Query 028987
Match_columns 200
No_of_seqs 116 out of 480
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8j_A Heme-binding protein 2; 100.0 2.2E-56 7.5E-61 369.4 17.6 175 8-200 21-200 (212)
2 2gov_A P22HBP, heme-binding pr 100.0 2.5E-56 8.4E-61 365.1 16.8 174 8-199 16-194 (195)
3 4b0y_A Heme-binding protein 2; 100.0 3.9E-56 1.3E-60 370.9 17.6 176 7-200 39-219 (227)
4 3e0h_A Uncharacterized protein 98.6 2.8E-06 9.6E-11 64.8 14.9 146 23-200 8-156 (158)
5 1jyh_A DNA gyrase inhibitory p 98.5 3.6E-07 1.2E-11 67.8 8.8 150 23-200 2-153 (157)
6 1r8e_A Multidrug-efflux transp 97.6 0.0047 1.6E-07 51.1 16.7 153 21-200 121-277 (278)
7 3b49_A LIN2189 protein; BIG 86 97.5 0.0034 1.2E-07 50.3 14.6 165 22-200 23-211 (211)
8 3lur_A Putative bacterial tran 95.8 0.099 3.4E-06 39.4 10.2 72 128-200 85-157 (158)
9 1d5y_A ROB transcription facto 94.7 0.16 5.3E-06 41.7 8.9 71 128-200 210-286 (292)
10 3gk6_A Integron cassette prote 94.3 0.69 2.3E-05 35.5 11.3 66 128-200 103-170 (170)
11 3e0h_A Uncharacterized protein 91.7 1.1 3.6E-05 33.2 8.7 68 129-199 8-77 (158)
12 3b49_A LIN2189 protein; BIG 86 85.7 3 0.0001 32.8 7.7 59 128-186 23-95 (211)
13 1jyh_A DNA gyrase inhibitory p 81.7 11 0.00038 26.3 8.9 56 129-186 2-57 (157)
14 1r8e_A Multidrug-efflux transp 77.5 3.4 0.00012 33.5 5.3 71 127-199 121-194 (278)
15 1d5y_A ROB transcription facto 52.0 78 0.0027 25.1 8.7 58 128-185 124-185 (292)
16 2q3l_A Uncharacterized protein 34.1 71 0.0024 22.8 5.1 42 129-170 10-51 (126)
17 2ook_A Hypothetical protein; s 29.3 1.2E+02 0.0039 21.6 5.6 39 129-167 10-48 (127)
No 1
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=2.2e-56 Score=369.38 Aligned_cols=175 Identities=30% Similarity=0.459 Sum_probs=161.9
Q ss_pred CccCCCCeEEEee----CCCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEec
Q 028987 8 ISVETPKYEVIQS----TFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKS 83 (200)
Q Consensus 8 ~~~e~P~y~vl~~----~~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~ 83 (200)
.++|||+|+||++ .++||||+|++++||||++.+++++.|...||++|++||+ |+|.++.+|+||+||++++
T Consensus 21 ~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~----G~N~~~~kI~MTaPV~t~~ 96 (212)
T 3r8j_A 21 QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQ----GKNEKEMKIKMTAPVTSYV 96 (212)
T ss_dssp -CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHT----TCBTTCCCCCCBSCEEEEE
T ss_pred CCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhh----cCCCCCCccccccCEEEEE
Confidence 3789999999999 8999999999999999999988899999999999999998 7899999999999999998
Q ss_pred CCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHH
Q 028987 84 SPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK 163 (200)
Q Consensus 84 ~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~ 163 (200)
.++. .| .+.+.++|+|+||.+|| ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|++
T Consensus 97 ~p~~------~~-----~~~~~~tvsF~lP~~~q--~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~ 163 (212)
T 3r8j_A 97 EPGS------GP-----FSESTITISLYIPSEQQ--FDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLAS 163 (212)
T ss_dssp ECTT------ST-----TSCEEEEEEEECCHHHH--SSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred ecCC------Cc-----ccCceEEEEEEcChHHc--cCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 5432 22 23678999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987 164 SLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIPVE 200 (200)
Q Consensus 164 ~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~v~ 200 (200)
+|+++|+.+.+. |++|+||+||++ |+|||||||..+
T Consensus 164 ~L~~~g~~~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~ 200 (212)
T 3r8j_A 164 ILREDGKVFDEKVYYTAGYNSPVKL-LNRNNEVWLIQK 200 (212)
T ss_dssp HHHHTTCCBCSSCEEEEESSSSSCC-SSSCEEEEEEBC
T ss_pred HHHhCCCccCCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence 999999999775 699999999997 999999999864
No 2
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=2.5e-56 Score=365.09 Aligned_cols=174 Identities=27% Similarity=0.351 Sum_probs=160.3
Q ss_pred CccCCCCeEEEeeCCC----eEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEec
