999999999999999986532 1233332222111 111110
Q ss_pred ---------ecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEe
Q 028986 77 ---------LQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147 (200)
Q Consensus 77 ---------~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 147 (200)
..+...+.+.|++|.|--+.. -....-+|.++++.=..-.+..+.++.-+..+. =++|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEe
Confidence 012222478888888743211 122344899999988777766666655444332 368899
Q ss_pred CCCCCCCCcCCHHHH--HHHHH------HcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 148 KADLHEKREVPAQDG--IEYAE------KNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 148 K~D~~~~~~~~~~~~--~~~~~------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
|.|....+....+.. .++.. .+.-+++.+|+..|+|++++++.|.+...
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 999644321111111 11111 12447999999999999999999987654
No 324
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=1.1e-09 Score=75.85 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=64.9
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (200)
|..++.+.++++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+..... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 45567778889999999999987532221 12222222 23678999999999853221 11111233445678999
Q ss_pred ecCCCCCCHHHHHHHHHHhhc
Q 028986 176 TSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+|++++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999988764
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.02 E-value=2.1e-10 Score=83.78 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=84.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC-----------CCCCCcccc---------------ceeEEEEEEEec------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-----------FDPTSKVTV---------------GASFLSQTIALQ------ 78 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~---------------~~~~~~~~~~~~------ 78 (200)
.+.+.|.|.|+||+|||||++.|...- .+|.++.+. ....+.+.....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 356789999999999999999996421 122211111 111222222110
Q ss_pred -----------CCcEEEEEEEeCCC--hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEE
Q 028986 79 -----------DSTTVKFEIWDTAG--QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145 (200)
Q Consensus 79 -----------~~~~~~~~l~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv 145 (200)
+...+.+.+++|.| |.+. ....-+|.+++|.-+...+..+.++.-+.++. =++|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~v 173 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEE
Confidence 11124788888877 3332 22345899999999887766655544333332 3688
Q ss_pred EeCCCCCCCCcCCHHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 146 GNKADLHEKREVPAQDGIEYAEK-------NGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 146 ~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
+||.|....... ..+.+..... +..+++.+||..+.|++++++.|.+..
T Consensus 174 VNKaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 174 VNKADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EE--SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999995433221 1222222221 235899999999999999999987754
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=2.8e-09 Score=76.16 Aligned_cols=94 Identities=22% Similarity=0.163 Sum_probs=65.6
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcC
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNG 170 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 170 (200)
+...+..+++.+|++++|+|++++..- |...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 467788899999999999999875311 11222222 34679999999999865322 233333333 2233
Q ss_pred C---eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 171 M---FFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 171 ~---~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
. .++++|++++.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999999988763
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=99.02 E-value=3.4e-09 Score=82.23 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=68.6
Q ss_pred hhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986 97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (200)
..+....+.++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+....+ .+...+.+..++..++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 445556689999999999998765 3445567766553 34789999999999964322 12223344567889999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 028986 176 TSAKTADNINQLFEVLITC 194 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~ 194 (200)
+|++++.|++++++.|...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988654
No 328
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.98 E-value=1.4e-09 Score=86.25 Aligned_cols=158 Identities=20% Similarity=0.354 Sum_probs=114.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
-.++|+.|+|..++|||+|+++++.+.|.+...+ .+..+ .+++.. ++....+.+.|.+|... ..|...+|++
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv-~gqs~lLlirdeg~~~~-----aQft~wvdav 99 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVV-DGQSHLLLIRDEGGHPD-----AQFCQWVDAV 99 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEe-eccceEeeeecccCCch-----hhhhhhccce
Confidence 4678999999999999999999999887655443 22233 333333 44446778888887443 4566678999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHH-cCCeEEEecCCCCCCHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLH--EKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQ 186 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~ 186 (200)
|+||...+..+++.+..+...+.... ...+|.++++++.-.. ..+.+.++...+++.. ..+.+|+.++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999998877766665332 4467778877764432 2344555555555554 467899999999999999
Q ss_pred HHHHHHHhhc
Q 028986 187 LFEVLITCTS 196 (200)
Q Consensus 187 ~~~~i~~~~~ 196 (200)
+|+.+..++.
T Consensus 180 vf~~~~~k~i 189 (749)
T KOG0705|consen 180 VFQEVAQKIV 189 (749)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 329
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.96 E-value=4e-09 Score=80.04 Aligned_cols=89 Identities=21% Similarity=0.195 Sum_probs=68.5
Q ss_pred ccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986 100 APLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.+..+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+....+ ...........+.+++.+|+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSA 146 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEEC
Confidence 344588999999999999887 778888888776543 688999999999865421 12223334557889999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028986 179 KTADNINQLFEVLIT 193 (200)
Q Consensus 179 ~~~~~i~~~~~~i~~ 193 (200)
+++.|+++++.+|..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999988764
No 330
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.4e-08 Score=76.53 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=52.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEe---------------cCCcEEEEEEEeCCCh----
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL---------------QDSTTVKFEIWDTAGQ---- 93 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~D~~g~---- 93 (200)
.+++.|+|.|++|||||+|+++.........|..+.+...-.+.+ ....+..++++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 468999999999999999999987643222222222211111111 1123468899999983
Q ss_pred hhhhhccccc---ccCccEEEEEEeCC
Q 028986 94 ERYAALAPLY---YRGAAVAVVVYDIT 117 (200)
Q Consensus 94 ~~~~~~~~~~---~~~~d~~i~v~d~~ 117 (200)
.+-..+-..| ++++|+++-|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 1222233333 56799999999976
No 331
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=8.4e-09 Score=82.56 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
....+.++-++|+||||+||||||+.|...-.. .+......+.+ +..+...+++++++|.. .... ....+-
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiT--vvsgK~RRiTflEcp~D--l~~m-iDvaKI 133 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPIT--VVSGKTRRITFLECPSD--LHQM-IDVAKI 133 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceE--EeecceeEEEEEeChHH--HHHH-HhHHHh
Confidence 334466788889999999999999999885321 12222222222 23455578999999943 2222 233455
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCCHHHHHHHH----HH--cCCeEEEecCC
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYA----EK--NGMFFIETSAK 179 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~----~~--~~~~~~~~S~~ 179 (200)
+|.+++++|.+-.-.++.+. |++.+..+ +.| ++-|+++.|+..........-..+. .+ .|+++|.+|..
T Consensus 134 aDLVlLlIdgnfGfEMETmE-FLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETME-FLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred hheeEEEeccccCceehHHH-HHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 89999999998764444433 55555544 444 7788899999765432222212111 11 27788988865
Q ss_pred CC
Q 028986 180 TA 181 (200)
Q Consensus 180 ~~ 181 (200)
.+
T Consensus 210 ~n 211 (1077)
T COG5192 210 EN 211 (1077)
T ss_pred cc
Confidence 53
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.93 E-value=4.2e-09 Score=80.36 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=65.1
Q ss_pred cccCccEEEEEEeCCCHHhHH-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
...++|.+++|+|+.++.... .+..|+..+.. .++|+++|+||+|+....+ ......+.....+.+++++|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 458999999999998876543 34677766653 3688999999999863322 122334555667889999999999
Q ss_pred CCHHHHHHHHHH
Q 028986 182 DNINQLFEVLIT 193 (200)
Q Consensus 182 ~~i~~~~~~i~~ 193 (200)
.|++++++.|..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988753
No 333
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.92 E-value=7.4e-08 Score=76.36 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=77.9
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh----------HHHHHHHHHHH-HHcCCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS----------FNKAQYWVKEL-QKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~ 151 (200)
..+.++|++|+...+..|.+++.+++++|||+++++.+. +.....++..+ ......+.|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 678999999999899999999999999999999874322 32223333333 3233457999999999998
Q ss_pred CC------C-----------C-cCCHHHHHHHHHHc------------CCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 152 HE------K-----------R-EVPAQDGIEYAEKN------------GMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 152 ~~------~-----------~-~~~~~~~~~~~~~~------------~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
.. . . .-..+.+..+.... .+.+..++|.+..++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 31 1 0 12344555554431 12456889999999999999887753
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=1e-08 Score=79.46 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=68.6
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCeEEEecCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
...++|.+++|++.....++..+..|+.... ..++|+++|+||+|+....+. ......+.....+.+++++|++++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3577999999999987788888888877554 346889999999999654221 112223344567889999999999
Q ss_pred CCHHHHHHHHHHhh
Q 028986 182 DNINQLFEVLITCT 195 (200)
Q Consensus 182 ~~i~~~~~~i~~~~ 195 (200)
.|+++++++|...+
T Consensus 194 ~GideL~~~L~~ki 207 (347)
T PRK12288 194 EGLEELEAALTGRI 207 (347)
T ss_pred cCHHHHHHHHhhCC
Confidence 99999999987653
No 335
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.88 E-value=2.9e-08 Score=72.24 Aligned_cols=151 Identities=18% Similarity=0.146 Sum_probs=92.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 107 (200)
++.++|-|.+|||||+..|.+-..+............+....+ ...++++.|.||.-+ .........+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y---~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY---KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec---cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 7999999999999999999885432222211111111111112 224799999999422 123444556779
Q ss_pred cEEEEEEeCCCHHhHHHH-HHHHH----------------------------------------HHHHc-----------
Q 028986 108 AVAVVVYDITSPDSFNKA-QYWVK----------------------------------------ELQKH----------- 135 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~-~~~~~----------------------------------------~i~~~----------- 135 (200)
+.+++|+|+..+-+-..+ ++.++ ..+.+
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 999999998876544322 22222 00000
Q ss_pred ----------CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 136 ----------GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 136 ----------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
....+|++.+.||+|...-+ +..-. +.+ ..+++|+..++|++++++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiE-----ELdii---~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIE-----ELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeee-----cccee---eeccceeecccccccchHHHHHHHhhcch
Confidence 11257888899999964332 22111 223 3789999999999999998877653
No 336
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.8e-08 Score=77.26 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=89.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC--------C--------------CCCCccccceeEEEEEEEecCCcEEEEEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--------F--------------DPTSKVTVGASFLSQTIALQDSTTVKFEIW 88 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (200)
.++-..+|+-+|.+|||||-..|+--- . .......+..+.+...+.+. ...+.+.
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~---~~~iNLL 86 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA---DCLVNLL 86 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC---CeEEecc
Confidence 344468999999999999998886310 0 00011222333444444443 3689999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (200)
Q Consensus 89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 168 (200)
||||++++..=...-+..+|..+.|+|+...-.- ...++++..+ ..++||+-++||.|..... +.+.+.+.-+.
