Query 028986
Match_columns 200
No_of_seqs 162 out of 1839
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 08:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.1E-39 1.1E-43 233.9 18.1 166 31-197 11-176 (216)
2 2gf9_A RAS-related protein RAB 100.0 9.1E-35 3.1E-39 206.7 21.0 169 29-198 18-186 (189)
3 3tkl_A RAS-related protein RAB 100.0 1.6E-34 5.3E-39 206.3 21.8 170 29-199 12-181 (196)
4 2a5j_A RAS-related protein RAB 100.0 1.2E-34 4E-39 206.5 21.1 170 28-198 16-185 (191)
5 2hup_A RAS-related protein RAB 100.0 4.9E-35 1.7E-39 210.2 18.9 170 28-198 24-194 (201)
6 2efe_B Small GTP-binding prote 100.0 3.1E-34 1.1E-38 202.3 22.3 168 30-198 9-176 (181)
7 1z08_A RAS-related protein RAB 100.0 1.3E-34 4.4E-39 202.2 19.8 167 31-198 4-170 (170)
8 1z0f_A RAB14, member RAS oncog 100.0 1.6E-34 5.4E-39 203.3 20.4 168 29-197 11-178 (179)
9 2fu5_C RAS-related protein RAB 100.0 7.9E-35 2.7E-39 205.8 18.7 168 30-198 5-172 (183)
10 2ew1_A RAS-related protein RAB 100.0 1.5E-34 5.3E-39 207.5 20.2 168 29-197 22-189 (201)
11 1r2q_A RAS-related protein RAB 100.0 2.4E-34 8.1E-39 200.7 19.9 166 31-197 4-169 (170)
12 2o52_A RAS-related protein RAB 100.0 1.1E-34 3.7E-39 208.2 18.6 170 27-197 19-188 (200)
13 2oil_A CATX-8, RAS-related pro 100.0 1.5E-34 5.2E-39 206.1 19.2 171 27-198 19-189 (193)
14 1z0j_A RAB-22, RAS-related pro 100.0 5.2E-34 1.8E-38 199.0 21.3 166 31-197 4-169 (170)
15 2fg5_A RAB-22B, RAS-related pr 100.0 2.4E-34 8.2E-39 205.1 19.8 169 29-198 19-187 (192)
16 2bcg_Y Protein YP2, GTP-bindin 100.0 8.9E-34 3.1E-38 204.2 22.8 168 30-198 5-172 (206)
17 3dz8_A RAS-related protein RAB 100.0 2.7E-35 9.2E-40 209.8 14.5 170 29-199 19-188 (191)
18 2g6b_A RAS-related protein RAB 100.0 9.6E-34 3.3E-38 199.6 22.3 169 29-198 6-175 (180)
19 3kkq_A RAS-related protein M-R 100.0 4.5E-34 1.5E-38 201.9 20.5 169 28-198 13-183 (183)
20 1ek0_A Protein (GTP-binding pr 100.0 4.1E-34 1.4E-38 199.4 19.9 165 32-197 2-169 (170)
21 2bme_A RAB4A, RAS-related prot 100.0 4.6E-34 1.6E-38 202.3 20.4 167 30-197 7-173 (186)
22 2f7s_A C25KG, RAS-related prot 100.0 1.1E-34 3.6E-39 210.6 17.3 170 29-198 21-200 (217)
23 1zbd_A Rabphilin-3A; G protein 100.0 1E-33 3.4E-38 203.4 21.8 168 29-197 4-171 (203)
24 1g16_A RAS-related protein SEC 100.0 6.7E-34 2.3E-38 198.4 19.8 165 32-198 2-166 (170)
25 3tw8_B RAS-related protein RAB 100.0 8.8E-34 3E-38 199.8 20.5 168 29-198 5-172 (181)
26 2il1_A RAB12; G-protein, GDP, 100.0 2.3E-34 8E-39 205.2 17.1 171 27-198 20-191 (192)
27 3bc1_A RAS-related protein RAB 100.0 1.8E-33 6.3E-38 200.3 21.3 171 28-198 6-186 (195)
28 2hxs_A RAB-26, RAS-related pro 100.0 2.1E-34 7.2E-39 202.6 15.7 168 31-198 4-174 (178)
29 3t5g_A GTP-binding protein RHE 100.0 1.4E-33 4.9E-38 199.0 19.8 166 31-198 4-170 (181)
30 3cpj_B GTP-binding protein YPT 100.0 1.2E-33 4.3E-38 205.9 19.9 168 30-198 10-177 (223)
31 2p5s_A RAS and EF-hand domain 100.0 3.6E-34 1.2E-38 205.2 16.5 169 29-198 24-198 (199)
32 1z06_A RAS-related protein RAB 100.0 1.3E-33 4.3E-38 200.8 18.8 169 28-197 15-188 (189)
33 1z2a_A RAS-related protein RAB 100.0 9.1E-34 3.1E-38 197.4 17.7 165 31-197 3-167 (168)
34 2y8e_A RAB-protein 6, GH09086P 100.0 1.5E-33 5E-38 198.3 18.7 167 31-198 12-178 (179)
35 3cbq_A GTP-binding protein REM 100.0 8.7E-34 3E-38 202.7 17.5 171 27-198 17-189 (195)
36 3l0i_B RAS-related protein RAB 100.0 3.1E-36 1.1E-40 216.0 4.7 171 28-199 28-198 (199)
37 3oes_A GTPase rhebl1; small GT 100.0 1E-33 3.6E-38 203.1 17.4 169 28-198 19-188 (201)
38 3q85_A GTP-binding protein REM 100.0 2.1E-33 7.3E-38 195.9 18.1 166 33-199 2-169 (169)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.3E-33 2.8E-37 194.3 21.2 167 30-198 4-175 (177)
40 3reg_A RHO-like small GTPase; 100.0 8.3E-33 2.8E-37 197.3 21.4 168 29-199 19-190 (194)
41 3q3j_B RHO-related GTP-binding 100.0 3E-33 1E-37 202.7 19.2 169 27-198 21-204 (214)
42 1ky3_A GTP-binding protein YPT 100.0 2.8E-33 9.4E-38 197.4 18.4 169 30-198 5-179 (182)
43 1x3s_A RAS-related protein RAB 100.0 6.5E-33 2.2E-37 197.7 20.4 168 29-198 11-179 (195)
44 2g3y_A GTP-binding protein GEM 100.0 6.4E-33 2.2E-37 200.2 20.4 185 11-197 15-203 (211)
45 2fn4_A P23, RAS-related protei 100.0 4.2E-33 1.4E-37 196.3 18.8 168 29-198 5-173 (181)
46 3clv_A RAB5 protein, putative; 100.0 1.4E-32 4.6E-37 197.3 21.5 166 31-199 5-206 (208)
47 3c5c_A RAS-like protein 12; GD 100.0 2E-33 6.9E-38 199.5 16.9 165 30-197 18-186 (187)
48 3cph_A RAS-related protein SEC 100.0 7.2E-33 2.5E-37 200.2 19.8 168 29-198 16-183 (213)
49 3ihw_A Centg3; RAS, centaurin, 100.0 1.4E-32 4.8E-37 194.7 20.7 163 28-198 15-181 (184)
50 4djt_A GTP-binding nuclear pro 100.0 1.1E-33 3.8E-38 205.4 15.2 170 29-198 7-176 (218)
51 1u8z_A RAS-related protein RAL 100.0 6.2E-33 2.1E-37 193.0 18.3 165 32-198 3-168 (168)
52 2nzj_A GTP-binding protein REM 100.0 1.2E-32 4.1E-37 193.0 19.8 166 31-198 2-170 (175)
53 3q72_A GTP-binding protein RAD 100.0 1E-32 3.6E-37 191.8 18.9 163 33-198 2-165 (166)
54 2a9k_A RAS-related protein RAL 100.0 6.9E-33 2.3E-37 196.1 17.8 166 31-198 16-182 (187)
55 1c1y_A RAS-related protein RAP 100.0 1.1E-32 3.7E-37 191.8 18.2 163 32-196 2-166 (167)
56 2bov_A RAla, RAS-related prote 100.0 1.6E-32 5.3E-37 197.4 19.5 167 29-197 10-177 (206)
57 2atx_A Small GTP binding prote 100.0 3.8E-32 1.3E-36 193.8 21.4 165 29-196 14-192 (194)
58 2gco_A H9, RHO-related GTP-bin 100.0 6.3E-32 2.2E-36 193.9 21.8 166 29-197 21-200 (201)
59 1vg8_A RAS-related protein RAB 100.0 2.8E-32 9.5E-37 196.3 20.0 166 30-197 5-175 (207)
60 3con_A GTPase NRAS; structural 100.0 5.9E-32 2E-36 192.2 21.4 172 24-198 12-184 (190)
61 2yc2_C IFT27, small RAB-relate 100.0 4.9E-33 1.7E-37 200.2 15.6 167 31-197 18-192 (208)
62 1kao_A RAP2A; GTP-binding prot 100.0 8.9E-33 3E-37 192.0 16.4 164 32-197 2-166 (167)
63 1m7b_A RND3/RHOE small GTP-bin 100.0 3E-32 1E-36 192.9 18.5 165 30-197 4-183 (184)
64 1gwn_A RHO-related GTP-binding 100.0 3.8E-32 1.3E-36 195.6 18.4 165 30-197 25-204 (205)
65 2atv_A RERG, RAS-like estrogen 100.0 1.9E-32 6.6E-37 195.7 16.5 166 30-198 25-192 (196)
66 2iwr_A Centaurin gamma 1; ANK 100.0 5.2E-32 1.8E-36 190.5 18.2 159 31-197 5-169 (178)
67 2erx_A GTP-binding protein DI- 100.0 2.3E-32 7.9E-37 190.9 16.3 165 32-198 2-168 (172)
68 4gzl_A RAS-related C3 botulinu 100.0 3.9E-32 1.3E-36 195.4 17.8 164 29-195 26-203 (204)
69 2q3h_A RAS homolog gene family 100.0 6.7E-32 2.3E-36 193.6 18.9 167 29-198 16-196 (201)
70 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-31 5E-36 189.7 20.2 164 31-197 2-166 (189)
71 2j1l_A RHO-related GTP-binding 100.0 7E-32 2.4E-36 195.5 18.3 166 30-198 31-210 (214)
72 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.9E-31 6.4E-36 188.7 20.0 165 31-198 3-181 (186)
73 2j0v_A RAC-like GTP-binding pr 100.0 6.4E-32 2.2E-36 195.3 17.2 165 31-198 7-181 (212)
74 2fv8_A H6, RHO-related GTP-bin 100.0 2.7E-31 9.4E-36 191.4 19.8 164 31-197 23-200 (207)
75 2ce2_X GTPase HRAS; signaling 100.0 4.8E-31 1.7E-35 182.9 19.3 162 33-197 3-165 (166)
76 2gf0_A GTP-binding protein DI- 100.0 2.7E-31 9.1E-36 190.0 17.9 165 31-198 6-172 (199)
77 3t1o_A Gliding protein MGLA; G 100.0 3.3E-32 1.1E-36 194.3 12.7 168 28-198 9-193 (198)
78 3bwd_D RAC-like GTP-binding pr 100.0 3.9E-32 1.3E-36 191.7 12.8 163 31-196 6-180 (182)
79 4bas_A ADP-ribosylation factor 100.0 1.5E-31 5.3E-36 191.2 15.7 165 27-198 11-190 (199)
80 1zd9_A ADP-ribosylation factor 100.0 8.4E-32 2.9E-36 191.3 13.0 164 29-199 18-187 (188)
81 3gj0_A GTP-binding nuclear pro 100.0 5.4E-32 1.8E-36 196.9 12.2 168 27-198 9-176 (221)
82 2cjw_A GTP-binding protein GEM 100.0 2.2E-30 7.4E-35 184.7 19.5 165 31-197 4-172 (192)
83 2h57_A ADP-ribosylation factor 100.0 3E-30 1E-34 183.4 17.9 163 29-198 17-188 (190)
84 1upt_A ARL1, ADP-ribosylation 100.0 9E-31 3.1E-35 182.8 14.8 160 31-198 5-170 (171)
85 1ksh_A ARF-like protein 2; sma 100.0 7.7E-30 2.6E-34 180.7 19.7 161 31-199 16-182 (186)
86 2f9l_A RAB11B, member RAS onco 100.0 2.3E-29 7.8E-34 180.3 21.3 166 31-197 3-168 (199)
87 1r8s_A ADP-ribosylation factor 100.0 4.3E-31 1.5E-35 183.3 11.4 157 34-198 1-163 (164)
88 2b6h_A ADP-ribosylation factor 100.0 4.3E-31 1.5E-35 188.3 11.3 161 30-198 26-192 (192)
89 1f6b_A SAR1; gtpases, N-termin 100.0 3.5E-30 1.2E-34 184.4 15.9 157 31-195 23-197 (198)
90 1oix_A RAS-related protein RAB 100.0 2.1E-29 7.2E-34 179.4 19.7 165 30-195 26-190 (191)
91 1m2o_B GTP-binding protein SAR 100.0 1.2E-29 4E-34 180.6 18.3 156 31-194 21-189 (190)
92 2h17_A ADP-ribosylation factor 100.0 3.9E-30 1.3E-34 181.5 14.0 161 27-195 15-181 (181)
93 3llu_A RAS-related GTP-binding 100.0 1.8E-30 6.2E-35 185.6 11.5 164 27-195 14-195 (196)
94 1zj6_A ADP-ribosylation factor 100.0 1.1E-29 3.8E-34 180.0 15.4 160 31-198 14-179 (187)
95 1fzq_A ADP-ribosylation factor 100.0 2.1E-29 7E-34 177.9 15.2 160 31-198 14-179 (181)
96 2x77_A ADP-ribosylation factor 100.0 2.4E-30 8.3E-35 183.7 10.1 160 31-198 20-185 (189)
97 2zej_A Dardarin, leucine-rich 100.0 2.9E-30 9.9E-35 182.7 9.7 165 33-198 2-179 (184)
98 3th5_A RAS-related C3 botulinu 99.9 4.9E-32 1.7E-36 194.8 0.0 162 31-195 28-203 (204)
99 1moz_A ARL1, ADP-ribosylation 100.0 2.4E-29 8.1E-34 177.6 12.7 159 31-197 16-180 (183)
100 2wkq_A NPH1-1, RAS-related C3 100.0 2.6E-28 9E-33 187.3 19.3 164 31-197 153-330 (332)
101 2fh5_B SR-beta, signal recogni 100.0 9.2E-29 3.2E-33 178.9 12.7 162 31-195 5-214 (214)
102 2wji_A Ferrous iron transport 100.0 2.9E-28 1E-32 169.5 12.4 154 33-196 3-164 (165)
103 3c5h_A Glucocorticoid receptor 100.0 2.1E-29 7E-34 187.0 6.8 166 29-196 15-254 (255)
104 2lkc_A Translation initiation 100.0 5.8E-28 2E-32 169.6 13.8 156 30-198 5-172 (178)
105 3lvq_E ARF-GAP with SH3 domain 100.0 3.3E-28 1.1E-32 196.4 12.3 163 29-199 318-486 (497)
106 2qu8_A Putative nucleolar GTP- 100.0 1.8E-27 6E-32 173.9 14.3 164 31-198 27-206 (228)
107 3o47_A ADP-ribosylation factor 100.0 3.1E-28 1.1E-32 186.7 10.2 161 30-198 162-328 (329)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 4.3E-27 1.5E-31 178.9 14.4 161 32-197 2-181 (307)
109 1svi_A GTP-binding protein YSX 99.9 3E-27 1E-31 168.4 11.6 159 30-196 20-194 (195)
110 2cxx_A Probable GTP-binding pr 99.9 4.8E-27 1.6E-31 166.6 10.3 155 34-198 2-185 (190)
111 2wjg_A FEOB, ferrous iron tran 99.9 5.1E-27 1.7E-31 166.3 10.3 157 32-198 6-170 (188)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 1.8E-27 6E-32 180.0 6.8 156 35-198 1-175 (331)
113 2dyk_A GTP-binding protein; GT 99.9 1.2E-26 4.1E-31 160.3 10.4 150 34-195 2-160 (161)
114 3iev_A GTP-binding protein ERA 99.9 1.4E-25 4.9E-30 170.5 16.4 164 29-197 6-182 (308)
115 3pqc_A Probable GTP-binding pr 99.9 5.5E-26 1.9E-30 161.7 13.3 159 28-197 18-194 (195)
116 3dpu_A RAB family protein; roc 99.9 8.2E-27 2.8E-31 189.6 9.7 166 29-198 37-209 (535)
117 3a1s_A Iron(II) transport prot 99.9 4.3E-26 1.5E-30 169.2 12.1 156 31-196 3-166 (258)
118 2gj8_A MNME, tRNA modification 99.9 1.3E-26 4.5E-31 162.2 8.8 155 32-197 3-166 (172)
119 4dhe_A Probable GTP-binding pr 99.9 8.4E-26 2.9E-30 164.2 10.1 166 29-198 25-212 (223)
120 3b1v_A Ferrous iron uptake tra 99.9 1.8E-25 6.3E-30 166.8 10.1 153 33-196 3-163 (272)
121 1nrj_B SR-beta, signal recogni 99.9 2.7E-26 9.2E-31 166.3 5.1 146 28-183 7-170 (218)
122 3iby_A Ferrous iron transport 99.9 7.7E-26 2.6E-30 167.6 7.3 151 34-194 2-164 (256)
123 3i8s_A Ferrous iron transport 99.9 6.6E-26 2.3E-30 169.7 6.4 156 32-197 2-169 (274)
124 3k53_A Ferrous iron transport 99.9 5.8E-25 2E-29 164.5 10.1 157 32-197 2-166 (271)
125 3qq5_A Small GTP-binding prote 99.9 1.2E-25 4.1E-30 176.7 5.4 165 23-197 24-196 (423)
126 2hjg_A GTP-binding protein ENG 99.9 3.1E-24 1.1E-28 170.4 11.1 161 31-198 173-350 (436)
127 1lnz_A SPO0B-associated GTP-bi 99.9 1.9E-24 6.4E-29 165.9 9.3 158 35-198 160-331 (342)
128 3gee_A MNME, tRNA modification 99.9 6.3E-24 2.2E-28 169.4 12.7 157 32-196 232-397 (476)
129 1wf3_A GTP-binding protein; GT 99.9 8.1E-24 2.8E-28 160.1 12.5 158 31-197 5-173 (301)
130 2e87_A Hypothetical protein PH 99.9 2.8E-23 9.7E-28 161.0 14.9 161 31-197 165-336 (357)
131 1zcb_A G alpha I/13; GTP-bindi 99.9 8.4E-24 2.9E-28 163.3 11.7 115 83-197 201-353 (362)
132 4dcu_A GTP-binding protein ENG 99.9 6.7E-24 2.3E-28 169.4 11.5 162 30-198 192-370 (456)
133 1cip_A Protein (guanine nucleo 99.9 2.6E-23 8.9E-28 160.1 12.1 115 83-197 193-344 (353)
134 3sjy_A Translation initiation 99.9 2.7E-22 9.1E-27 157.8 16.7 166 29-197 4-192 (403)
135 1s0u_A EIF-2-gamma, translatio 99.9 7.5E-22 2.6E-26 155.5 17.8 161 30-196 5-197 (408)
136 3lxx_A GTPase IMAP family memb 99.9 4E-22 1.4E-26 146.5 13.2 164 29-197 25-214 (239)
137 1xzp_A Probable tRNA modificat 99.9 8.2E-23 2.8E-27 163.1 10.0 152 33-196 243-404 (482)
138 1wb1_A Translation elongation 99.9 4.9E-22 1.7E-26 159.2 14.3 157 30-196 16-188 (482)
139 1ega_A Protein (GTP-binding pr 99.9 5.4E-22 1.9E-26 150.3 13.6 157 32-197 7-175 (301)
140 2ywe_A GTP-binding protein LEP 99.9 1.6E-21 5.4E-26 158.9 16.4 161 31-197 4-184 (600)
141 1kk1_A EIF2gamma; initiation o 99.9 9.9E-22 3.4E-26 154.9 14.7 162 29-196 6-199 (410)
142 3cb4_D GTP-binding protein LEP 99.9 5.5E-22 1.9E-26 161.8 13.6 160 32-197 3-182 (599)
143 2qtf_A Protein HFLX, GTP-bindi 99.9 1.9E-21 6.6E-26 150.5 15.4 161 33-197 178-354 (364)
144 1mky_A Probable GTP-binding pr 99.9 5.5E-22 1.9E-26 157.6 12.5 151 34-197 2-166 (439)
145 3geh_A MNME, tRNA modification 99.9 9.6E-23 3.3E-27 162.1 8.1 154 32-198 223-385 (462)
146 2xtp_A GTPase IMAP family memb 99.9 6E-22 2.1E-26 147.3 11.0 164 29-197 18-208 (260)
147 3lxw_A GTPase IMAP family memb 99.9 8.8E-22 3E-26 145.3 11.7 165 30-197 18-208 (247)
148 3j2k_7 ERF3, eukaryotic polype 99.9 3.5E-21 1.2E-25 152.7 15.2 155 29-189 13-217 (439)
149 3t5d_A Septin-7; GTP-binding p 99.9 2.1E-22 7.2E-27 150.8 7.6 161 30-195 5-202 (274)
150 1azs_C GS-alpha; complex (lyas 99.9 1.6E-21 5.5E-26 151.8 12.7 115 83-197 217-385 (402)
151 3izy_P Translation initiation 99.9 1.4E-23 4.9E-28 168.9 0.5 159 32-196 3-167 (537)
152 3ohm_A Guanine nucleotide-bind 99.9 2.3E-21 7.8E-26 147.3 12.2 116 83-198 167-319 (327)
153 2hjg_A GTP-binding protein ENG 99.9 6.4E-22 2.2E-26 157.1 8.5 153 34-197 4-165 (436)
154 1mky_A Probable GTP-binding pr 99.9 8.9E-21 3E-25 150.7 14.8 161 31-198 178-356 (439)
155 2ged_A SR-beta, signal recogni 99.9 1.3E-21 4.4E-26 139.0 8.8 117 30-156 45-173 (193)
156 3p26_A Elongation factor 1 alp 99.8 2.1E-21 7.2E-26 155.9 9.0 152 30-186 30-227 (483)
157 1d2e_A Elongation factor TU (E 99.8 5.5E-21 1.9E-25 150.0 11.1 160 32-196 2-194 (397)
158 1g7s_A Translation initiation 99.8 2.2E-20 7.6E-25 152.5 14.3 158 32-196 4-217 (594)
159 2xtz_A Guanine nucleotide-bind 99.8 1E-21 3.5E-26 151.1 5.8 117 81-197 181-345 (354)
160 2c78_A Elongation factor TU-A; 99.8 2.6E-21 9E-26 152.3 7.9 162 30-196 8-211 (405)
161 3tr5_A RF-3, peptide chain rel 99.8 1E-20 3.5E-25 152.7 11.4 116 31-153 11-148 (528)
162 1jny_A EF-1-alpha, elongation 99.8 7.1E-22 2.4E-26 156.7 4.4 154 31-188 4-204 (435)
163 4dcu_A GTP-binding protein ENG 99.8 2.2E-21 7.4E-26 154.9 7.0 155 31-196 21-184 (456)
164 2qag_A Septin-2, protein NEDD5 99.8 4.6E-22 1.6E-26 154.1 2.6 161 30-198 34-234 (361)
165 1zun_B Sulfate adenylate trans 99.8 4.1E-20 1.4E-24 146.6 13.8 153 29-187 20-214 (434)
166 2elf_A Protein translation elo 99.8 5.5E-21 1.9E-25 148.4 7.8 145 35-196 23-179 (370)
167 3izq_1 HBS1P, elongation facto 99.8 7.6E-21 2.6E-25 156.0 8.9 153 30-187 164-362 (611)
168 4fid_A G protein alpha subunit 99.8 3.2E-20 1.1E-24 141.5 9.9 115 83-197 161-328 (340)
169 2aka_B Dynamin-1; fusion prote 99.8 5.9E-21 2E-25 144.5 5.4 162 30-194 23-250 (299)
170 1r5b_A Eukaryotic peptide chai 99.8 5.3E-21 1.8E-25 152.8 5.2 155 31-188 41-243 (467)
171 3avx_A Elongation factor TS, e 99.8 7.4E-20 2.5E-24 156.4 11.2 163 29-196 292-485 (1289)
172 1zo1_I IF2, translation initia 99.8 1.4E-21 4.6E-26 156.2 0.1 154 31-194 2-164 (501)
173 1pui_A ENGB, probable GTP-bind 99.8 1.4E-19 4.9E-24 130.1 9.9 157 31-197 24-199 (210)
174 2j69_A Bacterial dynamin-like 99.8 2.5E-19 8.6E-24 149.1 10.9 164 31-197 67-325 (695)
175 3def_A T7I23.11 protein; chlor 99.8 8.6E-19 2.9E-23 130.4 12.5 124 31-157 34-169 (262)
176 1f60_A Elongation factor EEF1A 99.8 1E-19 3.5E-24 145.1 7.4 150 31-186 5-201 (458)
177 2dy1_A Elongation factor G; tr 99.8 1.6E-18 5.4E-23 143.8 13.8 117 31-152 7-139 (665)
178 3t34_A Dynamin-related protein 99.8 1E-19 3.5E-24 141.2 5.3 155 34-190 35-254 (360)
179 1udx_A The GTP-binding protein 99.8 2.2E-18 7.6E-23 135.1 12.3 159 35-198 159-326 (416)
180 3mca_A HBS1, elongation factor 99.8 7.5E-21 2.6E-25 155.6 -1.9 160 30-195 174-395 (592)
181 1jwy_B Dynamin A GTPase domain 99.8 1.2E-18 4.2E-23 132.8 9.3 112 83-197 131-262 (315)
182 2qnr_A Septin-2, protein NEDD5 99.8 1.7E-19 5.8E-24 136.5 4.2 166 29-199 14-216 (301)
183 1dar_A EF-G, elongation factor 99.8 1E-17 3.5E-22 139.4 14.2 115 30-153 9-143 (691)
184 1h65_A Chloroplast outer envel 99.8 8.3E-18 2.9E-22 125.6 11.3 123 31-156 37-171 (270)
185 2h5e_A Peptide chain release f 99.7 4.8E-17 1.6E-21 131.5 15.6 118 31-153 11-148 (529)
186 2qag_C Septin-7; cell cycle, c 99.7 4.2E-18 1.4E-22 133.6 9.2 160 29-195 27-225 (418)
187 1wxq_A GTP-binding protein; st 99.7 3.5E-18 1.2E-22 133.7 6.8 86 34-119 1-114 (397)
188 2rdo_7 EF-G, elongation factor 99.7 1.8E-16 6.3E-21 132.1 17.3 119 31-153 8-148 (704)
189 1u0l_A Probable GTPase ENGC; p 99.7 1.4E-18 4.9E-23 131.5 4.0 134 48-193 32-169 (301)
190 2xex_A Elongation factor G; GT 99.7 1.5E-16 5.3E-21 132.4 15.4 116 31-153 8-141 (693)
191 2hf9_A Probable hydrogenase ni 99.7 8.3E-19 2.8E-23 127.5 -2.7 156 32-198 37-225 (226)
192 2wsm_A Hydrogenase expression/ 99.7 6.5E-17 2.2E-21 117.1 7.0 156 32-198 29-215 (221)
193 2x2e_A Dynamin-1; nitration, h 99.7 8.1E-18 2.8E-22 130.1 1.6 160 31-193 29-254 (353)
194 1jal_A YCHF protein; nucleotid 99.7 2.9E-15 9.9E-20 115.2 14.8 144 34-179 3-239 (363)
195 3p32_A Probable GTPase RV1496/ 99.6 8.7E-17 3E-21 124.4 4.6 103 83-197 172-284 (355)
196 3vqt_A RF-3, peptide chain rel 99.6 5.5E-15 1.9E-19 120.0 14.0 115 32-153 30-166 (548)
197 2qpt_A EH domain-containing pr 99.6 5.8E-16 2E-20 125.8 7.0 121 30-154 62-233 (550)
198 1n0u_A EF-2, elongation factor 99.6 1.2E-15 4.3E-20 129.4 7.1 118 31-152 17-163 (842)
199 4a9a_A Ribosome-interacting GT 99.6 3.1E-14 1.1E-18 110.1 13.8 158 30-191 69-242 (376)
200 2www_A Methylmalonic aciduria 99.6 9.2E-15 3.2E-19 112.7 10.9 102 83-196 167-278 (349)
201 2dby_A GTP-binding protein; GD 99.6 1.1E-14 3.6E-19 112.7 10.1 83 34-118 2-111 (368)
202 1yrb_A ATP(GTP)binding protein 99.6 2.7E-14 9.2E-19 105.9 10.7 110 83-197 109-257 (262)
203 2p67_A LAO/AO transport system 99.5 3.8E-15 1.3E-19 114.6 5.5 103 83-196 149-260 (341)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 5.6E-15 1.9E-19 122.9 6.6 156 31-193 49-274 (772)
205 2qm8_A GTPase/ATPase; G protei 99.5 8E-14 2.7E-18 107.0 8.3 103 83-196 148-260 (337)
206 3j25_A Tetracycline resistance 99.5 1.6E-14 5.5E-19 119.4 4.0 114 35-153 4-133 (638)
207 4fn5_A EF-G 1, elongation fact 99.5 1.8E-12 6.1E-17 108.5 15.6 118 31-152 11-150 (709)
208 2yv5_A YJEQ protein; hydrolase 99.5 1.7E-13 5.7E-18 103.7 8.3 98 93-193 66-165 (302)
209 3l82_B F-box only protein 4; T 99.4 4.3E-13 1.5E-17 94.6 5.1 106 91-199 110-225 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3.5E-11 1.2E-15 93.6 12.5 87 32-118 19-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 1.9E-12 6.6E-17 100.5 4.9 89 31-119 20-129 (396)
212 3l2o_B F-box only protein 4; s 99.2 1.3E-11 4.5E-16 91.1 5.8 108 90-199 194-310 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 1.9E-11 6.6E-16 94.8 -0.5 139 34-182 163-316 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 9.9E-10 3.4E-14 86.1 8.7 144 31-179 40-218 (427)
215 2j37_W Signal recognition part 99.0 1.4E-10 4.7E-15 93.0 3.1 153 31-194 99-310 (504)
216 3h2y_A GTPase family protein; 99.0 9.1E-10 3.1E-14 85.4 7.5 97 92-195 55-158 (368)
217 3sop_A Neuronal-specific septi 99.0 2.6E-09 8.8E-14 79.4 9.4 138 33-175 2-178 (270)
218 1tq4_A IIGP1, interferon-induc 99.0 1.5E-08 5E-13 79.5 13.2 156 34-197 70-253 (413)
219 3h2y_A GTPase family protein; 98.9 2.2E-11 7.5E-16 94.5 -3.6 134 34-177 161-310 (368)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 2.3E-09 8E-14 83.1 4.1 98 92-196 57-161 (369)
221 1puj_A YLQF, conserved hypothe 98.8 4.9E-09 1.7E-13 78.4 5.0 100 87-196 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.6 5.5E-08 1.9E-12 72.7 5.3 58 31-93 118-175 (282)
223 3dm5_A SRP54, signal recogniti 98.5 9.8E-08 3.4E-12 75.2 5.9 86 83-178 183-274 (443)
224 3cnl_A YLQF, putative uncharac 98.5 4.6E-08 1.6E-12 72.3 3.0 56 34-94 100-155 (262)
225 1f5n_A Interferon-induced guan 98.4 7.9E-07 2.7E-11 72.6 7.1 65 30-94 35-102 (592)
226 2v3c_C SRP54, signal recogniti 98.3 3.2E-06 1.1E-10 66.8 9.6 84 83-177 181-272 (432)
227 3szr_A Interferon-induced GTP- 98.3 1.4E-06 4.7E-11 71.9 7.5 23 35-57 47-69 (608)
228 3cnl_A YLQF, putative uncharac 98.3 1.6E-07 5.4E-12 69.4 1.6 93 90-193 4-97 (262)
229 3kl4_A SRP54, signal recogniti 98.3 1.8E-07 6.2E-12 73.7 1.7 86 83-178 180-273 (433)
230 1t9h_A YLOQ, probable GTPase E 98.3 1.9E-07 6.6E-12 70.4 1.7 91 97-190 77-170 (307)
231 1j8m_F SRP54, signal recogniti 98.2 2.6E-06 8.9E-11 64.1 6.4 90 83-185 181-279 (297)
232 2rcn_A Probable GTPase ENGC; Y 98.0 1.2E-05 4.2E-10 61.8 7.4 87 101-191 125-213 (358)
233 3e70_C DPA, signal recognition 98.0 1E-05 3.5E-10 61.6 6.2 88 84-184 213-307 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.8 1.4E-06 4.6E-11 69.8 -1.3 102 31-135 37-148 (469)
235 3q5d_A Atlastin-1; G protein, 97.8 4.8E-05 1.6E-09 60.2 6.3 25 31-55 65-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.7 2.3E-05 7.8E-10 54.4 3.3 23 34-56 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.6 4.1E-05 1.4E-09 53.1 3.1 22 35-56 7-28 (180)
238 1lvg_A Guanylate kinase, GMP k 97.5 4.7E-05 1.6E-09 53.7 3.1 22 35-56 6-27 (198)
239 2rcn_A Probable GTPase ENGC; Y 97.5 9.9E-05 3.4E-09 56.8 4.6 24 35-58 217-240 (358)
240 1t9h_A YLOQ, probable GTPase E 97.4 2.4E-05 8.1E-10 59.0 0.6 23 35-57 175-197 (307)
241 3tr0_A Guanylate kinase, GMP k 97.4 7.4E-05 2.5E-09 52.6 3.1 22 35-56 9-30 (205)
242 3a00_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 52.0 3.0 21 36-56 4-24 (186)
243 2xxa_A Signal recognition part 97.4 0.00083 2.9E-08 53.1 9.2 83 83-176 184-273 (433)
244 1zp6_A Hypothetical protein AT 97.4 7.9E-05 2.7E-09 51.9 3.0 22 35-56 11-32 (191)
245 1znw_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 52.8 3.1 22 35-56 22-43 (207)
246 1s96_A Guanylate kinase, GMP k 97.4 9E-05 3.1E-09 53.1 3.1 23 35-57 18-40 (219)
247 2cdn_A Adenylate kinase; phosp 97.4 0.00013 4.4E-09 51.4 3.8 25 31-55 18-42 (201)