Q 028987 8 ISVETPKYEVIQSTFD----YEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKS 83 (200)
Q Consensus 8 ~~~e~P~y~vl~~~~~----yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~ 83 (200)
.+.|||+|+||++.++ ||||+|++++||||++.++++++|...||++|++||+ |+|..+++|+||+||++++
T Consensus 16 ~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~~~A~~~gF~~L~~YI~----G~N~~~~kI~MTaPV~~~~ 91 (195)
T 2gov_A 16 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVG----GTNDKGVGMGMTVPVSFAV 91 (195)
T ss_dssp CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHH----TCBTTCCCCCCCCCEEEEE
T ss_pred CCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCChhHHHHHHHHHHHHHhc----cCCCCCCCcccccCEEEEE
Confidence 3689999999999877 9999999999999999998899999999999999998 7899999999999999987
Q ss_pred CCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHH
Q 028987 84 SPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK 163 (200)
Q Consensus 84 ~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~ 163 (200)
.++. .| .|.+.|+|+|+||++|| ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|++
T Consensus 92 ~p~~------~~-----~~~~~~tvsF~lP~~~~--~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~ 158 (195)
T 2gov_A 92 FPNE------DG-----SLQKKLKVWFRIPNQFQ--GSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRT 158 (195)
T ss_dssp EECT------TS-----CEEEEEEEEECCCHHHH--HSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCC------CC-----CcCceEEEEEEcchhcc--cCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHH
Confidence 4321 22 23568999999999999 78999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEEe
Q 028987 164 SLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIPV 199 (200)
Q Consensus 164 ~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~v 199 (200)
+|+++|+.+.+. |++|+|||||++ ++|||||||..
T Consensus 159 ~L~~~g~~~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~ 194 (195)
T 2gov_A 159 TLEGTPATYQGDVYYCAGYDPPMKP-YGRRNEVWLVK 194 (195)
T ss_dssp HTTTSSCCEEEEEEEEEESSCCSSS-SCCEEEEEEEE
T ss_pred HHHHCCCcccCCcEEEEEeCCCCCc-CCceeEEEEEe
Confidence 999999988765 799999999998 99999999975
No 3
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.9e-56 Score=370.93 Aligned_cols=176 Identities=30% Similarity=0.455 Sum_probs=156.7
Q ss_pred cCccCCCCeEEEee----CCCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEe
Q 028987 7 KISVETPKYEVIQS----TFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITK 82 (200)
Q Consensus 7 ~~~~e~P~y~vl~~----~~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~ 82 (200)
..++|||+|+||++ .++||||+|++++||||++.++++++|...||++|++||+ |+|.++.+|+||+||+++
T Consensus 39 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~----G~N~~~~kI~MTaPV~t~ 114 (227)
T 4b0y_A 39 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQ----GKNEKEMKIKMTAPVTSY 114 (227)
T ss_dssp --CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHH----TCBTTCCCCCCBSCEEEE
T ss_pred cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhh----cCCCCCCccccccCEEEE
Confidence 35789999999999 8999999999999999999988899999999999999998 789999999999999999
Q ss_pred cCCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH
Q 028987 83 SSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK 162 (200)
Q Consensus 83 ~~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~ 162 (200)
+.++. .| .+.+.++|+|+||.+|| ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|+
T Consensus 115 ~~p~~------~~-----~~~~~~tvsF~lP~~~q--~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~ 181 (227)
T 4b0y_A 115 VEPGS------GP-----FSESTITISLYIPSEQQ--FDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLA 181 (227)
T ss_dssp EECCC-------------CCCEEEEEEEECCGGGS--SSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EecCC------Cc-----ccCceEEEEEEcChhhc--cCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHH
Confidence 75432 12 23678999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987 163 KSLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIPVE 200 (200)
Q Consensus 163 ~~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~v~ 200 (200)