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcr---lR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~ 160 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCR---LRDIPIFTFINKLDREGRD--PLELLDEIEEE 160 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHh---hcCCceEEEeeccccccCC--hHHHHHHHHHH
Confidence 9999998887777778889999999999876322 2234444444 4489999999999975432 34555555555
Q ss_pred cCCeEEE
Q 028986 169 NGMFFIE 175 (200)
Q Consensus 169 ~~~~~~~ 175 (200)
+++..++
T Consensus 161 L~i~~~P 167 (528)
T COG4108 161 LGIQCAP 167 (528)
T ss_pred hCcceec
Confidence 5554333
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.85 E-value=6.5e-09 Score=76.27 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=91.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA 98 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 98 (200)
+..+.++++.|.+++|||||+|.++....-..... ..+.+.....+.+. -.+.++|.|| ..++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~----~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG----KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc----ceEEEEecCCcccccCCccCcchHhH
Confidence 46678999999999999999999998654322222 22222222222221 3789999999 223444
Q ss_pred cccccccCcc---EEEEEEeCCCHHh-H-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc----CCHHHHHH-----
Q 028986 99 LAPLYYRGAA---VAVVVYDITSPDS-F-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----VPAQDGIE----- 164 (200)
Q Consensus 99 ~~~~~~~~~d---~~i~v~d~~~~~s-~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~----- 164 (200)
....|+.+-+ -+++++|++.+-. . .....| +- ..++|+.+|+||+|...... .....+..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~---~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW---LG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH---Hh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 5555544332 4566777775411 1 111223 22 44899999999999743211 01111111
Q ss_pred --HHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986 165 --YAEKNGMFFIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 165 --~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
.+-....+++.+|+.++.|+++++-.|.+.
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhhh
Confidence 111224467889999999999988766553
No 338
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=8.9e-08 Score=78.11 Aligned_cols=147 Identities=14% Similarity=0.193 Sum_probs=86.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeE----------------------------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF---------------------------------------- 70 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 70 (200)
....||+|.|..++||||++|+++..+.-|.........+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4567999999999999999999987543222111110000
Q ss_pred ---EEEEEEecCCcE----EEEEEEeCCChh---hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCC
Q 028986 71 ---LSQTIALQDSTT----VKFEIWDTAGQE---RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI 140 (200)
Q Consensus 71 ---~~~~~~~~~~~~----~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 140 (200)
....+..++... -.+.++|.||.+ +...-...+..++|++|+|.++.+..+... +.|+....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence 011111111100 157789999943 344555667788999999999887754443 4454544433 45
Q ss_pred eEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--------CeEEEecCCCC
Q 028986 141 VMALVGNKADLHEKREVPAQDGIEYAEKNG--------MFFIETSAKTA 181 (200)
Q Consensus 141 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~~~ 181 (200)
.+.|+.||+|...+++.-.+.+.+-..++. -.++.+|++.-
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 578888999986553332233333222222 23788886543
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.81 E-value=1.3e-08 Score=69.16 Aligned_cols=54 Identities=30% Similarity=0.319 Sum_probs=37.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
+++++|.+|+|||||+|+|.+........ ..+.+.....+.+.. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP----TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC----CEEEEECCCc
Confidence 89999999999999999999876543222 233333333344422 4799999994
No 340
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.9e-08 Score=72.86 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=93.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcC----------CCC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG----------QFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
.+..+||..+|+-.=|||||-.+++.- .|. .......+.+.....+.+.... ..+-..|+||+.+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~-rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN-RHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC-ceEEeccCCChHH
Confidence 466789999999999999999888641 111 1111223344444444443333 5788899999999
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcCC
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNGM 171 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 171 (200)
|-.....-..+.|+.|+|+.+.+.- +.+.+..+...+ ..++| +++++||+|+.++.+. ...+.+++..++++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 9888777778899999999998742 112222222222 33665 6777899999875432 33455667777755
Q ss_pred -----eEEEecCCC
Q 028986 172 -----FFIETSAKT 180 (200)
Q Consensus 172 -----~~~~~S~~~ 180 (200)
|++.-|+..
T Consensus 164 ~gd~~Pii~gSal~ 177 (394)
T COG0050 164 PGDDTPIIRGSALK 177 (394)
T ss_pred CCCCcceeechhhh
Confidence 466656544
No 341
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.2e-08 Score=72.15 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-c--ccccccCccEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-L--APLYYRGAAVA 110 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~--~~~~~~~~d~~ 110 (200)
.+|+++|...|||||+-+..+.. ..|+...-.+.+.....-.+.+ .-+.+.+||.||+-.+-. . ....++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45999999999999987655543 2222211111111000001111 236799999999854332 1 23457889999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHH--HH-----HHHHH----HcCCeEEEec
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQ--DG-----IEYAE----KNGMFFIETS 177 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~--~~-----~~~~~----~~~~~~~~~S 177 (200)
++|+|+-+. -++.+..+...+.+.- ++++.+=+.+.|.|...+...... .+ ..++. ...+.++-+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999998654 2344444433343322 667888899999998654211110 01 11111 1123455555
Q ss_pred CCCCCCHHHHHHHHHHhhccc
Q 028986 178 AKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~~~~ 198 (200)
.. ..++-+.|..+++++...
T Consensus 185 Iy-DHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhh
Confidence 55 566888898888887654
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.80 E-value=2.3e-08 Score=69.28 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=37.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
..++|+++|.+|+|||||+|+|.+........ ..+.+.....+...+ .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~----~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK----RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC----CEEEEECcC
Confidence 45789999999999999999999865433322 233333333323221 378999998
No 343
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.79 E-value=2e-08 Score=70.42 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=40.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
...++++++|.||+|||||+|+|.+....... ...+.+.....+... ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~----~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD----KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC----CCEEEEECcC
Confidence 44589999999999999999999997653332 233444433333332 2588999998
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=5.3e-08 Score=76.23 Aligned_cols=95 Identities=26% Similarity=0.277 Sum_probs=68.5
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHH
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEK 168 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~ 168 (200)
.+++......+.+.++++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.... ...+.+. ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 5677888888889999999999987643 22334443332 257899999999996532 2233333 34556
Q ss_pred cCC---eEEEecCCCCCCHHHHHHHHHHh
Q 028986 169 NGM---FFIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 169 ~~~---~~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998764
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.2e-08 Score=68.56 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=57.5
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
.++.+|++++|+|++++... ....+...+... ..+.|+++|+||+|+....+ .......+.+.+....+.+|++.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence 46779999999999986321 112222333322 34589999999999864322 1122222222223335789999999
Q ss_pred CHHHHHHHHHHhh
Q 028986 183 NINQLFEVLITCT 195 (200)
Q Consensus 183 ~i~~~~~~i~~~~ 195 (200)
+++++++.|.+.+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987654
No 346
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.73 E-value=1.5e-06 Score=59.13 Aligned_cols=148 Identities=19% Similarity=0.286 Sum_probs=81.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCC-C-----------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA-G----------------- 92 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g----------------- 92 (200)
+..++|.|.|+||||||||+.++.+......+. .+- +...++. .++...-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k--vgG-f~t~EVR-~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK--VGG-FITPEVR-EGGKRIGFKIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCce--eee-EEeeeee-cCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence 457899999999999999999988643222111 111 1122222 23333455666655 2
Q ss_pred -------hh-hhhhcccccccCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH
Q 028986 93 -------QE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI 163 (200)
Q Consensus 93 -------~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 163 (200)
.+ ......+..++.+|++| +|--.+ ++.. +.|...+.+.-..+.|++.++.+.+... .++
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P-------~v~ 147 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP-------LVQ 147 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh-------HHH
Confidence 11 11122333445567654 565544 3322 5555666665567888888887766311 122
Q ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 164 EYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 164 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++ +..+..++. .+..|-+.++..|+..+..
T Consensus 148 ~i-k~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 148 RI-KKLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred Hh-hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 22 233433333 4455555888888887754
No 347
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.71 E-value=1.9e-06 Score=67.34 Aligned_cols=155 Identities=18% Similarity=0.237 Sum_probs=91.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCC--------------Ccccc-------ceeE---EEEEEEecCCcEEEEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPT--------------SKVTV-------GASF---LSQTIALQDSTTVKFEIW 88 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~-------~~~~---~~~~~~~~~~~~~~~~l~ 88 (200)
.+=|.|+||-.+||||||++|...-.-|+ .++.. ...+ ....+.+.++..++++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 45589999999999999999975321110 11111 1111 122355667777899999
Q ss_pred eCCCh-------------hhh-hhcc---------------ccccc--CccEEEEEEeCC----CHHhHHHH-HHHHHHH
Q 028986 89 DTAGQ-------------ERY-AALA---------------PLYYR--GAAVAVVVYDIT----SPDSFNKA-QYWVKEL 132 (200)
Q Consensus 89 D~~g~-------------~~~-~~~~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~~i 132 (200)
|+.|- +++ ..-| ...++ ..=++++.-|.+ .++.+..+ .+.++.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99980 110 0111 11121 123777777776 34445443 4455555
Q ss_pred HHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC--CCHHHHHHHHH
Q 028986 133 QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA--DNINQLFEVLI 192 (200)
Q Consensus 133 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~i~~~~~~i~ 192 (200)
+.. ++|+++++|-.+-... ...+...++..+++++++++++..- .++..+++.++
T Consensus 177 k~i---gKPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh---CCCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 544 8889999999885432 2355666777788999888877643 34555554443
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.2e-07 Score=72.52 Aligned_cols=167 Identities=16% Similarity=0.230 Sum_probs=102.5
Q ss_pred ccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------------CccccceeEEEEEEE
Q 028986 20 NLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----------------------SKVTVGASFLSQTIA 76 (200)
Q Consensus 20 ~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 76 (200)
.+-..-+.++...+++++++|.-.+|||||+-.|..++.+.- .....+.+..-..+.
T Consensus 154 VLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVN 233 (591)
T KOG1143|consen 154 VLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVN 233 (591)
T ss_pred hhhhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccc
Confidence 333444556678899999999999999999988876543211 001111111111111
Q ss_pred ec---------CCcEEEEEEEeCCChhhhhhcccccccC--ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEE
Q 028986 77 LQ---------DSTTVKFEIWDTAGQERYAALAPLYYRG--AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145 (200)
Q Consensus 77 ~~---------~~~~~~~~l~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv 145 (200)
+. +...--++++|.+|+..|.....+.+.. .|..++++.+.....+.. +..+..+.. .++|++++
T Consensus 234 Y~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvl 309 (591)
T KOG1143|consen 234 YAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVL 309 (591)
T ss_pred hhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEE
Confidence 11 1122368999999999988766554443 588889998887644332 233344443 38999999
Q ss_pred EeCCCCCCCCc------------------------CCHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHH
Q 028986 146 GNKADLHEKRE------------------------VPAQDGIEYAEKN----GMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 146 ~nK~D~~~~~~------------------------~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|.|+..... ...+++...+.+. =.|+|-+|+..|++++-+...