248 1z6g_A Guanylate kinase; struc 97.4 9.4E-05 3.2E-09 53.0 3.1 22 35-56 25-46 (218)
249 3ney_A 55 kDa erythrocyte memb 97.4 0.00011 3.6E-09 51.8 3.1 22 35-56 21-42 (197)
250 4gp7_A Metallophosphoesterase; 97.4 8.6E-05 2.9E-09 51.0 2.5 20 35-54 11-30 (171)
251 3c8u_A Fructokinase; YP_612366 97.4 0.00012 4.1E-09 51.9 3.4 25 32-56 21-45 (208)
252 2yv5_A YJEQ protein; hydrolase 97.3 0.00047 1.6E-08 51.9 6.6 22 35-57 167-188 (302)
253 3cwq_A Para family chromosome 97.3 0.0012 4.1E-08 46.8 8.3 85 83-174 68-153 (209)
254 3umf_A Adenylate kinase; rossm 97.3 0.00018 6.1E-09 51.5 3.9 21 35-55 31-51 (217)
255 1htw_A HI0065; nucleotide-bind 97.3 0.00013 4.5E-09 49.5 3.1 23 35-57 35-57 (158)
256 3tau_A Guanylate kinase, GMP k 97.3 0.00013 4.4E-09 51.8 3.1 22 35-56 10-31 (208)
257 3tif_A Uncharacterized ABC tra 97.3 0.00011 3.9E-09 53.2 2.8 22 35-56 33-54 (235)
258 1ex7_A Guanylate kinase; subst 97.3 0.00015 5.2E-09 50.5 3.2 21 36-56 4-24 (186)
259 1kag_A SKI, shikimate kinase I 97.3 0.00015 5.1E-09 49.6 3.1 22 35-56 6-27 (173)
260 2pcj_A ABC transporter, lipopr 97.3 0.00014 4.7E-09 52.4 2.7 22 35-56 32-53 (224)
261 2onk_A Molybdate/tungstate ABC 97.3 0.00017 5.9E-09 52.4 3.2 22 35-56 26-47 (240)
262 3lw7_A Adenylate kinase relate 97.2 0.00018 6.3E-09 49.0 3.2 20 34-53 2-21 (179)
263 2qor_A Guanylate kinase; phosp 97.2 0.00018 6.2E-09 50.8 3.1 23 34-56 13-35 (204)
264 2bdt_A BH3686; alpha-beta prot 97.2 0.00018 6.2E-09 50.0 3.1 21 35-55 4-24 (189)
265 2j41_A Guanylate kinase; GMP, 97.2 0.00018 6.1E-09 50.7 3.1 23 35-57 8-30 (207)
266 4eun_A Thermoresistant glucoki 97.2 0.00019 6.6E-09 50.5 3.1 22 34-55 30-51 (200)
267 1sgw_A Putative ABC transporte 97.2 0.00018 6.1E-09 51.4 2.9 22 35-56 37-58 (214)
268 2i3b_A HCR-ntpase, human cance 97.2 0.0002 7E-09 50.1 3.1 22 35-56 3-24 (189)
269 3gfo_A Cobalt import ATP-bindi 97.2 0.00018 6E-09 53.4 2.9 23 35-57 36-58 (275)
270 3asz_A Uridine kinase; cytidin 97.2 0.00021 7.3E-09 50.6 3.3 23 34-56 7-29 (211)
271 1b0u_A Histidine permease; ABC 97.2 0.00018 6.1E-09 53.0 2.9 22 35-56 34-55 (262)
272 1ly1_A Polynucleotide kinase; 97.2 0.00026 8.8E-09 48.7 3.5 22 34-55 3-24 (181)
273 2cbz_A Multidrug resistance-as 97.2 0.00019 6.4E-09 52.1 2.8 22 35-56 33-54 (237)
274 2bbw_A Adenylate kinase 4, AK4 97.2 0.00025 8.4E-09 51.6 3.4 21 34-54 28-48 (246)
275 3kb2_A SPBC2 prophage-derived 97.2 0.00023 7.7E-09 48.6 3.0 22 35-56 3-24 (173)
276 3fb4_A Adenylate kinase; psych 97.2 0.00023 8E-09 50.6 3.2 22 34-55 1-22 (216)
277 1g6h_A High-affinity branched- 97.2 0.0002 6.8E-09 52.6 2.8 23 35-57 35-57 (257)
278 2eyu_A Twitching motility prot 97.2 0.00022 7.7E-09 52.5 3.1 22 35-56 27-48 (261)
279 4g1u_C Hemin import ATP-bindin 97.2 0.0002 7E-09 52.9 2.9 23 35-57 39-61 (266)
280 2pze_A Cystic fibrosis transme 97.2 0.00022 7.4E-09 51.5 2.9 22 35-56 36-57 (229)
281 1mv5_A LMRA, multidrug resista 97.2 0.00023 7.9E-09 51.8 3.1 22 35-56 30-51 (243)
282 3dl0_A Adenylate kinase; phosp 97.2 0.00026 9E-09 50.3 3.3 22 34-55 1-22 (216)
283 2olj_A Amino acid ABC transpor 97.2 0.00022 7.4E-09 52.6 2.9 22 35-56 52-73 (263)
284 2ff7_A Alpha-hemolysin translo 97.1 0.00022 7.4E-09 52.1 2.8 22 35-56 37-58 (247)
285 2v9p_A Replication protein E1; 97.1 0.00024 8.3E-09 53.4 3.2 21 35-55 128-148 (305)
286 1knq_A Gluconate kinase; ALFA/ 97.1 0.00036 1.2E-08 47.9 3.8 22 34-55 9-30 (175)
287 1ji0_A ABC transporter; ATP bi 97.1 0.00022 7.6E-09 51.8 2.8 22 35-56 34-55 (240)
288 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00025 8.6E-09 51.9 3.2 22 35-56 31-52 (250)
289 1vpl_A ABC transporter, ATP-bi 97.1 0.00023 7.9E-09 52.3 2.9 22 35-56 43-64 (256)
290 2zu0_C Probable ATP-dependent 97.1 0.00027 9.2E-09 52.2 3.2 22 35-56 48-69 (267)
291 2qi9_C Vitamin B12 import ATP- 97.1 0.00024 8.3E-09 51.9 2.9 22 35-56 28-49 (249)
292 3b85_A Phosphate starvation-in 97.1 0.00019 6.5E-09 51.0 2.3 22 35-56 24-45 (208)
293 3ec2_A DNA replication protein 97.1 0.00022 7.6E-09 49.2 2.6 23 34-56 39-61 (180)
294 3sr0_A Adenylate kinase; phosp 97.1 0.00032 1.1E-08 49.8 3.3 22 34-55 1-22 (206)
295 2if2_A Dephospho-COA kinase; a 97.1 0.00029 9.8E-09 49.6 3.1 21 35-55 3-23 (204)
296 3t61_A Gluconokinase; PSI-biol 97.1 0.00031 1.1E-08 49.4 3.2 23 34-56 19-41 (202)
297 2ghi_A Transport protein; mult 97.1 0.00025 8.6E-09 52.2 2.8 22 35-56 48-69 (260)
298 3vaa_A Shikimate kinase, SK; s 97.1 0.00032 1.1E-08 49.3 3.3 21 35-55 27-47 (199)
299 2ihy_A ABC transporter, ATP-bi 97.1 0.00029 9.8E-09 52.4 3.1 22 35-56 49-70 (279)
300 2ixe_A Antigen peptide transpo 97.1 0.00026 9E-09 52.4 2.8 22 35-56 47-68 (271)
301 1cke_A CK, MSSA, protein (cyti 97.1 0.00033 1.1E-08 50.1 3.3 22 34-55 6-27 (227)
302 1qhx_A CPT, protein (chloramph 97.1 0.00031 1.1E-08 48.3 3.0 22 35-56 5-26 (178)
303 3iij_A Coilin-interacting nucl 97.1 0.00041 1.4E-08 47.8 3.6 23 33-55 11-33 (180)
304 3uie_A Adenylyl-sulfate kinase 97.1 0.00032 1.1E-08 49.4 3.1 24 33-56 25-48 (200)
305 2nq2_C Hypothetical ABC transp 97.1 0.00029 9.9E-09 51.6 2.8 23 35-57 33-55 (253)
306 3aez_A Pantothenate kinase; tr 97.1 0.00052 1.8E-08 51.9 4.3 26 31-56 88-113 (312)
307 2yz2_A Putative ABC transporte 97.1 0.0003 1E-08 52.0 2.8 22 35-56 35-56 (266)
308 2jaq_A Deoxyguanosine kinase; 97.1 0.00038 1.3E-08 48.8 3.3 21 35-55 2-22 (205)
309 1u0l_A Probable GTPase ENGC; p 97.0 0.00038 1.3E-08 52.3 3.4 24 35-58 171-194 (301)
310 1jjv_A Dephospho-COA kinase; P 97.0 0.00042 1.5E-08 48.9 3.5 22 34-55 3-24 (206)
311 1uf9_A TT1252 protein; P-loop, 97.0 0.00042 1.4E-08 48.6 3.4 26 31-56 6-31 (203)
312 3cm0_A Adenylate kinase; ATP-b 97.0 0.00049 1.7E-08 47.6 3.7 23 33-55 4-26 (186)
313 1np6_A Molybdopterin-guanine d 97.0 0.00039 1.3E-08 48.0 3.1 22 35-56 8-29 (174)
314 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.5E-09 51.4 1.9 22 35-56 29-51 (231)
315 3tlx_A Adenylate kinase 2; str 97.0 0.00048 1.6E-08 50.1 3.7 24 32-55 28-51 (243)
316 2ehv_A Hypothetical protein PH 97.0 0.00038 1.3E-08 50.4 3.2 20 35-54 32-51 (251)
317 2rhm_A Putative kinase; P-loop 97.0 0.00046 1.6E-08 48.0 3.5 22 34-55 6-27 (193)
318 4a74_A DNA repair and recombin 97.0 0.00035 1.2E-08 50.0 2.9 22 35-56 27-48 (231)
319 3end_A Light-independent proto 97.0 0.03 1E-06 41.9 13.6 84 83-175 157-242 (307)
320 2pjz_A Hypothetical protein ST 97.0 0.00038 1.3E-08 51.3 3.1 23 35-57 32-54 (263)
321 1nks_A Adenylate kinase; therm 97.0 0.00045 1.5E-08 47.9 3.3 21 35-55 3-23 (194)
322 1e4v_A Adenylate kinase; trans 97.0 0.00043 1.5E-08 49.2 3.1 22 34-55 1-22 (214)
323 1y63_A LMAJ004144AAA protein; 97.0 0.00052 1.8E-08 47.6 3.5 24 33-56 10-33 (184)
324 1kht_A Adenylate kinase; phosp 97.0 0.0005 1.7E-08 47.7 3.4 22 34-55 4-25 (192)
325 3tqc_A Pantothenate kinase; bi 97.0 0.00066 2.2E-08 51.5 4.2 26 30-55 89-114 (321)
326 1via_A Shikimate kinase; struc 97.0 0.00047 1.6E-08 47.3 3.1 21 35-55 6-26 (175)
327 2qt1_A Nicotinamide riboside k 97.0 0.00063 2.2E-08 48.0 3.8 24 33-56 21-44 (207)
328 1ukz_A Uridylate kinase; trans 97.0 0.00078 2.7E-08 47.3 4.2 23 33-55 15-37 (203)
329 3trf_A Shikimate kinase, SK; a 97.0 0.0005 1.7E-08 47.6 3.1 22 34-55 6-27 (185)
330 1aky_A Adenylate kinase; ATP:A 97.0 0.00054 1.9E-08 48.9 3.4 23 33-55 4-26 (220)
331 2chg_A Replication factor C sm 96.9 0.0012 4.2E-08 46.5 5.3 22 35-56 40-61 (226)
332 2f1r_A Molybdopterin-guanine d 96.9 0.00023 7.7E-09 49.0 1.3 22 35-56 4-25 (171)
333 1tev_A UMP-CMP kinase; ploop, 96.9 0.0006 2.1E-08 47.4 3.5 23 33-55 3-25 (196)
334 2jeo_A Uridine-cytidine kinase 96.9 0.00057 2E-08 49.7 3.5 22 34-55 26-47 (245)
335 1lw7_A Transcriptional regulat 96.9 0.00042 1.4E-08 53.5 2.9 24 33-56 170-193 (365)
336 3nh6_A ATP-binding cassette SU 96.9 0.0003 1E-08 53.0 2.0 22 35-56 82-103 (306)
337 3jvv_A Twitching mobility prot 96.9 0.00046 1.6E-08 53.1 3.1 22 35-56 125-146 (356)
338 2x8a_A Nuclear valosin-contain 96.9 0.00048 1.6E-08 51.1 3.1 21 36-56 47-67 (274)
339 2pt5_A Shikimate kinase, SK; a 96.9 0.00056 1.9E-08 46.5 3.2 21 35-55 2-22 (168)
340 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00045 1.5E-08 53.1 3.0 23 35-57 32-54 (359)
341 2kjq_A DNAA-related protein; s 96.9 0.00034 1.2E-08 47.0 2.0 22 35-56 38-59 (149)
342 2plr_A DTMP kinase, probable t 96.9 0.00064 2.2E-08 47.9 3.5 22 34-55 5-26 (213)
343 2bbs_A Cystic fibrosis transme 96.9 0.00044 1.5E-08 51.7 2.7 22 35-56 66-87 (290)
344 3tui_C Methionine import ATP-b 96.9 0.00055 1.9E-08 52.8 3.2 23 35-57 56-78 (366)
345 1z47_A CYSA, putative ABC-tran 96.9 0.00054 1.9E-08 52.6 3.2 23 35-57 43-65 (355)
346 1gvn_B Zeta; postsegregational 96.9 0.00067 2.3E-08 50.6 3.6 24 32-55 32-55 (287)
347 1ak2_A Adenylate kinase isoenz 96.9 0.0007 2.4E-08 48.8 3.5 23 33-55 16-38 (233)
348 1odf_A YGR205W, hypothetical 3 96.9 0.00081 2.8E-08 50.3 3.9 25 31-55 29-53 (290)
349 1ixz_A ATP-dependent metallopr 96.9 0.00058 2E-08 49.8 3.1 22 35-56 51-72 (254)
350 2yyz_A Sugar ABC transporter, 96.9 0.00058 2E-08 52.6 3.2 23 35-57 31-53 (359)
351 2it1_A 362AA long hypothetical 96.9 0.0006 2.1E-08 52.6 3.2 23 35-57 31-53 (362)
352 3rlf_A Maltose/maltodextrin im 96.9 0.00061 2.1E-08 52.8 3.2 23 35-57 31-53 (381)
353 3co5_A Putative two-component 96.9 0.00095 3.2E-08 44.3 3.8 23 34-56 28-50 (143)
354 1zak_A Adenylate kinase; ATP:A 96.9 0.00062 2.1E-08 48.6 3.1 22 34-55 6-27 (222)
355 1zd8_A GTP:AMP phosphotransfer 96.9 0.00066 2.2E-08 48.7 3.2 22 34-55 8-29 (227)
356 2xb4_A Adenylate kinase; ATP-b 96.8 0.00074 2.5E-08 48.4 3.4 21 35-55 2-22 (223)
357 1jbk_A CLPB protein; beta barr 96.8 0.00075 2.6E-08 46.5 3.3 23 34-56 44-66 (195)
358 2f6r_A COA synthase, bifunctio 96.8 0.001 3.6E-08 49.4 4.2 25 31-55 73-97 (281)
359 2c95_A Adenylate kinase 1; tra 96.8 0.00075 2.6E-08 47.0 3.3 22 34-55 10-31 (196)
360 1g29_1 MALK, maltose transport 96.8 0.00065 2.2E-08 52.6 3.2 23 35-57 31-53 (372)
361 1v43_A Sugar-binding transport 96.8 0.00067 2.3E-08 52.5 3.2 23 35-57 39-61 (372)
362 2gza_A Type IV secretion syste 96.8 0.00059 2E-08 52.7 2.9 22 35-56 177-198 (361)
363 1sxj_E Activator 1 40 kDa subu 96.8 0.0028 9.4E-08 48.4 6.7 21 36-56 39-59 (354)
364 2p5t_B PEZT; postsegregational 96.8 0.00068 2.3E-08 49.6 3.1 26 31-56 30-55 (253)
365 2ze6_A Isopentenyl transferase 96.8 0.00071 2.4E-08 49.5 3.1 21 35-55 3-23 (253)
366 2yvu_A Probable adenylyl-sulfa 96.8 0.0011 3.7E-08 45.9 4.0 24 32-55 12-35 (186)
367 1rj9_A FTSY, signal recognitio 96.8 0.00068 2.3E-08 51.0 3.1 84 84-178 186-282 (304)
368 2wwf_A Thymidilate kinase, put 96.8 0.00083 2.9E-08 47.4 3.4 23 33-55 10-32 (212)
369 2v54_A DTMP kinase, thymidylat 96.8 0.00087 3E-08 47.0 3.5 23 34-56 5-27 (204)
370 1rz3_A Hypothetical protein rb 96.8 0.00097 3.3E-08 46.9 3.6 23 33-55 22-44 (201)
371 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00056 1.9E-08 52.1 2.5 22 35-56 173-194 (330)
372 2ewv_A Twitching motility prot 96.8 0.00074 2.5E-08 52.3 3.2 22 35-56 138-159 (372)
373 1sq5_A Pantothenate kinase; P- 96.8 0.00094 3.2E-08 50.3 3.6 24 33-56 80-103 (308)
374 1nn5_A Similar to deoxythymidy 96.8 0.00089 3E-08 47.3 3.3 23 33-55 9-31 (215)
375 4e22_A Cytidylate kinase; P-lo 96.8 0.00095 3.3E-08 48.8 3.5 22 33-54 27-48 (252)
376 3b9q_A Chloroplast SRP recepto 96.8 0.0008 2.7E-08 50.6 3.1 22 34-55 101-122 (302)
377 3d31_A Sulfate/molybdate ABC t 96.8 0.00054 1.8E-08 52.5 2.2 23 35-57 28-50 (348)
378 1p9r_A General secretion pathw 96.8 0.00077 2.6E-08 53.0 3.1 22 35-56 169-190 (418)
379 2pbr_A DTMP kinase, thymidylat 96.7 0.00095 3.2E-08 46.3 3.2 21 35-55 2-22 (195)
380 2bwj_A Adenylate kinase 5; pho 96.7 0.00084 2.9E-08 46.9 3.0 23 33-55 12-34 (199)
381 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0041 1.4E-07 49.2 7.1 24 31-54 65-88 (457)
382 1in4_A RUVB, holliday junction 96.7 0.00081 2.8E-08 51.3 3.1 22 35-56 53-74 (334)
383 1iy2_A ATP-dependent metallopr 96.7 0.00087 3E-08 49.6 3.1 22 35-56 75-96 (278)
384 3r20_A Cytidylate kinase; stru 96.7 0.00098 3.4E-08 48.1 3.2 24 32-55 8-31 (233)
385 3be4_A Adenylate kinase; malar 96.7 0.00096 3.3E-08 47.5 3.2 22 34-55 6-27 (217)
386 1xjc_A MOBB protein homolog; s 96.7 0.001 3.5E-08 45.6 3.1 22 35-56 6-27 (169)
387 1qf9_A UMP/CMP kinase, protein 96.7 0.0012 4.3E-08 45.7 3.7 22 34-55 7-28 (194)
388 1vht_A Dephospho-COA kinase; s 96.7 0.0012 3.9E-08 47.0 3.5 23 33-55 4-26 (218)
389 2iyv_A Shikimate kinase, SK; t 96.7 0.00099 3.4E-08 46.0 3.0 21 35-55 4-24 (184)
390 3gd7_A Fusion complex of cysti 96.7 0.00087 3E-08 52.2 3.0 22 35-56 49-70 (390)
391 1uj2_A Uridine-cytidine kinase 96.7 0.0011 3.7E-08 48.4 3.3 24 32-55 21-44 (252)
392 1e6c_A Shikimate kinase; phosp 96.7 0.001 3.5E-08 45.4 3.0 21 35-55 4-24 (173)
393 2oap_1 GSPE-2, type II secreti 96.7 0.00085 2.9E-08 54.2 2.9 23 35-57 262-284 (511)
394 2z0h_A DTMP kinase, thymidylat 96.7 0.0011 3.9E-08 46.1 3.2 22 35-56 2-23 (197)
395 1gtv_A TMK, thymidylate kinase 96.7 0.00039 1.3E-08 49.2 0.7 21 35-55 2-22 (214)
396 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00091 3.1E-08 53.3 2.9 22 35-56 140-161 (460)
397 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0011 3.7E-08 47.4 3.1 21 35-55 25-45 (235)
398 3kta_A Chromosome segregation 96.7 0.0011 3.8E-08 45.7 3.0 22 35-56 28-49 (182)
399 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.4E-08 44.7 3.2 21 35-55 9-29 (168)
400 1oxx_K GLCV, glucose, ABC tran 96.6 0.00054 1.9E-08 52.6 1.4 23 35-57 33-55 (353)
401 2p65_A Hypothetical protein PF 96.6 0.0009 3.1E-08 45.9 2.4 23 34-56 44-66 (187)
402 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0014 4.9E-08 48.1 3.6 22 34-55 5-26 (260)
403 1lv7_A FTSH; alpha/beta domain 96.6 0.0013 4.3E-08 48.1 3.3 22 35-56 47-68 (257)
404 2pez_A Bifunctional 3'-phospho 96.6 0.0015 5.2E-08 44.9 3.5 22 34-55 6-27 (179)
405 2vli_A Antibiotic resistance p 96.6 0.00077 2.6E-08 46.4 2.0 22 34-55 6-27 (183)
406 2w58_A DNAI, primosome compone 96.6 0.0015 5E-08 45.8 3.2 23 34-56 55-77 (202)
407 2vp4_A Deoxynucleoside kinase; 96.6 0.00086 3E-08 48.3 2.1 24 33-56 20-43 (230)
408 3bos_A Putative DNA replicatio 96.6 0.0014 4.9E-08 46.9 3.2 24 33-56 52-75 (242)
409 2og2_A Putative signal recogni 96.6 0.0013 4.5E-08 50.6 3.1 22 34-55 158-179 (359)
410 3nwj_A ATSK2; P loop, shikimat 96.5 0.0014 4.8E-08 47.9 3.0 22 34-55 49-70 (250)
411 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0016 5.3E-08 43.7 2.9 20 36-55 26-45 (149)
412 2yhs_A FTSY, cell division pro 96.5 0.0015 5E-08 52.3 3.1 85 83-178 376-473 (503)
413 1cr0_A DNA primase/helicase; R 96.5 0.0014 4.8E-08 48.9 2.9 22 35-56 37-58 (296)
414 4eaq_A DTMP kinase, thymidylat 96.5 0.0025 8.6E-08 45.9 4.1 25 32-56 25-49 (229)
415 2obl_A ESCN; ATPase, hydrolase 96.5 0.0016 5.4E-08 50.0 3.1 23 35-57 73-95 (347)
416 1nij_A Hypothetical protein YJ 96.5 0.0012 4E-08 50.1 2.3 23 35-57 6-28 (318)
417 2cvh_A DNA repair and recombin 96.5 0.0017 5.9E-08 46.0 3.1 21 35-55 22-42 (220)
418 1tue_A Replication protein E1; 96.5 0.0013 4.6E-08 46.4 2.4 21 35-55 60-80 (212)
419 3n70_A Transport activator; si 96.5 0.002 6.8E-08 42.8 3.2 23 34-56 25-47 (145)
420 1n0w_A DNA repair protein RAD5 96.5 0.0017 6E-08 46.7 3.1 22 35-56 26-47 (243)
421 1m7g_A Adenylylsulfate kinase; 96.5 0.0022 7.5E-08 45.4 3.6 23 33-55 25-47 (211)
422 3t15_A Ribulose bisphosphate c 96.5 0.0018 6.2E-08 48.4 3.2 24 33-56 36-59 (293)
423 1yqt_A RNAse L inhibitor; ATP- 96.4 0.002 6.8E-08 52.4 3.4 23 35-57 49-71 (538)
424 3h4m_A Proteasome-activating n 96.4 0.0021 7.3E-08 47.5 3.2 23 34-56 52-74 (285)
425 3euj_A Chromosome partition pr 96.4 0.002 6.7E-08 51.6 3.1 21 35-55 31-51 (483)
426 1svm_A Large T antigen; AAA+ f 96.4 0.002 6.8E-08 50.0 3.1 21 35-55 171-191 (377)
427 2grj_A Dephospho-COA kinase; T 96.4 0.0028 9.7E-08 44.3 3.6 26 31-56 10-35 (192)
428 3b9p_A CG5977-PA, isoform A; A 96.4 0.0022 7.4E-08 47.8 3.2 24 33-56 54-77 (297)
429 1ltq_A Polynucleotide kinase; 96.3 0.0025 8.7E-08 47.6 3.5 22 34-55 3-24 (301)
430 3syl_A Protein CBBX; photosynt 96.3 0.0027 9.2E-08 47.5 3.7 24 32-55 66-89 (309)
431 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0027 9.2E-08 46.3 3.5 23 34-56 40-62 (262)
432 1njg_A DNA polymerase III subu 96.3 0.0023 8E-08 45.6 3.1 21 35-55 47-67 (250)
433 3uc9_A Increased recombination 96.3 0.0023 7.8E-08 45.8 2.8 25 32-56 28-52 (233)
434 2dpy_A FLII, flagellum-specifi 96.3 0.0023 7.8E-08 50.7 3.1 23 35-57 159-181 (438)
435 3ozx_A RNAse L inhibitor; ATP 96.3 0.0021 7.3E-08 52.2 2.9 23 35-57 27-49 (538)
436 3cf0_A Transitional endoplasmi 96.3 0.0026 9E-08 47.7 3.2 22 35-56 51-72 (301)
437 3b60_A Lipid A export ATP-bind 96.3 0.0022 7.4E-08 52.7 2.9 22 35-56 371-392 (582)
438 3b5x_A Lipid A export ATP-bind 96.3 0.0025 8.5E-08 52.3 3.2 22 35-56 371-392 (582)
439 1d2n_A N-ethylmaleimide-sensit 96.2 0.0039 1.3E-07 45.9 4.0 26 31-56 62-87 (272)
440 3j16_B RLI1P; ribosome recycli 96.2 0.0026 8.8E-08 52.4 3.2 23 35-57 105-127 (608)
441 2qmh_A HPR kinase/phosphorylas 96.2 0.003 1E-07 44.3 3.1 23 34-56 35-57 (205)
442 4fcw_A Chaperone protein CLPB; 96.2 0.0042 1.4E-07 46.5 4.0 23 34-56 48-70 (311)
443 1l8q_A Chromosomal replication 96.2 0.0028 9.6E-08 47.9 3.0 23 34-56 38-60 (324)
444 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.003 1E-07 48.8 3.2 19 36-54 26-44 (365)
445 1nlf_A Regulatory protein REPA 96.2 0.0027 9.4E-08 47.0 2.9 21 35-55 32-52 (279)
446 1q3t_A Cytidylate kinase; nucl 96.2 0.0037 1.3E-07 45.0 3.4 24 32-55 15-38 (236)
447 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0034 1.2E-07 51.0 3.4 23 35-57 314-336 (538)
448 4dzz_A Plasmid partitioning pr 96.1 0.0071 2.4E-07 42.3 4.7 85 83-174 76-162 (206)
449 3ake_A Cytidylate kinase; CMP 96.1 0.0038 1.3E-07 43.8 3.2 21 35-55 4-24 (208)
450 3ozx_A RNAse L inhibitor; ATP 96.1 0.003 1E-07 51.3 2.9 23 35-57 296-318 (538)
451 3bk7_A ABC transporter ATP-bin 96.1 0.0032 1.1E-07 51.9 3.1 23 35-57 119-141 (607)
452 3bk7_A ABC transporter ATP-bin 96.1 0.0034 1.2E-07 51.8 3.2 23 35-57 384-406 (607)
453 1ofh_A ATP-dependent HSL prote 96.1 0.0036 1.2E-07 46.8 3.1 23 34-56 51-73 (310)
454 3gmt_A Adenylate kinase; ssgci 96.1 0.0042 1.4E-07 44.7 3.3 25 31-55 6-30 (230)
455 3zvl_A Bifunctional polynucleo 96.1 0.008 2.7E-07 47.2 5.2 24 33-56 258-281 (416)
456 2yl4_A ATP-binding cassette SU 96.1 0.0022 7.7E-08 52.8 2.1 22 35-56 372-393 (595)
457 1p5z_B DCK, deoxycytidine kina 96.1 0.0023 7.8E-08 47.0 1.9 26 31-56 22-47 (263)
458 4b4t_K 26S protease regulatory 96.0 0.0037 1.3E-07 49.3 3.1 22 35-56 208-229 (428)
459 2qby_A CDC6 homolog 1, cell di 96.0 0.0034 1.2E-07 48.2 2.9 23 34-56 46-68 (386)
460 3qf4_B Uncharacterized ABC tra 96.0 0.0025 8.7E-08 52.5 2.2 22 35-56 383-404 (598)
461 3eie_A Vacuolar protein sortin 96.0 0.004 1.4E-07 47.1 3.2 24 33-56 51-74 (322)
462 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0041 1.4E-07 47.2 3.2 23 34-56 46-68 (322)
463 3u61_B DNA polymerase accessor 96.0 0.057 2E-06 40.6 9.5 21 36-56 51-71 (324)
464 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0056 1.9E-07 46.9 3.8 23 33-55 24-46 (359)
465 4b4t_M 26S protease regulatory 96.0 0.0046 1.6E-07 48.8 3.5 24 33-56 215-238 (434)
466 1fnn_A CDC6P, cell division co 96.0 0.0043 1.5E-07 47.8 3.3 22 35-56 46-67 (389)
467 1sxj_C Activator 1 40 kDa subu 96.0 0.0041 1.4E-07 47.4 3.0 22 35-56 48-69 (340)
468 2px0_A Flagellar biosynthesis 96.0 0.004 1.4E-07 46.6 2.9 86 83-178 183-274 (296)
469 3crm_A TRNA delta(2)-isopenten 96.0 0.0045 1.5E-07 46.9 3.1 21 35-55 7-27 (323)
470 2dr3_A UPF0273 protein PH0284; 95.9 0.0044 1.5E-07 44.6 3.0 21 35-55 25-45 (247)
471 1vma_A Cell division protein F 95.9 0.0047 1.6E-07 46.5 3.1 87 83-180 187-286 (306)
472 4a82_A Cystic fibrosis transme 95.9 0.0022 7.6E-08 52.6 1.5 22 35-56 369-390 (578)
473 3j16_B RLI1P; ribosome recycli 95.9 0.0045 1.5E-07 51.0 3.2 22 36-57 381-402 (608)
474 3d3q_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 47.1 3.1 23 34-56 8-30 (340)
475 1pzn_A RAD51, DNA repair and r 95.9 0.0042 1.4E-07 47.7 2.9 22 35-56 133-154 (349)
476 2qgz_A Helicase loader, putati 95.9 0.0051 1.8E-07 46.3 3.2 24 33-56 152-175 (308)
477 3qks_A DNA double-strand break 95.9 0.0056 1.9E-07 43.2 3.2 20 36-55 26-45 (203)
478 3qf4_A ABC transporter, ATP-bi 95.9 0.0029 1E-07 52.0 1.9 22 35-56 371-392 (587)
479 4b4t_L 26S protease subunit RP 95.9 0.0057 1.9E-07 48.3 3.5 24 33-56 215-238 (437)
480 1c9k_A COBU, adenosylcobinamid 95.8 0.0056 1.9E-07 42.3 3.0 21 36-56 2-22 (180)
481 3a8t_A Adenylate isopentenyltr 95.8 0.0058 2E-07 46.5 3.3 23 34-56 41-63 (339)
482 3exa_A TRNA delta(2)-isopenten 95.8 0.0058 2E-07 46.0 3.2 22 35-56 5-26 (322)
483 2h92_A Cytidylate kinase; ross 95.8 0.0061 2.1E-07 43.2 3.1 22 34-55 4-25 (219)
484 3uk6_A RUVB-like 2; hexameric 95.8 0.0055 1.9E-07 47.0 3.1 22 35-56 72-93 (368)
485 4b4t_J 26S protease regulatory 95.8 0.006 2.1E-07 47.6 3.2 24 33-56 182-205 (405)
486 1sxj_D Activator 1 41 kDa subu 95.8 0.0056 1.9E-07 46.6 3.1 22 35-56 60-81 (353)
487 2r62_A Cell division protease 95.8 0.0023 7.8E-08 47.0 0.8 22 35-56 46-67 (268)
488 3foz_A TRNA delta(2)-isopenten 95.8 0.0082 2.8E-07 45.1 3.8 22 35-56 12-33 (316)
489 2qp9_X Vacuolar protein sortin 95.7 0.0058 2E-07 47.0 3.0 23 34-56 85-107 (355)
490 3hws_A ATP-dependent CLP prote 95.7 0.0061 2.1E-07 46.9 3.1 24 33-56 51-74 (363)
491 3pxg_A Negative regulator of g 95.7 0.0056 1.9E-07 48.9 3.0 23 34-56 202-224 (468)
492 1a7j_A Phosphoribulokinase; tr 95.7 0.0031 1.1E-07 47.1 1.4 23 33-55 5-27 (290)
493 2v1u_A Cell division control p 95.7 0.0049 1.7E-07 47.4 2.5 23 34-56 45-67 (387)
494 2dhr_A FTSH; AAA+ protein, hex 95.7 0.0059 2E-07 49.1 3.0 22 35-56 66-87 (499)
495 1um8_A ATP-dependent CLP prote 95.7 0.0063 2.1E-07 47.0 3.1 24 33-56 72-95 (376)
496 3tqf_A HPR(Ser) kinase; transf 95.7 0.0067 2.3E-07 41.6 2.8 23 34-56 17-39 (181)
497 3m6a_A ATP-dependent protease 95.7 0.0059 2E-07 49.7 3.0 22 35-56 110-131 (543)
498 3d8b_A Fidgetin-like protein 1 95.7 0.0069 2.4E-07 46.5 3.2 24 33-56 117-140 (357)
499 2bjv_A PSP operon transcriptio 95.7 0.0069 2.4E-07 44.3 3.1 23 34-56 30-52 (265)
500 3pfi_A Holliday junction ATP-d 95.7 0.0078 2.7E-07 45.7 3.5 23 34-56 56-78 (338)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.1e-39 Score=233.86 Aligned_cols=166 Identities=41% Similarity=0.738 Sum_probs=143.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+++||+|+|++|||||||+++|+.+.|...+.++.+.++..+.+.. ++..+.+.+|||+|++++..++..+++.++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45689999999999999999999999999989999998887777766 45559999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|||++++.+|+.+..|+..+......++|+++|+||+|+...++++.+++.++++.++++|+++||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877788999999999999888899999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|++.+..