++|+++|+.+.+. |++|+||+||++ |+|||||||..+
T Consensus 182 ~~L~~~g~~~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~ 219 (227)
T 4b0y_A 182 SILREDGKVFDEKVYYTAGYNSPVKL-LNRNNEVWLIQK 219 (227)
T ss_dssp HHHHHHTCCBCSSCEEEEECC---CC-CSSCEEEEEEBC
T ss_pred HHHHhCCCccCCCcEEEEEeCCCCCc-CCceeEEEEEEC
Confidence 9999999999775 699999999997 999999999864
No 4
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.57 E-value=2.8e-06 Score=64.82 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=101.0
Q ss_pred CeEEEEeCCceEEEEEeCCCCc--cCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceecc
Q 028987 23 DYEIRKYAPSVVAEVTYDPSTF--KGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKS 100 (200)
Q Consensus 23 ~yEvR~Y~~~~wa~t~~~~~~~--~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~ 100 (200)
+++|+..++...|.....+..- ......+|.+|+.++. .+| +..+.|.+..... .+
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~----~~~-----l~~~g~~~~iy~d--------~~----- 65 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLA----GQG-----KSPSGPPFARYFG--------MS----- 65 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHH----HTT-----CCCSSCCEEEEES--------CT-----
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHH----HcC-----CCCCCCeEEEEec--------CC-----
Confidence 6789999999999888765421 1122367889999995 222 3344554443321 01
Q ss_pred CCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEE
Q 028987 101 DEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLAR 180 (200)
Q Consensus 101 ~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~ 180 (200)
+++-.+.+++-++... +.+..|.+..+|+.++++.++.|...+ +.+.-.+|.+||.++|+...+..+-..
T Consensus 66 ~~~~~~~~~~~v~~~~--------~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~~~~~~E~Y 135 (158)
T 3e0h_A 66 AGTFEVEFGFPVEGGV--------EGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDLSGEAYEIY 135 (158)
T ss_dssp TSCEEEEEEEECCSCC--------CCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CcceEEEEEEEeCCCC--------CCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCcCCCEEEEE
Confidence 1133466666655432 234679999999999999999997653 778888999999999998886555556
Q ss_pred eCCCCC-CCCCCeeeEEEEeC
Q 028987 181 YNPPWT-LPPFRTNEVMIPVE 200 (200)
Q Consensus 181 Yd~P~~-~p~~R~NEV~i~v~ 200 (200)
+|.|.. .+-..+.||||+|+
T Consensus 136 ~~~p~~~~~~~~~tei~ipv~ 156 (158)
T 3e0h_A 136 LDNPAETAPDQLRTRVSLMLH 156 (158)
T ss_dssp CSCTTSSCGGGCEEEEEEEEC
T ss_pred eCCCCCCCHHHhEEEEEEEEc
Confidence 788874 44677999999985
No 5
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.54 E-value=3.6e-07 Score=67.83 Aligned_cols=150 Identities=18% Similarity=0.223 Sum_probs=99.4
Q ss_pred CeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCC
Q 028987 23 DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDE 102 (200)
Q Consensus 23 ~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~ 102 (200)
+++|+..++...+.....+. +......+|.+|+.++. .+| +.. .+.+.-.. ..|..+. ..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~-~~~~i~~~~~~l~~~~~----~~~-----~~~-~~~~gi~~--------~~~~~~~-~~ 61 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVD----SKN-----IVP-KEWVAVYY--------DNPDETP-AE 61 (157)
T ss_dssp CCEEEEECCEEEEEEEEESC-HHHHHHHHHHHHHHHHH----HTT-----CCC-SEEEEEEC--------SCTTTSC-GG
T ss_pred CCEEEEeCCeEEEEEEEECC-chhhHHHHHHHHHHHHH----HcC-----CCC-CcEEEEEC--------CCCCCCC-HH
Confidence 47899999999998877653 22245678999999995 222 111 13332221 1121100 11
Q ss_pred CeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEe
Q 028987 103 KKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARY 181 (200)
Q Consensus 103 ~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Y 181 (200)
.-.+.+++.+|.... +| |.++.+.+..+|+.+++|..|.|... .+.+.-.+|. +||.++|+...+.+.+-.|
T Consensus 62 ~~~~~~~~~v~~~~~----~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~~~~~~~~E~Y 134 (157)
T 1jyh_A 62 KLRCDTVVTVPGYFT----LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEMLPKPCFEVY 134 (157)
T ss_dssp GCEEEEEEEECTTCC----CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEECSSCEEEEE
T ss_pred HheEEEEEEecCccc----cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCccCCCceEEEe
Confidence 335788888887543 22 44677999999999999999999763 3566777775 9999999988875556667
Q ss_pred C-CCCCCCCCCeeeEEEEeC
Q 028987 182 N-PPWTLPPFRTNEVMIPVE 200 (200)
Q Consensus 182 d-~P~~~p~~R~NEV~i~v~ 200 (200)
. .|.. +-..+.||||+|+
T Consensus 135 ~~~~~~-~~~~~tei~ipi~ 153 (157)
T 1jyh_A 135 LNNGAE-DGYWDIEMYVAVQ 153 (157)
T ss_dssp CSCHHH-HSSEEEEEEEEEE
T ss_pred cCCCCC-cccEEEEEEEEee
Confidence 3 2323 3456779999984
No 6
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=97.59 E-value=0.0047 Score=51.12 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=97.1
Q ss_pred CCCeEEEEeCCceEEEEEeCCCCccCch-hhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceec
Q 028987 21 TFDYEIRKYAPSVVAEVTYDPSTFKGNK-DGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTK 99 (200)
Q Consensus 21 ~~~yEvR~Y~~~~wa~t~~~~~~~~~a~-~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~ 99 (200)
..+++|+..++...+......... ... ...|.+|..++. .+ .+..+.|+....... +. ..
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~-~~i~~~~~~~l~~~~~-----~~----~l~~~~~~g~~~~~~--------~~-~~ 181 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP-ENVLNASYSKLKKFIE-----SA----DGFTNNSYGATFSFQ--------PY-TS 181 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT-TTCCGGGGHHHHHHHH-----HH----HSSCCCCEEEEECCC--------CC-SC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh-HhHHHHHHHHHHHHHH-----Hc----CCcccCceEEEEEhH--------Hh-hc
Confidence 357899999999988876622222 334 578999999995 22 134455765443211 00 00
Q ss_pred cCCCeeE-EEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEE
Q 028987 100 SDEKKMV-TMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLL 178 (200)
Q Consensus 100 ~~~~~~~-tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~ 178 (200)
++ ...+ .+++.++... .|.|.+..|.+..+|+..+++..+.|.. ..+.+....|.+||.++|+...+..+-
T Consensus 182 ~~-~~~~~~~~v~v~~~~-----~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~~g~~~E 253 (278)
T 1r8e_A 182 ID-EMTYRHIFTPVLTNK-----QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTVVSDVYE 253 (278)
T ss_dssp GG-GCCCSEEEEECCCCS-----CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CC-CcceeEEEEEecCcc-----ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCccCCCeEE
Confidence 00 1111 2444443321 1223456799999999999999999965 446777788889999999988776555
Q ss_pred EEeCCCCCC--CCCCeeeEEEEeC
Q 028987 179 ARYNPPWTL--PPFRTNEVMIPVE 200 (200)
Q Consensus 179 a~Yd~P~~~--p~~R~NEV~i~v~ 200 (200)
-.++.|+.. +-.-.-||||+|+
T Consensus 254 ~y~~~~~~~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 254 LIIPIHYSPKKQEEYRVEMKIRIA 277 (278)
T ss_dssp EEEESCCCSSSCCCEEEEEEEEEC
T ss_pred EEeecccccCChhheEEEEEEEec
Confidence 566666653 2345679999985
No 7
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=97.53 E-value=0.0034 Score=50.31 Aligned_cols=165 Identities=14% Similarity=0.025 Sum_probs=100.7
Q ss_pred CCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhh------cccCCCCCCCCCc-ccCCC-CeEEecCCchhhhhcc
Q 028987 22 FDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYI------GALGNPQNTKPEK-IAMTA-PVITKSSPEEEKIAMT 93 (200)
Q Consensus 22 ~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI------~~~g~G~N~~~~~-i~MT~-PV~~~~~~~~~~~~mt 93 (200)
.+++|+.-++...+.....+.....+...+|.+|+..+ . .++..... -+.+. |...-...+
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~----~~~~~~~g~~~y~v~~~~gi~~~d------- 91 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSK----MGETRLDGYSDFVVPPLEGFWWSE------- 91 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGG----GSCCTTTTSCCBCCCCCEEEEEES-------
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCCccceeccceeEEeecC-------
Confidence 36888999999999888776543235568899999887 4 11111111 11111 332221101
Q ss_pred CCceeccCCCeeEEEEEEeecCccCcc-----------CCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH
Q 028987 94 APVVTKSDEKKMVTMQFVLPEKYQKAE-----------EAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK 162 (200)
Q Consensus 94 ~pv~~~~~~~~~~tmsF~lP~~~~~~~-----------~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~ 162 (200)
.|.......+-.|.+++-+|.... .+ ..|.+....|.+..+|+..+++..+.|... .+.+-..+|.