T Consensus 310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred EEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 99999964311 1123333333332 237889999999998765443
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=7.2e-08 Score=67.74 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=40.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
...++++++|.+++|||||+|+|.+..+... ....+.+.....+.+. ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~----~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS----PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec----CCEEEEECCCC
Confidence 3457899999999999999999998765322 2223334433334442 25789999984
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=5.4e-08 Score=69.54 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCC-------CCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDP-------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
..+++++|.+|+|||||+|+|.+..... ......+++.....+.... .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~----~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN----GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC----CCEEEeCcC
Confidence 3579999999999999999999854311 1222234444444444422 479999998
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1.2e-07 Score=71.73 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=40.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
...++++|+|.||+|||||+|+|.+........ ..+.+.....+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~----~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD----GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC----CEEEEECCCc
Confidence 346899999999999999999999875433322 233333333333321 4789999995
No 352
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=1.5e-07 Score=65.08 Aligned_cols=83 Identities=18% Similarity=0.047 Sum_probs=54.2
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+....+. .+....+....+..++.+|++++.+++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754432 12221 1122346899999999998543210 11112232334557899999999999999
Q ss_pred HHHHHHh
Q 028986 188 FEVLITC 194 (200)
Q Consensus 188 ~~~i~~~ 194 (200)
++.|.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9998764
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.64 E-value=1.5e-07 Score=71.53 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=40.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
...++++|+|.||+|||||+|+|.+...... ....+.+.....+... ..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~----~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLG----KGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeC----CcEEEEECCCc
Confidence 4568999999999999999999999764333 2233444433333332 24789999995
No 354
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.62 E-value=1.1e-06 Score=64.37 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=65.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCCCc---cccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSK---VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------AL 99 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~ 99 (200)
.+..-|.|+|++++|||+|+|.|++. .+..... .|.+.-. .......+....+.++||+|..... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~--~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWM--WSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEE--EeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 44567889999999999999999997 4432222 1111111 1111211233689999999954221 11
Q ss_pred ccccccC--ccEEEEEEeCCCH-HhHHHHHHHHHHH---------HHcCCCCCeEEEEEeCCCC
Q 028986 100 APLYYRG--AAVAVVVYDITSP-DSFNKAQYWVKEL---------QKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 100 ~~~~~~~--~d~~i~v~d~~~~-~s~~~~~~~~~~i---------~~~~~~~~p~iiv~nK~D~ 151 (200)
....+.. +|++||..+.... ...+.+....+.. .........+++|+...++
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 1222333 7889988887743 3333333333211 1122333446777766555
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=1.5e-07 Score=66.13 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCChh-hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986 90 TAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (200)
Q Consensus 90 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 168 (200)
.||+- +........++++|++++|+|++.+..... ..+...+ .+.|+++|+||+|+..... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 35542 333445667888999999999987643211 1122211 2468999999999853321 1112233333
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 169 NGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 169 ~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
....++.+|++++.|++++.+.|.+.+
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 455689999999999999999988764
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=72.72 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=44.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
...++++|+|.|++|||||||+|.+..... .....+.+.....+...++ +.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~----i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG----IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC----eEEecCCCc
Confidence 345789999999999999999999977633 3334466666666666553 899999993
No 357
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.59 E-value=1.7e-07 Score=72.76 Aligned_cols=84 Identities=14% Similarity=-0.000 Sum_probs=54.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhhh--
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQERY-- 96 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~-- 96 (200)
+++.|+|.|++|||||+++|++... .....+..+.......+.+++. .+.++.+.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999765 3322222222222222333221 2347899999994321
Q ss_pred --hh---cccccccCccEEEEEEeCC
Q 028986 97 --AA---LAPLYYRGAAVAVVVYDIT 117 (200)
Q Consensus 97 --~~---~~~~~~~~~d~~i~v~d~~ 117 (200)
.. ..-..++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11 2222467899999999985
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.59 E-value=2.3e-07 Score=64.12 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=37.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
...+++++|.+++|||||+|+|.+..... ..++.+.+.....+.. + ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~-~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKI-T---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEc-C---CCEEEEECcC
Confidence 45689999999999999999999765332 2334444332222222 2 2589999998
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.54 E-value=1.1e-07 Score=65.40 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++++|++|||||||+|.|....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999999964
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=3e-07 Score=63.53 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=37.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
....+++++|.+|+|||||+|.|.+........ ..+.+......... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~~~----~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVKLD----NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEEec----CCEEEEECCC
Confidence 356789999999999999999999865322211 11222222223332 2589999998
No 361
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.54 E-value=2e-06 Score=66.29 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=96.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--------------cccceeEEEEEEEecCCcEE-----------
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------------VTVGASFLSQTIALQDSTTV----------- 83 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~----------- 83 (200)
..+..+.|.+.|+-+.|||||+-.|..+..+.-.. .....+.+.....+.+++.+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567889999999999999998886543211100 11112222222333333222
Q ss_pred ---------EEEEEeCCChhhhhhcc--cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 84 ---------KFEIWDTAGQERYAALA--PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 84 ---------~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
-+.++|+.|++.|.... ..+-++.|..++++.+++.-+--. +..+..+. .-+.|+++++||+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEecccC
Confidence 57799999999887543 334567999999999988632211 22222222 3478999999999996
Q ss_pred CCCcCC--HHHHH----------------------HHHHHc---CCeEEEecCCCCCCHHHHHHHHHH
Q 028986 153 EKREVP--AQDGI----------------------EYAEKN---GMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 153 ~~~~~~--~~~~~----------------------~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
.+.... .+++. ..+.+. -+|+|.+|+-+|.|++-+.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 431110 01111 111111 247999999999998766555443
No 362
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=5.5e-07 Score=80.29 Aligned_cols=114 Identities=21% Similarity=0.157 Sum_probs=69.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC------ccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALA 100 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~ 100 (200)
=.+|+|++|+||||+++.- +..++-.. ....+.+.. ..+-+.+ +-.++||+|.. .....|
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~----~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD----EAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC----CEEEEcCCCccccCCCcccccHHHH
Confidence 4689999999999999876 43332211 001111111 1111212 45689999921 122234
Q ss_pred cccc---------cCccEEEEEEeCCCHH-----hH----HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 101 PLYY---------RGAAVAVVVYDITSPD-----SF----NKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 101 ~~~~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
..++ +..|++|+++|+.+-. .. ..++..+..+.+......|+.+|+||+|+...
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 3332 4489999999987431 11 24455566666666889999999999998654
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=3.9e-07 Score=68.91 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCChh-hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986 90 TAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (200)
Q Consensus 90 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 168 (200)
.|||- .........+..+|++++|+|+..+.+... ..+...+ .+.|+++|+||+|+..... .....+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 35653 223445667888999999999987643321 1111112 2578999999999854221 1111222333
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 169 NGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 169 ~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.+.+++.+|++.+.++.++.+.|.+.+.+
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 45678999999999999999998877653
No 364
>PRK14974 cell division protein FtsY; Provisional
Probab=98.49 E-value=2.8e-07 Score=71.08 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=55.2
Q ss_pred EEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.+.++||+|.... ......+ ..+.|.+++|+|+.... ..+.+..|...+ + .--+|+||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~-~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------G-IDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------C-CCEEEEeeecCCCCc
Confidence 46899999995321 1111121 12468889999998653 233333332211 1 145778999974322
Q ss_pred cCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
-.+...+...+.|+.+++ +|++++++.
T Consensus 296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 ----GAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ----cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 234455556788988887 688887764
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=4.3e-07 Score=61.74 Aligned_cols=76 Identities=26% Similarity=0.311 Sum_probs=51.8
Q ss_pred ccccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
..++.+|++++|+|+.++.+.. .+..|+.. . ..+.|+++|+||+|+..... .....+.....+..++++|++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3567899999999998875433 33333332 2 24679999999999854322 223345555667789999999
Q ss_pred CCCC
Q 028986 180 TADN 183 (200)
Q Consensus 180 ~~~~ 183 (200)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=2e-06 Score=66.18 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=54.9
Q ss_pred EEEEEEeCCChhh--------hhhcc---cc-cccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986 83 VKFEIWDTAGQER--------YAALA---PL-YYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (200)
Q Consensus 83 ~~~~l~D~~g~~~--------~~~~~---~~-~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 149 (200)
+.+.++||||... ..... .. .-...+..++|+|++.. +.+..+..+...+ -+.-+|+||.
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~-------~~~giIlTKl 269 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV-------GLTGIILTKL 269 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC-------CCCEEEEECC
Confidence 5799999999532 11111 11 12346788999999964 2333333322111 1246788999
Q ss_pred CCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|.... .-.+...+...++|+.+++ +|++++++
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 95322 2244555667799999888 67777665
No 367
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.46 E-value=5.5e-07 Score=69.10 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=97.6
Q ss_pred CCccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCC------------------CCCCccccceeEE--------
Q 028986 18 LNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF------------------DPTSKVTVGASFL-------- 71 (200)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~-------- 71 (200)
...+......+....+++|+|+|.-.+|||||+-.|...+. ..-...+.+.+..
T Consensus 118 ~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNv 197 (641)
T KOG0463|consen 118 EVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNV 197 (641)
T ss_pred eEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeecccccc
Confidence 33444555566778899999999999999999976654331 1111111221111
Q ss_pred ----------EEEEEecCCcEEEEEEEeCCChhhhhhcccccc--cCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCC
Q 028986 72 ----------SQTIALQDSTTVKFEIWDTAGQERYAALAPLYY--RGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSP 138 (200)
Q Consensus 72 ----------~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~ 138 (200)
...+.+.....--++++|..|++.|....-.-+ +-.|.-++++-++.. .-.+ +..+.... ..
T Consensus 198 VNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLAL---aL 272 (641)
T KOG0463|consen 198 VNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLAL---AL 272 (641)
T ss_pred ccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhh---hh
Confidence 111222222223578999999998876543332 235777777766543 1111 11111111 33
Q ss_pred CCeEEEEEeCCCCCCCCcCCHHHHH---H--------------------------HHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 139 DIVMALVGNKADLHEKREVPAQDGI---E--------------------------YAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 139 ~~p~iiv~nK~D~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
.+|+++|++|+|+...+.. .+..+ + |..+.-|++|.+|-.+|.|++-+.
T Consensus 273 ~VPVfvVVTKIDMCPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk- 350 (641)
T KOG0463|consen 273 HVPVFVVVTKIDMCPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK- 350 (641)
T ss_pred cCcEEEEEEeeccCcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-
Confidence 6788888899998654321 11111 1 111223578999999999987544
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
..+..+.-+
T Consensus 351 mFLNlls~R 359 (641)
T KOG0463|consen 351 MFLNLLSLR 359 (641)
T ss_pred HHHhhcCcc
Confidence 344444433
No 368
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.45 E-value=1.9e-06 Score=59.72 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=36.5
Q ss_pred EEEEEEeCCChhhhhhcc--------cccccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALA--------PLYYRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
....++|++|..+-.... ....-..|.+++++|+.+-.. ......+..++... =++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 577899999953211111 112334789999999875422 22223344444433 2578999995
No 369
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=7e-07 Score=73.81 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=76.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCC--------------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF--------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 97 (200)
..-+|+++.+-.=|||||+..|....- ......+.+.+....-+.... ..+.+.++|+||+-++.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHVDFS 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCccchh
Confidence 344899999999999999999986431 111112223322222223322 33789999999999999
Q ss_pred hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
........-+|++++++|+...-.-+.. ..+++....+..+++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence 9999999999999999999865322221 1222222334557899999994
No 370
>PRK01889 GTPase RsgA; Reviewed
Probab=98.42 E-value=1.3e-06 Score=68.35 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=59.7
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTA 181 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~ 181 (200)
...++|.+++|+++...-....+..++..+... +++.++|+||+|+....+ +....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 467899999999997544445566666665544 567789999999965411 11122221 34678999999999
Q ss_pred CCHHHHHHHHH
Q 028986 182 DNINQLFEVLI 192 (200)
Q Consensus 182 ~~i~~~~~~i~ 192 (200)
.|++++..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999988874
No 371
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=7.1e-07 Score=67.88 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=65.6
Q ss_pred eCCChhh-hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH
Q 028986 89 DTAGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE 167 (200)
Q Consensus 89 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 167 (200)
-.|||-. -.......+..+|++++|+|+..+.+... .++.... .+.|+++|+||+|+..... .+...++..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~ 77 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFE 77 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHH
Confidence 3567642 23444667888999999999987643221 1111111 1578999999999853211 112223333
Q ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 168 KNGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 168 ~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
..+.+++.+|++.+.+++++.+.|.+.+.+
T Consensus 78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 78 EQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 446778999999999999999988877643
No 372
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2e-07 Score=69.52 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=98.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCC---CCCC--Cccccc-----------------------------eeEEEEE
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ---FDPT--SKVTVG-----------------------------ASFLSQT 74 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~~--~~~~~~-----------------------------~~~~~~~ 74 (200)
.++..++|.-+|+-.-||||+++++.+-. |... .+.+.. .+.....