T Consensus 170 i~~~i~~ 176 (216)
T 4dkx_A 170 VAAALPG 176 (216)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9988754
No 2
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=9.1e-35 Score=206.68 Aligned_cols=169 Identities=38% Similarity=0.661 Sum_probs=150.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 3467899999999999999999999999887777777777776666655 344589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.++++.++++++++||+++.|++++|
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998777777888899999999999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.+.
T Consensus 177 ~~l~~~i~~~ 186 (189)
T 2gf9_A 177 ERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 3
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=206.35 Aligned_cols=170 Identities=42% Similarity=0.711 Sum_probs=154.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 3467899999999999999999999999888888888888877777766 444588999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988877789999999999998888888889999999999999999999999999999
Q ss_pred HHHHHhhcccC
Q 028986 189 EVLITCTSSYC 199 (200)
Q Consensus 189 ~~i~~~~~~~~ 199 (200)
++|.+.+.++.
T Consensus 171 ~~l~~~i~~~~ 181 (196)
T 3tkl_A 171 MTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-34 Score=206.48 Aligned_cols=170 Identities=38% Similarity=0.746 Sum_probs=147.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 34467899999999999999999999999887777777777776666666 44558999999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876778999999999999777778888899999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.++
T Consensus 175 ~~~l~~~i~~~ 185 (191)
T 2a5j_A 175 FINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=210.16 Aligned_cols=170 Identities=39% Similarity=0.652 Sum_probs=142.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
+..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++++...+..+++.+
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 345778999999999999999999999988877777777777766666663 4458999999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQ 186 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~ 186 (200)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..+++ +++++||+++.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887667899999999999987677888899999999999 999999999999999
Q ss_pred HHHHHHHhhccc
Q 028986 187 LFEVLITCTSSY 198 (200)
Q Consensus 187 ~~~~i~~~~~~~ 198 (200)
+|++|.+.+.+.
T Consensus 183 l~~~l~~~i~~~ 194 (201)
T 2hup_A 183 AFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 6
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.1e-34 Score=202.28 Aligned_cols=168 Identities=55% Similarity=0.934 Sum_probs=149.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 4677999999999999999999999998877777777777776666664 445899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|+|++++.+++.+..|+..+......++|+++|+||+|+...+++..+++.+++..++++++++||+++.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987777888899999999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|.+.+.+.
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 999988654
No 7
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.3e-34 Score=202.18 Aligned_cols=167 Identities=43% Similarity=0.706 Sum_probs=142.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 56799999999999999999999998887777777777776666665 45558999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|+|++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887765668999999999999877778888899999999999999999999999999999
Q ss_pred HHHhhccc
Q 028986 191 LITCTSSY 198 (200)
Q Consensus 191 i~~~~~~~ 198 (200)
|.+.+.++
T Consensus 163 l~~~~~~~ 170 (170)
T 1z08_A 163 LCKRMIET 170 (170)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 99988653
No 8
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.6e-34 Score=203.26 Aligned_cols=168 Identities=38% Similarity=0.699 Sum_probs=149.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
...+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 3467899999999999999999999999887777777777776666666 444588999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988777789999999999997777778888999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|.+.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999998765
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=7.9e-35 Score=205.82 Aligned_cols=168 Identities=40% Similarity=0.720 Sum_probs=121.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 356899999999999999999999998877677777777776666666 4455899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987777888899999999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|.+.+.+.
T Consensus 164 ~l~~~i~~~ 172 (183)
T 2fu5_C 164 TLARDIKAK 172 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=207.54 Aligned_cols=168 Identities=41% Similarity=0.763 Sum_probs=150.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999999888777788888877777666 445589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..+++..++...+++++++||++|.|++++|
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988777789999999999998777788888899999999999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|.+.+.+
T Consensus 181 ~~l~~~i~~ 189 (201)
T 2ew1_A 181 LDLACRLIS 189 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 11
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.4e-34 Score=200.66 Aligned_cols=166 Identities=58% Similarity=0.930 Sum_probs=148.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 467899999999999999999999988877777777777766666664 4458999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|+|++++.+++.+..|+..+......++|+++|+||+|+...+....+++.+++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876778999999999999776677788889999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+.+
T Consensus 163 i~~~~~~ 169 (170)
T 1r2q_A 163 IAKKLPK 169 (170)
T ss_dssp HHHTSCC
T ss_pred HHHHHhh
Confidence 9998764
No 12
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=208.21 Aligned_cols=170 Identities=38% Similarity=0.685 Sum_probs=139.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
.+..++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence 334577899999999999999999999998887777777777776666666 4445899999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||+++.|+++
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999998887677899999999999977677788888999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 028986 187 LFEVLITCTSS 197 (200)
Q Consensus 187 ~~~~i~~~~~~ 197 (200)
+|++|.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (200)
T 2o52_A 178 AFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=206.12 Aligned_cols=171 Identities=42% Similarity=0.747 Sum_probs=150.7
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
.+..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 3445778999999999999999999999998877777777777766666663 445899999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999998877667899999999999987677788889999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 028986 187 LFEVLITCTSSY 198 (200)
Q Consensus 187 ~~~~i~~~~~~~ 198 (200)
+|++|.+.+.+.
T Consensus 178 l~~~l~~~i~~~ 189 (193)
T 2oil_A 178 AFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 14
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.2e-34 Score=199.00 Aligned_cols=166 Identities=51% Similarity=0.845 Sum_probs=149.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+. +....+.+||+||.+.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 467999999999999999999999998877777888877766666664 4448899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|+|++++.+++.+..|+..+........|+++|+||+|+...+++..++...++..++++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877788999999999999877778888899999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+.+
T Consensus 163 i~~~i~~ 169 (170)
T 1z0j_A 163 ISRRIPS 169 (170)
T ss_dssp HHHHCCC
T ss_pred HHHHHhc
Confidence 9988754
No 15
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-34 Score=205.06 Aligned_cols=169 Identities=52% Similarity=0.828 Sum_probs=149.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34678999999999999999999999998877777788887766666664 44589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.++++.++++++++||+++.|++++|
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999999999999988777789999999999997767778889999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.+.
T Consensus 178 ~~l~~~i~~~ 187 (192)
T 2fg5_A 178 QGISRQIPPL 187 (192)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 16
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8.9e-34 Score=204.15 Aligned_cols=168 Identities=39% Similarity=0.700 Sum_probs=151.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 467899999999999999999999999888777788888777666666 4455899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887677899999999999988777888888999999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|.+.+.+.
T Consensus 164 ~l~~~i~~~ 172 (206)
T 2bcg_Y 164 TMARQIKES 172 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 17
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-35 Score=209.79 Aligned_cols=170 Identities=38% Similarity=0.639 Sum_probs=153.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...... +.+.+||+||++.+...+..+++.+|
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR-VKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTT-EEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEE-EEEEEEeCCChHHHHHHHHHHHccCC
Confidence 34678999999999999999999999988877777778777777777664444 88999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++++|||++++.+++.+..|+..+......++|+++|+||+|+...+....++...++..++++++++||+++.|++++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988777789999999999998777888899999999999999999999999999999
Q ss_pred HHHHHhhcccC
Q 028986 189 EVLITCTSSYC 199 (200)
Q Consensus 189 ~~i~~~~~~~~ 199 (200)
++|++.+.+..
T Consensus 178 ~~l~~~i~~~~ 188 (191)
T 3dz8_A 178 ERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-34 Score=199.58 Aligned_cols=169 Identities=37% Similarity=0.662 Sum_probs=140.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
..+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGC
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 3467899999999999999999999998874 345666777766555555 45558999999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988876678999999999999887778888889999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.++
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.5e-34 Score=201.93 Aligned_cols=169 Identities=30% Similarity=0.461 Sum_probs=147.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
....+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...... ++..+.+.+||+||++.+...+..+++.+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 3456789999999999999999999999888777777777666 444444 45557899999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC-CCCCHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK-TADNIN 185 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i~ 185 (200)
|++++|||++++.+++.+..|+..+.. ....++|+++|+||+|+...+.+..+++.+++..++++++++||+ ++.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 999999999999999999999988865 345688999999999998888889999999999999999999999 999999
Q ss_pred HHHHHHHHhhccc
Q 028986 186 QLFEVLITCTSSY 198 (200)
Q Consensus 186 ~~~~~i~~~~~~~ 198 (200)
++|++|.+.+.++
T Consensus 171 ~l~~~l~~~i~~q 183 (183)
T 3kkq_A 171 KTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988753
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-34 Score=199.44 Aligned_cols=165 Identities=53% Similarity=0.865 Sum_probs=147.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 4689999999999999999999999887777778887776666666 445589999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC---CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+... +++..++..+++..++++++++||+++.|++++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988876778999999999999655 6677888889999999999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|.+.+.+
T Consensus 161 ~~l~~~i~~ 169 (170)
T 1ek0_A 161 LGIGEKIPL 169 (170)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHHhh
Confidence 999988764
No 21
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=4.6e-34 Score=202.28 Aligned_cols=167 Identities=38% Similarity=0.676 Sum_probs=149.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.++.++|+|+|++|||||||+++|++..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 467899999999999999999999999887777777777776666665 4455789999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999998887677899999999999977677788888999999999999999999999999999
Q ss_pred HHHHhhcc
Q 028986 190 VLITCTSS 197 (200)
Q Consensus 190 ~i~~~~~~ 197 (200)
+|.+.+.+
T Consensus 166 ~l~~~~~~ 173 (186)
T 2bme_A 166 QCARKILN 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 22
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.1e-34 Score=210.58 Aligned_cols=170 Identities=35% Similarity=0.616 Sum_probs=146.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC---------cEEEEEEEeCCChhhhhhc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS---------TTVKFEIWDTAGQERYAAL 99 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~D~~g~~~~~~~ 99 (200)
..++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+. ..+.+.+||+||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 4567899999999999999999999998887666677776666666655433 1478999999999999999
Q ss_pred ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
+..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999999887765543 68999999999999877777888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhccc
Q 028986 179 KTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 179 ~~~~~i~~~~~~i~~~~~~~ 198 (200)
+++.|++++|++|.+.+.++
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 23
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=203.41 Aligned_cols=168 Identities=36% Similarity=0.631 Sum_probs=149.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 3457899999999999999999999999887777777777776666655 444589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998877788889999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
++|.+.+.+
T Consensus 163 ~~l~~~i~~ 171 (203)
T 1zbd_A 163 ERLVDVICE 171 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=6.7e-34 Score=198.45 Aligned_cols=165 Identities=42% Similarity=0.763 Sum_probs=141.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999999887777777777776666665 445589999999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....++..++++.++++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999998877778999999999999 445567788889999999999999999999999999999
Q ss_pred HHhhccc
Q 028986 192 ITCTSSY 198 (200)
Q Consensus 192 ~~~~~~~ 198 (200)
.+.+.++
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988764
No 25
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.8e-34 Score=199.77 Aligned_cols=168 Identities=37% Similarity=0.670 Sum_probs=147.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 3467899999999999999999999998887777778887777777666 445588999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999999998776 4589999999999998877788888999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.+.
T Consensus 163 ~~l~~~~~~~ 172 (181)
T 3tw8_B 163 NCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=205.17 Aligned_cols=171 Identities=35% Similarity=0.644 Sum_probs=143.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
..+....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 344577899999999999999999999998887777777777777776666 4445889999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNIN 185 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~ 185 (200)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..+++.+++... +++++++||+++.|++
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 999999999999999999999999998877778999999999999877777888888888874 8899999999999999
Q ss_pred HHHHHHHHhhccc
Q 028986 186 QLFEVLITCTSSY 198 (200)
Q Consensus 186 ~~~~~i~~~~~~~ 198 (200)
++|++|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.8e-33 Score=200.25 Aligned_cols=171 Identities=32% Similarity=0.597 Sum_probs=148.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEE-EEEEEecCC--------cEEEEEEEeCCChhhhhh
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL-SQTIALQDS--------TTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~l~D~~g~~~~~~ 98 (200)
...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+...+. ..+.+.+||+||++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 34577899999999999999999999998887777777777776 444444332 158999999999999999
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEec
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 177 (200)
.+..+++.+|++|+|+|++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++|
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999999999999999998877654 6899999999999987777788889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccc
Q 028986 178 AKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++++.|++++|++|.+.+.++
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.1e-34 Score=202.61 Aligned_cols=168 Identities=30% Similarity=0.476 Sum_probs=146.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 46799999999999999999999998876666677777777777777665668999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
++|||++++.+++.+..|+..+.... ....|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999999998887642 133448999999999776777888889999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (178)
T 2hxs_A 164 FQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999988664
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.4e-33 Score=198.99 Aligned_cols=166 Identities=30% Similarity=0.443 Sum_probs=145.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 4688999999999999999999998888777777777766 444444 55568899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998886543 45799999999999988888899999999999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|++.+.++
T Consensus 162 ~l~~~~~~~ 170 (181)
T 3t5g_A 162 RIILEAEKM 170 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999988765
No 30
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=205.89 Aligned_cols=168 Identities=40% Similarity=0.760 Sum_probs=142.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 467799999999999999999999999888777778887777666666 4455899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+++..+++..++..++++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987777788888999999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|.+.+.+.
T Consensus 169 ~l~~~i~~~ 177 (223)
T 3cpj_B 169 ELINTIYQK 177 (223)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 999988764
No 31
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=205.23 Aligned_cols=169 Identities=33% Similarity=0.559 Sum_probs=136.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 3456799999999999999999999998887777777777776666666 444588999999999999889999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC------CCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH------EKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+. ..+.+..+++.+++..++++++++||+++.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999999888766789999999999985 446677888899999999999999999999
Q ss_pred CHHHHHHHHHHhhccc
Q 028986 183 NINQLFEVLITCTSSY 198 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~ 198 (200)
|++++|++|++.+.++
T Consensus 183 gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 183 NIVEAVLHLAREVKKR 198 (199)
T ss_dssp THHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.3e-33 Score=200.78 Aligned_cols=169 Identities=36% Similarity=0.672 Sum_probs=143.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccC
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRG 106 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~ 106 (200)
....+.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++++. ..+..+++.
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 34467899999999999999999999998887777777777776666666 4445889999999999888 888889999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC---C
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA---D 182 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~ 182 (200)
+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++..+++..++++++++|++++ .
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 999999999999999999999999887764 567999999999999777778888899999999999999999999 9
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
+++++|++|++.+.+
T Consensus 174 ~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 174 HVEAIFMTLAHKLKS 188 (189)
T ss_dssp CHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987754
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.1e-34 Score=197.41 Aligned_cols=165 Identities=32% Similarity=0.576 Sum_probs=146.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 46789999999999999999999999887777888777777766666 44458999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+++..+++.+++..++++++++|++++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999887664 67899999999999877777788889999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 34
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.5e-33 Score=198.29 Aligned_cols=167 Identities=42% Similarity=0.754 Sum_probs=147.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45699999999999999999999998887777777777776766666 44457899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|+|++++.+++.+..|+..+......++|+++|+||+|+...+++..++...++...+++++++|++++.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888766678999999999999877777888889999999999999999999999999999
Q ss_pred HHHhhccc
Q 028986 191 LITCTSSY 198 (200)
Q Consensus 191 i~~~~~~~ 198 (200)
|.+.+.+.
T Consensus 171 l~~~~~~~ 178 (179)
T 2y8e_A 171 VAAALPGM 178 (179)
T ss_dssp HHHTCC--
T ss_pred HHHHHhhc
Confidence 99987653
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=202.73 Aligned_cols=171 Identities=27% Similarity=0.317 Sum_probs=138.6
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-ccccccc
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYR 105 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~ 105 (200)
+.+....++|+|+|++|||||||+++|.+........++.+.+.....+.+ ++..+.+.+||++|++.+.. ++..+++
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 344567899999999999999999999764333223334444444555555 45568999999999987654 6777889
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|+
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 99999999999999999999999998877543 57999999999999877778888999999999999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
+++|++|++.+.++
T Consensus 176 ~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 176 RELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988664
No 36
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=216.01 Aligned_cols=171 Identities=42% Similarity=0.705 Sum_probs=141.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
...+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 34567899999999999999999999998877776777777777776666 44458899999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998877778999999999999877777777788899999999999999999999999
Q ss_pred HHHHHHhhcccC
Q 028986 188 FEVLITCTSSYC 199 (200)
Q Consensus 188 ~~~i~~~~~~~~ 199 (200)
|++|.+.+.+++
T Consensus 187 ~~~l~~~l~~~~ 198 (199)
T 3l0i_B 187 FMTMAAEIKKRM 198 (199)
T ss_dssp HHHHTTTTTTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 37
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=203.13 Aligned_cols=169 Identities=31% Similarity=0.446 Sum_probs=142.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
.+....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 3446789999999999999999999999988877777776665 333333 34448899999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
|++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||+++.|+++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG 176 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999887653 45789999999999988888888999999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 028986 187 LFEVLITCTSSY 198 (200)
Q Consensus 187 ~~~~i~~~~~~~ 198 (200)
+|++|.+.+.+.
T Consensus 177 l~~~l~~~i~~~ 188 (201)
T 3oes_A 177 IFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.1e-33 Score=195.88 Aligned_cols=166 Identities=28% Similarity=0.327 Sum_probs=130.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAVAV 111 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i 111 (200)
.+||+|+|++|||||||+++|.+..+.....++.+.+.....+.+ ++..+.+.+||++|++.+.. .+..+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 579999999999999999999987766555555556665666665 45558999999999988775 6777888999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 99999999999999999998877643 48999999999999877888899999999999999999999999999999999
Q ss_pred HHHhhcccC
Q 028986 191 LITCTSSYC 199 (200)
Q Consensus 191 i~~~~~~~~ 199 (200)
|.+.+..++
T Consensus 161 l~~~i~~~r 169 (169)
T 3q85_A 161 AVRQIRLRR 169 (169)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999987653
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.3e-33 Score=194.27 Aligned_cols=167 Identities=32% Similarity=0.604 Sum_probs=142.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 467899999999999999999999998887777777887776666666 4455899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCCCCH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTADNI 184 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i 184 (200)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+. .++...+++.+++. ..+++++++||+++.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 678999999999997 45667788888888 56789999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
+++|++|++.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 40
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=8.3e-33 Score=197.32 Aligned_cols=168 Identities=30% Similarity=0.543 Sum_probs=145.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 45678999999999999999999999998877777777766643 3344 455588999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC--CcCCHHHHHHHHHHcCCe-EEEecCCCCCCH
Q 028986 109 VAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK--REVPAQDGIEYAEKNGMF-FIETSAKTADNI 184 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i 184 (200)
++++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+... +.+..+++.+++..+++. ++++||+++.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999987 7888888766 567999999999999753 667888999999999998 999999999999
Q ss_pred HHHHHHHHHhhcccC
Q 028986 185 NQLFEVLITCTSSYC 199 (200)
Q Consensus 185 ~~~~~~i~~~~~~~~ 199 (200)
+++|++|.+.+.+..
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 176 NEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887653
No 41
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3e-33 Score=202.69 Aligned_cols=169 Identities=24% Similarity=0.468 Sum_probs=142.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
+......+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+ ++..+.+.+||++|++.+...+..+++.
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC---CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 345567899999999999999999999999888777777776663 33444 4455899999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHH-HHHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-e
Q 028986 107 AAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-F 172 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~ 172 (200)
+|++|+|||++++.+++. +..|+..+... ..++|+++|+||+|+... +.+..+++.+++..+++ +
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 999999999999999998 69999999877 468999999999999653 66888999999999999 9
Q ss_pred EEEecCCCCCC-HHHHHHHHHHhhccc
Q 028986 173 FIETSAKTADN-INQLFEVLITCTSSY 198 (200)
Q Consensus 173 ~~~~S~~~~~~-i~~~~~~i~~~~~~~ 198 (200)
+++|||+++.| ++++|++|++.+.+.
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 99999999998 999999999987654
No 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.8e-33 Score=197.38 Aligned_cols=169 Identities=34% Similarity=0.617 Sum_probs=133.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+.++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45679999999999999999999999988777777777777777777664556899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCC-CcCCHHHHHHHHH-HcCCeEEEecCCCCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEK-REVPAQDGIEYAE-KNGMFFIETSAKTADN 183 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~ 183 (200)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+... +.+..+++.+++. ..+++++++|++++.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876533 67899999999999543 4566788888887 4678999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028986 184 INQLFEVLITCTSSY 198 (200)
Q Consensus 184 i~~~~~~i~~~~~~~ 198 (200)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=197.70 Aligned_cols=168 Identities=44% Similarity=0.753 Sum_probs=146.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3456799999999999999999999999888777788887777666666 444589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
++|+|+|++++.+++.+..|+..+.... ..++|+++|+||+|+. .+.+..+++.+++..++++++++||+++.|++++
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999999999887654 3579999999999994 4456778889999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.+.
T Consensus 169 ~~~l~~~~~~~ 179 (195)
T 1x3s_A 169 FEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 44
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.4e-33 Score=200.16 Aligned_cols=185 Identities=28% Similarity=0.329 Sum_probs=135.1
Q ss_pred CCCCCCCCCccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCC--CCCCccccceeEEEEEEEecCCcEEEEEEE
Q 028986 11 SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DPTSKVTVGASFLSQTIALQDSTTVKFEIW 88 (200)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (200)
+.+.+-.+........+......+||+|+|++|||||||+++|++... ...+ ++.+.++....+.+ ++..+.+.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~-~~~~~~l~~~ 92 (211)
T 2g3y_A 15 TENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMV-DGESATIILL 92 (211)
T ss_dssp --------------------CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEE-TTEEEEEEEE
T ss_pred cCCccccccccCCCcccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEE-CCeeeEEEEe
Confidence 333444444444444445566789999999999999999999997433 2322 33555555555555 5556889999
Q ss_pred eCCChhh-hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHH
Q 028986 89 DTAGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYA 166 (200)
Q Consensus 89 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 166 (200)
||+|.+. +..+...+++.+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++
T Consensus 93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a 172 (211)
T 2g3y_A 93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 172 (211)
T ss_dssp CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH
Confidence 9999876 45566778899999999999999999999999988876542 457999999999999776777788888888
Q ss_pred HHcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 167 EKNGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 167 ~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
..++++++++||++|.|++++|++|.+.+..
T Consensus 173 ~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 173 VVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp HHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998754
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4.2e-33 Score=196.28 Aligned_cols=168 Identities=30% Similarity=0.521 Sum_probs=145.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
+....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++++...+..+++.+|
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 3456789999999999999999999999887777777776654 44444 445578999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHH-HcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQ-KHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
++++|||++++.+++.+..|+..+. .....++|+++|+||+|+...+++..++...++...+++++++||+++.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999999998874 444668999999999999877778888889999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.+.
T Consensus 163 ~~~l~~~~~~~ 173 (181)
T 2fn4_A 163 FEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.4e-32 Score=197.31 Aligned_cols=166 Identities=43% Similarity=0.745 Sum_probs=144.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc-----------------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST----------------------------- 81 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 81 (200)
+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+.+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999998877777777777766666554321
Q ss_pred -------EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 82 -------TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 82 -------~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
.+.+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 17899999999999999999999999999999999999999999999998877643 89999999999 555
Q ss_pred CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
+....+++.+++..++++++++||+++.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 677788999999999999999999999999999999999887653
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=199.54 Aligned_cols=165 Identities=25% Similarity=0.429 Sum_probs=139.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+ ++..+.+.+||++|++.+... ..+++.+|+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 366799999999999999999999999887777777776653 33444 455689999999999887764 668899999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC-CCCCCHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA-KTADNIN 185 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~i~ 185 (200)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++..++++++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999887653 258899999999999877778889999999999999999999 8999999
Q ss_pred HHHHHHHHhhcc
Q 028986 186 QLFEVLITCTSS 197 (200)
Q Consensus 186 ~~~~~i~~~~~~ 197 (200)
++|++|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 48
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.2e-33 Score=200.20 Aligned_cols=168 Identities=40% Similarity=0.747 Sum_probs=145.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 4466799999999999999999999998887777777777776666666 444578999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++++|||++++.+++.+..|+..+......++|+++|+||+|+ ..+....++...++..++++++++||+++.|++++|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988876678999999999999 445667788888999899999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.+.
T Consensus 174 ~~l~~~~~~~ 183 (213)
T 3cph_A 174 FTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 49
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.4e-32 Score=194.71 Aligned_cols=163 Identities=18% Similarity=0.310 Sum_probs=137.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
......+||+|+|++|||||||+++|++..+...+.++ ...+ ...+.+ ++..+.+.+|||+|++.+. +++.+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCC
Confidence 34577899999999999999999999999887766665 3333 345555 4556899999999998766 77889
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHHcC-CeEEEecCCCCCC
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLH--EKREVPAQDGIEYAEKNG-MFFIETSAKTADN 183 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 183 (200)
|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++.+++..++ ++++++||+++.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999987643 578999999999993 456788889999999986 8999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028986 184 INQLFEVLITCTSSY 198 (200)
Q Consensus 184 i~~~~~~i~~~~~~~ 198 (200)
++++|++|++.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 50
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.1e-33 Score=205.35 Aligned_cols=170 Identities=32% Similarity=0.502 Sum_probs=147.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+|+|++|||||||+++|++..+...+.++.+...........++..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 44678999999999999999999999988777777777777777766666666689999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..++...++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999988767779999999999998877788888889988899999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.++
T Consensus 167 ~~l~~~~~~~ 176 (218)
T 4djt_A 167 LHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhcc
Confidence 9999988765
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=6.2e-33 Score=192.98 Aligned_cols=165 Identities=32% Similarity=0.517 Sum_probs=140.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 4689999999999999999999998877666666665553 33344 445588999999999998899999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...++...+++.+++..++++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999998887654 357999999999999877778888999999999999999999999999999999
Q ss_pred HHHhhccc
Q 028986 191 LITCTSSY 198 (200)
Q Consensus 191 i~~~~~~~ 198 (200)
|.+.+.++
T Consensus 161 l~~~i~~~ 168 (168)
T 1u8z_A 161 LMREIRAR 168 (168)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988653
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=193.02 Aligned_cols=166 Identities=30% Similarity=0.386 Sum_probs=131.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--hhhcccccccCcc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--YAALAPLYYRGAA 108 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d 108 (200)
++.++|+|+|++|||||||+++|.+..+...+. +.+.+.....+.+ ++..+.+.+||+||++. +......+++.+|
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS 79 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence 357899999999999999999999987655433 4555555555555 45558899999999877 5566677889999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..++...++..++++++++||++|.|++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 9999999999999999999998887653 457899999999999887778888888899899999999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.++
T Consensus 160 ~~~l~~~~~~~ 170 (175)
T 2nzj_A 160 FEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1e-32 Score=191.84 Aligned_cols=163 Identities=30% Similarity=0.393 Sum_probs=120.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.+||+++|++|||||||+++|.+...... .++.+..+ ...+.+ ++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEE-TTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 57999999999999999999997665432 33344444 334444 4556899999999999999999999999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999998887653 5679999999999998888888999999999999999999999999999999999
Q ss_pred HHhhccc
Q 028986 192 ITCTSSY 198 (200)
Q Consensus 192 ~~~~~~~ 198 (200)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998765
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=6.9e-33 Score=196.15 Aligned_cols=166 Identities=32% Similarity=0.514 Sum_probs=143.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 4679999999999999999999999887776666666555 333344 44557899999999998888999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..+++.+++..++++++++|++++.|++++|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 99999999999999999998887654 35799999999999987777788899999999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|.+.+.++
T Consensus 174 ~l~~~i~~~ 182 (187)
T 2a9k_A 174 DLMREIRAR 182 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988653
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.1e-32 Score=191.78 Aligned_cols=163 Identities=34% Similarity=0.547 Sum_probs=140.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.++|+++|++|||||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4689999999999999999999998887777776665553 33444 455689999999999988888999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..+ +++++++||++|.|++++|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999998898887664 3568999999999999877777888889999887 78999999999999999999
Q ss_pred HHHHhhc
Q 028986 190 VLITCTS 196 (200)
Q Consensus 190 ~i~~~~~ 196 (200)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998875
No 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=197.40 Aligned_cols=167 Identities=32% Similarity=0.514 Sum_probs=144.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 445679999999999999999999999887777777666555 334444 445578999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 187 (200)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..+++..++..++++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999887764 357999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 028986 188 FEVLITCTSS 197 (200)
Q Consensus 188 ~~~i~~~~~~ 197 (200)
|++|++.+.+
T Consensus 168 ~~~l~~~i~~ 177 (206)
T 2bov_A 168 FFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 57
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-32 Score=193.81 Aligned_cols=165 Identities=27% Similarity=0.550 Sum_probs=141.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
+....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++++...+..+++++|
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 446789999999999999999999999888777777776655 333444 455589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEE
Q 028986 109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFI 174 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 174 (200)
++++|||++++.+++.+. .|+..+... ..++|+++|+||+|+... +.+..+++.+++..+++ +++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999886 798888876 347899999999999754 45778888999999888 899
Q ss_pred EecCCCCCCHHHHHHHHHHhhc
Q 028986 175 ETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
++||+++.|++++|++|.+.+.
