BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028987
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 10 VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
VETP ++ + YEIR Y P+ + + + GF+ L +YI
Sbjct: 42 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG---- 97
Query: 66 QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
+N K KI MTAPV + P + + +T+ +P + Q + P+P
Sbjct: 98 KNEKEMKIKMTAPVTSYVEPGSGPFS-----------ESTITISLYIPSEQQF--DPPRP 144
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
++ V I + E V F G +S + E++ L L +DG KV + + A YN
Sbjct: 145 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 203
Query: 184 PWTLPPFRTNEVMI 197
P L R NEV +
Sbjct: 204 PVKLLN-RNNEVWL 216
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 10 VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
VETP ++ + YEIR Y P+ + + + GF+ L +YI
Sbjct: 23 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG---- 78
Query: 66 QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
+N K KI MTAPV + P + + +T+ +P + Q + P+P
Sbjct: 79 KNEKEMKIKMTAPVTSYVEPGSGPFS-----------ESTITISLYIPSEQQF--DPPRP 125
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
++ V I + E V F G +S + E++ L L +DG KV + + A YN
Sbjct: 126 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 184
Query: 184 PWTLPPFRTNEVMI 197
P L R NEV +
Sbjct: 185 PVKL-LNRNNEVWL 197
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 10 VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
VETP ++ + YEIR Y P+ + + + GF+ L +YI
Sbjct: 23 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQG---- 78
Query: 66 QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
+N K KI TAPV + P + P E +T+ +P + Q + P+P
Sbjct: 79 KNEKEXKIKXTAPVTSYVEP------GSGPF-----ESSTITISLYIPSEQQF--DPPRP 125
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
++ V I + E V F G +S + E++ L L +DG KV + + A YN
Sbjct: 126 LESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 184
Query: 184 PWTLPPFRTNEVMI 197
P L R NEV +
Sbjct: 185 PVKL-LNRNNEVWL 197
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 10 VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
VETP ++ + YEIR Y P+ + + + GF+ L +YI
Sbjct: 23 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQG---- 78
Query: 66 QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
+N K KI TAPV + P + + +T+ +P + Q + P+P
Sbjct: 79 KNEKEXKIKXTAPVTSYVEPGSGPFS-----------ESTITISLYIPSEQQF--DPPRP 125
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
++ V I + E V F G +S + E++ L L +DG KV + + A YN
Sbjct: 126 LESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 184
Query: 184 PWTLPPFRTNEVMI 197
P L R NEV +
Sbjct: 185 PVKL-LNRNNEVWL 197
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 55 LANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPE 114
+ Y+G N K + MT PV P E+ +K + + F +P
Sbjct: 67 IMKYVGGT----NDKGVGMGMTVPVSFAVFPNED-----------GSLQKKLKVWFRIPN 111
Query: 115 KYQKAEEAPKPVDERVVIRE-EGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVV 173
++Q + P P DE V I E EG Y +FGG A + +L+ +LE
Sbjct: 112 QFQGS--PPAPSDESVKIEEREGITVYS-TQFGGYAKEADYVAHATQLRTTLEGTPATYQ 168
Query: 174 GQ-FLLARYNPPWTLPPF-RTNEVMI 197
G + A Y+PP + P+ R NEV +
Sbjct: 169 GDVYYCAGYDPP--MKPYGRRNEVWL 192
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 55 LANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPE 114
+ Y+G N K + MT PV P E+ +K + + F +P
Sbjct: 67 IMKYVGGT----NDKGVGMGMTVPVSFAVFPNED-----------GSLQKKLKVWFRIPN 111
Query: 115 KYQKAEEAPKPVDERVVIRE-EGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVV 173
++Q + P P DE V I E EG Y +FGG A + +L+ +LE
Sbjct: 112 QFQGS--PPAPSDESVKIEEREGITVYS-TQFGGYAKEADYVAHATQLRTTLEGTPATYQ 168
Query: 174 GQ-FLLARYNPPWTLPPF-RTNEVMI 197
G + A Y+PP + P+ R NEV +
Sbjct: 169 GDVYYCAGYDPP--MKPYGRRNEVWL 192
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 55 LANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPE 114
+ Y+G N K + MT PV P E+ +K + + F +P
Sbjct: 64 IMKYVGGT----NDKGVGMGMTVPVSFAVFPNED-----------GSLQKKLKVWFRIPN 108