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 34678999999999999999998886521 0000 000000 0000000
Q ss_pred EEecCCc---EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCH----HhHHHHHHHHHHHHHcCCCCCeEEEEEe
Q 028986 75 IALQDST---TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----DSFNKAQYWVKELQKHGSPDIVMALVGN 147 (200)
Q Consensus 75 ~~~~~~~---~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~n 147 (200)
..-..+. -..+.+.|.||++-.....-.-..-.|++++++..+.. .+-+.+.. .+ +.+. ..++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-ve-iM~L----khiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-VE-IMKL----KHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-HH-Hhhh----ceEEEEec
Confidence 0000110 13678999999986655444334446888888877643 33333221 11 1111 23889999
Q ss_pred CCCCCCCCcC--CHHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 148 KADLHEKREV--PAQDGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 148 K~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
|+|+..+.+. ..+++.+|.+. .++|++++||.-..|++-+.++|++++.
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9999765332 23455556554 3679999999999999999999998874
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.41 E-value=6.4e-07 Score=69.64 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=34.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCcccc----c--eeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV----G--ASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
++|+|++|||||||+|+|.+........... + ++.....+.+..+. .++||||..+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~----~liDTPGir~ 269 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG----DLIDSPGVRE 269 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC----EEEECCCCCc
Confidence 7899999999999999999864322211111 1 12222223333332 4899999654
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.39 E-value=2.4e-06 Score=64.35 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEEEeCCChhhhhhc-----------cc-ccccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986 83 VKFEIWDTAGQERYAAL-----------AP-LYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~-----------~~-~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 149 (200)
+.+.++||||....... .. ..-..+|.+++|+|++.. +.+.....+...+ . +.-+|+||.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~----~---~~g~IlTKl 227 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV----G---LTGIILTKL 227 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC----C---CCEEEEEcc
Confidence 57899999995422111 11 112247899999999854 3333333332211 1 246788999
Q ss_pred CCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
|....- -.+.......+.|+.+++ +|++++++-
T Consensus 228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 964332 234555556688888888 677676653
No 375
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.38 E-value=2e-05 Score=63.51 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=56.6
Q ss_pred EEEEEEeCCC-------------hhhhhhcccccccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986 83 VKFEIWDTAG-------------QERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNK 148 (200)
Q Consensus 83 ~~~~l~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK 148 (200)
-++.+.|.|| .+.......+++.+.+++|+|+--.+-+.- ..+.. .+.+....+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTD---LVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTD---LVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHH---HHHhcCCCCCeeEEEEee
Confidence 3788999999 233345667889999999999854432111 12222 233344557779999999
Q ss_pred CCCCCCCcCCHHHHHHHHHH
Q 028986 149 ADLHEKREVPAQDGIEYAEK 168 (200)
Q Consensus 149 ~D~~~~~~~~~~~~~~~~~~ 168 (200)
.|+.+.+-.....+++....
T Consensus 489 VDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred cchhhhccCCHHHHHHHHhc
Confidence 99988777777777777654
No 376
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=66.07 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=54.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEe--------------cCCcEEEEEEEeCCChh--
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--------------QDSTTVKFEIWDTAGQE-- 94 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~D~~g~~-- 94 (200)
.+.+++.|+|.|++|||||+|+|+.....+...|..+.+...-.+.+ ....+..++++|++|.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36779999999999999999999987654333333333222222222 12345689999999831
Q ss_pred --hhhhccccc---ccCccEEEEEEeCC
Q 028986 95 --RYAALAPLY---YRGAAVAVVVYDIT 117 (200)
Q Consensus 95 --~~~~~~~~~---~~~~d~~i~v~d~~ 117 (200)
.-..+-..| ++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 112222222 46688888887754
No 377
>PRK12289 GTPase RsgA; Reviewed
Probab=98.36 E-value=9.4e-07 Score=68.76 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQF 58 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~ 58 (200)
++|+|++|||||||||+|.+...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccc
Confidence 79999999999999999997643
No 378
>PRK13695 putative NTPase; Provisional
Probab=98.34 E-value=1.9e-05 Score=55.63 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=44.7
Q ss_pred cccccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 101 PLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
...+..+++ +++|--.+ +... ..+.+.+......+.|++++.+|... ......+....+..++++
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---
Confidence 334556676 57784211 1111 22333333333446789999987532 123344444556777777
Q ss_pred CCCCHHHHHHHHHHhhc
Q 028986 180 TADNINQLFEVLITCTS 196 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~ 196 (200)
+.+|-+++...+++.++
T Consensus 157 ~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 TPENRDSLPFEILNRLK 173 (174)
T ss_pred cchhhhhHHHHHHHHHh
Confidence 44555588888777653
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=4.8e-06 Score=65.41 Aligned_cols=94 Identities=27% Similarity=0.300 Sum_probs=60.9
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHHcC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEKNG 170 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~~ 170 (200)
.+...........+.+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+... ....+.+. .+++..+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 44444444433344999999998742 22333444332 25689999999999643 22223333 3355556
Q ss_pred C---eEEEecCCCCCCHHHHHHHHHHhh
Q 028986 171 M---FFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 171 ~---~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
+ .++.+||+++.|++++++.|.+..
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5 589999999999999999997653
No 380
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=9.2e-06 Score=61.72 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=93.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcC----------CCCCC----CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRG----------QFDPT----SKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
-...+..+||.-+|+-.=|||||-.++..- +|+.. .....+.+...-.+.+.... .++-=.|+||
T Consensus 48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~-RhYaH~DCPG 126 (449)
T KOG0460|consen 48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAK-RHYAHTDCPG 126 (449)
T ss_pred cccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccc-cccccCCCCc
Confidence 344577889999999999999998877531 11110 11222333333334443222 4566789999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc---CCHHHHHHHHHHc
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE---VPAQDGIEYAEKN 169 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~ 169 (200)
+.+|-.....-..+-|+.|+|+.+.+.. +.+.+..+...++..- ..+++.+||.|+.++.+ ..+-+++++..++
T Consensus 127 HADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 127 HADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEF 203 (449)
T ss_pred hHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence 9999888888788899999999999853 3333443333343321 33788889999975433 3345556666666
Q ss_pred C-----CeEEEecC
Q 028986 170 G-----MFFIETSA 178 (200)
Q Consensus 170 ~-----~~~~~~S~ 178 (200)
+ +|++.=||
T Consensus 204 gf~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 204 GFDGDNTPVIRGSA 217 (449)
T ss_pred CCCCCCCCeeecch
Confidence 4 36776554
No 381
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.30 E-value=3.8e-06 Score=58.71 Aligned_cols=136 Identities=15% Similarity=0.230 Sum_probs=66.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeC-CCh--------------------
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT-AGQ-------------------- 93 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~-------------------- 93 (200)
||+|.|++|+|||||+++++....... .+. ..+....+. .++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v--~Gf~t~evr-~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v 76 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPV--GGFYTEEVR-ENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV 76 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGE--EEEEEEEEE-TTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Ccc--ceEEeeccc-CCCceEEEEEEECcCCCccccccccccccccCCCEEE
Confidence 689999999999999999987421111 111 112222222 3444445555565 331
Q ss_pred --hhhhhcccccc----cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH
Q 028986 94 --ERYAALAPLYY----RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE 167 (200)
Q Consensus 94 --~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 167 (200)
+.+.......+ ..+| ++++|--.+-.+ ....|.+.+...-..+.|++.++.+.-. .....++..
T Consensus 77 ~~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~-------~~~l~~i~~ 146 (168)
T PF03266_consen 77 DLESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSD-------NPFLEEIKR 146 (168)
T ss_dssp -HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred cHHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCC-------cHHHHHHHh
Confidence 11222222222 3445 777885543111 1123444444433567888888876620 113455666
Q ss_pred HcCCeEEEecCCCCCCH
Q 028986 168 KNGMFFIETSAKTADNI 184 (200)
Q Consensus 168 ~~~~~~~~~S~~~~~~i 184 (200)
..++.+++++......+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67888999887766554
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.29 E-value=1.5e-06 Score=68.29 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
.++.|+|.+|||||||+|+|...... .......+++.....+.+.++ ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~----~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG----SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC----cEEEECCCc
Confidence 47999999999999999999864311 111222334444444444332 479999995
No 383
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.27 E-value=2.1e-06 Score=67.32 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=36.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
.+++++|.+|+|||||+|+|.+.... .......+.+.....+...+ .+.++||||.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~----~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD----GHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC----CCEEEECCCC
Confidence 47999999999999999999985321 11222233333333333322 2579999994
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.26 E-value=2.3e-06 Score=63.60 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQF 58 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~ 58 (200)
.++++|++|+|||||+|+|.+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhh
Confidence 688999999999999999998643
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=2.2e-06 Score=64.39 Aligned_cols=57 Identities=26% Similarity=0.240 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQF------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
-.+++|++|+|||||+|+|..... .......--++.....+.++.+. .++||||..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCc
Confidence 467899999999999999987432 11111111222223334443344 4699999654
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.9e-05 Score=61.88 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=70.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC---CCccccceeE------------------EEEEEEe--------cCCcEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASF------------------LSQTIAL--------QDSTTVK 84 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~------------------~~~~~~~--------~~~~~~~ 84 (200)
-.++++|++|+||||++..|....... ....-...+. ....... ..-....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 368899999999999999997532100 0000000000 0000000 0112247
Q ss_pred EEEEeCCChhhhh----hccccc--ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCC
Q 028986 85 FEIWDTAGQERYA----ALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHEKR 155 (200)
Q Consensus 85 ~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~~~ 155 (200)
+.++||+|..... .....+ .....-.++|++++.. +.+..+..-+.......... -+-=+|+||.|....
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 8999999954221 111111 1223456889998864 44444432223222110000 123466799996432
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+...+...+.|+.+++.
T Consensus 297 ---~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 297 ---LGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ---ccHHHHHHHHHCcCeEEEec
Confidence 33455666666777665553
No 387
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2.4e-06 Score=66.49 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=83.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCC--------CCCCCc--------cccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--------FDPTSK--------VTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 95 (200)
+--+|.|+.+-.+||||.-.+++... .+.... ...+.+...--+.++... .++.++||||+-+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg-~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG-HRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc-ceEeeecCCCcce
Confidence 33489999999999999988876421 111111 111233333334444333 7899999999999
Q ss_pred hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
+.-..+..++--|+++.|||++..-.-+.+.-| ++..+.++|-...+||+|....