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 58
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=6.3e-32 Score=193.88 Aligned_cols=166 Identities=33% Similarity=0.640 Sum_probs=141.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 34578999999999999999999999988877777776666543 3444 455589999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEE
Q 028986 109 VAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFI 174 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 174 (200)
++++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+... +.+..++..+++...++ +++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 99999999999999988 7888888775 357899999999999765 45677888899998888 899
Q ss_pred EecCCCCCCHHHHHHHHHHhhcc
Q 028986 175 ETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++||+++.|++++|++|.+.+.+
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999988754
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.8e-32 Score=196.29 Aligned_cols=166 Identities=36% Similarity=0.679 Sum_probs=142.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 4568999999999999999999999998887777777777766666664 445899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCCCCH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTADNI 184 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i 184 (200)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988766532 478999999999997 44566778888887 66889999999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
+++|++|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=5.9e-32 Score=192.16 Aligned_cols=172 Identities=32% Similarity=0.505 Sum_probs=131.3
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccc
Q 028986 24 AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLY 103 (200)
Q Consensus 24 ~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 103 (200)
+....+....++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+
T Consensus 12 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~ 89 (190)
T 3con_A 12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQY 89 (190)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC-----------
T ss_pred ccccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEE-CCEEEEEEEEECCChHHHHHHHHHh
Confidence 33444556789999999999999999999999887666666555444 333444 4455889999999999999999999
Q ss_pred ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
++.+|++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.. +....+++.++++.++++++++|++++.
T Consensus 90 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 90 MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQ 168 (190)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999999999998887653 35789999999999876 4567888899999999999999999999
Q ss_pred CHHHHHHHHHHhhccc
Q 028986 183 NINQLFEVLITCTSSY 198 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~ 198 (200)
|++++|++|.+.+.++
T Consensus 169 gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 169 GVEDAFYTLVREIRQY 184 (190)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.9e-33 Score=200.22 Aligned_cols=167 Identities=26% Similarity=0.462 Sum_probs=109.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCCCccccceeEEEEEEEecCCc-EEEEEEEeCCChhhhhhcccccccCc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQDST-TVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+.+.. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999998 6666666666666656666664431 58999999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCC---CCCeEEEEEeCCCCCC-CCcCCHHHHHHHHHHcCCeEEEecCCC-CC
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS---PDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKT-AD 182 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~ 182 (200)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+..+++.+++..++++++++|+++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 6899999999999987 677888899999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
|++++|++|.+.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=8.9e-33 Score=192.01 Aligned_cols=164 Identities=32% Similarity=0.527 Sum_probs=141.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 468999999999999999999999887776666665444 444444 445578999999999988888899999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++..+++..++++++++||+++.|++++|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 9999999999999999988876653 467999999999999777778888889999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3e-32 Score=192.89 Aligned_cols=165 Identities=27% Similarity=0.563 Sum_probs=139.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 356799999999999999999999998887777777766553 34444 4455899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEE
Q 028986 110 AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIE 175 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 175 (200)
+++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+... +.+..+++.++++.++ +++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999988 7898888776 357999999999999642 4577888899998887 68999
Q ss_pred ecCC-CCCCHHHHHHHHHHhhcc
Q 028986 176 TSAK-TADNINQLFEVLITCTSS 197 (200)
Q Consensus 176 ~S~~-~~~~i~~~~~~i~~~~~~ 197 (200)
+||+ ++.|++++|++|.+.+.+
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999988754
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-32 Score=195.64 Aligned_cols=165 Identities=27% Similarity=0.569 Sum_probs=139.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 45689999999999999999999999988777777776665 333444 4555899999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEE
Q 028986 110 AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIE 175 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 175 (200)
+|+|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+... +.+..+++.++++.++ +++++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999988 7898888776 357999999999999642 4577888899998887 68999
Q ss_pred ecCC-CCCCHHHHHHHHHHhhcc
Q 028986 176 TSAK-TADNINQLFEVLITCTSS 197 (200)
Q Consensus 176 ~S~~-~~~~i~~~~~~i~~~~~~ 197 (200)
+||+ ++.|++++|++|++.+.+
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999988754
No 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-32 Score=195.75 Aligned_cols=166 Identities=34% Similarity=0.454 Sum_probs=141.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+ ++..+.+.+||+||++. ...+..+++.+|+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 35679999999999999999999999988777777776555 333444 45558899999999887 6777888999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQL 187 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~ 187 (200)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..+++.+++..++++++++||+++. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 999999999999999999998887643 4689999999999998777788889999999999999999999999 99999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|++.+.+.
T Consensus 182 ~~~l~~~i~~~ 192 (196)
T 2atv_A 182 FYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=5.2e-32 Score=190.51 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=131.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.+||+++|++|||||||+++|.+..+.. +.++.+..+ ...+.+ ++..+.+.+||++|+++ ..+++++|++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 467999999999999999999999988876 556666444 444555 45558899999999875 4567889999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLH--EKREVPAQDGIEYAEKN-GMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i 184 (200)
|+|||++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+..+++.+++... +++++++||++|.|+
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999999876665543 23689999999999993 45667888888888876 689999999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
+++|++|.+.+.+
T Consensus 157 ~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 157 DRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-32 Score=190.86 Aligned_cols=165 Identities=31% Similarity=0.457 Sum_probs=139.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..... ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 4689999999999999999999998876666666655543 22333 455578999999999988888888999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+|+|++++.+++.+..|+..+.+.. ..+.|+++|+||+|+...+++..++...++..++++++++|++++.|++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 9999999999999888888876643 25789999999999987777778888889999999999999999999999999
Q ss_pred HHHHhhccc
Q 028986 190 VLITCTSSY 198 (200)
Q Consensus 190 ~i~~~~~~~ 198 (200)
+|.+.+.++
T Consensus 160 ~l~~~~~~~ 168 (172)
T 2erx_A 160 ELLNLEKRR 168 (172)
T ss_dssp HHHHTCCSS
T ss_pred HHHHHHhhh
Confidence 999988764
No 68
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.9e-32 Score=195.43 Aligned_cols=164 Identities=30% Similarity=0.596 Sum_probs=135.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
...+.+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 346789999999999999999999999887766666665433 333444 455688999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCc------------CCHHHHHHHHHHcCC-eEE
Q 028986 109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNGM-FFI 174 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~ 174 (200)
++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+..... +..++...++...++ +++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 999999999999999886 8888888774 6899999999999966532 677888889998886 599
Q ss_pred EecCCCCCCHHHHHHHHHHhh
Q 028986 175 ETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~ 195 (200)
++||++|.|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998865
No 69
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=6.7e-32 Score=193.57 Aligned_cols=167 Identities=32% Similarity=0.569 Sum_probs=133.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+++++|
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 456789999999999999999999999887766666666554 333444 455588999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEE
Q 028986 109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFI 174 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~ 174 (200)
++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. .+.+..+++..++..+++ +++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999986 7998888763 4899999999999965 355677888999988887 899
Q ss_pred EecCCCCCCHHHHHHHHHHhhccc
Q 028986 175 ETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++||+++.|++++|++|++.+.+.
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999887653
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.5e-31 Score=189.68 Aligned_cols=164 Identities=32% Similarity=0.539 Sum_probs=138.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|||||||+++|.+..+...+.++....+ ...+.. ++..+.+.+||+||++.+...+..++..+|++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 4578999999999999999999999887766666664433 333444 45558899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...++..++++++++||++|.|++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887743 56899999999999864 45677888999999999999999999999999999
Q ss_pred HHHHhhcc
Q 028986 190 VLITCTSS 197 (200)
Q Consensus 190 ~i~~~~~~ 197 (200)
+|.+.+.+
T Consensus 159 ~l~~~~~~ 166 (189)
T 4dsu_A 159 TLVREIRK 166 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=7e-32 Score=195.49 Aligned_cols=166 Identities=33% Similarity=0.591 Sum_probs=121.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|||||||+++|++..+...+.++....+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 108 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE-TTEEEEEEEEEC---------------CEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence 34679999999999999999999999887666666665444 333444 4555889999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHcCC-eEEE
Q 028986 110 AVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FFIE 175 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~ 175 (200)
+++|||++++.+++.+. .|+..+... ..++|+++|+||+|+.... .+..+++.+++..+++ ++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 99999999999999885 798888776 3578999999999997642 5677888899999987 8999
Q ss_pred ecCCCCCCHHHHHHHHHHhhccc
Q 028986 176 TSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+||++|.|++++|++|.+.+.+.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988654
No 72
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.9e-31 Score=188.68 Aligned_cols=165 Identities=30% Similarity=0.585 Sum_probs=140.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 4578999999999999999999999887766666665554 333444 45568899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..++...++..+++ +++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999886 7888887763 38999999999998653 45677888889998887 99999
Q ss_pred cCCCCCCHHHHHHHHHHhhccc
Q 028986 177 SAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
||++|.|++++|++|.+.+.+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCC
T ss_pred cCCCccCHHHHHHHHHHHHhcc
Confidence 9999999999999999988653
No 73
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=6.4e-32 Score=195.25 Aligned_cols=165 Identities=33% Similarity=0.630 Sum_probs=139.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++++|++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 4679999999999999999999999888777777776555 333444 45568999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--------CCHHHHHHHHHHcCC-eEEEecCCC
Q 028986 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE--------VPAQDGIEYAEKNGM-FFIETSAKT 180 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~ 180 (200)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+..... +..+++.+++..+++ +++++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999886 8999888763 4899999999999866543 367888889988886 899999999
Q ss_pred CCCHHHHHHHHHHhhccc
Q 028986 181 ADNINQLFEVLITCTSSY 198 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~~ 198 (200)
+.|++++|++|++.+.+.
T Consensus 164 g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999987653
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-31 Score=191.37 Aligned_cols=164 Identities=33% Similarity=0.618 Sum_probs=135.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...+||+|+|++|||||||+++|.+..+...+.++.+..+.. .+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 467899999999999999999999988877666666665533 3444 45558999999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+... +.+..++...++...++ +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999888 7888888775 357899999999999654 45677788889988888 89999
Q ss_pred cCCCCCCHHHHHHHHHHhhcc
Q 028986 177 SAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~~~ 197 (200)
||+++.|++++|++|.+.+.+
T Consensus 180 SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4.8e-31 Score=182.93 Aligned_cols=162 Identities=32% Similarity=0.547 Sum_probs=138.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 112 (200)
.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..++..+|++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 57999999999999999999999887766666655444 333444 4455889999999999888888889999999999
Q ss_pred EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191 (200)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i 191 (200)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +....++..+++..++++++++|++++.|+++++++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887654 34799999999999876 4566788889999999999999999999999999999
Q ss_pred HHhhcc
Q 028986 192 ITCTSS 197 (200)
Q Consensus 192 ~~~~~~ 197 (200)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998765
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.7e-31 Score=189.97 Aligned_cols=165 Identities=32% Similarity=0.471 Sum_probs=139.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45789999999999999999999998877666666665443 23333 45568999999999998888888999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 188 (200)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 99999999999998888887776643 24789999999999965 4566788888999999999999999999999999
Q ss_pred HHHHHhhccc
Q 028986 189 EVLITCTSSY 198 (200)
Q Consensus 189 ~~i~~~~~~~ 198 (200)
++|.+.+.++
T Consensus 163 ~~l~~~~~~~ 172 (199)
T 2gf0_A 163 QELLTLETRR 172 (199)
T ss_dssp HHHHHHCSSS
T ss_pred HHHHHHHhhh
Confidence 9999988654
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=3.3e-32 Score=194.29 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=133.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----------CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 97 (200)
...+..+||+|+|++|||||||++.+.+...... ..++.+.++....+...++..+.+.+|||||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3457789999999999999999987776432211 123333333333331234556899999999999999
Q ss_pred hcccccccCccEEEEEEeCC------CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Q 028986 98 ALAPLYYRGAAVAVVVYDIT------SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM 171 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 171 (200)
..+..+++++|++|+|||++ +..+++.+..|+..+. ....++|+++|+||+|+... ...+++.+++..+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 5567777778877773 23578999999999998664 678888999999999
Q ss_pred -eEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 172 -FFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 172 -~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+++++||+++.|++++|++|.+.+.++
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988654
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=3.9e-32 Score=191.66 Aligned_cols=163 Identities=32% Similarity=0.620 Sum_probs=125.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 45789999999999999999999998876666665554332 11222 33447888999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCc----------CCHHHHHHHHHHcCC-eEEEecC
Q 028986 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSA 178 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~ 178 (200)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+. +..+++.+++..+++ +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999886 7988888763 4899999999999866543 467788889988886 8999999
Q ss_pred CCCCCHHHHHHHHHHhhc
Q 028986 179 KTADNINQLFEVLITCTS 196 (200)
Q Consensus 179 ~~~~~i~~~~~~i~~~~~ 196 (200)
+++.|++++|++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=1.5e-31 Score=191.21 Aligned_cols=165 Identities=18% Similarity=0.270 Sum_probs=127.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 105 (200)
..+.....+|+|+|++|||||||+++|++..+.. .+.++.+.... .+. ...+.+.+|||||++.+...+..+++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE---KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE---ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE---eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 4456788899999999999999999999998877 66666664332 232 22378999999999999999999999
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--------CCCeEEEEEeCCCCCCCCcCCHHHHHHH------HHHcCC
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--------PDIVMALVGNKADLHEKREVPAQDGIEY------AEKNGM 171 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~~~ 171 (200)
.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+..... .++..+. +...++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCee
Confidence 99999999999999999999888887765411 3789999999999976532 2222211 134677
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 172 FFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 172 ~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+++++||+++.|++++|++|.+.+.++
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999988654
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=8.4e-32 Score=191.27 Aligned_cols=164 Identities=25% Similarity=0.351 Sum_probs=129.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
..+..++|+|+|++|+|||||+++|++..+...+.++.+..+.. +.. ..+.+.+||+||++++...+..+++.+|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK---GNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE---TTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe---CCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 34668999999999999999999999988876666777666543 222 2378999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~ 182 (200)
++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..+... ..+++++++||+++.
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 9999999999999999988888776532 3679999999999996542 2223222211 234579999999999
Q ss_pred CHHHHHHHHHHhhcccC
Q 028986 183 NINQLFEVLITCTSSYC 199 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~~ 199 (200)
|++++|++|.+.+.++.
T Consensus 171 gv~~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 171 NIDITLQWLIQHSKSRR 187 (188)
T ss_dssp THHHHHHHHHHTCC---
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999887653
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=5.4e-32 Score=196.91 Aligned_cols=168 Identities=29% Similarity=0.539 Sum_probs=142.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
.......+||+|+|++|||||||+++|+.+.+...+.++.+.+........ ++..+.+.+||+||++.+...+..++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 345567899999999999999999997776666666677777776666666 4445899999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
+|++++|||++++.+++.+..|+..+... ..++|+++|+||+|+..... ..+...++...+++++++||+++.|+++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999999877 35789999999999965443 2355677888899999999999999999
Q ss_pred HHHHHHHhhccc
Q 028986 187 LFEVLITCTSSY 198 (200)
Q Consensus 187 ~~~~i~~~~~~~ 198 (200)
+|++|.+.+.+.
T Consensus 165 l~~~l~~~l~~~ 176 (221)
T 3gj0_A 165 PFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999987653
No 82
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.2e-30 Score=184.66 Aligned_cols=165 Identities=29% Similarity=0.384 Sum_probs=131.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccCc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRGA 107 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~ 107 (200)
...+||+|+|++|||||||+++|++.. +...+ ++.+.++....+.+ ++..+.+.+||++|.+. +...+..+++.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 456899999999999999999999633 23322 33455555555555 45568899999999765 445667778889
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 186 (200)
|++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|+++
T Consensus 82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 99999999999999999999988877643 45789999999999976667777888888888899999999999999999
Q ss_pred HHHHHHHhhcc
Q 028986 187 LFEVLITCTSS 197 (200)
Q Consensus 187 ~~~~i~~~~~~ 197 (200)
+|++|.+.+..
T Consensus 162 lf~~l~~~~~~ 172 (192)
T 2cjw_A 162 LFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=183.42 Aligned_cols=163 Identities=19% Similarity=0.262 Sum_probs=127.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCC-CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 107 (200)
...+.++|+|+|++|+|||||+++|.+.. +...+.++.+ .....+.+.+ +.+.+||+||++.+...+..+++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS---CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 34567999999999999999999999876 4444555554 3334444432 6899999999999999999999999
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcCC---CCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCC
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS---PDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAK 179 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~ 179 (200)
|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... ...+++.+.+. ..+++++++||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999999999888888776543 58999999999999653 33555555553 235689999999
Q ss_pred CCCCHHHHHHHHHHhhccc
Q 028986 180 TADNINQLFEVLITCTSSY 198 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~~ 198 (200)
++.|++++|++|.+.+.+.
T Consensus 170 ~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp TTBTHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=9e-31 Score=182.78 Aligned_cols=160 Identities=19% Similarity=0.342 Sum_probs=126.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|+|||||+++|.+..+.. +.++.+.. ...+.+. ...+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK---NLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET---TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC---CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 456899999999999999999999887653 34444433 3334443 27899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHH-----HHHcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i 184 (200)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..... ..+.... +...+++++++||+++.|+
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 99999999999998888887765542 36899999999999976532 2222222 2234568999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
+++|++|.+.+.++
T Consensus 157 ~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 157 DEAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988653
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.7e-30 Score=180.65 Aligned_cols=161 Identities=21% Similarity=0.250 Sum_probs=128.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+|+|++|||||||+++|.+.. ...+.++.+.. ...+.+. ...+.+|||||++++...+..+++.+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 89 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR---GFKLNIWDVGGQKSLRSYWRNYFESTDGL 89 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET---TEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC---CEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 567899999999999999999999887 45555555533 3334442 27899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 184 (200)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+..... .++..+... ..+++++++||+++.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 90 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 9999999999999998888877654 246799999999999966432 333333322 24568999999999999
Q ss_pred HHHHHHHHHhhcccC
Q 028986 185 NQLFEVLITCTSSYC 199 (200)
Q Consensus 185 ~~~~~~i~~~~~~~~ 199 (200)
+++|++|.+.+.+.+
T Consensus 168 ~~l~~~l~~~i~~~~ 182 (186)
T 1ksh_A 168 LPGIDWLLDDISSRV 182 (186)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 86
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.3e-29 Score=180.26 Aligned_cols=166 Identities=45% Similarity=0.772 Sum_probs=143.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++.++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 45789999999999999999999999887777777777766666666 45558899999999998888888889999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
++|+|+.+..+++.+..|+..+........|+++|+||+|+...+....+++..++...++.++++|++++.+++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999998888988887665567899999999999776777788889999999999999999999999999999
Q ss_pred HHHhhcc
Q 028986 191 LITCTSS 197 (200)
Q Consensus 191 i~~~~~~ 197 (200)
|.+.+.+
T Consensus 162 l~~~~~~ 168 (199)
T 2f9l_A 162 ILTEIYR 168 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=4.3e-31 Score=183.30 Aligned_cols=157 Identities=19% Similarity=0.343 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 113 (200)
+||+++|++|+|||||+++|.+..+.. +.++.+.. ...+... .+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 74 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS---SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC---CEEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999877654 34455532 2233332 26899999999999999999999999999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHH
Q 028986 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQL 187 (200)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~ 187 (200)
+|++++.+++.+..|+..+... ...+.|+++|+||+|+.... ...+...... ..+++++++||+++.|++++
T Consensus 75 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 75 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 9999999999998888877653 34578999999999996542 2222222211 13457999999999999999
Q ss_pred HHHHHHhhccc
Q 028986 188 FEVLITCTSSY 198 (200)
Q Consensus 188 ~~~i~~~~~~~ 198 (200)
|++|.+.+.++
T Consensus 153 ~~~l~~~i~~~ 163 (164)
T 1r8s_A 153 LDWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=4.3e-31 Score=188.28 Aligned_cols=161 Identities=17% Similarity=0.311 Sum_probs=120.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
..+.++|+|+|++|||||||+++|+++.+.. +.++.+ +....+... .+.+.+||+||++.+...+..+++.+|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK---NICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET---TEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC---CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 4567899999999999999999999877643 334444 223333332 2789999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADN 183 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~ 183 (200)
+++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+..... .+++.+... ..+++++++||+++.|
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999998888887653 245799999999999865422 222222111 2345799999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028986 184 INQLFEVLITCTSSY 198 (200)
Q Consensus 184 i~~~~~~i~~~~~~~ 198 (200)
++++|++|.+.+.++
T Consensus 178 i~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 178 LYDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988764
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=3.5e-30 Score=184.43 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=121.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+++|++|||||||+++|.+..+.. +.++.+... ..+.+.+ +.+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT---EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC---EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 456799999999999999999999877643 344444432 3344433 7899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----------------cCCe
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----------------NGMF 172 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~ 172 (200)
++|+|++++.+++.+..|+..+.+. ...++|+++|+||+|+.. ....+++.+++.. .+++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 9999999999999999998887654 246799999999999865 4566777776552 3457
Q ss_pred EEEecCCCCCCHHHHHHHHHHhh
Q 028986 173 FIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
+++|||++|.|++++|++|.+.+
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998765
No 90
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.1e-29 Score=179.38 Aligned_cols=165 Identities=45% Similarity=0.789 Sum_probs=144.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|.+++...+..+++.+++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 456789999999999999999999999888778888888877777766 4555788899999998888888888899999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 189 (200)
+++|+|..+..+++.+..|+..+........|+++++||+|+...+....+++..++...++.++++|++++.+++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888898887766566789999999999977667778888999999999999999999999999999
Q ss_pred HHHHhh
Q 028986 190 VLITCT 195 (200)
Q Consensus 190 ~i~~~~ 195 (200)
+|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998865
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.2e-29 Score=180.55 Aligned_cols=156 Identities=20% Similarity=0.260 Sum_probs=125.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+++|++|||||||+++|.+..+.. +.++.+.. ...+.+.+ +.+.+||+||++.+...+..+++.+|++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT---EEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 456799999999999999999999987653 44455443 33444433 7899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCeEEEec
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------------NGMFFIETS 177 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 177 (200)
++|+|++++.+++.+..|+..+.+. ...+.|+++|+||+|+.. ....+++.+.+.. .+++++++|
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 9999999999999999998887654 246799999999999965 4556666665432 346799999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 028986 178 AKTADNINQLFEVLITC 194 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~ 194 (200)
|++|.|++++|++|.+.
T Consensus 173 a~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTTBSHHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHHhh
Confidence 99999999999999865
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=3.9e-30 Score=181.53 Aligned_cols=161 Identities=19% Similarity=0.323 Sum_probs=123.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
.....+.++|+|+|++|||||||+++|.+..+ ..+.++.+... ..+.+.+ +.+.+||+||++++...+..+++.
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT---EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC---EEEEEEECCCCHhHHHHHHHHhcc
Confidence 34456789999999999999999999999876 33444444333 2333322 789999999999999999999999
Q ss_pred ccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCC
Q 028986 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKT 180 (200)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~ 180 (200)
+|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||++
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 999999999999999999988888776542 467999999999998653 23344444332 2355899999999
Q ss_pred CCCHHHHHHHHHHhh
Q 028986 181 ADNINQLFEVLITCT 195 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~ 195 (200)
+.|++++|++|.+.+
T Consensus 167 g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 167 GEGLCQGLEWMMSRL 181 (181)
T ss_dssp TBTHHHHHHHHHTC-
T ss_pred CcCHHHHHHHHHhhC
Confidence 999999999998653
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.8e-30 Score=185.55 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=122.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEE--EEEecCCcEEEEEEEeCCChhhhhhcc---c
Q 028986 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ--TIALQDSTTVKFEIWDTAGQERYAALA---P 101 (200)
Q Consensus 27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~---~ 101 (200)
..+.++.+||+|+|++|||||||++++.+... .. ++.+.++... ...+.++..+.+.+||++|++.+.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 34567889999999999999999998887533 22 3333333222 223334455789999999999877665 7
Q ss_pred ccccCccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-------CcCCHHHHHHHHH----H
Q 028986 102 LYYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-------REVPAQDGIEYAE----K 168 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~----~ 168 (200)
.+++.+|++|+|||++++ +++..+..|+..+... ..++|+++|+||+|+... +.+..++...++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 899999999999999997 6677777777776544 568999999999998552 3444555667777 6
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 169 NGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 169 ~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
++++++++||++ .|++++|+.|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 788999999999 99999999999875
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=180.04 Aligned_cols=160 Identities=19% Similarity=0.323 Sum_probs=123.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|||||||+++|.++.+. .+.++.+... ..+.+.+ +.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 87 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT---EEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 45789999999999999999999987765 3344444332 2333332 7899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 184 (200)
++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||+++.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 99999999999999988988876542 357999999999999653 23444444432 23568999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
+++|++|.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 166 CQGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.1e-29 Score=177.93 Aligned_cols=160 Identities=18% Similarity=0.267 Sum_probs=123.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+. .+.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~---~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ---GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET---TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45789999999999999999999987542 234444432 3334443 27899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 184 (200)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+..... .++..+... ..+++++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999999998888776543 246789999999999976432 233332211 23557999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
+++|++|.+.+.++
T Consensus 166 ~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 166 QDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.4e-30 Score=183.72 Aligned_cols=160 Identities=21% Similarity=0.341 Sum_probs=125.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
++.++|+|+|++|||||||+++|.++.+.. +.++.+.. ...+... ...+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 93 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK---NISFEVWDLGGQTGVRPYWRCYFSDTDAV 93 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET---TEEEEEEEECCSSSSCCCCSSSSTTCCEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC---CEEEEEEECCCCHhHHHHHHHHhhcCCEE
Confidence 457899999999999999999998876643 33444433 2333333 27899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i 184 (200)
++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+..... .++..+.. ...+++++++||+++.|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 99999999999998888887775542 46899999999999965432 22222221 223557999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028986 185 NQLFEVLITCTSSY 198 (200)
Q Consensus 185 ~~~~~~i~~~~~~~ 198 (200)
++++++|.+.+.+.
T Consensus 172 ~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 172 VEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=2.9e-30 Score=182.75 Aligned_cols=165 Identities=19% Similarity=0.405 Sum_probs=121.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC--CCCCCCccccceeEEEEEEEec--CCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQ--DSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
++||+|+|++|||||||+++|.+. .+...+.++.+.++....+... ++..+.+.+||++|++++...+..++..+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 3444455666666555443321 233478999999999999999999999999
Q ss_pred EEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCe----EEEecCCC
Q 028986 109 VAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKNGMF----FIETSAKT 180 (200)
Q Consensus 109 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~ 180 (200)
++++|||++++ .+++.+..|+..+... ..+.|+++|+||+|+...+... .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 5788999999988765 3578999999999986543322 22334555556776 99999999
Q ss_pred CC-CHHHHHHHHHHhhccc
Q 028986 181 AD-NINQLFEVLITCTSSY 198 (200)
Q Consensus 181 ~~-~i~~~~~~i~~~~~~~ 198 (200)
+. +++++++.|.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 9999999999887653
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=4.9e-32 Score=194.80 Aligned_cols=162 Identities=31% Similarity=0.607 Sum_probs=133.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+++++|++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 5789999999999999999999998877666555554443 223333 34447888999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.... .+..++..++++.+++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999998886 7888777653 378999999999996542 4555677778888887 89999
Q ss_pred cCCCCCCHHHHHHHHHHhh
Q 028986 177 SAKTADNINQLFEVLITCT 195 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~ 195 (200)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998764
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.4e-29 Score=177.55 Aligned_cols=159 Identities=23% Similarity=0.369 Sum_probs=122.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+.++|+|+|++|||||||+++|.++.+ ..+.++.+... ..+.+.+ ..+.+||+||++.+...+..+++.+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 89 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAV 89 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT---EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 5678999999999999999999998765 33444555332 3333432 7899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCCH
Q 028986 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI 184 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i 184 (200)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..+++.+.... .+++++++||+++.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 90 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999999988888876543 4689999999999986542 33444433321 2447999999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
++++++|.+.+.+
T Consensus 168 ~~l~~~l~~~~~~ 180 (183)
T 1moz_A 168 TEGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 100
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=2.6e-28 Score=187.34 Aligned_cols=164 Identities=30% Similarity=0.577 Sum_probs=139.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
...++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 3458999999999999999999999887766666665544 333444 45568899999999999999999999999999
Q ss_pred EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (200)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (200)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+... +.+..+++.+++...++ +++++
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 9999999999998886 7888887763 38999999999998553 56778888999999987 89999
Q ss_pred cCCCCCCHHHHHHHHHHhhcc
Q 028986 177 SAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~~~ 197 (200)
||++|.|++++|++|.+.+..
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999987753
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=9.2e-29 Score=178.88 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=114.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAV 109 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ 109 (200)
...++|+|+|++|+|||||+++|++..+...+.+ ....+.. +.+.+...+.+.+|||||++.+.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4678999999999999999999999887665543 3333322 445443347899999999998887 78888999999
Q ss_pred EEEEEeCCCHH-hHHHH-HHHHHHHHH--cCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHH----------------
Q 028986 110 AVVVYDITSPD-SFNKA-QYWVKELQK--HGSPDIVMALVGNKADLHEKREVP--AQDGIEYAE---------------- 167 (200)
Q Consensus 110 ~i~v~d~~~~~-s~~~~-~~~~~~i~~--~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~---------------- 167 (200)
+|+|||+++.. ++... ..|...+.. ....++|+++|+||+|+....... .+.+.+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999853 45555 444444443 235578999999999997653311 011111111
Q ss_pred -----------------Hc--CCeEEEecCCCC------CCHHHHHHHHHHhh
Q 028986 168 -----------------KN--GMFFIETSAKTA------DNINQLFEVLITCT 195 (200)
Q Consensus 168 -----------------~~--~~~~~~~S~~~~------~~i~~~~~~i~~~~ 195 (200)
.+ +++|++|||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998763
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=2.9e-28 Score=169.52 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=112.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc-
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR- 105 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 105 (200)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+|||||++.+. .....++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT---EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC---cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 57999999999999999999998765443333333333333344432 579999999987653 23344554
Q ss_pred -CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 106 -GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 106 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
++|++++|+|+++.+. ...|+..+.+ .+.|+++|+||+|+...+.+.. +..+++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 7999999999998643 3446666654 3689999999999854433332 357778888999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028986 185 NQLFEVLITCTS 196 (200)
Q Consensus 185 ~~~~~~i~~~~~ 196 (200)
+++|++|.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (165)
T 2wji_A 153 EELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998774
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=187.04 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=121.6
Q ss_pred CCCceeeEEEEcCC---------CCcHHHHHHHHHc---CCCCCCCcccc-ceeEEEEEEE-------------ecCCcE
Q 028986 29 AKNLRVKLVLLGDS---------GVGKSCIVLRFVR---GQFDPTSKVTV-GASFLSQTIA-------------LQDSTT 82 (200)
Q Consensus 29 ~~~~~~~i~i~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~ 82 (200)
.....+||+|+|.+ |||||||+++|++ ..+...+.++. +.++....+. ..++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 44667999999999 9999999999999 44544444443 2222111111 013455
Q ss_pred EEEEEEe-----------------------CCChhhhhhccccccc---------------------CccEEEEEEeCCC
Q 028986 83 VKFEIWD-----------------------TAGQERYAALAPLYYR---------------------GAAVAVVVYDITS 118 (200)
Q Consensus 83 ~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 118 (200)
+.+.+|| ++|++.+...+..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 5556666666777776 7999999999999
Q ss_pred H--HhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986 119 P--DSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 119 ~--~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
+ .+++.+..|+..+... ...++|+++|+||+|+...+.+ ++..+++.. .+++++++||+++.|++++|++|.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 9999999999888764 3457999999999998654443 566777766 48899999999999999999999987
Q ss_pred hc
Q 028986 195 TS 196 (200)
Q Consensus 195 ~~ 196 (200)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=5.8e-28 Score=169.61 Aligned_cols=156 Identities=14% Similarity=0.224 Sum_probs=117.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+.+ ..+.+|||||++.+...+..++..+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND---KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT---EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC---ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 45678999999999999999999999887665555554444444444433 468899999999999999999999999
Q ss_pred EEEEEeCCCH---HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-------C--CeEEEec
Q 028986 110 AVVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-------G--MFFIETS 177 (200)
Q Consensus 110 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~S 177 (200)
+++|+|++++ .+++.+ ..+ ...++|+++|+||+|+... ..++........ + ++++++|
T Consensus 82 ~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 9999999884 333322 222 2347899999999998653 223333333222 1 5799999
Q ss_pred CCCCCCHHHHHHHHHHhhccc
Q 028986 178 AKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 178 ~~~~~~i~~~~~~i~~~~~~~ 198 (200)
|+++.|++++|++|.+.+...