Query: 115 KYQKAEEAPKPVDERVVIRE-EGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVV 173
++Q + P P DE V I E EG Y +FGG A + +L+ +LE
Sbjct: 109 QFQGS--PPAPSDESVKIEEREGITVYS-TQFGGYAKEADYVAHATQLRTTLEGTPATYQ 165
Query: 174 GQ-FLLARYNPPWTLPPF-RTNEVMI 197
G + A Y+PP + P+ R NEV +
Sbjct: 166 GDVYYCAGYDPP--MKPYGRRNEVWL 189
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
Length = 476
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 19 QSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGN 64
+++ +E+ +Y P+ A F G G SVLA+++GA+G+
Sbjct: 406 ETSMVHELNRYIPTAAA--------FGGLCIGALSVLADFLGAIGS 443
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 66 QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
Q+T E+ ++ A V ++ PE + + PV + E +V + + + PK
Sbjct: 769 QDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMW----------QEPKE 818
Query: 126 VDERVVIREEGERKYG 141
+ +V+ E R+YG
Sbjct: 819 PNGLIVLYEVSYRRYG 834
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 66 QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
Q+T E+ ++ A V ++ PE + + PV + E +V + + + PK
Sbjct: 788 QDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMW----------QEPKE 837
Query: 126 VDERVVIREEGERKYG 141
+ +V+ E R+YG
Sbjct: 838 PNGLIVLYEVSYRRYG 853
>pdb|4IRM|A Chain A, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|B Chain B, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|C Chain C, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
Length = 330
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 76 TAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQF-VLPEKYQK 118
TA V T ++P EE A+T V +++EKK V F VL + Q
Sbjct: 27 TAEVTTSNAPSEEVTAVTTEVQGETEEKKKVLTTFTVLADMVQN 70
>pdb|3UJP|A Chain A, Structure Of Mntc Protein At 2.7a
pdb|3UJP|B Chain B, Structure Of Mntc Protein At 2.7a
pdb|3UJP|C Chain C, Structure Of Mntc Protein At 2.7a
Length = 307
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 76 TAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVL 112
TA V T ++P EE A+T V +++EKK V F +
Sbjct: 4 TAEVTTSNAPSEEVTAVTTEVQGETEEKKKVLTTFTV 40
>pdb|2YNQ|A Chain A, Crystal Structure Of Geobacillus Thermodenitrificans Essb
Extracellular Fragment
pdb|2YNQ|B Chain B, Crystal Structure Of Geobacillus Thermodenitrificans Essb
Extracellular Fragment
pdb|2YNQ|C Chain C, Crystal Structure Of Geobacillus Thermodenitrificans Essb
Extracellular Fragment
pdb|2YNQ|D Chain D, Crystal Structure Of Geobacillus Thermodenitrificans Essb
Extracellular Fragment
Length = 161
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 35/57 (61%)
Query: 76 TAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVI 132
++ V+T+S EE++ ++ + K+DE+ M+ ++ + ++A E + +++R +I
Sbjct: 49 SSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGRSQSEEALELARTIEDRDLI 105
>pdb|1XVL|A Chain A, The Three-Dimensional Structure Of Mntc From Synechocystis
6803
pdb|1XVL|B Chain B, The Three-Dimensional Structure Of Mntc From Synechocystis
6803
pdb|1XVL|C Chain C, The Three-Dimensional Structure Of Mntc From Synechocystis
6803
Length = 321
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 76 TAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVL 112
TA V T ++P EE A+T V +++EKK V F +
Sbjct: 18 TAEVTTSNAPSEEVTAVTTEVQGETEEKKKVLTTFTV 54
>pdb|1H21|A Chain A, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
pdb|1H21|B Chain B, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
pdb|1H21|C Chain C, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
pdb|1H21|D Chain D, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
Length = 247
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 6 GKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALG 63
G+ + +++ + F ++ K P A+V YD +KG GF + +G +G
Sbjct: 1 GEAQPASGRFDQVGGAFGWKPHKLDPKECAQVAYDGYWYKG-FGCGFGAFYSIVGLMG 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,397,310
Number of Sequences: 62578
Number of extensions: 276644
Number of successful extensions: 549
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 46
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)