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhh
Confidence 988888999999999999999976444444444 5556778999999999997554
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.16 E-value=1.6e-05 Score=63.22 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=46.2
Q ss_pred EEEEEEeCCChhhhh----hccccc--ccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQERYA----ALAPLY--YRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.+.++||+|..... .....+ ..+.|-+++|+|+..... .+.+..| .+. -.+.-+|+||.|....-
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F----~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF----KDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH----Hhc---cCCcEEEEECccCCCCc
Confidence 689999999943211 111111 224688999999876532 2222222 211 12356789999964321
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
-.+.......+.|+.+++.
T Consensus 256 ----G~aLs~~~~t~~PI~fig~ 274 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFIGT 274 (429)
T ss_pred ----cHHhhhHHHHCCCeEEEcC
Confidence 1234444455666665543
No 389
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.16 E-value=3.7e-06 Score=66.89 Aligned_cols=58 Identities=26% Similarity=0.215 Sum_probs=43.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
+..+.|.+||.|||||||+||+|.+.+.-.. ..|.+-+....++.+.. .+.+.|+||.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~----~v~LCDCPGL 369 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP----SVCLCDCPGL 369 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC----CceecCCCCc
Confidence 3478999999999999999999999875433 34556665555555544 4788999993
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=6.7e-06 Score=62.88 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQF 58 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~ 58 (200)
.++++|++|+|||||+|+|.+...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 588999999999999999998643
No 391
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=8e-06 Score=60.42 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=41.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----cccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
...-.++|+-+|..|-|||||+..|++-.+..... +............- .+..+++++.||.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLtiv~tvG 104 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTIVDTVG 104 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEEEeecc
Confidence 34568899999999999999999999977643322 22222222222211 22347889999999
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=2.6e-05 Score=55.93 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=48.5
Q ss_pred EEEEEEeCCChhhhh----hcccccc--cCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQERYA----ALAPLYY--RGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.+.++||+|..... .....++ ...+-+++|++++.. +.++.+..++..+ . + -=+|+||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~--~-~~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G--I-DGLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S--T-CEEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c--C-ceEEEEeecCCCC-
Confidence 468999999942211 1111111 146789999999865 3334434333222 1 1 2356899995332
Q ss_pred cCCHHHHHHHHHHcCCeEEEecCC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
.-.+...+...+.|+-.++--
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it~G 176 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYITTG 176 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEESS
T ss_pred ---cccceeHHHHhCCCeEEEECC
Confidence 334566777788887776643
No 393
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=1.4e-05 Score=70.36 Aligned_cols=114 Identities=21% Similarity=0.167 Sum_probs=64.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCC--Cc--cccceeEEEEEEEecCCcEEEEEEEeCCCh--------hhhhhccccc
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPT--SK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQ--------ERYAALAPLY 103 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~ 103 (200)
.+|+|++|+||||++...-. .|+-. .. ............-+.+ +-.++||.|. +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~d----eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTD----EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCccccc----ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 57999999999999754322 22111 00 0001111111122222 4578999882 1223444433
Q ss_pred ---------ccCccEEEEEEeCCCHHh---H------HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 104 ---------YRGAAVAVVVYDITSPDS---F------NKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 104 ---------~~~~d~~i~v~d~~~~~s---~------~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
.+..|++|+.+|+++--+ . ..+..=+.++.+.-....|+++++||.|+...
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 456899999999874311 1 12233344555555778999999999999764
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=4.1e-05 Score=57.74 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=69.8
Q ss_pred hhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986 97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (200)
..+...-..+.|-+++++.+.+|+ +...+.+++-..... ++..++|+||+|+....+...++........+.+++.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 344455555677778888887764 556666665555443 6667888999999876554334566677778999999
Q ss_pred ecCCCCCCHHHHHHHHHHhh
Q 028986 176 TSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~ 195 (200)
+|++++.++.++..++...+
T Consensus 147 ~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 147 VSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred ecCcCcccHHHHHHHhcCCe
Confidence 99999999999998876553
No 395
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.09 E-value=4.4e-06 Score=60.21 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=75.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH----------hHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD----------SFNKAQYWVKELQKHG-SPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~ 151 (200)
+.+.+.|.+|+...+..|.+.+.+...+++++.++..+ -++.-..++..+.... ..+.++|+.+||.|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 56789999999988899999999888888877666432 2333333444443332 456789999999999
Q ss_pred CCCC----------------cCCHHHHHHHHHHc----CC------eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 152 HEKR----------------EVPAQDGIEYAEKN----GM------FFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 152 ~~~~----------------~~~~~~~~~~~~~~----~~------~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.+++ ..+.+.+++|..+. +- .--.+.|.+..|+.-+|..+.+.+.+
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 6431 12233344444331 11 12457788899999999888776544
No 396
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.09 E-value=4.9e-06 Score=59.48 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCeEE--EecCCCCCCHHHHHHHHHHhhcccC
Q 028986 159 AQDGIEYAEKNGMFFI--ETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 159 ~~~~~~~~~~~~~~~~--~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
.+.++.+|..-.+..| ++||.+.+-+.++++.+.+...+-+
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGm 187 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM 187 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 3344444444444444 5999999999999999998877643
No 397
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=9.4e-05 Score=54.09 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=68.0
Q ss_pred eeEEEEcCCCC--cHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 34 VKLVLLGDSGV--GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 34 ~~i~i~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..++|+|-+|+ ||.+|+.+|....+...........+...++.. ......+.+.-.+--.++.-.........-+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~-kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDN-KYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecc-eeeecceeEEeecccchhccCCcccccceeeEE
Confidence 46889999998 999999999988876655554444444433321 111112222211111111111111223346889
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
.+||.+....+..++.|+..-.-. ..++ .+.++||.|..
T Consensus 84 mvfdlse~s~l~alqdwl~htdin-sfdi-llcignkvdrv 122 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDIN-SFDI-LLCIGNKVDRV 122 (418)
T ss_pred EEEeccchhhhHHHHhhccccccc-cchh-heecccccccc
Confidence 999999999999999998743222 1122 35567999874
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=1.3e-05 Score=61.06 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=35.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccc------cceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT------VGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 96 (200)
-.++++|++|+|||||+|.|.+.......... ...+.....+....+ ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~----~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG----GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC----CEEEECCCCCcc
Confidence 36899999999999999999986433221111 111222222333222 258999998543
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=3.8e-05 Score=62.45 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=46.5
Q ss_pred EEEEEEeCCChhhhhhc-------ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQERYAAL-------APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.+.|+||+|....... .... . ....++|++.... ...+...+..+... .+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~-- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG-- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc--
Confidence 57899999994322111 1111 1 2345667776643 33333333333322 24568899999633
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
..-.+.......+.++.+++.
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEeC
Confidence 234556666677887776664
No 400
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.03 E-value=5.9e-06 Score=63.85 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=49.3
Q ss_pred cccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 21 LENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 21 ~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
+++......-+..+++.|+|.|++||||+||+|......+.. ...+.+.....+..+. .+.|+|.||
T Consensus 240 lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk----~i~llDsPg 306 (435)
T KOG2484|consen 240 LGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK----KIRLLDSPG 306 (435)
T ss_pred hcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC----CceeccCCc
Confidence 334444445578999999999999999999999997764432 3456666566665543 588999999
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=2.7e-05 Score=61.13 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=46.8
Q ss_pred EEEEEEeCCChhhhh----hcccccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQERYA----ALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
+.+.++||+|..... .....++ ...+.+++|+|++.. ...+...+..+... ++ -=+|+||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~i-dglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---HI-DGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---CC-CEEEEEcccCCCC--
Confidence 578999999953211 1112222 235678888998643 12222233333321 11 3467899996442
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 028986 157 VPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+...+...+.|+..++.
T Consensus 393 --~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 23455666677877666654
No 402
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.94 E-value=4.4e-05 Score=42.66 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=30.2
Q ss_pred CccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986 106 GAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150 (200)
Q Consensus 106 ~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 150 (200)
-.++++|++|++.. -+.+....++..++.. ..+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence 36899999999964 4667777788888776 55899999999998
No 403
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.94 E-value=0.00017 Score=55.56 Aligned_cols=96 Identities=19% Similarity=0.026 Sum_probs=54.3
Q ss_pred EEEEEEeCCChhh----hhhccc-ccc---cCccEEEEEEeCCCHHhHHH-H-HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 83 VKFEIWDTAGQER----YAALAP-LYY---RGAAVAVVVYDITSPDSFNK-A-QYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~~~~~~-~~~---~~~d~~i~v~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
....++++.|... ...... ..+ -..|+++-|+|+.+-..... . ..+..++... =++|+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 4677888888322 122211 112 22588999999987533222 2 3333334332 36889999998
Q ss_pred CCCcCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHH
Q 028986 153 EKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQL 187 (200)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~~ 187 (200)
.+.+ .+..++..+.+ .++++.++.. .....++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~l 192 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG-DVDLAEL 192 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHh
Confidence 7654 44445555554 4568877773 3333333
No 404
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.90 E-value=0.00019 Score=50.36 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=44.4
Q ss_pred EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
..+.++|++|... .......+ ....|.+++|+|+...... + .+...+.+... ..-+|.||.|......
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~~~~~~~~~~~---~~~viltk~D~~~~~g 156 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-NQAKAFNEALG---ITGVILTKLDGDARGG 156 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-HHHHHHHhhCC---CCEEEEECCcCCCCcc
Confidence 4688899999632 11111111 1248999999998754321 1 22233322212 2567779999644322
Q ss_pred CCHHHHHHHHHHcCCeEEE
Q 028986 157 VPAQDGIEYAEKNGMFFIE 175 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (200)
.+...+...++|+..
T Consensus 157 ----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 157 ----AALSIRAVTGKPIKF 171 (173)
T ss_pred ----hhhhhHHHHCcCeEe
Confidence 233355566666543
No 405
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=3.2e-05 Score=61.94 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=46.5
Q ss_pred EEEEEeCCChhhhhhc----ccc--cccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 84 KFEIWDTAGQERYAAL----APL--YYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 84 ~~~l~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
.+.++||+|....... ... ..-.+|.+++|+|++... ..+.+ ..+.... + ..-+|+||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a----~~F~~~l--~-i~gvIlTKlD~~a~-- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA----KAFHEAV--G-IGGIIITKLDGTAK-- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH----HHHHhcC--C-CCEEEEecccCCCc--
Confidence 7899999995332111 111 123578999999988652 12222 2222111 1 13567899996332
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 028986 157 VPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
--.+...+...+.|+.+++.
T Consensus 248 --~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 --GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred --ccHHHHHHHHHCcCEEEEec
Confidence 22345556666777766654
No 406
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.89 E-value=6.4e-05 Score=55.29 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=50.7
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH-------hHHHHHHHHHHH----HHcCCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-------SFNKAQYWVKEL----QKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i----~~~~~~~~p~iiv~nK~D~ 151 (200)
+.++.+|.+|+...+..|...+....++|+|+..+... +-+.++.-+..+ .......+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 57999999999999999999999999999999887532 112232222222 2222446779999999998
Q ss_pred C
Q 028986 152 H 152 (200)
Q Consensus 152 ~ 152 (200)
.