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999887654
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.3e-28 Score=196.36 Aligned_cols=163 Identities=23% Similarity=0.359 Sum_probs=125.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 108 (200)
.....++|+|+|.+|+|||||+++|++..+.. ..+|.+..+. .+... .+.+.+|||+|++.+...+..+++.+|
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~ad 391 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK---NVKFNVWDVGGQDKIRPLWRHYYTGTQ 391 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESS---SCEEEEEEECCCGGGSGGGGGGGTTCC
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeC---CEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 34568999999999999999999999987543 3445554443 23332 268999999999999999999999999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCC
Q 028986 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTAD 182 (200)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~ 182 (200)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.... ..++..+... ..+++++++||++|.
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 9999999999999999988888775532 4689999999999986532 2333332221 123469999999999
Q ss_pred CHHHHHHHHHHhhcccC
Q 028986 183 NINQLFEVLITCTSSYC 199 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~~ 199 (200)
|++++|++|.+.+.++.
T Consensus 470 gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 470 GLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp THHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999987653
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.8e-27 Score=173.89 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=114.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh------hhh---hhccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ------ERY---AALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~------~~~---~~~~~ 101 (200)
...++|+|+|++|||||||+++|++..+.....+.............. ...+.+|||||. +.. ...+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK---LNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET---TEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC---CCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 567899999999999999999999976532211111222222222222 268999999998 321 11223
Q ss_pred ccccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHH---HHHHHHHHcC--CeEE
Q 028986 102 LYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ---DGIEYAEKNG--MFFI 174 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 174 (200)
.++..+|++|+|+|++++.+++ ....|+..+... ..+.|+++|+||+|+...+++..+ ....++...+ ++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 4567789999999999987764 234555555543 347899999999999876666554 4556666666 8899
Q ss_pred EecCCCCCCHHHHHHHHHHhhccc
Q 028986 175 ETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++||++|.|++++|++|.+.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=186.72 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=119.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 109 (200)
....++|+|+|++|+|||||+++|.+..+... .++.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE---TTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec---CcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 45678999999999999999999998776432 234443332 2222 22789999999999999999999999999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCC
Q 028986 110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADN 183 (200)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~ 183 (200)
+|+|||++++.+++.+..|+..+... ...++|+++|+||+|+..... .+++...... .+++++++||+++.|
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 99999999999999887777666443 346899999999999876432 2333322211 245799999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028986 184 INQLFEVLITCTSSY 198 (200)
Q Consensus 184 i~~~~~~i~~~~~~~ 198 (200)
++++|++|.+.+.++
T Consensus 314 i~el~~~l~~~l~~~ 328 (329)
T 3o47_A 314 LYEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4.3e-27 Score=178.88 Aligned_cols=161 Identities=21% Similarity=0.342 Sum_probs=125.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCC---CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----hhccccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-----AALAPLY 103 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~ 103 (200)
..+||+++|++|||||||+++|+++... ..+.+|.+..+.. +.+ ++ .+.+.+||+||++.+ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~-~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRF-LG-NMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEE-TT-TEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEe-CC-ceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 4689999999999999999999987322 1334455554443 333 23 378999999999887 6778888
Q ss_pred ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCC--CCc----CCHHHHHHHHHHcC---Ce
Q 028986 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHE--KRE----VPAQDGIEYAEKNG---MF 172 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~ 172 (200)
++.+|++|+|||++++.+++.+..|...+.... .+++|+++|+||+|+.. .+. ...+++.+++..++ ++
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 999999999999999999998877765544321 56799999999999976 333 44577788888886 78
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 173 FIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++++||++ .++.++|..+++.+..
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcC
Confidence 99999999 8999999998876543
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=3e-27 Score=168.39 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=108.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhhc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAAL 99 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 99 (200)
....++|+|+|++|+|||||+++|++..+.....++.+.+........ ++ .+.+||||| ++.+...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 456789999999999999999999998754444444444433333333 22 589999999 7777777
Q ss_pred ccccccCc---cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH--HHHHH-HHHHcCCeE
Q 028986 100 APLYYRGA---AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--QDGIE-YAEKNGMFF 173 (200)
Q Consensus 100 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~ 173 (200)
+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+....+... +++.+ +....++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 77777766 9999999999876665432 2233332 4789999999999976544221 22222 222236789
Q ss_pred EEecCCCCCCHHHHHHHHHHhhc
Q 028986 174 IETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+++||+++.|++++|++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998875
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4.8e-27 Score=166.58 Aligned_cols=155 Identities=24% Similarity=0.230 Sum_probs=114.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhhhhhcccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-----------QERYAALAPL 102 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~ 102 (200)
++|+|+|++|||||||+++|.+..+...+.++.+... ..+... .+.+||+|| ++.+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC-----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999999887655554433322 222222 588999999 6777777777
Q ss_pred cccC-ccEEEEEEeCCCHHhHHHH-HHHHHH---------HHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Q 028986 103 YYRG-AAVAVVVYDITSPDSFNKA-QYWVKE---------LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM 171 (200)
Q Consensus 103 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 171 (200)
+++. ++++++++++.+..+++.+ ..|... +......++|+++|+||+|+.... .++..+++..+++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence 7776 6666666666656666555 555432 222224578999999999987654 5567788888876
Q ss_pred e-------EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 172 F-------FIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 172 ~-------~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+ ++++||++|.|++++|++|.+.+.+.
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 4 79999999999999999999988764
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5.1e-27 Score=166.31 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=118.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR 105 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~ 105 (200)
+.++|+++|++|||||||+++|++..+.....++.+.+.....+...+ ..+.+|||||++.+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC---cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 568999999999999999999998654333333334444444444432 689999999987653 33444553
Q ss_pred --CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986 106 --GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (200)
Q Consensus 106 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 183 (200)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.....+. .+..++++.++++++++|++++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5899999999876 4455667766654 478999999999986544333 356778888899999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028986 184 INQLFEVLITCTSSY 198 (200)
Q Consensus 184 i~~~~~~i~~~~~~~ 198 (200)
++++|++|.+.+.+.
T Consensus 156 v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 156 IEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.8e-27 Score=179.96 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=117.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh---cccccccCcc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA---LAPLYYRGAA 108 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d 108 (200)
||+++|+.|||||||++++.+...+. ...+|.+.++.. + +. .+++++|||+|++++.. .+..++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~-~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---ST-LIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CS-SSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---cc-EEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 68999999999999999888664322 244566655542 2 22 27899999999999864 3578899999
Q ss_pred EEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-------CcCCHHHHHHHHHH----cCCeEEE
Q 028986 109 VAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-------REVPAQDGIEYAEK----NGMFFIE 175 (200)
Q Consensus 109 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~ 175 (200)
++|+|||++++ +....+..|+..+... .+++|+++++||+|+... +++..++.+++++. +++.+++
T Consensus 75 ~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 75 ALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 99999999997 3333334445555444 468999999999999764 24555566667764 5789999
Q ss_pred ecCCCCCCHHHHHHHHHHhhccc
Q 028986 176 TSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+||++ .+|.++|..|++.+.+.
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 58999999998877543
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.2e-26 Score=160.26 Aligned_cols=150 Identities=19% Similarity=0.140 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYR 105 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~ 105 (200)
.||+++|++|+|||||+++|.+..+.. ...+....+.....+...+ ..+.+||+||... +...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR---GRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT---EEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC---ceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999999976432 2222223333333444432 4789999999875 3455666788
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI 184 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 184 (200)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.... +++.+++ .+++ +++++||+++.|+
T Consensus 79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCCh
Confidence 9999999999998633321 122222332 368899999999986542 2334444 5677 7999999999999
Q ss_pred HHHHHHHHHhh
Q 028986 185 NQLFEVLITCT 195 (200)
Q Consensus 185 ~~~~~~i~~~~ 195 (200)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999875
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.4e-25 Score=170.50 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=123.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcccccee-EEEEEEEecCCcEEEEEEEeCCChhh----------hh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGAS-FLSQTIALQDSTTVKFEIWDTAGQER----------YA 97 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~ 97 (200)
+....-.|+|+|.+|||||||+|+|++..+.........+. ........ ....++.+|||||... +.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~--~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI--PNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec--CCCCeEEEEECcCCCccccchhHHHHHH
Confidence 34556689999999999999999999987654322221111 11112222 2126899999999733 33
Q ss_pred hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEE
Q 028986 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIE 175 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (200)
..+..++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+........+....+...++ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 5666778899999999999998777777777777765 368999999999997455555666677777765 68999
Q ss_pred ecCCCCCCHHHHHHHHHHhhcc
Q 028986 176 TSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 176 ~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
+||++|.|+++++++|.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999998865
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=5.5e-26 Score=161.65 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=111.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhh
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYA 97 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~ 97 (200)
.+....++|+|+|++|+|||||+++|++..... ..++.+.+........ + ..+.+||||| ++.+.
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~-~---~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLV-N---SKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEE-T---TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEE-C---CcEEEEECCCCccccCChhhHHHHH
Confidence 344667899999999999999999999987432 2333333332222222 2 2478999999 66677
Q ss_pred hcccccccCc---cEEEEEEeCCCHHhH--HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHc-
Q 028986 98 ALAPLYYRGA---AVAVVVYDITSPDSF--NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKN- 169 (200)
Q Consensus 98 ~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~- 169 (200)
..+..+++.+ |++++|+|+++..+. ..+..|+. .. +.|+++|+||+|+....+ ...+++.+++...
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777776655 999999999875332 33333333 22 689999999999865432 2234445555553
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 170 GMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 170 ~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.++++++||+++.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4689999999999999999999998875
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=8.2e-27 Score=189.58 Aligned_cols=166 Identities=20% Similarity=0.346 Sum_probs=125.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEE------EEec-CCcEEEEEEEeCCChhhhhhccc
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT------IALQ-DSTTVKFEIWDTAGQERYAALAP 101 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~l~D~~g~~~~~~~~~ 101 (200)
.....+||+++|.+|||||||+++|++..+...+.++.+..+.... +.+. ++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3467899999999999999999999998887777777777665442 1111 22347899999999999999999
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
.+++.+|++|+|+|+++. +.+..|+..+.... .+.|+++|+||+|+...+.+..++..+++...+++++++||+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999865 45577888887763 47899999999999887777888888888888999999999999
Q ss_pred CCHHHHHHHHHHhhccc
Q 028986 182 DNINQLFEVLITCTSSY 198 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~~~ 198 (200)
.|+++++++|.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999987653
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=4.3e-26 Score=169.24 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=114.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc------ccccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL------APLYY 104 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~ 104 (200)
.+.++|+++|++|||||||+|+|++..+.....+..+.......+... . ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--G-YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--T-EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--C-eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 457899999999999999999999976532222323333323333332 2 68999999998665432 23444
Q ss_pred --cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 105 --RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 105 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
..+|++++|+|+++.++. ..|...+.. .++|+++|+||+|+...+.+.. ...++++.++++++++||+++.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred hhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 579999999999986543 235555543 3789999999999865444433 3677888899999999999999
Q ss_pred CHHHHHHHHHHhhc
Q 028986 183 NINQLFEVLITCTS 196 (200)
Q Consensus 183 ~i~~~~~~i~~~~~ 196 (200)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.3e-26 Score=162.25 Aligned_cols=155 Identities=22% Similarity=0.228 Sum_probs=109.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPL 102 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~ 102 (200)
..++|+|+|++|+|||||+++|.+..... ...+....++....+.+.+ ..+.+|||||+++... ....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG---MPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT---EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC---eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 35789999999999999999999875422 1222333334444455533 4689999999753211 1123
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
+++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+..... .++...+++++++||+++.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCT
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCC
Confidence 5788999999999998877653 4677777766556799999999999853211 1112246789999999999
Q ss_pred CHHHHHHHHHHhhcc
Q 028986 183 NINQLFEVLITCTSS 197 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~ 197 (200)
|++++|++|.+.+..
T Consensus 152 gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 152 GVDVLRNHLKQSMGF 166 (172)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999987653
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=8.4e-26 Score=164.25 Aligned_cols=166 Identities=11% Similarity=0.093 Sum_probs=109.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA 98 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 98 (200)
+....++|+|+|.+|+|||||+++|++...........+.+...............+.+||||| ++.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 3456789999999999999999999997632222222222222222333222235789999999 445555
Q ss_pred cccccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHH-----
Q 028986 99 LAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEK----- 168 (200)
Q Consensus 99 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~----- 168 (200)
.+..++.. +|++++|+|++++.+. ....|+..+.. .+.|+++|+||+|+....+.. .+...+....
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 55566555 8889999999875332 22344455544 468899999999986543311 1122222222
Q ss_pred --cCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 169 --NGMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 169 --~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
.+++++++||+++.|+++++++|.+.+.+.
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 456899999999999999999999988653
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=1.8e-25 Score=166.81 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=112.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc-
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR- 105 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 105 (200)
.++|+++|++|||||||+|+|++........+ +.+.......+.. ...+.+|||||+..+. ..+..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 57999999999999999999998753322222 2222222333322 3579999999987654 33444554
Q ss_pred -CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 106 -GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 106 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
.+|++++|+|+++.+.. ..|...+.+ .++|+++|+||+|+...+.+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986543 345555554 378999999999986443333 3457778888999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028986 185 NQLFEVLITCTS 196 (200)
Q Consensus 185 ~~~~~~i~~~~~ 196 (200)
+++|++|.+.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 121
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.7e-26 Score=166.35 Aligned_cols=146 Identities=14% Similarity=0.224 Sum_probs=103.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc
Q 028986 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY 104 (200)
Q Consensus 28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 104 (200)
......++|+|+|++|+|||||+++|.+..+... +.++.+..+ ....+.+||+||++.+...+..++
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~ 76 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYL 76 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------eCceEEEEECCCcHHHHHHHHHHH
Confidence 3456678999999999999999999999876442 222222111 225789999999998888888888
Q ss_pred cC----ccEEEEEEeCC-CHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCcCC------HHHHHHHHHHc
Q 028986 105 RG----AAVAVVVYDIT-SPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVP------AQDGIEYAEKN 169 (200)
Q Consensus 105 ~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~ 169 (200)
+. +|++|+|+|++ ++.++..+..|+..+... ...++|+++|+||+|+....... .+++..++...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 76 89999999999 888888888887776553 34689999999999997765433 34455666666
Q ss_pred CCeEEEecCCCCCC
Q 028986 170 GMFFIETSAKTADN 183 (200)
Q Consensus 170 ~~~~~~~S~~~~~~ 183 (200)
++.++++|++++.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 67788888887764
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=7.7e-26 Score=167.65 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=110.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh----------ccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----------LAPLY 103 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~ 103 (200)
.+|+++|.+|||||||+|+|++........+..+.+.....+...+ ..+.+|||||...+.. ....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE---HLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT---EEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC---eEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 3799999999999999999999754332333344444444444433 4799999999765443 34455
Q ss_pred c--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986 104 Y--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (200)
Q Consensus 104 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 181 (200)
+ ..+|++|+|+|+++.+....+. ..+. ..+.|+++|+||+|+...+.... ....+...++++++++||++|
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~---~~l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLT---SQLF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHH---HHHT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGT
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHH---HHHH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCC
Confidence 6 7899999999999865444333 2232 34789999999999865433322 245577778999999999999
Q ss_pred CCHHHHHHHHHHh
Q 028986 182 DNINQLFEVLITC 194 (200)
Q Consensus 182 ~~i~~~~~~i~~~ 194 (200)
.|+++++++|.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999876
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=6.6e-26 Score=169.73 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=112.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh----------ccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----------LAP 101 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~ 101 (200)
+.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+...+ ..+.+|||||...+.. .+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD---HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS---CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC---CceEEEECcCCCccccccccCCHHHHHHH
Confidence 368999999999999999999999764333333333444444444432 4688999999765442 122
Q ss_pred ccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 102 LYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 102 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
.++ ..+|++++|+|+++.+.... |...+.+. ++|+++|+||+|+...+... .....+...++++++++||+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcC
Confidence 222 68999999999998654443 33334433 68999999999985443322 23466777889999999999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 028986 180 TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~ 197 (200)
+|.|+++++++|.+.+.+
T Consensus 152 ~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp GGHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999887653
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=5.8e-25 Score=164.51 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=114.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------cccccc-
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAPLYY- 104 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~- 104 (200)
+.++|+++|++|||||||+++|++..+.....++.+.+.....+...+ ..+.+||+||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE---KEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT---EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC---ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 357999999999999999999999765333334444444444444433 4699999999765544 344444
Q ss_pred -cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986 105 -RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (200)
Q Consensus 105 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 183 (200)
.++|++++|+|+++.. ....|...+.... ..|+++|+||+|+...+..... ...+.+.++++++++|+++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence 6799999999999863 2233444444331 2899999999998544333332 5677778899999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 028986 184 INQLFEVLITCTSS 197 (200)
Q Consensus 184 i~~~~~~i~~~~~~ 197 (200)
+++++++|.+.+..
T Consensus 153 i~~l~~~i~~~~~~ 166 (271)
T 3k53_A 153 VEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=1.2e-25 Score=176.66 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=115.8
Q ss_pred cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--
Q 028986 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL-- 99 (200)
Q Consensus 23 ~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-- 99 (200)
+.++..+....++|+|+|+.++|||||+++|++..+.. ...+..+.+.....+.+... ..+.+|||||+.++...
T Consensus 24 msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~l~liDTpG~~d~~~l~~ 101 (423)
T 3qq5_A 24 YTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTPGLDDVGELGR 101 (423)
T ss_dssp CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT--EEEEEEECSSTTCCCTTCC
T ss_pred CccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC--CeEEEEECcCCCcccchhH
Confidence 44555566778999999999999999999999876532 22222333333444444333 37899999998766544
Q ss_pred -----ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEE
Q 028986 100 -----APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFI 174 (200)
Q Consensus 100 -----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 174 (200)
+..++..+|++|+|+|++.. +....|+..+.+. ++|+++|+||+|+...... +...+++..++++++
T Consensus 102 ~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 102 LRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVL 173 (423)
T ss_dssp CCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCC
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEE
Confidence 23467889999999999433 3345566666655 7889999999999776553 555666667789999
Q ss_pred EecCCCCCCHHHHHHHHHHhhcc
Q 028986 175 ETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 175 ~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++||+++.|++++|++|.+.+.+
T Consensus 174 ~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 174 LVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCSSCCTTSTTTHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999999998843
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=3.1e-24 Score=170.42 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=112.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAAL 99 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~ 99 (200)
+..++|+++|.+|+|||||+|+|++..+. ....+..+.+.....+... + ..+.+|||||+ +.+...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-Q--QEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET-T--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC-C--eEEEEEECCCcCcCccccchHHHHHHH
Confidence 45789999999999999999999997653 1122222223323333332 2 36899999997 444433
Q ss_pred cc-ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-HH----cCCeE
Q 028986 100 AP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-EK----NGMFF 173 (200)
Q Consensus 100 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~ 173 (200)
.. .+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+.+......++..+.. .. .++++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 33 467889999999999998777664 46666654 37899999999999766554333333322 22 36789
Q ss_pred EEecCCCCCCHHHHHHHHHHhhccc
Q 028986 174 IETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+++||++|.|++++|+.+.+.+.+.
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887653
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.9e-24 Score=165.89 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=115.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhcccccc---cCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLYY---RGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~~ 107 (200)
+|+|+|.++||||||+++|++........+..+.......+.+.++ ..+.+||+||..+ +..+...++ ..+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC--ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 6889999999999999999986532111111111222223444332 3789999999654 222334444 349
Q ss_pred cEEEEEEeCCC---HHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecCCC
Q 028986 108 AVAVVVYDITS---PDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKT 180 (200)
Q Consensus 108 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~ 180 (200)
|++|+|+|+++ +++++.+..|+..+.... ..++|+++|+||+|+.... +...++++.+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 778888888999888764 2579999999999986432 34566666665 6899999999
Q ss_pred CCCHHHHHHHHHHhhccc
Q 028986 181 ADNINQLFEVLITCTSSY 198 (200)
Q Consensus 181 ~~~i~~~~~~i~~~~~~~ 198 (200)
+.|+++++++|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988764
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=6.3e-24 Score=169.43 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=98.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc--------cc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA--------PL 102 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 102 (200)
..++|+|+|++|+|||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||..++...+ ..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g---~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK---TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT---EEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 45789999999999999999999875322 2222233333333344422 579999999987654333 44
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
+++.+|++++|+|++++.+++.+..+...+.... +.|+++|+||+|+...... ....+......+++++||+++.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence 6889999999999999877654333333333332 7899999999999765442 2233443324689999999999
Q ss_pred CHHHHHHHHHHhhc
Q 028986 183 NINQLFEVLITCTS 196 (200)
Q Consensus 183 ~i~~~~~~i~~~~~ 196 (200)
|+++++++|.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998876
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=8.1e-24 Score=160.15 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=108.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~ 101 (200)
.+..+|+|+|.+|+|||||+|+|++..+..... +............. ...++.+|||||... +.....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~---~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE---GRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe---CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 345679999999999999999999987653222 11111111111111 226899999999654 445566
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAK 179 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~ 179 (200)
.+++.+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+..... .....+..+ ..+++++||+
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred HHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence 77899999999999997643332 2233445443 24789999999999865432 022333332 3479999999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 028986 180 TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~ 197 (200)
++.|+++++++|.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 156 DERQVAELKADLLALMPE 173 (301)
T ss_dssp CHHHHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999887643
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.8e-23 Score=160.96 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=116.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh---------hccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA---------ALAP 101 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~ 101 (200)
...++|+++|++|||||||+++|.+........+..........+... ...+.+|||||..... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG---YFRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET---TEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec---CceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 456799999999999999999999876321111111122222222222 2579999999964321 1122
Q ss_pred ccccCccEEEEEEeCCCHH--hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 102 LYYRGAAVAVVVYDITSPD--SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
.+...+|++++|+|+++.. +++....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||+
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCC
Confidence 3445699999999999876 67777888888876533 789999999999865433 244566667788899999999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 028986 180 TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~ 197 (200)
+|.|+++++++|.+.+..
T Consensus 319 ~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 131
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=8.4e-24 Score=163.32 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=89.0
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------HHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~ 151 (200)
+.+++||++|++.++..|..++++++++|+|+|+++ ..+++....|+..+... ...++|+++++||+|+
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence 789999999999999999999999999999999999 67898888888887654 3467999999999998
Q ss_pred CCCC----------------cCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 152 HEKR----------------EVPAQDGIEYAE-----------KNGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 152 ~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
...+ ....+++.+++. ..++.++++||+++.||+++|+++.+.+.+
T Consensus 281 ~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 5321 255677777652 346789999999999999999999987754
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=6.7e-24 Score=169.37 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=116.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA 98 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 98 (200)
....++|+++|.+++|||||+++|++.... ....+..+.+.....+...+ ..+.+||||| ++.+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT---EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC---ceEEEEECCCCCcCcccchHHHHHHH
Confidence 456789999999999999999999976431 11222222222222333322 3799999999 566665
Q ss_pred ccc-ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCe
Q 028986 99 LAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMF 172 (200)
Q Consensus 99 ~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~ 172 (200)
.+. .+++.+|++++|+|++++.+ +....|...+.. .+.|+++|+||+|+...++...++..+.+... .++
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 544 37788999999999998543 233445555554 36899999999999877666667777776654 578
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 173 FIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++++||++|.|++++|++|.+.+.+.
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999887543
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=2.6e-23 Score=160.06 Aligned_cols=115 Identities=15% Similarity=0.271 Sum_probs=97.5
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------HHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~ 151 (200)
+.+++||++|++.++..|..++++++++|+|+|+++ ..+++....|+..+.... ..++|+++++||+|+
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCc
Confidence 789999999999999999999999999999999998 456888888888876542 467999999999998
Q ss_pred CCCC---------------cCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 152 HEKR---------------EVPAQDGIEYAE-----------KNGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
...+ ....+++.+++. ..++.+++|||+++.||+++|+++.+.+.+
T Consensus 273 ~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 273 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 5322 256778888876 356789999999999999999999988754
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=2.7e-22 Score=157.82 Aligned_cols=166 Identities=16% Similarity=0.081 Sum_probs=116.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEE------------------EEEecCCcEEEEEEEeC
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ------------------TIALQDSTTVKFEIWDT 90 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~D~ 90 (200)
..+..++|+++|++++|||||+++|++........... ...... ...........+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34667899999999999999999999854332111000 000000 00000112268999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHH
Q 028986 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEK 168 (200)
Q Consensus 91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~ 168 (200)
||++.+...+...+..+|++++|+|++++.++.....++..+.... ..|+++|+||+|+....+. ..+++.++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998776666777777666543 2479999999998654321 11222222222
Q ss_pred c---CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 169 N---GMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 169 ~---~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
. +++++++||++|.|+++++++|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2 5689999999999999999999987643
No 135
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=7.5e-22 Score=155.50 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=106.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCC---CCCCcc--ccceeEEEEEEEec------------C--C----cEEEEE
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DPTSKV--TVGASFLSQTIALQ------------D--S----TTVKFE 86 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~~------------~--~----~~~~~~ 86 (200)
++..++|+++|+.++|||||+++|.+... .....+ |....+....+... + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 35678999999999999999999996432 222222 33333333332210 1 1 126899
Q ss_pred EEeCCChhhhhhcccccccCccEEEEEEeCCCH----HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHH
Q 028986 87 IWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQ 160 (200)
Q Consensus 87 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~ 160 (200)
+||+||++.+...+...+..+|++|+|+|++++ .+.+.+. .+.... ..|+++++||+|+..... ...+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988888888899999999999953 4444333 233221 247999999999976543 2345
Q ss_pred HHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 161 DGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 161 ~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
++.+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 55666654 3678999999999999999999998664
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=146.47 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=106.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQDSTTVKFEIWDTAG-----------QER 95 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~ 95 (200)
+....++|+|+|++|+|||||+|+|++..+.....+ +.+.......+...+ ..+.+||||| ...
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE---TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT---EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC---ceEEEEECCCccCCCCCHHHHHHH
Confidence 446689999999999999999999999877544433 223333333333322 4789999999 334
Q ss_pred hhhcccccccCccEEEEEEeCCCHHh--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC------HHHHHHHHH
Q 028986 96 YAALAPLYYRGAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP------AQDGIEYAE 167 (200)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~ 167 (200)
+...+..+++.+|++|+|+|++.... ...+..+...+... ...|+++|+||+|+.....+. .+.+..+++
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 45555566778999999999875422 22223332222221 235899999999986654332 245677888
Q ss_pred HcCCeEEEecCCCC-----CCHHHHHHHHHHhhcc
Q 028986 168 KNGMFFIETSAKTA-----DNINQLFEVLITCTSS 197 (200)
Q Consensus 168 ~~~~~~~~~S~~~~-----~~i~~~~~~i~~~~~~ 197 (200)
.++..++.++...+ .++.++++.+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888888877754 6899999988887754
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=8.2e-23 Score=163.14 Aligned_cols=152 Identities=21% Similarity=0.275 Sum_probs=108.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-hhhh--------cccc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-RYAA--------LAPL 102 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~ 102 (200)
.++|+|+|.+|+|||||+|+|.+..+. ....+..+.+.....+.+. + ..+.+|||||.. ++.. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~-g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-G--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET-T--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC-C--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 479999999999999999999997542 2222333333333444443 2 579999999986 4432 1234
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
+++.+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+... ...+++.+++. .+++++++||+++.
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGE 390 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence 678899999999999887665533 22332 36789999999999653 33444444432 44689999999999
Q ss_pred CHHHHHHHHHHhhc
Q 028986 183 NINQLFEVLITCTS 196 (200)
Q Consensus 183 ~i~~~~~~i~~~~~ 196 (200)
|+++++++|.+.+.
T Consensus 391 Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 391 GLEKLEESIYRETQ 404 (482)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998754
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=4.9e-22 Score=159.23 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=109.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCC----C---CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQ----F---DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL 102 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 102 (200)
....++|+++|+.++|||||+++|.+.. . .....+..+.+.....+.+.+ ..+.+|||||++++...+..
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN---YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT---EEEEECCCSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC---EEEEEEECCChHHHHHHHHH
Confidence 3568999999999999999999999865 1 111111122222222233322 68999999999999888888
Q ss_pred cccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHc----CCeE
Q 028986 103 YYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKN----GMFF 173 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~ 173 (200)
.+..+|++|+|+|+++ +.+.+.+ ..+.. .++|+++|+||+|+..... ...+++.+++... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999987 4444333 22333 2677899999999865321 1123444555544 5789
Q ss_pred EEecCCCCCCHHHHHHHHHHhhc
Q 028986 174 IETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+++||++|.|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998763
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=5.4e-22 Score=150.30 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=106.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAP 101 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~ 101 (200)
+..+|+|+|++|+|||||+|+|++..+..... +..........+.. . ..++.+|||||.. .+.....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~-~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--G-AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--T-TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--C-CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 44579999999999999999999976532211 11111111111111 1 2689999999986 2344556
Q ss_pred ccccCccEEEEEEeCCCHHhHHHHHHHH-HHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986 102 LYYRGAAVAVVVYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAK 179 (200)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~ 179 (200)
.+++.+|++++|+|+++ +.....|+ ..+. ..+.|+++++||+|+........+.+.++...++. .++++|++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 78899999999999976 22222233 2232 34789999999999865322223444555555665 69999999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 028986 180 TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~ 197 (200)
++.|++++++.|.+.+.+
T Consensus 158 ~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 999999999999987653
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=1.6e-21 Score=158.90 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=114.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCC-----C----------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT-----S----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
++..+|+|+|+.++|||||+++|+... .... . ..+.........+...++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999998621 1100 0 0011111111112222455689999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC--
Q 028986 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-- 171 (200)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (200)
.++...+...+..+|++|+|+|++++.+.+....|..... .++|+++|+||+|+.... ..+...++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888889999999999999999877777666655442 378999999999986543 23344555555666
Q ss_pred -eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 172 -FFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 172 -~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.++++||++|.|+++++++|++.+..
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 48999999999999999999988754
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=9.9e-22 Score=154.92 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCC---CCCcc--ccceeEEEEEEEec------------C--C----cEEEE
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKV--TVGASFLSQTIALQ------------D--S----TTVKF 85 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~--~~~~~~~~~~~~~~------------~--~----~~~~~ 85 (200)
.++..++|+++|+.++|||||+++|++.... ....+ |....+....+... . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3467789999999999999999999964322 12122 33333333332210 0 1 12689
Q ss_pred EEEeCCChhhhhhcccccccCccEEEEEEeCCCH----HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCH
Q 028986 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPA 159 (200)
Q Consensus 86 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~ 159 (200)
.+||+||++.+.......+..+|++|+|+|+++. .+.+.+. .+.... ..|+++++||+|+..... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999888878888899999999999953 3444333 223221 247999999999865432 122
Q ss_pred HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 160 QDGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+++.+++.. .+++++++||+++.|+++++++|.+.+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 344445443 3678999999999999999999998664
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=5.5e-22 Score=161.83 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=111.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCC--CCC-----CCc------cccceeEE--EEEEEec--CCcEEEEEEEeCCChh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----TSK------VTVGASFL--SQTIALQ--DSTTVKFEIWDTAGQE 94 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----~~~------~~~~~~~~--~~~~~~~--~~~~~~~~l~D~~g~~ 94 (200)
+..||+|+|+.++|||||+++|+... ... ... ...+.+.. ...+.+. ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45689999999999999999998632 110 000 01111211 1122222 4556899999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe--
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-- 172 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 172 (200)
++...+..++..+|++|+|+|++++.+.+....|..... .++|+++|+||+|+.... ..+...++...+++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999889999999999999999998766666666655543 368999999999997643 233445566666663
Q ss_pred -EEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 173 -FIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 173 -~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
++++||++|.|+++++++|.+.+..
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCC
Confidence 8999999999999999999988754
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=1.9e-21 Score=150.52 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=107.7
Q ss_pred eee-EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhcccc
Q 028986 33 RVK-LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAPL 102 (200)
Q Consensus 33 ~~~-i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~ 102 (200)
.++ |+|+|++|+|||||+|+|.+........+..+.+.....+.+.+ ..+.+|||+|. +.+...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g---~~v~l~DT~G~i~~lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN---RKIMLVDTVGFIRGIPPQIVDAFFVTLS- 253 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT---EEEEEEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC---EEEEEEeCCCchhcCCHHHHHHHHHHHH-
Confidence 344 99999999999999999999765322222222233344455533 46899999995 22333333
Q ss_pred cccCccEEEEEEeCCCHH--hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHc---CCeEEEe
Q 028986 103 YYRGAAVAVVVYDITSPD--SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKN---GMFFIET 176 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 176 (200)
.+..+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+...... ..+.+..++..+ +.+++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999999876 5566666666666655567899999999998653310 011222333444 3368999
Q ss_pred cCCCCCCHHHHHHHHHHhhcc
Q 028986 177 SAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 177 S~~~~~~i~~~~~~i~~~~~~ 197 (200)
|++++.|+++++++|.+.+..