T Consensus 282 l 282 (379)
T KOG0099|consen 282 L 282 (379)
T ss_pred H
Confidence 4
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=9.6e-05 Score=58.84 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=46.5
Q ss_pred EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCC-HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITS-PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
..+.++||+|... .......+ .....-.++|+|++. ...+..+.. ..... + .-=+|+||.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~---~f~~~---~-~~~~I~TKlDEt~~- 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS---AYQGH---G-IHGCIITKVDEAAS- 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH---HhcCC---C-CCEEEEEeeeCCCC-
Confidence 3688999999432 11111221 122456788889885 443443332 22211 1 13467799996432
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+...+...+.++.+++.
T Consensus 342 ---~G~~l~~~~~~~lPi~yvt~ 361 (420)
T PRK14721 342 ---LGIALDAVIRRKLVLHYVTN 361 (420)
T ss_pred ---ccHHHHHHHHhCCCEEEEEC
Confidence 33456666677777766654
No 408
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=57.99 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=40.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC----CCCccccceeEEEEE-EEecCCcEEEEEEEeCCCh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQT-IALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~ 93 (200)
...++++.|+|-||+|||||+|++...... .......+.+..... +.+.+.. .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp--~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP--PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC--ceEEecCCCc
Confidence 356789999999999999999999764321 111122233333332 4454444 4899999994
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=97.86 E-value=2e-05 Score=62.91 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=46.2
Q ss_pred EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.+.++||+|... .......+ .-..+.+++|+|+.... ..+.+..+ .+.. ++ .-+|+||.|....-
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F----~~~~--~i-~giIlTKlD~~~rg 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAF----NEAL--GL-TGVILTKLDGDARG 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHH----HhhC--CC-CEEEEeCccCcccc
Confidence 5789999999421 11111111 12467789999987642 22333332 2211 11 35677999963322
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
-.+.......++|+.++..
T Consensus 257 ----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 1255566667788766654
No 410
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.83 E-value=0.00024 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-.++|.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998854
No 411
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.82 E-value=0.0018 Score=44.89 Aligned_cols=145 Identities=8% Similarity=0.029 Sum_probs=101.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
-+..+...|+++|..+.++..|..++...+.. ....+..-. ..|-..+. ...-...
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-----------~~l~Vh~a~---------sLPLp~e~----~~lRprI 65 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDKE-----------FKLKVHLAK---------SLPLPSEN----NNLRPRI 65 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhccc-----------eeEEEEEec---------cCCCcccc----cCCCcee
Confidence 34556778999999999999999999973211 011111111 01111111 1123347
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|.++|++|.....++..++.-+..+-.....++ +.++++-....+...+...++.+++..++++++.+.-....+...+
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l 144 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL 144 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence 999999999999999888776665533222222 5677777777776778899999999999999999999999998888
Q ss_pred HHHHHHhhcc
Q 028986 188 FEVLITCTSS 197 (200)
Q Consensus 188 ~~~i~~~~~~ 197 (200)
-+.|++.++-
T Consensus 145 AqRLL~~lqi 154 (176)
T PF11111_consen 145 AQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 412
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.81 E-value=2.6e-05 Score=55.53 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
.+.++|+||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45688999999999999999865
No 413
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=3.3e-05 Score=62.85 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=82.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCC-----CCCCc-----------cccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF-----DPTSK-----------VTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
.+.-+|.+..+-.+||||+-.+.+.... ..... ...+.+...--....+. .+++.++||||+-
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-DYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec-cceeEEecCCCce
Confidence 3455899999999999999887754211 00000 00011111111111122 3789999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG 170 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 170 (200)
++....+..++--|+.++++|+...-.-+...-| ++.+..++|.+..+||.|...... ...+..+..+++
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~----rQ~~ry~vP~i~FiNKmDRmGa~~--~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVW----RQMKRYNVPRICFINKMDRMGASP--FRTLNQIRTKLN 185 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHH----HHHHhcCCCeEEEEehhhhcCCCh--HHHHHHHHhhcC
Confidence 9998899999999999999998876322332323 222244788999999999866543 233344444433
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.79 E-value=0.00043 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999999853
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.78 E-value=3.3e-05 Score=61.71 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=47.2
Q ss_pred EEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
+.+.++||+|.... ......+ .-..|.+++|+|+.... ....+...+.... + ..-+|.||.|.....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence 46899999994211 1111111 22468889999987542 2222222222211 1 135668999953322
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 028986 157 VPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
-.+...+...++|+.++..
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 2356666677888776655
No 416
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.77 E-value=0.00037 Score=47.73 Aligned_cols=57 Identities=23% Similarity=0.120 Sum_probs=34.9
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 150 (200)
+.+.++||+|.... ...++..+|-++++....-.+...-++. ..+. . .=++++||.|
T Consensus 92 ~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~-~-----~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME-I-----ADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh-h-----cCEEEEeCCC
Confidence 57899999886422 2347788999999888773332222211 1222 1 1367889987
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.76 E-value=0.00033 Score=55.00 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=45.9
Q ss_pred EEEEEEeCCChhhhh----hcccccccC--ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQERYA----ALAPLYYRG--AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~----~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
+.+.++||.|...+. .....++.. ..-+.+|++++.. .+.+...+..+.... +. =+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~---i~-~~I~TKlDET~--- 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP---ID-GLIFTKLDETT--- 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC---cc-eeEEEcccccC---
Confidence 479999999954332 222222222 2345667777655 445555555554432 21 25679999533
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 028986 157 VPAQDGIEYAEKNGMFFIETS 177 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S 177 (200)
+.-.....+.+.+.|+-+++
T Consensus 353 -s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 -SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred -chhHHHHHHHHhCCCeEEEe
Confidence 23344555555566654444
No 418
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.75 E-value=0.001 Score=51.36 Aligned_cols=85 Identities=8% Similarity=-0.004 Sum_probs=45.3
Q ss_pred EEEEEEeCCChhhhhhccccc-----cc---CccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLY-----YR---GAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~-----~~---~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
....++++.|..+-......+ +. ..+.++.|+|+.+.... +.......++... =++|+||.|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 456789999854322222221 11 25889999999764222 1111122233322 368899999876
Q ss_pred CCcCCHHHHHHHHHHc--CCeEEEec
Q 028986 154 KREVPAQDGIEYAEKN--GMFFIETS 177 (200)
Q Consensus 154 ~~~~~~~~~~~~~~~~--~~~~~~~S 177 (200)
.. +.+.+..+.+ .++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 3444444444 34566554
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00021 Score=56.02 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=46.0
Q ss_pred EEEEEEeCCChhhh----hhccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQERY----AALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~~----~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
+.+.++||+|.... ......+.. ..+.+++|+++... ...+...+.... ..+ +--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~---~l~-i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA---EIP-IDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC---cCC-CCEEEEEcccCCCC--
Confidence 57899999996321 111122222 34666777776432 223333322222 111 23567899996432
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 028986 157 VPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+...+...+.|+..++.
T Consensus 358 --~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEec
Confidence 33456666777888766664
No 420
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.70 E-value=3.4e-05 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999884
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=0.0016 Score=52.95 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=45.9
Q ss_pred EEEEEEeCCChhhhh-------hcccccccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 83 VKFEIWDTAGQERYA-------ALAPLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
..+.++||+|..... ........ ..-.++|+|+... ..+..+...+.. .. ..-+|+||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~-p~e~~LVLdAt~~~~~l~~i~~~f~~------~~-~~g~IlTKlDet~- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGA-PVKRLLLLNATSHGDTLNEVVQAYRG------PG-LAGCILTKLDEAA- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCC-CCeeEEEEeCCCcHHHHHHHHHHhcc------CC-CCEEEEeCCCCcc-
Confidence 368899999932211 11111111 2236788898754 333333222221 12 2346789999543
Q ss_pred CcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 155 REVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
..-.+...+...++++.+++.-.
T Consensus 406 ---~~G~~l~i~~~~~lPI~yvt~GQ 428 (484)
T PRK06995 406 ---SLGGALDVVIRYKLPLHYVSNGQ 428 (484)
T ss_pred ---cchHHHHHHHHHCCCeEEEecCC
Confidence 23355666777788877766433
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.0012 Score=56.31 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=48.3
Q ss_pred EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
..+.|+||+|... ........ ....+-.++|+|++.. +.+..+... +......+ +-=+|+||.|....
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~---f~~~~~~~-i~glIlTKLDEt~~- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA---YRHGAGED-VDGCIITKLDEATH- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH---HhhcccCC-CCEEEEeccCCCCC-
Confidence 4789999999321 11111111 2235567899998853 444433322 22211111 23467899996432
Q ss_pred cCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
.=.+..+....++|+.+++.-.
T Consensus 339 ---~G~iL~i~~~~~lPI~yit~GQ 360 (767)
T PRK14723 339 ---LGPALDTVIRHRLPVHYVSTGQ 360 (767)
T ss_pred ---ccHHHHHHHHHCCCeEEEecCC
Confidence 2345566666788777766433
No 423
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0001 Score=57.43 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=89.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCC-------------------CCCCCc----ccc------ceeEEEEEEEe
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-------------------FDPTSK----VTV------GASFLSQTIAL 77 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~-------------------~~~~~~----~~~------~~~~~~~~~~~ 77 (200)
...++..++++++|+-.+||||+-..+.... ....|. .+. +-+...... +
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA-~ 151 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA-Y 151 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE-E
Confidence 3445778899999999999999865553210 000000 000 000111111 1
Q ss_pred cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFNKA--QYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 78 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
.....-++++.|+||+..|......-..++|..++|+.+...+ .|+.- ...-..+.. ...-...|+++||.|-.
T Consensus 152 FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak-t~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 152 FETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDP 230 (501)
T ss_pred EEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH-hhccceEEEEEEeccCC
Confidence 1122258999999999888877777777899999999885432 12211 111111111 12234478889999964
Q ss_pred CC--CcCCHHHHH----HHHHHc------CCeEEEecCCCCCCHHHHH
Q 028986 153 EK--REVPAQDGI----EYAEKN------GMFFIETSAKTADNINQLF 188 (200)
Q Consensus 153 ~~--~~~~~~~~~----~~~~~~------~~~~~~~S~~~~~~i~~~~ 188 (200)
.. ..-..++.. .+.... ...++++|..+|.++.+..
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 32 112222222 233322 3469999999999988754
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.68 E-value=0.00036 Score=43.59 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=44.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc-ccccccCccEEEEEE
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL-APLYYRGAAVAVVVY 114 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~ 114 (200)
+++.|..|+|||++...+...--.. +.. ...+. .+.++|+++....... .......+|.+++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~-----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~ 66 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID-----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVT 66 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC-----CEEEEeCCCCccchhhhhhhhhhhCCEEEEec
Confidence 6788999999999998887642111 100 01111 5888999986432221 134556789999999
Q ss_pred eCCCH
Q 028986 115 DITSP 119 (200)
Q Consensus 115 d~~~~ 119 (200)
+....