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999887654
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=5.5e-22 Score=157.64 Aligned_cols=151 Identities=20% Similarity=0.223 Sum_probs=100.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALAPLY 103 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~ 103 (200)
.+|+|+|.+|||||||+|+|++..... ...+..+.+.....+...+ ..+.+|||||.+. +...+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG---KTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT---EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC---eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 379999999999999999999876431 2223333333344444433 4689999999653 34556678
Q ss_pred ccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH-HHHHHHcCC-eEEEecCC
Q 028986 104 YRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG-IEYAEKNGM-FFIETSAK 179 (200)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~ 179 (200)
++.+|++++|+|+.++.+.. .+..|+ +. .++|+++|+||+|+... . ..+. .+++ .+++ .++++||+
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFL---RK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHH---HH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 89999999999998764432 223332 22 26789999999997431 0 1222 3333 4566 68999999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 028986 180 TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ~~~~i~~~~~~i~~~~~~ 197 (200)
+|.|+.+++++|.+.+.+
T Consensus 149 ~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999988753
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=9.6e-23 Score=162.07 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------ccc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------APL 102 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 102 (200)
..++|+|+|++|+|||||+|+|++..+.. ...+..+.+.....+.+. + ..+.+|||||..+.... ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-G--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-T--EEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-C--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 56789999999999999999999864322 122222222222233332 2 57899999997654433 233
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 182 (200)
++..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ...++. ...+++++|++++.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCC
Confidence 6788999999999998755544 44544443 26899999999997654432 111111 35679999999999
Q ss_pred CHHHHHHHHHHhhccc
Q 028986 183 NINQLFEVLITCTSSY 198 (200)
Q Consensus 183 ~i~~~~~~i~~~~~~~ 198 (200)
|+++++++|.+.+...
T Consensus 370 Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 370 GIDSLETAILEIVQTG 385 (462)
T ss_dssp SHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999987643
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=6e-22 Score=147.25 Aligned_cols=164 Identities=17% Similarity=0.137 Sum_probs=102.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-------- 98 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------- 98 (200)
+....++|+|+|++|||||||+++|++..... ...++ .+.......+... + ..+.+|||||+.....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-N--REIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-T--EEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-C--CEEEEEECcCCCCCCCCHHHHHHH
Confidence 34567899999999999999999999876332 22222 2222222233332 2 5799999999754322
Q ss_pred ---cccccccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEe-CCCCCCCCcCCH-------HHHHHHH
Q 028986 99 ---LAPLYYRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGN-KADLHEKREVPA-------QDGIEYA 166 (200)
Q Consensus 99 ---~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~ 166 (200)
....+++.+|++++|+|++.... ...+..++..+... ....|+++|+| |+|+... .... +++..++
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHH
Confidence 22236788999999999986221 12222333333211 11345666666 9998743 2111 2234455
Q ss_pred HHcCCe---E--EEecCCCCCCHHHHHHHHHHhhcc
Q 028986 167 EKNGMF---F--IETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 167 ~~~~~~---~--~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
..++.. + +++||+++.|++++|++|.+.+.+
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 555543 2 789999999999999999998765
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=8.8e-22 Score=145.25 Aligned_cols=165 Identities=13% Similarity=0.080 Sum_probs=102.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcccccee--EEEEEEEecCCcEEEEEEEeCCCh--------hhhhhc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGAS--FLSQTIALQDSTTVKFEIWDTAGQ--------ERYAAL 99 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~ 99 (200)
....++|+++|.+|+|||||+|+|++.........+.+.+ ......... + ..+.+|||||. +.+...
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD-K--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET-T--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC-C--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3568999999999999999999999987654333222222 112222222 2 57999999995 222222
Q ss_pred cccc----ccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc------CCHHHHHHHHHH
Q 028986 100 APLY----YRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE------VPAQDGIEYAEK 168 (200)
Q Consensus 100 ~~~~----~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~------~~~~~~~~~~~~ 168 (200)
...+ .+.+|++|+|+|++.... ...+..++..+......+.|+++++||.|+..... ...+.+..+...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 2222 388999999999985311 12222333333222233689999999999865321 011345677777
Q ss_pred cCCeEEEecCCC-----CCCHHHHHHHHHHhhcc
Q 028986 169 NGMFFIETSAKT-----ADNINQLFEVLITCTSS 197 (200)
Q Consensus 169 ~~~~~~~~S~~~-----~~~i~~~~~~i~~~~~~ 197 (200)
++..++.++... +.++.++++.|.+.+.+
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 887777776655 57999999999888875
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=3.5e-21 Score=152.75 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=102.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCCccccceeEEEEEEEe
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIAL 77 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 77 (200)
+.+..++|+++|++++|||||+++|+..... .......+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 4467789999999999999999999653210 001112222222222322
Q ss_pred cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---HH---HHHHHHHHHHHcCCCCCe-EEEEEeCCC
Q 028986 78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---FN---KAQYWVKELQKHGSPDIV-MALVGNKAD 150 (200)
Q Consensus 78 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D 150 (200)
. ...+.+|||||++++...+...+..+|++|+|+|+++... ++ .....+..+.. .++| +++++||+|
T Consensus 93 ~---~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D 166 (439)
T 3j2k_7 93 E---KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD 166 (439)
T ss_pred C---CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence 2 2589999999999999999999999999999999998632 11 22222222322 3566 899999999
Q ss_pred CCCCC--c----CCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 028986 151 LHEKR--E----VPAQDGIEYAEKNG------MFFIETSAKTADNINQLFE 189 (200)
Q Consensus 151 ~~~~~--~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~ 189 (200)
+.... + ...++...++..++ ++++++||++|.|+.++.+
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 85321 1 11233334444443 5799999999999998554
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=2.1e-22 Score=150.79 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=91.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC--------ccccceeEEEEEEEecCCcEEEEEEEeCCChh-------
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE------- 94 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------- 94 (200)
+...++|+|+|.+|+|||||+|+|++....... .++.+.+.....+.. ++..+.+.+|||||..
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchh
Confidence 356799999999999999999999886543332 333444443333322 3444789999999962
Q ss_pred hhhhcc-------cccc-------------cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 95 RYAALA-------PLYY-------------RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 95 ~~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
.+.... ..++ ..+|+++++++.+.......-..++..+.. ++|+++|+||+|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 122211 1111 237899999987653212222334444432 7899999999998643
Q ss_pred CcCC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 155 REVP--AQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
.+.. .+.+.+.+...+++++++|++++.++.+++++|.+.+
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3221 1234455556789999999999999999999998765
No 150
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=1.6e-21 Score=151.75 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=94.0
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------HHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~ 151 (200)
+.+++||++|++.++..|..++++++++|+|||+++ ..+++....|+..+.... ..++|+++|+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 789999999999999999999999999999999999 889999999999887653 568999999999998
Q ss_pred CCCCc---C---------------------------CHHHHHHHH-----HH--------cCCeEEEecCCCCCCHHHHH
Q 028986 152 HEKRE---V---------------------------PAQDGIEYA-----EK--------NGMFFIETSAKTADNINQLF 188 (200)
Q Consensus 152 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~~~~i~~~~ 188 (200)
...+. . ..+++..++ .. ..+.++++||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 43221 1 134555553 22 24567899999999999999
Q ss_pred HHHHHhhcc
Q 028986 189 EVLITCTSS 197 (200)
Q Consensus 189 ~~i~~~~~~ 197 (200)
.++.+.+.+
T Consensus 377 ~~v~~~I~~ 385 (402)
T 1azs_C 377 NDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.4e-23 Score=168.86 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=111.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 111 (200)
+.++|+|+|++++|||||+++|.+..+.....++.+.+.....+...++ ..+.+|||||++.+...+..++..+|++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 4568999999999999999999976543333333333333333333233 36899999999999999999999999999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHH---HHHc--CCeEEEecCCCCCCHH
Q 028986 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEY---AEKN--GMFFIETSAKTADNIN 185 (200)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~S~~~~~~i~ 185 (200)
+|+|+++........ ++..+. ..++|+++++||+|+...... ...+...+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999864443333 223333 347899999999998653221 11222221 1111 3479999999999999
Q ss_pred HHHHHHHHhhc
Q 028986 186 QLFEVLITCTS 196 (200)
Q Consensus 186 ~~~~~i~~~~~ 196 (200)
+++++|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999998764
No 152
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=2.3e-21 Score=147.32 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=95.5
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------CHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~ 151 (200)
+.+++||++|++.++..|.+++++++++|+|+|++ +..+++....|+..+.... ..++|+++++||+|+
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 78999999999999999999999999999999665 5667877777777775532 467999999999998
Q ss_pred CCCC----------------cCCHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 152 HEKR----------------EVPAQDGIEYAE----------KNGMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 152 ~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
...+ ....+++.+++. ..++.++++||+++.||+.+|..+.+.+.+.
T Consensus 247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 5432 456777777743 3466789999999999999999999887653
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=6.4e-22 Score=157.13 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=97.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhccccccc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPLYYR 105 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~ 105 (200)
.+|+|+|.+|||||||+|+|++...... ..+.+.+............ ..+.+|||||.+ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCS-SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECC-ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998765322 2223332222222222222 479999999975 56667778889
Q ss_pred CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 028986 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI 184 (200)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 184 (200)
.+|++|+|+|+.++.+... ..+...+. ..++|+++|+||+|+...... ..++. .++. .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d-~~~~~~l~---~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH-HHHHHHHT---TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHH---HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999998755433 22223333 347899999999998653211 11222 3454 6899999999999
Q ss_pred HHHHHHHHHhhcc
Q 028986 185 NQLFEVLITCTSS 197 (200)
Q Consensus 185 ~~~~~~i~~~~~~ 197 (200)
.+++++|.+.+.+
T Consensus 153 ~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 153 GDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHhcCc
Confidence 9999999998863
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=8.9e-21 Score=150.69 Aligned_cols=161 Identities=22% Similarity=0.200 Sum_probs=104.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc---------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA--------- 100 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------- 100 (200)
+..++|+|+|++|||||||+|+|++..... ...+..+.+.....+.+. + ..+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-G--RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-T--EEEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-C--EEEEEEECCCCccccccchhhHHHHHH
Confidence 456899999999999999999999975421 111122222222334443 3 368899999974332211
Q ss_pred ---cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHH-HHH----cCCe
Q 028986 101 ---PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY-AEK----NGMF 172 (200)
Q Consensus 101 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~ 172 (200)
..++..+|++++++|++++.+.... .+...+.. .+.|+++|+||+|+.+......++..+. ... ..++
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence 2245678999999999876554432 23333332 3789999999999976544333333322 222 3578
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 173 FIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 173 ~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
++++||++|.|++++|+.+.+.+.+.
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999877653
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-21 Score=138.98 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=87.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 106 (200)
....++|+|+|++|||||||+++|.+..+... ..++.+.+ + ....+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~---~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y---DGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C---CCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e---cCCeEEEEECCCCchHHHHHHHHHHh
Confidence 35678999999999999999999999765431 11111111 1 22568999999998877777766665
Q ss_pred ----ccEEEEEEeCC-CHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCc
Q 028986 107 ----AAVAVVVYDIT-SPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 107 ----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~ 156 (200)
+|++++|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.....
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 888998888888776543 345899999999999976544
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=2.1e-21 Score=155.91 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=97.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCCccccceeEEEEEEEec
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIALQ 78 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 78 (200)
.+..+||+++|++++|||||+++|++.... .........+.....+..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 108 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 108 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-
Confidence 356799999999999999999999764110 000011111111222222
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHH------HHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN------KAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
. ...+.+|||||++++...+..++..+|++|+|+|++++.+.. .....+..+... ...|+++|+||+|+.
T Consensus 109 -~-~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 -H-RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV 184 (483)
T ss_dssp -S-SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGG
T ss_pred -C-CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcc
Confidence 2 258999999999999999999999999999999999875432 222222223322 124699999999987
Q ss_pred CCCcCCHHHHHH----HHHHc-----CCeEEEecCCCCCCHHH
Q 028986 153 EKREVPAQDGIE----YAEKN-----GMFFIETSAKTADNINQ 186 (200)
Q Consensus 153 ~~~~~~~~~~~~----~~~~~-----~~~~~~~S~~~~~~i~~ 186 (200)
...+...+++.+ ++... +++++++||++|.|+.+
T Consensus 185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 643333333333 33322 46799999999999874
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=5.5e-21 Score=150.01 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=108.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCC-------CCCC-------CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPT-------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 97 (200)
..++|+++|+.++|||||+++|++.. +... .....+.+.......+... ...+.+|||||++++.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-ARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-SCEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-CeEEEEEECCChHHHH
Confidence 46899999999999999999998731 1100 0001122221122223222 2579999999999998
Q ss_pred hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC---
Q 028986 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG--- 170 (200)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 170 (200)
..+..++..+|++|+|+|+++....+... ++..+.. .++| +++++||+|+....+. ..+++.+++..++
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888899999999999999854333222 3333433 2677 7899999998643211 1234556666655
Q ss_pred --CeEEEecCCCCCC----------HHHHHHHHHHhhc
Q 028986 171 --MFFIETSAKTADN----------INQLFEVLITCTS 196 (200)
Q Consensus 171 --~~~~~~S~~~~~~----------i~~~~~~i~~~~~ 196 (200)
++++++||+++.| +.++++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8899999988664
No 158
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=2.2e-20 Score=152.47 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=106.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----CccccceeEEEEEE------EecC-----CcEEEEEEEeCCChhhh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----SKVTVGASFLSQTI------ALQD-----STTVKFEIWDTAGQERY 96 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~------~~~~-----~~~~~~~l~D~~g~~~~ 96 (200)
+.++|+|+|++++|||||+++|.+..+... ..++.+..+..... .... .....+.+|||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 457899999999999999999987543221 11222222211100 0000 11125899999999999
Q ss_pred hhcccccccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-------------H-
Q 028986 97 AALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-------------A- 159 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~- 159 (200)
...+..++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 555554432 222 378999999999986432110 0
Q ss_pred --H-------HHHHHHHHc---------------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 160 --Q-------DGIEYAEKN---------------GMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 160 --~-------~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+ +......+. .++++++||++|.|+++++++|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111111222 237999999999999999999998765
No 159
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=1e-21 Score=151.15 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=92.4
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------CHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCC
Q 028986 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKHG-SPDIVMALVGNKA 149 (200)
Q Consensus 81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~ 149 (200)
..+.+++||++|++.++..|..++++++++|+|||++ +..+++....|+..+.... ..++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 7788999988888876543 4679999999999
Q ss_pred CCCCCCc--C-------------------CHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHH
Q 028986 150 DLHEKRE--V-------------------PAQDGIEYAEK----------------NGMFFIETSAKTADNINQLFEVLI 192 (200)
Q Consensus 150 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~~~~~i~ 192 (200)
|+...+. . ..+++.+++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 13555666432 123468999999999999999998
Q ss_pred Hhhcc
Q 028986 193 TCTSS 197 (200)
Q Consensus 193 ~~~~~ 197 (200)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=2.6e-21 Score=152.27 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=110.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcC--------CCCCCC-------ccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--------QFDPTS-------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~--------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
....++|+++|++++|||||+++|++. .+.... ....+.+.......+.... ..+.+|||||++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK-RHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-CEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC-eEEEEEECCChH
Confidence 356789999999999999999999873 111100 0011222212222232222 578999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG 170 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~ 170 (200)
++...+..++..+|++|+|+|+++... .....++..+... ++| +++++||+|+....+. ..+++.+++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888888999999999999988643 3334555555543 677 8899999998743211 1234555666654
Q ss_pred -----CeEEEecCCCCCC------------------HHHHHHHHHHhhc
Q 028986 171 -----MFFIETSAKTADN------------------INQLFEVLITCTS 196 (200)
Q Consensus 171 -----~~~~~~S~~~~~~------------------i~~~~~~i~~~~~ 196 (200)
++++++||++|.| +.++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999987 7888888877654
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=1e-20 Score=152.69 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=81.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCC---------------CC-------ccccceeEEEEEEEecCCcEEEEEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP---------------TS-------KVTVGASFLSQTIALQDSTTVKFEIW 88 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (200)
.+..+|+|+|++++|||||+++|+...... .. ............+... .+.+.+|
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---~~~i~li 87 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK---DYLINLL 87 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET---TEEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC---CEEEEEE
Confidence 456799999999999999999997211000 00 0011111112222222 2689999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
||||+.++...+..+++.+|++|+|+|+++..+......| ..+. ..++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence 9999999988889999999999999999987655554444 3333 34789999999999864
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=7.1e-22 Score=156.74 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=101.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCCC-----------------------------ccccceeEEEEEEEecC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTS-----------------------------KVTVGASFLSQTIALQD 79 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 79 (200)
+..++|+++|+.++|||||+++|+.. .+.... ....+.+.....+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 45789999999999999999999864 222110 001111111112222
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc----CCCC-CeEEEEEeCCCCCCC
Q 028986 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH----GSPD-IVMALVGNKADLHEK 154 (200)
Q Consensus 80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~p~iiv~nK~D~~~~ 154 (200)
....+.+|||||++++...+..++..+|++|+|+|+++ .+++....|.....++ ...+ .|+++++||+|+...
T Consensus 82 -~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 -KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp -SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred -CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 22579999999999999888889999999999999998 5566433222221111 1123 358999999998652
Q ss_pred C------cCCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHH
Q 028986 155 R------EVPAQDGIEYAEKNG-----MFFIETSAKTADNINQLF 188 (200)
Q Consensus 155 ~------~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~ 188 (200)
. +...+++.+++..++ ++++++||++|.|+.+++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1 111345556666655 679999999999997543
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=2.2e-21 Score=154.90 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=98.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC--------hhhhhhcccc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG--------QERYAALAPL 102 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~ 102 (200)
....+|+|+|.+|||||||+|+|++..+... ..+.+.+............ ..+.+||||| ++.+...+..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCS-SCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECC-ceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 4466899999999999999999998755322 2223333322223332222 5799999999 7777788888
Q ss_pred cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTA 181 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 181 (200)
+++.+|++|+|+|..+..+.. ..++..+.+ ..++|+++|+||+|+..... ...++. .++. .++++||++|
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence 999999999999988753222 223322222 35789999999999854321 111121 1232 4689999999
Q ss_pred CCHHHHHHHHHHhhc
Q 028986 182 DNINQLFEVLITCTS 196 (200)
Q Consensus 182 ~~i~~~~~~i~~~~~ 196 (200)
.|+.++++++.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTHHHHHHHHHTTGG
T ss_pred cchHHHHHHHHhhcc
Confidence 999999999988765
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.6e-22 Score=154.10 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=86.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-Cc--------cccceeEEEEEEEec-CCcEEEEEEEeCCCh------
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-SK--------VTVGASFLSQTIALQ-DSTTVKFEIWDTAGQ------ 93 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~------ 93 (200)
....++|+|+|++|+|||||+++|++...... +. ++.+... ....+. ++..+.+.+|||||.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~--~~~~~~~~~~~~~l~i~DTpG~gd~~~~ 111 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGYGDAINC 111 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEE--EEEC----CEEEEEEEEC----------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEE--EEEEeecCCcccceEEEEeccccccCcc
Confidence 35678999999999999999999877543221 11 2222222 222222 334468999999998
Q ss_pred -hhhhhccc-------ccccC-------------ccEEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 94 -ERYAALAP-------LYYRG-------------AAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 94 -~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
+.+..++. .++.. +|+++|+++.. ..++..+. .|+..+ ..++|+|+|+||+|+
T Consensus 112 ~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl 186 (361)
T 2qag_A 112 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADT 186 (361)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCC
Confidence 44544443 33332 23455555542 23343332 333333 357899999999998
Q ss_pred CCCCcCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 152 HEKREVPA--QDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
....++.. +++.+++..++++++++|++++.+ ++.|.++.+.+.+.
T Consensus 187 ~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 187 LTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 76544333 455666667789999999999998 88888887776554
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=4.1e-20 Score=146.62 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=102.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCC---CCC---------Ccccc---------------------ceeEEEEEE
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DPT---------SKVTV---------------------GASFLSQTI 75 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~---------~~~~~---------------------~~~~~~~~~ 75 (200)
..+..++|+++|+.++|||||+++|++... ... ...+. ..+.....+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 345678999999999999999999987531 100 00110 001111111
Q ss_pred EecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 76 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 76 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
. .....+.+|||||++++...+..++..+|++|+|+|++++.. .....++..+.... ..|+++|+||+|+....
T Consensus 100 ~---~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 100 S---TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFD 173 (434)
T ss_dssp E---CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSC
T ss_pred e---cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCccc
Confidence 1 122679999999999998888888999999999999998642 22333444444331 23699999999997532
Q ss_pred cC----CHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 028986 156 EV----PAQDGIEYAEKNG-----MFFIETSAKTADNINQL 187 (200)
Q Consensus 156 ~~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 187 (200)
+. ..++..+++..++ ++++++||++|.|+.++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11 1234555666666 67999999999999874
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=5.5e-21 Score=148.35 Aligned_cols=145 Identities=6% Similarity=0.025 Sum_probs=103.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 114 (200)
+|+++|++++|||||+++|+. ...+....+ ..+...+ .++.+|||||++++.......+..+|++|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~--~~~~~~~---~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv 91 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM--YNNDKEG---RNMVFVDAHSYPKTLKSLITALNISDIAVLCI 91 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSSEE--EEECSSS---SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE--EEEecCC---eEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence 899999999999999999981 122222222 2222222 46999999999998877777889999999999
Q ss_pred eCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEe-CCCCCCCCcCC--HHHHHHHHHHc---CCeEEE--ecCCC---CC
Q 028986 115 DITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGN-KADLHEKREVP--AQDGIEYAEKN---GMFFIE--TSAKT---AD 182 (200)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~S~~~---~~ 182 (200)
| .. ..+.....++..+... ++|. ++++| |+|+ ...... .+++.+++... .+++++ +||++ +.
T Consensus 92 d-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 92 P-PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp C-TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred c-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 9 53 3344555566555544 4566 88899 9998 432211 13444444443 368999 99999 99
Q ss_pred CHHHHHHHHHHhhc
Q 028986 183 NINQLFEVLITCTS 196 (200)
Q Consensus 183 ~i~~~~~~i~~~~~ 196 (200)
|++++++.|.+.+.
T Consensus 166 gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 166 GVDELKARINEVAE 179 (370)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999988764
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7.6e-21 Score=156.00 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=100.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-------------------------------cccceeEEEEEEEec
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-------------------------------VTVGASFLSQTIALQ 78 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 78 (200)
.+..++|+++|++++|||||+++|++........ +....+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3567899999999999999999999753211110 111111112222222
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---H---HHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
..++.+|||||++.+...+..++..+|++|+|+|++++.. + ......+..+... ...|+++|+||+|+.
T Consensus 244 ---~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 ---RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV 318 (611)
T ss_dssp ---SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTT
T ss_pred ---CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEeccccc
Confidence 2579999999999999999999999999999999987521 1 1112222222222 124599999999987
Q ss_pred CCCcCCHH----HHHHHHHHc-----CCeEEEecCCCCCCHHHH
Q 028986 153 EKREVPAQ----DGIEYAEKN-----GMFFIETSAKTADNINQL 187 (200)
Q Consensus 153 ~~~~~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 187 (200)
...+...+ ++..++... +++++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 63322222 233333333 458999999999999865
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=3.2e-20 Score=141.52 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=92.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------CHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL 151 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~ 151 (200)
+.+++||++|++.++..|..++++++++|+|+|++ +..+++....|+..+.... ..++|+++++||+|+
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL 240 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchh
Confidence 68999999999999999999999999999999998 6778888888887776543 468999999999998
Q ss_pred CCCC---------------cCCHHHHHHHHHH---------------------------cCCeEEEecCCCCCCHHHHHH
Q 028986 152 HEKR---------------EVPAQDGIEYAEK---------------------------NGMFFIETSAKTADNINQLFE 189 (200)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~i~~~~~ 189 (200)
...+ ....+++.+++.. ..+.++++||+++.+|+.+|.
T Consensus 241 ~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~ 320 (340)
T 4fid_A 241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp HHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHH
T ss_pred hhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHH
Confidence 4311 1234555554432 236789999999999999999
Q ss_pred HHHHhhcc
Q 028986 190 VLITCTSS 197 (200)
Q Consensus 190 ~i~~~~~~ 197 (200)
.+.+.+.+
T Consensus 321 ~v~~~Il~ 328 (340)
T 4fid_A 321 LAVDVIMK 328 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=5.9e-21 Score=144.52 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=101.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc------ccc-----------------c---eeE-------------
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK------VTV-----------------G---ASF------------- 70 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~------~~~-----------------~---~~~------------- 70 (200)
....++|+|+|.+|+|||||+|+|++..+.+... ++. + .+.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 3456799999999999999999999987643211 110 0 000
Q ss_pred ----------EEEEEEecCCcEEEEEEEeCCChh-------------hhhhcccccccCccEEE-EEEeCCCHHhHHHHH
Q 028986 71 ----------LSQTIALQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGAAVAV-VVYDITSPDSFNKAQ 126 (200)
Q Consensus 71 ----------~~~~~~~~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 126 (200)
....+.+.......+.+|||||.. .+...+..+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000000002479999999953 34556667788888666 799998754433333
Q ss_pred HHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH--cC-CeEEEecCCCCCCHHHHHHHHHHh
Q 028986 127 YWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK--NG-MFFIETSAKTADNINQLFEVLITC 194 (200)
Q Consensus 127 ~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~i~~~~~~i~~~ 194 (200)
.++..+. ..+.|+++|+||+|+........+.+...... .+ .+++++||+++.|+++++++|.+.
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 3444332 45789999999999976543222222210001 12 367899999999999999998764
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=5.3e-21 Score=152.84 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=89.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCC----------------------C-------ccccceeEEEEEEEecC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT----------------------S-------KVTVGASFLSQTIALQD 79 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~----------------------~-------~~~~~~~~~~~~~~~~~ 79 (200)
+..++|+++|+.++|||||+++|+... +... . ......+.....+...
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 567899999999999999999997521 1100 0 0001111111112221
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCC
Q 028986 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKR 155 (200)
Q Consensus 80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~ 155 (200)
...+.+|||||+++|...+...+..+|++|+|+|+++.. +|+....+...+......++| +++++||+|+....
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 268999999999999988888999999999999999863 232111222222222233666 99999999985421
Q ss_pred c------CCHHHHHHHHHHc-------CCeEEEecCCCCCCHHHHH
Q 028986 156 E------VPAQDGIEYAEKN-------GMFFIETSAKTADNINQLF 188 (200)
Q Consensus 156 ~------~~~~~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~ 188 (200)
. ...+++..++... +++++++|+++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1123455566555 4579999999999998754
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=7.4e-20 Score=156.35 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=109.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCC-------CCCC-------CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPT-------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
..+..++|+++|++++|||||+++|++.. +... ...+.+.+.....+.+... ...+.+|||||++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-~~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-TRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-SCEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-CEEEEEEECCChH
Confidence 34567899999999999999999998731 0000 0011122211111222222 2579999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG 170 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~ 170 (200)
++...+..++..+|++|+|+|++++... ....++..+... ++| +++++||+|+....+. ..+++.+++...+
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888889999999999999986322 223344444433 577 7899999999753221 1234556666655
Q ss_pred -----CeEEEecCCCC--------CCHHHHHHHHHHhhc
Q 028986 171 -----MFFIETSAKTA--------DNINQLFEVLITCTS 196 (200)
Q Consensus 171 -----~~~~~~S~~~~--------~~i~~~~~~i~~~~~ 196 (200)
++++++||++| .|+.++++.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 468999999887654
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=1.4e-21 Score=156.23 Aligned_cols=154 Identities=13% Similarity=0.184 Sum_probs=104.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 110 (200)
.+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+.. ++ ..+.+|||||++.+...+...+..+|++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~a 78 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-EN--GMITFLDTPGHAAFTSMRARGAQATDIV 78 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TS--SCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CC--EEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence 34678999999999999999999875433222221221111111222 22 3689999999999999999999999999
Q ss_pred EEEEeCCCH---HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC--cCCHH--HHHHHHHHc--CCeEEEecCCCC
Q 028986 111 VVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR--EVPAQ--DGIEYAEKN--GMFFIETSAKTA 181 (200)
Q Consensus 111 i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~S~~~~ 181 (200)
++|+|+++. .+.+.+ ..+. ..++|+++++||+|+.... .+..+ +...++..+ .++++++||++|
T Consensus 79 ILVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 79 VLVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EEEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 999999874 333322 2222 2368899999999996431 11110 000011222 268999999999
Q ss_pred CCHHHHHHHHHHh
Q 028986 182 DNINQLFEVLITC 194 (200)
Q Consensus 182 ~~i~~~~~~i~~~ 194 (200)
.|+++++++|...
T Consensus 152 ~gI~eLle~I~~~ 164 (501)
T 1zo1_I 152 TGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTHHHHTTTT
T ss_pred cCcchhhhhhhhh
Confidence 9999999998764
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.4e-19 Score=130.06 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=98.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhhhcc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYAALA 100 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 100 (200)
....+|+++|++|||||||+++|.+..+.....++.+.......+.+.+ .+.+||+||.. .+....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD----GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET----TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC----CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4557899999999999999999998764333334444443333333322 37899999963 222223
Q ss_pred cccc---cCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHHcC--C
Q 028986 101 PLYY---RGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNG--M 171 (200)
Q Consensus 101 ~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~ 171 (200)
..++ ..++++++++|++.+.+.. .+..|+ . ..+.|+++|+||+|+....+. ..+.+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---H---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3333 4689999999998764432 222232 2 236789999999997653211 1234444554443 4
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 172 FFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 172 ~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.++++|++++.++++++++|.+.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 68899999999999999999987754
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=2.5e-19 Score=149.13 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=107.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccce-eEE------EEEEEecCCcE--------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGA-SFL------SQTIALQDSTT-------------------- 82 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~-~~~------~~~~~~~~~~~-------------------- 82 (200)
...++|+|+|.+|+|||||+|+|++....+... ++... ... ..++.+.++..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 457899999999999999999999977544322 21100 000 00111101000
Q ss_pred ---------------------------EEEEEEeCCChhh---hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHH
Q 028986 83 ---------------------------VKFEIWDTAGQER---YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL 132 (200)
Q Consensus 83 ---------------------------~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 132 (200)
..+.+|||||... ....+..+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 2589999999765 3345567889999999999999887776666554444
Q ss_pred HHcCCCCCeEEEEEeCCCCCCCCcCCHH----------HHHHH----H-HH--------cCCeEEEecCC----------
Q 028986 133 QKHGSPDIVMALVGNKADLHEKREVPAQ----------DGIEY----A-EK--------NGMFFIETSAK---------- 179 (200)
Q Consensus 133 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~S~~---------- 179 (200)
. ..+.|+++|+||+|+........+ .+... . .. ...+++++|++
T Consensus 227 ~---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 K---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp T---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred H---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 3 236789999999998644311111 11111 1 11 12368999999
Q ss_pred ----CCCCHHHHHHHHHHhhcc
Q 028986 180 ----TADNINQLFEVLITCTSS 197 (200)
Q Consensus 180 ----~~~~i~~~~~~i~~~~~~ 197 (200)
++.|+++++++|.+.+.+
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=8.6e-19 Score=130.36 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=81.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc-----
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY----- 104 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~----- 104 (200)
...++|+++|.+|+|||||+++|++........ +..........+...+ ..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG---FTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT---EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC---eeEEEEECCCCCCcccchHHHHHHHHH
Confidence 467999999999999999999999977532222 1122222222233322 5899999999866544333333
Q ss_pred ----cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCCcC
Q 028986 105 ----RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHEKREV 157 (200)
Q Consensus 105 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~~~~~ 157 (200)
..+|++++|++++..........|+..+......+ .|+++|+||+|+......
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 26899999999876542223345666666543333 489999999998644333
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=1e-19 Score=145.11 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=99.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------C-----------ccccceeEEEEEEEecC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPT------------------S-----------KVTVGASFLSQTIALQD 79 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~------------------~-----------~~~~~~~~~~~~~~~~~ 79 (200)
+..++|+++|++++|||||+++|++. .+... + ......+.....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-- 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence 45789999999999999999999864 11110 0 001111111112222
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHH---HHHHHHHHHHHcCCCCCe-EEEEEeCCCCC
Q 028986 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFN---KAQYWVKELQKHGSPDIV-MALVGNKADLH 152 (200)
Q Consensus 80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 152 (200)
. ...+.+|||||++++...+..++..+|++|+|+|+++.. +|+ ....++..+.. .++| +++|+||+|+.