T Consensus 67 ~~~~~ 71 (99)
T cd01983 67 TPEAL 71 (99)
T ss_pred CCchh
Confidence 88754
No 425
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=0.00019 Score=57.59 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=48.1
Q ss_pred EEEEEEeCCChhhhh----hccccccc---CccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 83 VKFEIWDTAGQERYA----ALAPLYYR---GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
+.+.++||+|..... .....++. ...-+++|++++.. ..+..+ +..+... ++ --+|+||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~~-~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---PL-DGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---CC-CEEEEeccccccc
Confidence 578999999952211 11122222 23466778888644 333333 2222211 21 2477899996332
Q ss_pred CcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 155 REVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
.-.+..++...+.++.+++.-.
T Consensus 373 ----~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 373 ----LGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred ----ccHHHHHHHHHCCCEEEEeCCC
Confidence 2356677777888877766533
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.68 E-value=0.00068 Score=49.29 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=32.0
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
...+.+|.+|.|+|++.. ++...++..+...+.. -.++.+|+||.|-
T Consensus 151 g~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e 197 (255)
T COG3640 151 GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDE 197 (255)
T ss_pred ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence 345779999999999854 3444444444444332 2669999999994
No 427
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.68 E-value=0.0008 Score=43.28 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=59.6
Q ss_pred EEEE-cCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 36 LVLL-GDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 36 i~i~-G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
|+++ +..|+||||+...|........ +............. ..+.++|+|+.... .....+..+|.++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv 72 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFG--DDYVVVDLGRSLDE--VSLAALDQADRVFLVT 72 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCC--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEe
Confidence 3444 5677999998877755321110 11111111111111 16899999986432 2234667799999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcCCC-CCeEEEEEeC
Q 028986 115 DITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNK 148 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK 148 (200)
+.+.. +...+..+++.+.+.... ...+.+|+|+
T Consensus 73 ~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 73 QQDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred cCChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 87644 466667777777665443 4457777775
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.67 E-value=0.0003 Score=44.98 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=48.6
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 36 LVLLG-DSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 36 i~i~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
|+|.| ..|+||||+...|....-. . +...... .. + ..+.+.++|+|+..... ....+..+|.++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~vl~~--d~-d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~ 69 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRVLLI--DL-D-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPV 69 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcEEEE--eC-C-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEec
Confidence 56777 5689999998877653211 0 1111111 11 1 11578999999864322 225667799999999
Q ss_pred eCCCHHhHHHHHHHHH
Q 028986 115 DITSPDSFNKAQYWVK 130 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~ 130 (200)
+.+. .++..+..+++
T Consensus 70 ~~~~-~s~~~~~~~~~ 84 (104)
T cd02042 70 QPSP-LDLDGLEKLLE 84 (104)
T ss_pred cCCH-HHHHHHHHHHH
Confidence 8764 34555555554
No 429
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=4.1e-05 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+|+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.64 E-value=6.3e-05 Score=43.10 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
..+|.|+.|+|||||+.++.---
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999887643
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.64 E-value=4.7e-05 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 432
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0015 Score=51.93 Aligned_cols=135 Identities=18% Similarity=0.183 Sum_probs=68.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCC-C-----------CCCCc----------cccceeEEEEE-E-Ee---cCCcEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQ-F-----------DPTSK----------VTVGASFLSQT-I-AL---QDSTTVKF 85 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~-~-----------~~~~~----------~~~~~~~~~~~-~-~~---~~~~~~~~ 85 (200)
...++++|++||||||++..|.... . +.... ...+....... . .. -....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999887421 0 00000 00011110000 0 00 00123578
Q ss_pred EEEeCCChhhh----hhccccccc-----CccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 86 EIWDTAGQERY----AALAPLYYR-----GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 86 ~l~D~~g~~~~----~~~~~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
.++||+|.... ...+..+++ ...-.++|+|++.. +....+...+ ... ++ -=+|+||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f---~~~---~~-~glIlTKLDEt~~- 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY---ESL---NY-RRILLTKLDEADF- 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh---cCC---CC-CEEEEEcccCCCC-
Confidence 99999995311 111222221 23467889998865 2333333222 211 11 3467899996432
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+...+...+.|+..++.
T Consensus 375 ---~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 375 ---LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred ---ccHHHHHHHHHCCCEEEEec
Confidence 22355666667777666654
No 433
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00035 Score=47.27 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=59.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCC
Q 028986 38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT 117 (200)
Q Consensus 38 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 117 (200)
.-|..|+|||++.-.+...--.. .....-.+. .... ....+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~---D~~~-~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDA---DLGL-ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEC---CCCC-CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 44789999999876665421100 000000000 0000 0011578999999743 222345688899999999987
Q ss_pred CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 118 SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 118 ~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
.. ++......++.+.+. ....++.+|+|+.+.
T Consensus 78 ~~-s~~~~~~~l~~l~~~-~~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PT-SITDAYALIKKLAKQ-LRVLNFRVVVNRAES 109 (139)
T ss_pred hh-HHHHHHHHHHHHHHh-cCCCCEEEEEeCCCC
Confidence 43 344444455555443 234567899999974
No 434
>PRK07261 topology modulation protein; Provisional
Probab=97.60 E-value=5.9e-05 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+|+|+|++|||||||++.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.0016 Score=49.07 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=69.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCC-----------CCC----------CccccceeEEEEE----EE-----ecCCcEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQF-----------DPT----------SKVTVGASFLSQT----IA-----LQDSTTV 83 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~-----------~~~----------~~~~~~~~~~~~~----~~-----~~~~~~~ 83 (200)
-+++++|++|+||||++..+..... +.. +....+....... +. ......+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 5899999999999999988754310 000 0000011110000 00 0011135
Q ss_pred EEEEEeCCChhhh----hhcccccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986 84 KFEIWDTAGQERY----AALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (200)
Q Consensus 84 ~~~l~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~ 157 (200)
.+.++||+|.... ...+..++ .+.+-+++|+|++.. .+.+..++..+... .+--+|+||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCCC---
Confidence 7899999995321 11111222 235678999998743 12222222222221 123467899996442
Q ss_pred CHHHHHHHHHHcCCeEEEecC
Q 028986 158 PAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+...+...+.|+..++.
T Consensus 227 -~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEeC
Confidence 23455666667777666654
No 436
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00067 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.-+|+|+||.|+|||||+..|++..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC
Confidence 3489999999999999999998854
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.52 E-value=7.9e-05 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|+++|++|||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 438
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00021 Score=52.51 Aligned_cols=146 Identities=16% Similarity=0.240 Sum_probs=84.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc---
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR--- 105 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~--- 105 (200)
....+..|++.|..+. |++|++.+...- +...++....|++....-.+..+--..+|+.+|......+..--+.
T Consensus 41 ~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~ 117 (363)
T KOG3929|consen 41 AEKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDT 117 (363)
T ss_pred hccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccc
Confidence 3456778999998765 899988887543 2344555666655443332322234578999886554444333222
Q ss_pred -CccEEEEEEeCCCHHhH-HHHHHHHHHHHH-------------------------------------cCCCCCeEEEEE
Q 028986 106 -GAAVAVVVYDITSPDSF-NKAQYWVKELQK-------------------------------------HGSPDIVMALVG 146 (200)
Q Consensus 106 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~-------------------------------------~~~~~~p~iiv~ 146 (200)
+.-.+|+++|+++++.+ ..++..+..++. .....+|++||+
T Consensus 118 l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVg 197 (363)
T KOG3929|consen 118 LRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVG 197 (363)
T ss_pred hhhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEec
Confidence 13467899999987543 433333332221 013368999999
Q ss_pred eCCCCCCCCcCCHHHHHHHHH-------HcCCeEEEecCC
Q 028986 147 NKADLHEKREVPAQDGIEYAE-------KNGMFFIETSAK 179 (200)
Q Consensus 147 nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~S~~ 179 (200)
.|.|....-+ .+..+..|+ .+|..++..|++
T Consensus 198 sKYDvFq~Fe--sekRkH~C~~LRf~Ah~yGaaLlmfSsk 235 (363)
T KOG3929|consen 198 SKYDVFQDFE--SEKRKHICKTLRFVAHYYGAALLMFSSK 235 (363)
T ss_pred cchhhhcccc--HHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 9999866533 333344443 235555555555
No 439
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00048 Score=48.21 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=73.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----------hccccc-
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----------ALAPLY- 103 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~- 103 (200)
-|.|+|.+|||||||++++-.-+.+........... .......+|. +.--|.--.+..+ .+|.+.
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~gee-i~~k~~~~G~---l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmt 109 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEE-IRLKRDKDGQ---LKPADKRQLQRLRTRLGMVFQHFNLWSHMT 109 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeE-EEeeeCCCCC---eeeCCHHHHHHHHHHhhHhhhhcchhHHHH
Confidence 488999999999999998876443322111111111 1111111111 1111111111111 122221
Q ss_pred -ccC-ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC-----CCCCcCCHHHHHHHHHHcCCeEE--
Q 028986 104 -YRG-AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL-----HEKREVPAQDGIEYAEKNGMFFI-- 174 (200)
Q Consensus 104 -~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~-----~~~~~~~~~~~~~~~~~~~~~~~-- 174 (200)
+.+ ..+-+-|+-.+..+..+....++..+- +..|.|. ....+.....++.++.+-.+.+|
T Consensus 110 vLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVG-----------i~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDE 178 (256)
T COG4598 110 VLENVIEAPVHVLGVSKAEAIERAEKYLAKVG-----------IAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE 178 (256)
T ss_pred HHHHHHhcchHhhcCCHHHHHHHHHHHHHHhC-----------chhhhhcCccccCchHHHHHHHHHHHhcCCceEeecC
Confidence 111 223344455555555555555555432 2234332 12233333444445544444444
Q ss_pred EecCCCCCCHHHHHHHHHHhhcccC
Q 028986 175 ETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
++||.+.+-+.+++..|.+.+++-+
T Consensus 179 PTSALDPElVgEVLkv~~~LAeEgr 203 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLAEEGR 203 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999999988877643
No 440
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.49 E-value=0.0033 Score=49.10 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999999864
No 441
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.49 E-value=1.1e-05 Score=62.60 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCCccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 17 GLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
..+.+++...-...++.|.|.++|.|++||||+||.|-..+.....+. .+.+. .+.+-.-- -++.++|+||.
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPI-pGETK---VWQYItLm-krIfLIDcPGv 362 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPI-PGETK---VWQYITLM-KRIFLIDCPGV 362 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCC-CCcch---HHHHHHHH-hceeEecCCCc
Confidence 344445555545567889999999999999999999998876654432 22221 11110000 36889999993
No 442
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00062 Score=54.70 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=78.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCC------------CCCCCc--cccceeE--EEEEEE-------------ecCCcEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQ------------FDPTSK--VTVGASF--LSQTIA-------------LQDSTTV 83 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~------------~~~~~~--~~~~~~~--~~~~~~-------------~~~~~~~ 83 (200)
.-++.|+.+-.-|||||-..|.... |..... ...+.+. +..... -.++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 3478899999999999999997532 111100 1111111 111110 1244557
Q ss_pred EEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-CCcCCHHHH
Q 028986 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDG 162 (200)
Q Consensus 84 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~-~~~~~~~~~ 162 (200)
.+.++|.||+-++.+.....++-.|+.++|+|.-+.-..+.-.-+.+.+.+ .+.-+++.||.|..- +.+.+.+++
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~EeL 174 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEEL 174 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHHH
Confidence 899999999999999999999999999999999876433322222233333 333467899999621 233444444
Q ss_pred HH
Q 028986 163 IE 164 (200)
Q Consensus 163 ~~ 164 (200)
-+
T Consensus 175 yq 176 (842)
T KOG0469|consen 175 YQ 176 (842)
T ss_pred HH
Confidence 43
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=9.7e-05 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~ 57 (200)
|+|+|++|||||||+|.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998854
No 444
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00013 Score=43.05 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999875
No 445
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.41 E-value=0.00018 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++|+|++|||||||+|.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999888754
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.41 E-value=0.00013 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5889999999999999999884
No 447
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0023 Score=50.73 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=47.2
Q ss_pred EEEEEEeCCChhhhh----hcccccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQERYA----ALAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~----~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.+.++||+|..... .....++.. ..-.++|+|++.. ...+...+...... + +-=+|+||.|....
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~---~-~~~~I~TKlDet~~- 327 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF---S-YKTVIFTKLDETTC- 327 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC---C-CCEEEEEeccCCCc-
Confidence 579999999953211 111222221 2257899999875 23333333333221 1 23467899996432
Q ss_pred cCCHHHHHHHHHHcCCeEEEecC
Q 028986 156 EVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.-.+..++...+.|+..++.
T Consensus 328 ---~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 328 ---VGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred ---chHHHHHHHHHCCCEEEEeC
Confidence 23455666667777666554
No 448
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.38 E-value=0.00012 Score=50.98 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999874
No 449
>PRK04195 replication factor C large subunit; Provisional
Probab=97.36 E-value=0.0048 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|.|++|+|||++++.|.+.
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999885
No 450
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00012 Score=56.83 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=27.4
Q ss_pred EEEEEEeCCChhhhh-hc------ccccccCccEEEEEEeCCCHHhHHHHH
Q 028986 83 VKFEIWDTAGQERYA-AL------APLYYRGAAVAVVVYDITSPDSFNKAQ 126 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~-~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~ 126 (200)
+.+.|.||+|..... .+ ...++ ..|-+|+|.|++-...-+...
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEEEEeccccHhHHHHH
Confidence 689999999943211 11 11122 379999999999765554443
No 451
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.34 E-value=0.0002 Score=52.72 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=24.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-+..++++|+|++|||||+|+..|+..
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3466789999999999999999999874
No 452
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.34 E-value=0.0002 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999985
No 453
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.32 E-value=0.0016 Score=49.36 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=60.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---hh-------------
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---ER------------- 95 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---~~------------- 95 (200)
.-.+++|+|++|.|||+++++|....- +... .+ ...+.+..+..|.. ..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d----~~----------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHP-PQSD----ED----------AERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCC-CCCC----CC----------CccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 334799999999999999999998532 1111 11 01123444555441 11
Q ss_pred --------hhhcccccccCccEEEEEEeCCCH---HhHHHHHHHHHHHHHcC-CCCCeEEEEEeC
Q 028986 96 --------YAALAPLYYRGAAVAVVVYDITSP---DSFNKAQYWVKELQKHG-SPDIVMALVGNK 148 (200)
Q Consensus 96 --------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK 148 (200)
........++...+=++++|--.. .+....+.+++.++..+ .-.+|+|.|+++
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 111222345667788899985532 23444566666666654 457899998875
No 454
>PRK06217 hypothetical protein; Validated
Probab=97.32 E-value=0.00021 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999875
No 455
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.31 E-value=0.0015 Score=43.68 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.|++.|+.|+|||||++.+....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998863
No 456
>PRK03839 putative kinase; Provisional
Probab=97.31 E-value=0.00022 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+|+|+|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999774
No 457
>PLN02200 adenylate kinase family protein
Probab=97.30 E-value=0.00036 Score=51.51 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=25.4
Q ss_pred cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 23 ~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+..+....+..+.|+|+|+|||||||+...|...
T Consensus 33 ~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 33 ERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred cccCCccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3333333455678999999999999999988753
No 458
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.29 E-value=0.00022 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+||.|||||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999999873
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.29 E-value=0.00025 Score=47.92 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 460
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.29 E-value=0.00027 Score=47.14 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDP 60 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~ 60 (200)
.++|+|++|+|||++++.+.......
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCC
Confidence 68999999999999999999865433
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.28 E-value=0.00054 Score=49.61 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.....-|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344556888999999999999999764
No 462
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.27 E-value=0.0012 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998853
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.27 E-value=0.00031 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+...-|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999999999864
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.27 E-value=0.00027 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999774
No 465
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.27 E-value=0.00026 Score=46.88 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.26 E-value=0.00026 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999775
No 467
>PRK14530 adenylate kinase; Provisional
Probab=97.26 E-value=0.00027 Score=51.55 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.26 E-value=0.00028 Score=47.81 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|+|+.+||||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.25 E-value=0.00028 Score=45.22 Aligned_cols=20 Identities=35% Similarity=0.798 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028986 35 KLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~ 54 (200)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999875
No 470
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00028 Score=49.51 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
=+++.||+|+|||||+++|....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37788999999999999999865
No 471
>PRK13949 shikimate kinase; Provisional
Probab=97.22 E-value=0.00032 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+|+|+|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988764
No 472
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.21 E-value=0.0042 Score=47.29 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028986 35 KLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~ 54 (200)
.|+|.|++||||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999999999994
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.21 E-value=0.00034 Score=49.78 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|+|++|||||||++.|.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999884
No 474
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.20 E-value=0.013 Score=41.12 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=50.0
Q ss_pred EEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH
Q 028986 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI 163 (200)
Q Consensus 84 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 163 (200)
.+.++|+|+..... ....+..+|.+|++++.+.. ++..+..+++.+.... .....+|+|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 68999999753322 23446789999999988754 3445555556555431 23467889999864322 122233
Q ss_pred HHHHHcCCeEE
Q 028986 164 EYAEKNGMFFI 174 (200)
Q Consensus 164 ~~~~~~~~~~~ 174 (200)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444566544
No 475
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.20 E-value=0.00033 Score=50.82 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHH
Q 028986 34 VKLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~ 54 (200)
+--+|+|||||||||.++...
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 456899999999999876553
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.19 E-value=0.00043 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+.+.|+|.|++|||||||++.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999874
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=97.19 E-value=0.00028 Score=55.41 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
+++++|.+|+|||||+|.|.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 68999999999999999999854
No 478
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.00038 Score=49.08 Aligned_cols=21 Identities=38% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.++|+|++|+|||||++.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999998863
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.18 E-value=0.00035 Score=49.32 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 3789999999999999999984
No 480
>PRK14532 adenylate kinase; Provisional
Probab=97.18 E-value=0.00037 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
++|+++|+|||||||+...|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
No 481
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.17 E-value=0.005 Score=50.73 Aligned_cols=85 Identities=8% Similarity=0.104 Sum_probs=44.9
Q ss_pred cEEEEEEeCCCH---HhHHHHHHHHHHHHHcCCCCC-eEEEEEeCCCCCCCCc-CC-----H--HHHHHHHHHcCCeEEE
Q 028986 108 AVAVVVYDITSP---DSFNKAQYWVKELQKHGSPDI-VMALVGNKADLHEKRE-VP-----A--QDGIEYAEKNGMFFIE 175 (200)
Q Consensus 108 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~~~~~-~~-----~--~~~~~~~~~~~~~~~~ 175 (200)
--+|+|=|.-+. ++ ..+...+..+... ... |+|+|++=+|...... .. . ....++....++..+.
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~ 209 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK 209 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence 355666666542 22 3333333333322 234 9999999654322111 00 0 1112344455777788
Q ss_pred ecCCCCCCHHHHHHHHHHhh
Q 028986 176 TSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~ 195 (200)
..+-...-+...+..|+.+-
T Consensus 210 FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 210 FNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred ecCCCHHHHHHHHHHHHHHH
Confidence 87777777777777776653
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.17 E-value=0.00035 Score=50.21 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|.|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 483
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.17 E-value=0.0021 Score=42.40 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=38.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC--CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-cccccCccEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFD--PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-PLYYRGAAVAV 111 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-~~~~~~~d~~i 111 (200)
-|++-|+-|+|||||++.+....-. ...+||......+.. .....+++-++-..+.++..... ..++. .+.++
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~---~~~~l~H~DLYRl~~~~e~~~~g~~e~~~-~~~i~ 92 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEG---GNIPLYHFDLYRLEDPEELEDLGLEEYLF-EDGIC 92 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEE---TTEEEEEEE-TT-SSTHHHHHCTTTTCSS-SSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecC---CCceEEEeeccccCCHHHHHHCCchhhhC-CCCEE
Confidence 4888899999999999999874321 233343333322211 22233455555555555444332 22222 25555
Q ss_pred EEE
Q 028986 112 VVY 114 (200)
Q Consensus 112 ~v~ 114 (200)
++=
T Consensus 93 ~IE 95 (123)
T PF02367_consen 93 VIE 95 (123)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 484
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00036 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 388999999999999999988
No 485
>PRK08233 hypothetical protein; Provisional
Probab=97.16 E-value=0.00045 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356888999999999999999874
No 486
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.16 E-value=0.0036 Score=44.12 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=57.7
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH
Q 028986 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161 (200)
Q Consensus 82 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 161 (200)
.+.+.++|+|+.... .....+..+|.+++++..+.. +...+..+++.+.+. +.|+.+|+||.|.... ...+
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~ 162 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE 162 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence 468999999965321 223456789999999998843 455566666666544 4568899999996432 2456
Q ss_pred HHHHHHHcCCeEE
Q 028986 162 GIEYAEKNGMFFI 174 (200)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (200)
+.+++++.+++++
T Consensus 163 ~~~~~~~~~~~vl 175 (179)
T cd03110 163 IEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCCeE
Confidence 6777777887755
No 487
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.00038 Score=49.41 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|+|++||||||+++.|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 488
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.15 E-value=0.0004 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998874
No 489
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00038 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~ 57 (200)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998854
No 490
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.13 E-value=0.00047 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+|+|||||||+.+.|...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
No 491
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.12 E-value=0.00045 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 492
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0048 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998853
No 493
>PRK00625 shikimate kinase; Provisional
Probab=97.12 E-value=0.00045 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+|+++|.+||||||+.+.|...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999653
No 494
>PRK10646 ADP-binding protein; Provisional
Probab=97.12 E-value=0.0058 Score=41.89 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998753
No 495
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.11 E-value=0.0011 Score=46.63 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=27.9
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
|++++|+|+..+.+... ..+.+.+. ....+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987632211 12222221 1233578999999999964
No 496
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.11 E-value=0.00044 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~ 57 (200)
|+|+|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988753
No 497
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00045 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
....||+|.|-||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 45679999999999999999999853
No 498
>PRK14531 adenylate kinase; Provisional
Probab=97.11 E-value=0.0005 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+|+++|+|||||||+.+.|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 499
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00038 Score=49.95 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.+++||+|||||||++.|-+.
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 3679999999999999998774
No 500
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.10 E-value=0.0015 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...-++++.|++|+||||+++++++.
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHH
Confidence 34558999999999999999999984
Done!