T Consensus 83 ~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 P-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp S-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred C-CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 2 268999999999999988888999999999999999763 221 22223333332 2454 89999999986
Q ss_pred CCCc----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 028986 153 EKRE----VPAQDGIEYAEKNG-----MFFIETSAKTADNINQ 186 (200)
Q Consensus 153 ~~~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 186 (200)
...+ ...+++..++..++ ++++++||++|.|+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 3211 11234445555554 6899999999999864
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.6e-18 Score=143.77 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=80.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc----------------ccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV----------------TVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
....+|+|+|+.|+|||||+++|++......... ..+..+......+... .+.+.+|||||+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEeCCCcc
Confidence 4456899999999999999999995332110000 0111221222222222 2789999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
++...+..+++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 988888889999999999999887643322 344444443 368899999999986
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=1e-19 Score=141.21 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=102.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEE-----------------------------------------
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS----------------------------------------- 72 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 72 (200)
.+|+|+|++|||||||+++|++..+.+............
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 389999999999999999999987644332211100000
Q ss_pred -----------EEEEecCCcEEEEEEEeCCChhhh-------------hhcccccccCccEEEEEEeCCCHHhHHHHHHH
Q 028986 73 -----------QTIALQDSTTVKFEIWDTAGQERY-------------AALAPLYYRGAAVAVVVYDITSPDSFNKAQYW 128 (200)
Q Consensus 73 -----------~~~~~~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 128 (200)
..+.+.......+.+|||||...+ ......++.++|++|+++|..+.+... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 001111111135899999996554 456677889999999999876533221 334
Q ss_pred HHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986 129 VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190 (200)
Q Consensus 129 ~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 190 (200)
+..+......+.|+++|+||+|+........+....+...++.+|+.++++.+.++++.+.+
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 55555555667899999999999766554444444444446778999999998887765544
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=2.2e-18 Score=135.11 Aligned_cols=159 Identities=18% Similarity=0.155 Sum_probs=105.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA 107 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 107 (200)
.|+|+|++|||||||+++|.+........+..........+...+. ..+.+||+||..+ ...+...+ +..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 5789999999999999999986421111111111111222333221 4689999999632 11122222 3568
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986 108 AVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (200)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 185 (200)
+.+++++|++ ...+..+..|...+.... ....|.++|+||+|+... ...+.+.+.+...+++++.+||+++.+++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 555666766666655442 125788999999998653 22334445555567899999999999999
Q ss_pred HHHHHHHHhhccc
Q 028986 186 QLFEVLITCTSSY 198 (200)
Q Consensus 186 ~~~~~i~~~~~~~ 198 (200)
+++++|.+.+.+.
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=7.5e-21 Score=155.61 Aligned_cols=160 Identities=22% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCCccccceeEEEEEEEec
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIALQ 78 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 78 (200)
.+..++|+|+|++++|||||+++|+..... ....+..+.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 456789999999999999999999642100 000111111111111111
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hH---HHHHHHHHHHHHcCCCCCe-EEEEEeCCCC
Q 028986 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SF---NKAQYWVKELQKHGSPDIV-MALVGNKADL 151 (200)
Q Consensus 79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~ 151 (200)
....+.||||||++++...+...+..+|++|+|+|++++. .+ ......+..+... ++| +|+|+||+|+
T Consensus 253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl 327 (592)
T 3mca_A 253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDL 327 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGG
T ss_pred --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccc
Confidence 2257899999999999988888999999999999998532 11 1112222223322 454 8999999998
Q ss_pred CCCCcCCH----HHHHHHH-HHcCC-----eEEEecCCCCCCHH--------------HHHHHHHHhh
Q 028986 152 HEKREVPA----QDGIEYA-EKNGM-----FFIETSAKTADNIN--------------QLFEVLITCT 195 (200)
Q Consensus 152 ~~~~~~~~----~~~~~~~-~~~~~-----~~~~~S~~~~~~i~--------------~~~~~i~~~~ 195 (200)
........ +++..++ ...++ +++++||++|.|+. .+++.|.+.+
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 65321111 2233333 33343 79999999999998 6777776543
No 181
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=1.2e-18 Score=132.77 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=69.7
Q ss_pred EEEEEEeCCChhh-------------hhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986 83 VKFEIWDTAGQER-------------YAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNK 148 (200)
Q Consensus 83 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK 148 (200)
..+.+|||||... +...+..++..+|++++|+|..+.. .......+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4699999999642 4556677889999999999974322 111111222222 2457899999999
Q ss_pred CCCCCCCcCCHHHHHHHHHHcCCeEEEecCC---C---CCCHHHHHHHHHHhhcc
Q 028986 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAK---T---ADNINQLFEVLITCTSS 197 (200)
Q Consensus 149 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---~---~~~i~~~~~~i~~~~~~ 197 (200)
+|+........+.+......++..++++++. + +.|+.++++.+.+.+.+
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9997654322222221111122456666554 4 68899999998877654
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=1.7e-19 Score=136.51 Aligned_cols=166 Identities=13% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcC-CCCCCCcc------ccceeEEEEEEEec-CCcEEEEEEEeCCCh-------
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRG-QFDPTSKV------TVGASFLSQTIALQ-DSTTVKFEIWDTAGQ------- 93 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~------- 93 (200)
.....++|+|+|++|+|||||+++|++. .++....+ +.........+... .+....+++||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456789999999999999999999875 33222100 01111111112221 233468999999997
Q ss_pred hhhhhccc-------cccc-------------CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 94 ERYAALAP-------LYYR-------------GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 94 ~~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
+.+..... .+++ .+++++|+.+++.. +++... ...+... ....++++|+||.|+..
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCC
Confidence 33333322 2221 23445666554321 222222 1233333 34678999999999875
Q ss_pred CCcC--CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986 154 KREV--PAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 154 ~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
..+. ..+++.+++..++++++++||+++ +++++|.++.+.+.+..
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 4332 235677888889999999999999 99999999998876543
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=1e-17 Score=139.41 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=81.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcC--CCC------C------------CCccccceeEEEEEEEecCCcEEEEEEEe
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--QFD------P------------TSKVTVGASFLSQTIALQDSTTVKFEIWD 89 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 89 (200)
.++..+|+|+|++++|||||+++|+.. .+. . ....+.... ...+... .+.+.+||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~---~~~i~liD 83 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK---DHRINIID 83 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET---TEEEEEEC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC---CeEEEEEE
Confidence 456789999999999999999999842 110 0 011111111 1122222 26899999
Q ss_pred CCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 90 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
|||+.++...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++|+||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99999888888899999999999999998776666555543 333 3788999999999864
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=8.3e-18 Score=125.55 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=78.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-------cc-
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-------PL- 102 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~- 102 (200)
...++|+++|.+|+|||||+|+|++..+..... ..+.+........... ...+.+|||||..++.... ..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 457999999999999999999999877532221 1111111111222112 2689999999975443211 11
Q ss_pred -cccCccEEEEEEeCCCHHhHH-HHHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCCc
Q 028986 103 -YYRGAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSPD--IVMALVGNKADLHEKRE 156 (200)
Q Consensus 103 -~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~~~~ 156 (200)
....+|+++||+|++... +. ....|+..+......+ .|+++|+||+|+.....
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 134699999999987532 32 2245666665543323 68999999999865543
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=4.8e-17 Score=131.51 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=77.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------c---------cccceeEEEEEEEecCCcEEEEEEEeC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------K---------VTVGASFLSQTIALQDSTTVKFEIWDT 90 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~l~D~ 90 (200)
.+..+|+|+|++++|||||+++|+........ . ...+.+.......+.. ....+.+|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 45789999999999999999999973211000 0 0001111000111111 2268999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
||+.++...+..++..+|++|+|+|+++..... ...++..+ ...++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 999988888888899999999999999763222 22232322 234789999999999864
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=133.61 Aligned_cols=160 Identities=14% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--------cccceeEEEEEEEec-CCcEEEEEEEeCCChhhhh--
Q 028986 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------VTVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYA-- 97 (200)
Q Consensus 29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~-- 97 (200)
.....++|+|+|++|+|||||++.|++..+..... .+.... .....+. .+....+++||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~--~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~ 104 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVE--QSKVLIKEGGVQLLLTIVDTPGFGDAVDN 104 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEE--EEECC------CEEEEEEECC--------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeee--eEEEEEecCCcccceeeeechhhhhhccc
Confidence 34567889999999999999999999876532211 111111 1111111 2223579999999965421
Q ss_pred -----h------------------cccccccCccE--EEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986 98 -----A------------------LAPLYYRGAAV--AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL 151 (200)
Q Consensus 98 -----~------------------~~~~~~~~~d~--~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~ 151 (200)
. +...++.++++ ++|+.+.+. .++... ..|+..+. .++|+|+|+||+|+
T Consensus 105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dl 179 (418)
T 2qag_C 105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADT 179 (418)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccC
Confidence 1 12334555554 444444331 223333 24555553 37899999999998
Q ss_pred CCCCcCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986 152 HEKREVPA--QDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
....++.. +.+.+.+..++++++++|++++.++.++|..|.+.+
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred ccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 76544433 566777778899999999999999999888777654
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=3.5e-18 Score=133.66 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=47.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEE-------------------ecCCcEEEEEEEeCCC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIA-------------------LQDSTTVKFEIWDTAG 92 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~~~~~~~~l~D~~g 92 (200)
++|+|+|.+|||||||+|+|++........+ |.........+. +.....+++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998762211111 111111111111 1111246899999999
Q ss_pred hhh----hhhccc---ccccCccEEEEEEeCCCH
Q 028986 93 QER----YAALAP---LYYRGAAVAVVVYDITSP 119 (200)
Q Consensus 93 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 119 (200)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 457889999999999874
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.73 E-value=1.8e-16 Score=132.10 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=81.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCC------C----------ccccceeEEEEEEEec----CCcEEEEEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT------S----------KVTVGASFLSQTIALQ----DSTTVKFEIW 88 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~------~----------~~~~~~~~~~~~~~~~----~~~~~~~~l~ 88 (200)
++..+|+|+|+.++|||||+++|+... +... . ............+.+. ++..+.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456799999999999999999997531 1100 0 0001111111122222 2334789999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
||||+.++...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence 9999999888888899999999999999987554444433 2232 33788999999999854
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=1.4e-18 Score=131.49 Aligned_cols=134 Identities=23% Similarity=0.218 Sum_probs=107.9
Q ss_pred HHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH-hHHHH
Q 028986 48 CIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-SFNKA 125 (200)
Q Consensus 48 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 125 (200)
+|+.+++.+.|. ..+.++.+..+. .. ..... .+.+||+ ++++..++..+++++|++|+|||++++. +++.+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~--~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG--SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS--SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC--eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 678888888877 778888885553 22 22222 6899999 8889999999999999999999999987 78888
Q ss_pred HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHH
Q 028986 126 QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 126 ~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
..|+..+.. .++|+++|+||+|+...+.+ ++..+++..++ ++++++||+++.|++++|.++..
T Consensus 105 ~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 999987765 37899999999998654332 44667777777 89999999999999999988754
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=1.5e-16 Score=132.42 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=80.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHc--CCCCCC---Cc-------------cccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPT---SK-------------VTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 92 (200)
.+..+|+|+|++|+|||||+++|+. ..+... .. ...........+... ...+.+|||||
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG 84 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE---GHRVNIIDTPG 84 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET---TEEEEEECCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC---CeeEEEEECcC
Confidence 4567999999999999999999985 221100 00 000011111112222 26899999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
+.++...+..+++.+|++|+|+|+++..+......|. .+.. .++|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 9888888888899999999999999876665555443 3433 3788999999999864
No 191
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.68 E-value=8.3e-19 Score=127.53 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=92.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEE------------EEEEEecCCcE-----------------
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL------------SQTIALQDSTT----------------- 82 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----------------- 82 (200)
..++|+|+|.+|||||||+++|+...+......+...++. ...+.+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4679999999999999999999986544433333333221 11111211110
Q ss_pred --EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHH
Q 028986 83 --VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ 160 (200)
Q Consensus 83 --~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 160 (200)
..+.++|++|.-... ..+-...+..+.++|......... .+... ...|.++|+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 135555555521000 011122345566676432111100 00011 13578999999998654334566
Q ss_pred HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 161 DGIEYAEKN--GMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 161 ~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
+..+++..+ +++++++||++|.|++++|++|.+.+.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 666776654 67899999999999999999999888654
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.68 E-value=6.5e-17 Score=117.11 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=94.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEE------------EEEEEecC-----------------CcE
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL------------SQTIALQD-----------------STT 82 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~-----------------~~~ 82 (200)
...+|+|+|.+|||||||+++|...............+.. ........ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4568999999999999999999875221110000000000 00011111 112
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 162 (200)
..+.+|||+|...... .+....+.+++|+|+...... ...+... .+.|+++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 4688999998511111 111246889999998765321 1111111 1467899999999854322345566
Q ss_pred HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986 163 IEYAEKN--GMFFIETSAKTADNINQLFEVLITCTSSY 198 (200)
Q Consensus 163 ~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~~~~ 198 (200)
.+.+... +++++++|+++|.|+++++++|.+.+.++
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666554 47899999999999999999999887654
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=8.1e-18 Score=130.15 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=94.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccc--eeE--------------------------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG--ASF-------------------------------------- 70 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~--~~~-------------------------------------- 70 (200)
...++|+|+|.++||||||+|+|++..+.+....... ...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 4457899999999999999999999876432211000 000
Q ss_pred ---------EEEEEEecCCcEEEEEEEeCCChh-------------hhhhcccccccCcc-EEEEEEeCCCHHhHHHHHH
Q 028986 71 ---------LSQTIALQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGAA-VAVVVYDITSPDSFNKAQY 127 (200)
Q Consensus 71 ---------~~~~~~~~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 127 (200)
....+.+.......+.+|||||.. .+......|+..++ ++++++|++....-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 000011111112469999999952 34455556665554 5566677664322111
Q ss_pred HHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHH--HHHcC-CeEEEecCCCCCCHHHHHHHHHH
Q 028986 128 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY--AEKNG-MFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 128 ~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
++..+......+.|+++|+||+|+........+..... ....+ .+++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22233344455789999999999975433222211100 00112 25788999999999999998876
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=2.9e-15 Score=115.22 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEEecCC--------------cEEEEEEEeCCChhhhh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQDS--------------TTVKFEIWDTAGQERYA 97 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~ 97 (200)
++|+|+|.+|+|||||+|+|++........+ |..... ..+.+.+. .+..+++||+||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999999653221111 222111 12223221 02479999999975432
Q ss_pred ----hcccc---cccCccEEEEEEeCCCH----------HhHHHHHHHHHH-----------------------------
Q 028986 98 ----ALAPL---YYRGAAVAVVVYDITSP----------DSFNKAQYWVKE----------------------------- 131 (200)
Q Consensus 98 ----~~~~~---~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~----------------------------- 131 (200)
.+... +++.+|++++|+|+++. +.++.+..+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 23333 46889999999999851 122222111111
Q ss_pred -----------HHH-------------------c-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986 132 -----------LQK-------------------H-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 132 -----------i~~-------------------~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 179 (200)
+.. . ....+|+++++|+.|..-......+.+.+++...+++++++||+
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 110 0 12348999999999964221233566677887789999999965
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=8.7e-17 Score=124.42 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=68.1
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 162 (200)
+.+.+|||||.... .......+|++++|+|....+....+.. .....|+++|+||+|+...... ....
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~-~~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEA-RLAA 239 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHH-HHHH
Confidence 57899999994321 1223478999999999876543322211 1124588999999998542211 1111
Q ss_pred HHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 163 IEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 163 ~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
.++... ++.+++++||++|.|+++++++|.+.+.+
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 122211 25789999999999999999999887754
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.63 E-value=5.5e-15 Score=119.99 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=78.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCC------------------C----CCCccccceeEEEEEEEecCCcEEEEEEEe
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF------------------D----PTSKVTVGASFLSQTIALQDSTTVKFEIWD 89 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 89 (200)
+.=||+|+|+.++|||||..+|+...- . ......+........+.+.+ ++++|+|
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlID 106 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---RVVNLLD 106 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT---EEEEEEC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC---EEEEEEe
Confidence 445899999999999999999963110 0 00001111111122223322 6899999
Q ss_pred CCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 90 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
|||+.+|.......++-+|++|+|+|+...-......-| ....+ .++|.++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 999999999999999999999999999987444443434 33333 3789999999999854
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=5.8e-16 Score=125.79 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=79.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC---CCCccccceeEEEEEE-------------------------------
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTI------------------------------- 75 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~------------------------------- 75 (200)
....++|+|+|.+|+|||||+|+|++..+. ....++. ........
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T-~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT-DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC-CSEEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc-ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 456789999999999999999999998763 1111111 11000000
Q ss_pred ------EecCCcEEEEEEEeCCChhh-----------hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCC
Q 028986 76 ------ALQDSTTVKFEIWDTAGQER-----------YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP 138 (200)
Q Consensus 76 ------~~~~~~~~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 138 (200)
.........+.+|||||... +...+..++..+|++|+|+|+++....+....|+..+. ..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GH 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TC
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hc
Confidence 00000002589999999753 34555667888999999999987544445555655554 33
Q ss_pred CCeEEEEEeCCCCCCC
Q 028986 139 DIVMALVGNKADLHEK 154 (200)
Q Consensus 139 ~~p~iiv~nK~D~~~~ 154 (200)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 6789999999998654
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=1.2e-15 Score=129.36 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=84.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCC------------CCC------CCccccceeEEEEEEEe-----------cCCc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ------------FDP------TSKVTVGASFLSQTIAL-----------QDST 81 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~------------~~~------~~~~~~~~~~~~~~~~~-----------~~~~ 81 (200)
++..||+|+|+.++|||||+++|+... +.. ....+.........+.. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456799999999999999999998641 100 00111111111112221 1344
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 82 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
.+.+.+|||||+.++...+..+++.+|++|+|+|+.++.+++....|.... ..++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 689999999999999989999999999999999999987776665554433 2368999999999985
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.1e-14 Score=110.10 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=97.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhcccc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPL 102 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~ 102 (200)
+....+|+|+|.|+||||||+|+|++........+..+.+.....+.+.+ .+++++|+||.-.- ....-.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~---~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG---AKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT---EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC---cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 34456899999999999999999999764433334444444444555544 57999999994211 111123
Q ss_pred cccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC--------CCcCCHHHHHHHHHHcCCeE
Q 028986 103 YYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHE--------KREVPAQDGIEYAEKNGMFF 173 (200)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~ 173 (200)
.++.+|++++|+|++++... +.+...+..+.. .....|.++++||.|... ......++...+...+.+..
T Consensus 146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~ 224 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINS 224 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCS
T ss_pred HHHhcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccC
Confidence 45779999999999987322 333333322211 123567788899999732 23345666666666665543
Q ss_pred EEecCCCCCCHHHHHHHH
Q 028986 174 IETSAKTADNINQLFEVL 191 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~i 191 (200)
-++-...+...+++.+.+
T Consensus 225 kpv~~~~nv~eddl~d~~ 242 (376)
T 4a9a_A 225 AEIAFRCDATVDDLIDVL 242 (376)
T ss_dssp EEEEECSCCCHHHHHHHH
T ss_pred CCeeecccCCHHHHHHHH
Confidence 344444555666665543
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=9.2e-15 Score=112.71 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=61.5
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 162 (200)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46899999995311 1233568999999999987643222211 11 24578899999998532110 0111
Q ss_pred HHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 163 IEYAE----------KNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 163 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..+.. .+..+++.+|++++.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 12211 12457899999999999999999988764
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=1.1e-14 Score=112.67 Aligned_cols=83 Identities=22% Similarity=0.181 Sum_probs=53.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCc-cccceeEEEEEEEecC------------------CcEEEEEEEeCCCh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSK-VTVGASFLSQTIALQD------------------STTVKFEIWDTAGQ 93 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~------------------~~~~~~~l~D~~g~ 93 (200)
++|+|+|.+|+|||||+|+|++..... .++ .|........ .+.+ ..+..+++||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999999864211 111 1222222211 2211 12357999999997
Q ss_pred hhhh----hc---ccccccCccEEEEEEeCCC
Q 028986 94 ERYA----AL---APLYYRGAAVAVVVYDITS 118 (200)
Q Consensus 94 ~~~~----~~---~~~~~~~~d~~i~v~d~~~ 118 (200)
.... .+ ....++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 5432 11 1224688999999999985
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=2.7e-14 Score=105.88 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=68.5
Q ss_pred EEEEEEeCCChhhhhhccc------ccccCccEEEEEEeCCCH---HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 83 VKFEIWDTAGQERYAALAP------LYYRGAAVAVVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
+.+.+|||||..+...... ..+.. +++++++|+... ..+.....+.. ......+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL--LIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH--HHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH--HHhcccCCCeEEEEecccccc
Confidence 4799999999865433221 23456 899999987643 22222111111 111123678999999999865
Q ss_pred CCcCCHHHHHH----------------------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986 154 KREVPAQDGIE----------------------------YAEKNG--MFFIETSAKTADNINQLFEVLITCTSS 197 (200)
Q Consensus 154 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~~~~ 197 (200)
..+. ++..+ ++..++ ++++++|++++.|+++++++|.+.+..
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3221 11111 123333 479999999999999999999987753
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=3.8e-15 Score=114.59 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=63.9
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH--H
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--Q 160 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~--~ 160 (200)
+.+.+|||||....... ....+|++++|+|++....+..+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 57999999995433222 3578999999999976543211111 00 1356889999999864321110 1
Q ss_pred HHHHHHHHc-------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 161 DGIEYAEKN-------GMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 161 ~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
+........ ..+++++|++++.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122211221 457899999999999999999988764
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=5.6e-15 Score=122.93 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=96.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce------------------------------------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA------------------------------------------ 68 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~------------------------------------------ 68 (200)
-...+|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 44569999999999999999999997763322111100
Q ss_pred ---------eEEEEEEEecCCcEEEEEEEeCCChhh-------------hhhcccccc-cCccEEEEEEeCCCHHhHHHH
Q 028986 69 ---------SFLSQTIALQDSTTVKFEIWDTAGQER-------------YAALAPLYY-RGAAVAVVVYDITSPDSFNKA 125 (200)
Q Consensus 69 ---------~~~~~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~ 125 (200)
......+..++. ..+.++||||... .......++ ..+|++++|+|++........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~--~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV--LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC--CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCC--CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 000111111121 2578999999322 223333344 578999999999875322222
Q ss_pred HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH----cC-CeEEEecCCCCCCHHHHHHHHHH
Q 028986 126 QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK----NG-MFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 126 ~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
..++..+ ...+.|+++|+||+|+.......... .. ... .+ .+++.+||+++.|++++++.|.+
T Consensus 207 l~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~i-l~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDV-LE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHH---CTTCSSEEEEEECTTSSCTTCCSHHH-HT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHH---HhcCCCEEEEEeCcccCCcchhhHHH-HH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2233333 34478999999999997654432221 11 001 12 25788999999999999998876
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=8e-14 Score=106.95 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=62.6
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 162 (200)
..+.++||+|..... ......+|.+++++|+...+..+.+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 579999999963211 1234679999999998755322211111 11 234567779999754322222222
Q ss_pred HHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 163 IEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 163 ~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
.++... +..+++.+|++++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 1457899999999999999999988654
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=1.6e-14 Score=119.37 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=75.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC--CCCC------C---Cc-----cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG--QFDP------T---SK-----VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~--~~~~------~---~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 98 (200)
||+|+|+.++|||||..+|+.. .... . .. ..-+.+.....+.+.... .+++++||||+.+|..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~-~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN-TKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS-CBCCCEECCCSSSTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC-EEEEEEECCCcHHHHH
Confidence 7999999999999999999741 1100 0 00 000111111111121222 5799999999999999
Q ss_pred cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (200)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 153 (200)
.....++-+|++|+|+|+...-..+...-| ....+. ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999976433332333 333333 678899999999753
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.46 E-value=1.8e-12 Score=108.49 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=78.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC--------CCCC----------CCccccceeEEEEEEEecC----CcEEEEEEE
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--------QFDP----------TSKVTVGASFLSQTIALQD----STTVKFEIW 88 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 88 (200)
++.=||+|+|+.++|||||..+|+.. .... .....+........+.+.. ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 44458999999999999999999731 1100 0001111111122222221 234789999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (200)
Q Consensus 89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 152 (200)
||||+-+|.......++-+|++|+|+|+...-......-|... .+. ++|.++++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc---CCCeEEEEcccccc
Confidence 9999999999999999999999999999976444433333333 323 78899999999974
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=1.7e-13 Score=103.71 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=79.4
Q ss_pred hhhhhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-HHHHHHHHHHcC
Q 028986 93 QERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKNG 170 (200)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 170 (200)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+....++. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5666777788999999999999999886 88888899887765 478999999999986543212 344556667778
Q ss_pred CeEEEecCCCCCCHHHHHHHHHH
Q 028986 171 MFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 171 ~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
.+++++||+++.|++++++.+..
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHhhccC
Confidence 99999999999999999987654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=94.59 Aligned_cols=106 Identities=8% Similarity=-0.087 Sum_probs=71.2
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHH----HHHcC-CCCCeEEEEEeCC-CCCCCCcCCHHHHHH
Q 028986 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE----LQKHG-SPDIVMALVGNKA-DLHEKREVPAQDGIE 164 (200)
Q Consensus 91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----i~~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~~ 164 (200)
+|+...+.+|.+|+.++|++|||+|.++.+-++ .+..+.. +.... ..++|++|++||. |+.. ..+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 378889999999999999999999999875443 3333322 22221 2678999999995 6643 344555444
Q ss_pred HHHH----cCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986 165 YAEK----NGMFFIETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 165 ~~~~----~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
.... ..+.+..|||.+|+|+.+.++||.+.+.+.+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3321 3556899999999999999999999887654
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=3.5e-11 Score=93.65 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCC------------c--EEEEEEEeCCChhhh
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDS------------T--TVKFEIWDTAGQERY 96 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~l~D~~g~~~~ 96 (200)
...+|+|+|++|+|||||+|+|++... .....+..........+.+.+. . +..+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 356899999999999999999999654 2222222222222222333221 1 136899999995321
Q ss_pred -------hhcccccccCccEEEEEEeCCC
Q 028986 97 -------AALAPLYYRGAAVAVVVYDITS 118 (200)
Q Consensus 97 -------~~~~~~~~~~~d~~i~v~d~~~ 118 (200)
.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1122334578999999999863
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=100.53 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=49.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhhh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQERY 96 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~ 96 (200)
...++|+|+|.+|+|||||+|+|++........+..+.......+.+.+.. +..+++||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 345789999999999999999999875432222222222222333332210 236999999997653
Q ss_pred hh-------cccccccCccEEEEEEeCCCH
Q 028986 97 AA-------LAPLYYRGAAVAVVVYDITSP 119 (200)
Q Consensus 97 ~~-------~~~~~~~~~d~~i~v~d~~~~ 119 (200)
.. .+..+++++|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 32 334567899999999998854
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=91.14 Aligned_cols=108 Identities=7% Similarity=-0.084 Sum_probs=74.7
Q ss_pred CCChhhhhhcccccccCccEEEEEEeCCCHHhHH---HHHHHHHHHHHcC-CCCCeEEEEEeC-CCCCCCCcCCHHHHHH
Q 028986 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN---KAQYWVKELQKHG-SPDIVMALVGNK-ADLHEKREVPAQDGIE 164 (200)
Q Consensus 90 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~p~iiv~nK-~D~~~~~~~~~~~~~~ 164 (200)
.+|+...+.+|.+|+.++|++|||+|.++++-++ .+..+...+.+.. ..++|++|++|| .|+.. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3467788999999999999999999999875443 2222222332221 358899999996 57743 344445444
Q ss_pred HHHH----cCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986 165 YAEK----NGMFFIETSAKTADNINQLFEVLITCTSSYC 199 (200)
Q Consensus 165 ~~~~----~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~ 199 (200)
.... ..+.+..|||.+|+|+.+.++||.+.+.+.+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 3456899999999999999999999987654
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=1.9e-11 Score=94.84 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=78.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC-----CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh---h-c----c
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG-----QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA---A-L----A 100 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~-~----~ 100 (200)
.+|+++|.+|+|||||+|+|++. ... ......+.+.......+.. .+.++||||..... . . .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~~~~----~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIPLES----GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEECST----TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEEeCC----CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999985 111 1111222333333333333 27899999943211 1 1 1
Q ss_pred ccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986 101 PLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 101 ~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
..+ .+..|+++++++..+...+..+.. +......+.|+++++||.|..+.... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 111 156899999999853211111110 11122457899999999998654432 22334444556666555555
Q ss_pred CCCC
Q 028986 179 KTAD 182 (200)
Q Consensus 179 ~~~~ 182 (200)
....
T Consensus 313 ~~~~ 316 (369)
T 3ec1_A 313 RYAA 316 (369)
T ss_dssp GGTT
T ss_pred hhhh
Confidence 4433
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=9.9e-10 Score=86.14 Aligned_cols=144 Identities=18% Similarity=0.231 Sum_probs=70.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEEecC-CcEEEEEEEeCCChhh------------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQD-STTVKFEIWDTAGQER------------ 95 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~------------ 95 (200)
...++++|+|++|+|||||+|.|.+..+...... ..+.......+.... +....++++|++|...
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 3446799999999999999999998753221110 111111112222222 2224789999987321
Q ss_pred ------hhhcccc---------cccCc--cE-EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986 96 ------YAALAPL---------YYRGA--AV-AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (200)
Q Consensus 96 ------~~~~~~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~ 157 (200)
+...... ....+ |+ ++++.|...+-+... . ..+... ..++|+|+|+||+|.....+.
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-i---eilk~L-~~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-L---VTMKKL-DSKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-H---HHHHHT-CSCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-H---HHHHHH-hhCCCEEEEEcchhccchHHH
Confidence 1111111 11222 33 555666654422222 1 222333 357899999999997654331
Q ss_pred C--HHHHHHHHHHcCCeEEEecCC
Q 028986 158 P--AQDGIEYAEKNGMFFIETSAK 179 (200)
Q Consensus 158 ~--~~~~~~~~~~~~~~~~~~S~~ 179 (200)
. ...+.+.....+++++.+|..
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 1 111111122347777777753
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=1.4e-10 Score=93.01 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=83.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHH------cCCC-----CCCCccc----------cceeEEEEEEE----------e--
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFV------RGQF-----DPTSKVT----------VGASFLSQTIA----------L-- 77 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~------~~~~-----~~~~~~~----------~~~~~~~~~~~----------~-- 77 (200)
.....|+|+|.+||||||+++.|. +... +...... .+......... +
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 3221 0000000 00111110000 0
Q ss_pred cCCcEEEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEeCCC
Q 028986 78 QDSTTVKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKAD 150 (200)
Q Consensus 78 ~~~~~~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D 150 (200)
.....+.+.|+||||.... ....... ...+|.+++|+|+........ ....+.. .+|+ ++|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCc
Confidence 0002257999999995421 1111111 126899999999987532211 1122222 1454 78899999
Q ss_pred CCCCCcCCHHHHHHHHHHcCCeE------------------EEecCCCCCC-HHHHHHHHHHh
Q 028986 151 LHEKREVPAQDGIEYAEKNGMFF------------------IETSAKTADN-INQLFEVLITC 194 (200)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~i~~~ 194 (200)
...... .+.......+.|+ +.+|+..|.+ +.++++++.+.
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 763321 1222333445543 3368888988 99999888765
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=9.1e-10 Score=85.39 Aligned_cols=97 Identities=23% Similarity=0.250 Sum_probs=72.9
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHH
Q 028986 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAE 167 (200)
Q Consensus 92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~ 167 (200)
..+.+...+..+.+.+|++++|+|++++. ..|...+.+. ..+.|+++|+||+|+.... ...+... .++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF-VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH-SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH-hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45678888899999999999999999863 3455555554 2378999999999996543 2233333 3456
Q ss_pred HcCC---eEEEecCCCCCCHHHHHHHHHHhh
Q 028986 168 KNGM---FFIETSAKTADNINQLFEVLITCT 195 (200)
Q Consensus 168 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~ 195 (200)
..+. .++.+||+++.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999997654
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=2.6e-09 Score=79.42 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=70.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc-------ccceeEEEEEEEecC-CcEEEEEEEeCCChhh---------
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-------TVGASFLSQTIALQD-STTVKFEIWDTAGQER--------- 95 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~--------- 95 (200)
.++++|+|++|+|||||+|.|++...+..... ..............+ +....++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 57899999999999999999998432211100 000000011111111 1113689999998211
Q ss_pred ---------hhh----------cccccccCccEEEEEEeCC-CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986 96 ---------YAA----------LAPLYYRGAAVAVVVYDIT-SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (200)
Q Consensus 96 ---------~~~----------~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 155 (200)
+.. .....+..+++.++++|.. .+-.-.. ...+..+. .. .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence 000 0011234468889999965 2211111 22333333 22 7899999999976532
Q ss_pred cCC--HHHHHHHHHHcCCeEEE
Q 028986 156 EVP--AQDGIEYAEKNGMFFIE 175 (200)
Q Consensus 156 ~~~--~~~~~~~~~~~~~~~~~ 175 (200)
+.. ...+.+....+++.+++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 211 12222334445666554
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=1.5e-08 Score=79.50 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=83.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccc-eeEEEEEEEecCCcEEEEEEEeCCChhhhh----hcc-cccccCc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG-ASFLSQTIALQDSTTVKFEIWDTAGQERYA----ALA-PLYYRGA 107 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~-~~~~~~~ 107 (200)
..++|+|++|+|||||+|.|.+...+.......+ .........+.....-.+.++|++|..... ... ..-+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 3799999999999999999998532221111111 000000011111111257899999853211 111 1113334
Q ss_pred cEEEEEEeCC--CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC-------CCCcCCHHH----HHHHH----HHcC
Q 028986 108 AVAVVVYDIT--SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH-------EKREVPAQD----GIEYA----EKNG 170 (200)
Q Consensus 108 d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~-------~~~~~~~~~----~~~~~----~~~~ 170 (200)
+..++ ++.. ...-.. +...+.. .+.|+++|.||.|+. .-.....++ +.+++ .+.+
T Consensus 150 ~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp SEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55554 7776 332111 2222322 257899999999873 111112222 23332 1222
Q ss_pred ---CeEEEecC--CCCCCHHHHHHHHHHhhcc
Q 028986 171 ---MFFIETSA--KTADNINQLFEVLITCTSS 197 (200)
Q Consensus 171 ---~~~~~~S~--~~~~~i~~~~~~i~~~~~~ 197 (200)
..++.+|+ ..+.+++++.+.|.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 35788999 5566799999999887765
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=2.2e-11 Score=94.46 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=72.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------c
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------A 100 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~ 100 (200)
.+|+++|.+|+|||||+|+|++..... ......+.+.....+.+.++ +.++||||....... .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~----~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE----SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS----CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC----eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 579999999999999999999853111 11122223332333333332 789999994221110 0
Q ss_pred cc--cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH-HHHHHcCCeEEEec
Q 028986 101 PL--YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI-EYAEKNGMFFIETS 177 (200)
Q Consensus 101 ~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~S 177 (200)
.. .....+.++++++.........+.. +......+.|+++++||.|..+... .+... .+.+..+..+.+.+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCc
Confidence 11 1356788999998743211111100 1112245789999999999865443 23333 33344555444433
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.82 E-value=2.3e-09 Score=83.15 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=71.0
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH----HHH
Q 028986 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE----YAE 167 (200)
Q Consensus 92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~ 167 (200)
.++.+...+..++..++++++|+|++++.+ .|...+.+. ..+.|+++|+||+|+.... ...+...+ ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 367788888888899999999999998753 233333333 2378899999999997542 22333333 355
Q ss_pred HcCC---eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 168 KNGM---FFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 168 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
..+. .++.+||+++.|++++++.|.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5666 6899999999999999999977654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.79 E-value=4.9e-09 Score=78.38 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=68.6
Q ss_pred EEeCCChh-hhhhcccccccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH
Q 028986 87 IWDTAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI 163 (200)
Q Consensus 87 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 163 (200)
+-..||+. .........+.++|+++.|+|+.++.+.. .+..|+ .++|.++|+||+|+..... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34578875 34455566788899999999999886553 334332 4688999999999965211 22223
Q ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986 164 EYAEKNGMFFIETSAKTADNINQLFEVLITCTS 196 (200)
Q Consensus 164 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~ 196 (200)
++.+..+.+++.+|++++.|+.++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 444456788999999999999999998877664
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=5.5e-08 Score=72.68 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=35.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 93 (200)
...++|+++|.+|+|||||+|+|.+........ ..+.+.....+... . .+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~-~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVG-K---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET-T---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeC-C---CEEEEECcCc
Confidence 456899999999999999999999876432222 22222222222221 1 4889999994
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=9.8e-08 Score=75.25 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred EEEEEEeCCChhh-----hhhccc-ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQER-----YAALAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~-----~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
+.+.++||+|... ...+.. .....+|.+++|+|+......... ...+.+. -.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCccc--
Confidence 5789999999321 111110 112347899999999875332221 1223322 1235688999997432
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 028986 157 VPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
...+.......+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23345555667888888876
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.51 E-value=4.6e-08 Score=72.31 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=34.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 94 (200)
++++++|.+|+|||||+|+|.+...... ..+.+.+.....+... ..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~----~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE----NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT----TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC----CCEEEEECCCcc
Confidence 6999999999999999999998765322 2222322222222221 257899999954
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.36 E-value=7.9e-07 Score=72.62 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=39.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEE--EecCCcEEEEEEEeCCChh
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTI--ALQDSTTVKFEIWDTAGQE 94 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~ 94 (200)
....++|+|+|.+|+|||||+|+|++.... .....+.+.+.....+ .........+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 356788999999999999999999987532 1111111111111111 1212222478999999954
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=3.2e-06 Score=66.81 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=47.9
Q ss_pred EEEEEEeCCChhh----h-hhcc-cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCC-e-EEEEEeCCCCCCC
Q 028986 83 VKFEIWDTAGQER----Y-AALA-PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI-V-MALVGNKADLHEK 154 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~-~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~iiv~nK~D~~~~ 154 (200)
+.+.++||||... . ..+. ...+..+|.+++|+|+..... .......+. ... | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 5789999999432 1 1110 112236899999999876531 111122222 124 4 7889999997432
Q ss_pred CcCCHHHHHHHHHHcCCeEEEec
Q 028986 155 REVPAQDGIEYAEKNGMFFIETS 177 (200)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~S 177 (200)
...+.......+.++..++
T Consensus 254 ----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEEC
T ss_pred ----hHHHHHHHHHHCCCEEEee
Confidence 1223445666777766653
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.31 E-value=1.4e-06 Score=71.87 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.|+|+|++|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.30 E-value=1.6e-07 Score=69.44 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=60.3
Q ss_pred CCChhh-hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986 90 TAGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (200)
Q Consensus 90 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 168 (200)
.||+.. ........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+..... .+...++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 356542 2234455678899999999999885543210 01 1 1 788999999999965321 2233444555
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHH
Q 028986 169 NGMFFIETSAKTADNINQLFEVLIT 193 (200)
Q Consensus 169 ~~~~~~~~S~~~~~~i~~~~~~i~~ 193 (200)
.+.++ .+|++++.|++++++.+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999998877654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.28 E-value=1.8e-07 Score=73.66 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=50.8
Q ss_pred EEEEEEeCCChhh------hhhcccc--cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986 83 VKFEIWDTAGQER------YAALAPL--YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (200)
Q Consensus 83 ~~~~l~D~~g~~~------~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 154 (200)
+.+.++||||... ....... .....|.+++|+|+......... ...+.+. -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 5688999999532 1111111 11246899999999865332222 2223222 123678899999743
Q ss_pred CcCCHHHHHHHHHHcCCeEEEecC
Q 028986 155 REVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
..-.+.......+.|+.+++.
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC
T ss_pred ---cchHHHHHHHHHCCCEEEEEC
Confidence 233455666667999888886
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.28 E-value=1.9e-07 Score=70.36 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=62.9
Q ss_pred hhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHHcCCeE
Q 028986 97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNGMFF 173 (200)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 173 (200)
..+....+.++|.+++|+|+..+. +...+..++.... ..++|.++|+||+|+....+. ..+...+.....+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 344455789999999999999764 3344454443333 347889999999999765320 1233445555668899
Q ss_pred EEecCCCCCCHHHHHHH
Q 028986 174 IETSAKTADNINQLFEV 190 (200)
Q Consensus 174 ~~~S~~~~~~i~~~~~~ 190 (200)
+.+|+.++.|++++++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999888776654
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.21 E-value=2.6e-06 Score=64.07 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=53.1
Q ss_pred EEEEEEeCCChhh--hh-hccc-----ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCC
Q 028986 83 VKFEIWDTAGQER--YA-ALAP-----LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHE 153 (200)
Q Consensus 83 ~~~~l~D~~g~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~ 153 (200)
+.+.++||||... .. .+.. .....+|.+++|+|+...... ......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5789999999654 21 1111 123458999999998754211 111222222 244 678899999643
Q ss_pred CCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (200)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 185 (200)
....+.......+.++.+++. |++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~~--Ge~v~ 279 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIGT--GEKID 279 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred ----chHHHHHHHHHHCcCEEEEeC--CCChh
Confidence 233445666777888887763 44443
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.05 E-value=1.2e-05 Score=61.75 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=57.7
Q ss_pred cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCeEEEecC
Q 028986 101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.....++|.+++|.... +. +...+..++-..... ++|.++|+||+|+...... ..+.........+.+++.+|+
T Consensus 125 ~~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 125 KPIAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEEEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence 34578899999886654 43 344455555444333 6778999999999754320 011223344456889999999
Q ss_pred CCCCCHHHHHHHH
Q 028986 179 KTADNINQLFEVL 191 (200)
Q Consensus 179 ~~~~~i~~~~~~i 191 (200)
.++.+++++...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999887654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1e-05 Score=61.62 Aligned_cols=88 Identities=9% Similarity=0.086 Sum_probs=48.6
Q ss_pred EEEEEeCCChhhhhh-----c--ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 84 KFEIWDTAGQERYAA-----L--APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 84 ~~~l~D~~g~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
.+.++|++|...... + .... -..|-.++++|+.... .+......+.+... ..++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ra-l~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~a~-- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARV-TKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDADAR-- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHH-HCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGCSC--
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHH-hcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCccc--
Confidence 466799999532111 0 0111 1368899999977653 22222233332211 14678899996321
Q ss_pred CCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986 157 VPAQDGIEYAEKNGMFFIETSAKTADNI 184 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i 184 (200)
.-.+.......+.|+.+++ +|+++
T Consensus 284 --~G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 284 --GGAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp --CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred --hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence 2335566677788888877 44443
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.84 E-value=1.4e-06 Score=69.78 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=58.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--hhhcc--------
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--YAALA-------- 100 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~-------- 100 (200)
...+.|+++|.+||||||+.++|....... ...+............ .+......+||..|.+. ....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~-~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDM-VKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHH-HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhh-ccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999998642111 0111110000000000 01112345789888732 22222
Q ss_pred cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc
Q 028986 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH 135 (200)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 135 (200)
..++...++.++|+|.++. +.+....|+..+.+.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 4456567888999999987 455566676666654
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.75 E-value=4.8e-05 Score=60.20 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
.+..-|.|+|++++|||+|+|.|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3455688999999999999999986
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.70 E-value=2.3e-05 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.772 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+++|+|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=4.1e-05 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999874
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.54 E-value=4.7e-05 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.50 E-value=9.9e-05 Score=56.75 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQF 58 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~ 58 (200)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998643
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=2.4e-05 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998854
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.44 E-value=7.4e-05 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999875
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.43 E-value=7.5e-05 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999874
No 243
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.43 E-value=0.00083 Score=53.06 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=44.3
Q ss_pred EEEEEEeCCChhhhh-hccc-----ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCC
Q 028986 83 VKFEIWDTAGQERYA-ALAP-----LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKR 155 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~ 155 (200)
+.+.|+||||..... .... .....+|.+++|+|+....... .....+.. ..+ .-+|+||.|....-
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 578999999953221 1111 1133578999999988542221 11122222 122 34688999974321
Q ss_pred cCCHHHHHHHHHHcCCeEEEe
Q 028986 156 EVPAQDGIEYAEKNGMFFIET 176 (200)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~ 176 (200)
..+.......+.++.++
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 23345555566665444
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=7.9e-05 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|+|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999885
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.42 E-value=8e-05 Score=52.81 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999885
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=9e-05 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998853
No 247
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.39 E-value=0.00013 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999975
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.38 E-value=9.4e-05 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999884
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=0.00011 Score=51.80 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-|+|+|++|||||||++.|...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.36 E-value=8.6e-05 Score=51.05 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=17.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028986 35 KLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~ 54 (200)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.36 E-value=0.00012 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
....|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999873
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.34 E-value=0.00047 Score=51.86 Aligned_cols=22 Identities=50% Similarity=0.776 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999999 54
No 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.33 E-value=0.0012 Score=46.79 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=54.1
Q ss_pred EEEEEEeCCCh-hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH
Q 028986 83 VKFEIWDTAGQ-ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161 (200)
Q Consensus 83 ~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 161 (200)
+.+.++|+|+. .. ......+..+|.+|++...+ ..+...+..+++.+.... +.++.+|+|+.|..... ...+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHHH
Confidence 57899999876 32 12234566799999999875 445666666777776632 45688999999964311 1334
Q ss_pred HHHHHHHcCCeEE
Q 028986 162 GIEYAEKNGMFFI 174 (200)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (200)
..+..++.+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4555555665544
No 254
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.32 E-value=0.00018 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366789999999999999875
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.32 E-value=0.00013 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999854
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.32 E-value=0.00013 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999875
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.31 E-value=0.00011 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999884
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.29 E-value=0.00015 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
|+|+||+||||+||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.28 E-value=0.00015 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|+|++||||||+++.|...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.25 E-value=0.00014 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.25 E-value=0.00017 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.24 E-value=0.00018 Score=49.04 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCcHHHHHHHH
Q 028986 34 VKLVLLGDSGVGKSCIVLRF 53 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l 53 (200)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.23 E-value=0.00018 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999864
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.23 E-value=0.00018 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-++++|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.23 E-value=0.00018 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.|+|+|++||||||+++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998854
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.22 E-value=0.00019 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999976
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.21 E-value=0.00018 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+.|||||||++.+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
No 268
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.21 E-value=0.0002 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999874
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.21 E-value=0.00018 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998853
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.20 E-value=0.00021 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|+|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999773
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.20 E-value=0.00018 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.19 E-value=0.00026 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999987
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.19 E-value=0.00019 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999884
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.17 E-value=0.00025 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHH
Q 028986 34 VKLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~ 54 (200)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00023 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|.|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.17 E-value=0.00023 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
++|+|.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.17 E-value=0.0002 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998853
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.17 E-value=0.00022 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999873
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.16 E-value=0.0002 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998853
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.16 E-value=0.00022 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+.|||||||++.+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.16 E-value=0.00023 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999885
No 282
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00026 Score=50.33 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
++|+|+|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999965
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.15 E-value=0.00022 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999999885
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.15 E-value=0.00022 Score=52.13 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.15 E-value=0.00024 Score=53.42 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999986
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.00036 Score=47.87 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|+|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 287
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.14 E-value=0.00022 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 288
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.14 E-value=0.00025 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00023 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.13 E-value=0.00027 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00024 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999885
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.12 E-value=0.00019 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
No 293
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.12 E-value=0.00022 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 294
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.11 E-value=0.00032 Score=49.79 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
++|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.11 E-value=0.00029 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
+|+|+|++||||||+++.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.11 E-value=0.00031 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|+|+|++||||||+++.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.10 E-value=0.00025 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999885
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00032 Score=49.31 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+++|++||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999975
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.09 E-value=0.00029 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999885
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.09 E-value=0.00026 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
No 301
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00033 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|+|++||||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.08 E-value=0.00031 Score=48.26 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|++.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999874
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.08 E-value=0.00041 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|+|++||||||+++.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.08 E-value=0.00032 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...|+|+|++|||||||++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998763
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.06 E-value=0.00029 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998853
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.06 E-value=0.00052 Score=51.89 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=22.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
....-|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44557899999999999999999873
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.05 E-value=0.0003 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999885
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.05 E-value=0.00038 Score=48.82 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999976
No 309
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00038 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQF 58 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~~ 58 (200)
.++++|++|||||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999998643
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.04 E-value=0.00042 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 311
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00042 Score=48.62 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34567999999999999999999875
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.04 E-value=0.00049 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.04 E-value=0.00039 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|||||||+++|...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999874
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.03 E-value=0.00022 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=14.9
Q ss_pred eEEEEcCCCCcHHHHHHHHH-cC
Q 028986 35 KLVLLGDSGVGKSCIVLRFV-RG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~-~~ 56 (200)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999999 64
No 315
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.03 E-value=0.00048 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..++|+|.|++||||||+++.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999965
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.02 E-value=0.00038 Score=50.44 Aligned_cols=20 Identities=30% Similarity=0.725 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028986 35 KLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~ 54 (200)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 317
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.02 E-value=0.00046 Score=48.00 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.02 E-value=0.00035 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 319
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.02 E-value=0.03 Score=41.90 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=53.9
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEE-EEEeCCCCCCCCcCCHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMA-LVGNKADLHEKREVPAQ 160 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~i-iv~nK~D~~~~~~~~~~ 160 (200)
+.+.++|+|+..... .....+..+|.+|++...+ ..+...+..++..+.... ..+.+++ +|+|+.+.. .
T Consensus 157 yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~ 227 (307)
T 3end_A 157 TDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 227 (307)
T ss_dssp CSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------H
Confidence 678999998743211 1234567799999999764 445666666777766542 3456654 889999831 3
Q ss_pred HHHHHHHHcCCeEEE
Q 028986 161 DGIEYAEKNGMFFIE 175 (200)
Q Consensus 161 ~~~~~~~~~~~~~~~ 175 (200)
...++.+.++.+++.
T Consensus 228 ~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 228 EVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCcee
Confidence 455666666776554
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00038 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00045 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 322
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00043 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
++|+|.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.99 E-value=0.00052 Score=47.59 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..+|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999764
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.98 E-value=0.0005 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.98 E-value=0.00066 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 30 KNLRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 30 ~~~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567799999999999999999865
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.97 E-value=0.00047 Score=47.31 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.97 E-value=0.00063 Score=48.01 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...|+|+|++|||||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999874
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.96 E-value=0.00078 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.96 E-value=0.0005 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999965
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.96 E-value=0.00054 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 331
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.95 E-value=0.0012 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.95 E-value=0.00023 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.0006 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998865
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.94 E-value=0.00057 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|+|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999977
No 335
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.94 E-value=0.00042 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999885
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.94 E-value=0.0003 Score=53.03 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5889999999999999998874
No 337
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.00046 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999773
No 338
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.94 E-value=0.00048 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999884
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00056 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 340
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.93 E-value=0.00045 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999854
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.92 E-value=0.00034 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00064 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999999976
No 343
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.91 E-value=0.00044 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+.|||||||++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999885
No 344
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.91 E-value=0.00055 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36799999999999999998853
No 345
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.90 E-value=0.00054 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999853
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.89 E-value=0.00067 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...-|+|.|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999975
No 347
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.0007 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 348
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.88 E-value=0.00081 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.88 E-value=0.00058 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.88 E-value=0.00058 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999999853
No 351
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.87 E-value=0.0006 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999853
No 352
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.87 E-value=0.00061 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999999853
No 353
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.86 E-value=0.00095 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999888763
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00062 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 355
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.86 E-value=0.00066 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+++.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 356
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.84 E-value=0.00074 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 357
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00075 Score=46.46 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.84 E-value=0.001 Score=49.41 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=21.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999874
No 359
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.00075 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.84 E-value=0.00065 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999999853
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.83 E-value=0.00067 Score=52.49 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998853
No 362
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.83 E-value=0.00059 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999884
No 363
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0028 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998873
No 364
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00068 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.....|+++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34467999999999999999998763
No 365
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.82 E-value=0.00071 Score=49.53 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999975
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.0011 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
....|+++|.+||||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999876
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.82 E-value=0.00068 Score=51.05 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=46.0
Q ss_pred EEEEEeCCChhhhh------------hcccccccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986 84 KFEIWDTAGQERYA------------ALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150 (200)
Q Consensus 84 ~~~l~D~~g~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D 150 (200)
.+.++|++|..... ..........+.+++++|+...... +.+.. +.+.. +. .++++||.|
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~----~~~~~--~~-t~iivTh~d 258 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK----FHEAV--GL-TGVIVTKLD 258 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH----HHHHH--CC-SEEEEECTT
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHH----HHHHc--CC-cEEEEECCc
Confidence 46689999942111 1111233457788889998865322 33222 22211 12 467889998
Q ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986 151 LHEKREVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
.... .-.+.......+.|+.++..
T Consensus 259 ~~a~----gg~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 259 GTAK----GGVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp SSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred cccc----ccHHHHHHHHHCCCeEEEeC
Confidence 6422 12334555667888777653
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.81 E-value=0.00083 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.81 E-value=0.00087 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|+|.|.+||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.80 E-value=0.00097 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|+|++|||||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999875
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.00056 Score=52.10 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999885
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00074 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.78 E-value=0.00094 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999873
No 374
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.77 E-value=0.00089 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.76 E-value=0.00095 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHH
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~ 54 (200)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999998
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.76 E-value=0.0008 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
-.++++|++||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999976
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.76 E-value=0.00054 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999853
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.75 E-value=0.00077 Score=52.99 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.75 E-value=0.00095 Score=46.35 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.75 E-value=0.00084 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999976
No 381
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.74 E-value=0.0041 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHH
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~ 54 (200)
.+..-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345566699999999999999665
No 382
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.74 E-value=0.00081 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 383
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.00087 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999884
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.73 E-value=0.00098 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.73 E-value=0.00096 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.72 E-value=0.001 Score=45.57 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+.|+|++|||||||+.+|...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999873
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.72 E-value=0.0012 Score=45.65 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.71 E-value=0.0012 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.71 E-value=0.00099 Score=46.01 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 390
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.70 E-value=0.00087 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999874
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.70 E-value=0.0011 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999866
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.70 E-value=0.001 Score=45.37 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 393
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.69 E-value=0.00085 Score=54.16 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|||||||++.+.+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998853
No 394
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.68 E-value=0.0011 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999763
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.66 E-value=0.00039 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 396
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00091 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|+.|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6999999999999999999884
No 397
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.66 E-value=0.0011 Score=47.39 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-++|+|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999985
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.66 E-value=0.0011 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.+|+|+.|+|||||++++...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998763
No 399
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.64 E-value=0.0013 Score=44.73 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
+|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999865
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.64 E-value=0.00054 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999853
No 401
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.62 E-value=0.0009 Score=45.91 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988763
No 402
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.0014 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|.+||||||+++.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.62 E-value=0.0013 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+++.|++|+|||+|++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 404
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.62 E-value=0.0015 Score=44.90 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+++|.+||||||+++.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 405
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00077 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=15.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 406
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0015 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998874
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.57 E-value=0.00086 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..-|+|.|+.|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999874
No 408
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.57 E-value=0.0014 Score=46.93 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998763
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0013 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
-.|+++|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3688999999999999999976
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0014 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.52 E-value=0.0016 Score=43.67 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 028986 36 LVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~ 55 (200)
.+|+|+.|+|||+|+.++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999863
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.50 E-value=0.0015 Score=52.32 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=46.1
Q ss_pred EEEEEEeCCChhh----hhh----c---cccc-ccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986 83 VKFEIWDTAGQER----YAA----L---APLY-YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (200)
Q Consensus 83 ~~~~l~D~~g~~~----~~~----~---~~~~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 149 (200)
+.+.++||+|... +.. . ...+ ....+-+++++|+.... .+..++. +.... ++ ..+|+||.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~----f~~~~--~i-tgvIlTKL 448 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL----FHEAV--GL-TGITLTKL 448 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH----HHHHT--CC-SEEEEECG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH----HHhhc--CC-CEEEEEcC
Confidence 3578999999421 111 1 1111 12356788999987652 2333222 22221 22 35778999
Q ss_pred CCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986 150 DLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
|... . .-.+..++...+.++.++..
T Consensus 449 D~ta--k--gG~~lsi~~~~~~PI~fig~ 473 (503)
T 2yhs_A 449 DGTA--K--GGVIFSVADQFGIPIRYIGV 473 (503)
T ss_dssp GGCS--C--CTHHHHHHHHHCCCEEEEEC
T ss_pred CCcc--c--ccHHHHHHHHHCCCEEEEec
Confidence 9532 1 23456666677888777544
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.50 E-value=0.0014 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.49 E-value=0.0025 Score=45.86 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999874
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.48 E-value=0.0016 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
+++|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999963
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.47 E-value=0.0012 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++|+|+.|||||||++.|.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46788999999999999999753
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0017 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 418
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.46 E-value=0.0013 Score=46.36 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988876
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.46 E-value=0.002 Score=42.79 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|++.|++|+|||++++.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999874
No 420
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.46 E-value=0.0017 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999884
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.46 E-value=0.0022 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...|+|+|.+||||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999876
No 422
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.0018 Score=48.42 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+..+++.|+||+|||+|++++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446788899999999999999874
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.40 E-value=0.002 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++++|++|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 424
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.37 E-value=0.0021 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.+++.|++|+|||+|++++...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999874
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.37 E-value=0.002 Score=51.55 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.37 E-value=0.002 Score=49.97 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.++|+|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999999986
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.36 E-value=0.0028 Score=44.32 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.....|.++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998763
No 428
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.36 E-value=0.0022 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999874
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.35 E-value=0.0025 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 430
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.35 E-value=0.0027 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=20.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
....+++.|++|+|||+|++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999987665
No 431
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.32 E-value=0.0027 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.|++.|++|+|||+|++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999873
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.31 E-value=0.0023 Score=45.62 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 433
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0023 Score=45.83 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=19.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+++=|++.|+++.||++|+++|++.
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CceEEEecCcccccHHHHHHHHhcc
Confidence 3433444499999999999999996
No 434
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.30 E-value=0.0023 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999853
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.0021 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998854
No 436
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.26 E-value=0.0026 Score=47.66 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|++.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5999999999999999999874
No 437
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.26 E-value=0.0022 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5889999999999999999884
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.25 E-value=0.0025 Score=52.33 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999885
No 439
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.24 E-value=0.0039 Score=45.90 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557999999999999999999874
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0026 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999854
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.003 Score=44.32 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|+|+|++|+|||+|+..|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 442
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.20 E-value=0.0042 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998874
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.18 E-value=0.0028 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999873
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.18 E-value=0.003 Score=48.78 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 028986 36 LVLLGDSGVGKSCIVLRFV 54 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~ 54 (200)
.+|+|+.|+|||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999987
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.18 E-value=0.0027 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.15 E-value=0.0037 Score=45.04 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 32 ~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
....|+|+|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999875
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0034 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 448
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.12 E-value=0.0071 Score=42.26 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=54.8
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHH
Q 028986 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQ 160 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~ 160 (200)
+.+.++|+|+.. .......+..+|.+++++..+... ..+..+++.+.+.. ....++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 578999999854 223344566689999999887654 55666666666543 345677999999995321 123
Q ss_pred HHHHHHHHcCCeEE
Q 028986 161 DGIEYAEKNGMFFI 174 (200)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (200)
+..+..+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555555444
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.12 E-value=0.0038 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|.|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 450
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.003 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.09 E-value=0.0032 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|++|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998854
No 452
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.09 E-value=0.0034 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~~ 57 (200)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 453
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.08 E-value=0.0036 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..+++.|++|+|||+|++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 454
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.08 E-value=0.0042 Score=44.69 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
...+++.|+|++||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.08 E-value=0.008 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..-|+|+|++||||||+++.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345788999999999999999763
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.07 E-value=0.0022 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999884
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.06 E-value=0.0023 Score=46.97 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 31 ~~~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999988764
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0037 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|++.||||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999873
No 459
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0034 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 460
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.03 E-value=0.0025 Score=52.47 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998874
No 461
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.02 E-value=0.004 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...|++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999874
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.02 E-value=0.0041 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.|++.|++|+|||+|++++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999874
No 463
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.00 E-value=0.057 Score=40.59 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455577999999999999874
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.00 E-value=0.0056 Score=46.91 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999987765
No 465
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0046 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999884
No 466
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.99 E-value=0.0043 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.97 E-value=0.0041 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 468
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.96 E-value=0.004 Score=46.65 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=46.7
Q ss_pred EEEEEEeCCChhhhhh----ccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986 83 VKFEIWDTAGQERYAA----LAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 156 (200)
..+.++||+|...... .....+. ..+.+++|+|++.. ...+..+...+. ..+. .-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccc--
Confidence 4789999999532211 0111222 36788899988754 223333322222 1111 3456799996432
Q ss_pred CCHHHHHHHHHHcCCeEEEecC
Q 028986 157 VPAQDGIEYAEKNGMFFIETSA 178 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~S~ 178 (200)
...+...+...+.++..+..
T Consensus 255 --~g~~~~~~~~~~~pi~~i~~ 274 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMTN 274 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEECC
T ss_pred --hhHHHHHHHHHCcCEEEEEC
Confidence 23556666777887666543
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.96 E-value=0.0045 Score=46.89 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
.|+|+|++|||||||...|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 470
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.0044 Score=44.61 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 028986 35 KLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~ 55 (200)
-++|+|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 471
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.93 E-value=0.0047 Score=46.50 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=48.7
Q ss_pred EEEEEEeCCChhhhh--------h---cccc-cccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986 83 VKFEIWDTAGQERYA--------A---LAPL-YYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (200)
Q Consensus 83 ~~~~l~D~~g~~~~~--------~---~~~~-~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 149 (200)
..+.++|+||..... . .... .-...+.+++|+|+.... .+..+.. +.+. .++ .-+|+||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~----~~~~--~~i-~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI----FKEA--VNV-TGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH----HHHH--SCC-CEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHH----HHhc--CCC-CEEEEeCC
Confidence 368999999942111 1 1111 123478899999987442 2222222 2222 122 34667999
Q ss_pred CCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (200)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 180 (200)
|.... .-.+.......+.|+.++..-.
T Consensus 260 D~~~~----gG~~l~~~~~~~~Pi~~i~~Ge 286 (306)
T 1vma_A 260 DGTAK----GGITLAIARELGIPIKFIGVGE 286 (306)
T ss_dssp GGCSC----TTHHHHHHHHHCCCEEEEECSS
T ss_pred CCccc----hHHHHHHHHHHCCCEEEEeCCC
Confidence 96322 2246677777888887776533
No 472
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.93 E-value=0.0022 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|||||||++.+.+.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988874
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0045 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRGQ 57 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~~ 57 (200)
++|+|+.|+|||||++.+.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999854
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.92 E-value=0.0047 Score=47.07 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36889999999999999998763
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0042 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-+.|+|++|+|||||++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.89 E-value=0.0051 Score=46.31 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-.+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.87 E-value=0.0056 Score=43.15 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 028986 36 LVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~ 55 (200)
.+|+|+.|+|||||+.++..
T Consensus 26 ~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56889999999999998853
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.87 E-value=0.0029 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++|+|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988874
No 479
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0057 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999884
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.85 E-value=0.0056 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.310 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 028986 36 LVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 36 i~i~G~~~sGKSsli~~l~~~ 56 (200)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999864
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.83 E-value=0.0058 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 482
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.81 E-value=0.0058 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-|+|+||+|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.78 E-value=0.0061 Score=43.19 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHc
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~ 55 (200)
+.|+|.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998866
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.78 E-value=0.0055 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+++.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 485
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.006 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
+-.|++.||||+|||.|++++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346999999999999999999873
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.77 E-value=0.0056 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999774
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.77 E-value=0.0023 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999863
No 488
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.76 E-value=0.0082 Score=45.13 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-|+|+|++|||||+|...|...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5789999999999999999763
No 489
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.75 E-value=0.0058 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.|++.|++|+|||+|++++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999874
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.72 E-value=0.0061 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...|++.|++|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999874
No 491
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.72 E-value=0.0056 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-+++++|++|+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.72 E-value=0.0031 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=17.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHc
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~ 55 (200)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998865
No 493
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.71 E-value=0.0049 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
-.++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999863
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.70 E-value=0.0059 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.70 E-value=0.0063 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 496
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.69 E-value=0.0067 Score=41.57 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-|+|.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 36899999999999999999874
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.69 E-value=0.0059 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 028986 35 KLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 35 ~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.++++|++|+|||+|++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 498
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.67 E-value=0.0069 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 33 ~~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
.-.|++.|++|+|||+|++++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999874
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.67 E-value=0.0069 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|+|.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46999999999999999999875
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.67 E-value=0.0078 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHcC
Q 028986 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (200)
Q Consensus 34 ~~i~i~G~~~sGKSsli~~l~~~ 56 (200)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
Done!