T Consensus 92 ~~~~~~~~~~~~~~~~i~vp~~v~-~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~ 168 (211)
T 3b49_A 92 GKFDLKDRDAWLWTSILRQPDFVT-EEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMH 168 (211)
T ss_dssp SSCCTTCGGGEEEEEEEEECTTCC-HHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHH
T ss_pred CccccCchhheEEEEEEEcCCccc-HHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHH
Confidence 111000011346888888886432 00 023333567999999999999999999765 3667778888
Q ss_pred HHHHhCCC-eee---CcEEEEEeCCCCCC-CCCCeeeEEEEeC
Q 028987 163 KSLEKDGY-KVV---GQFLLARYNPPWTL-PPFRTNEVMIPVE 200 (200)
Q Consensus 163 ~~L~~~g~-~~~---~~~~~a~Yd~P~~~-p~~R~NEV~i~v~ 200 (200)
+||.++|+ ... +..+--.++.|... +-.-+-||+|+|+
T Consensus 169 ~wl~~~g~~~~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 169 QFMETEGLRNDTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp HHHHHHTCCBCBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred HHHHHCCCccccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 99999999 554 44455555777643 3334679999985
No 8
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=95.78 E-value=0.099 Score=39.40 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987 128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200 (200)
Q Consensus 128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v~ 200 (200)
+.+....+|+.++||.++.|...+ .+.+--..+. .||-+.|....+.+-+-.|+..-..+-.-.-||||+|+
T Consensus 85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~ 157 (158)
T 3lur_A 85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANTVKSAPFFELYQDGDTTSEKYITEIWMPVK 157 (158)
T ss_dssp GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTTBCSSCEEEEECSSCTTSTTCEEEEEEEEC
T ss_pred CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCeeCCCccEEEECCCCCCCcceEEEEEEEEc
Confidence 468999999999999999996543 4555555554 68999999888766677777643333455679999986
No 9
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=94.67 E-value=0.16 Score=41.74 Aligned_cols=71 Identities=13% Similarity=0.004 Sum_probs=50.4
Q ss_pred CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEeC----CCCCCC-CCCeeeEEEEeC
Q 028987 128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARYN----PPWTLP-PFRTNEVMIPVE 200 (200)
Q Consensus 128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Yd----~P~~~p-~~R~NEV~i~v~ 200 (200)
+.+...++|+.++||..+.|. .+.+.+--..|. +||.+.|+...+.+.+-.|. ++...+ -.-.-||||+|+
T Consensus 210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~~~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iPI~ 286 (292)
T 1d5y_A 210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 286 (292)
T ss_dssp TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEECSSCEEEEECGGGC----CCSCEEEEEEEEEEE
T ss_pred CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCccCCCCcEEEEeeccccCCCCCCCceEEEEEEEee
Confidence 358999999999999999994 456778888886 99999999876654445564 333221 122459999984
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=94.32 E-value=0.69 Score=35.45 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCC--CeeeCcEEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987 128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDG--YKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200 (200)
Q Consensus 128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v~ 200 (200)
+.+...++|+.++||-++.|... +.+.+--..+..||-+.| +.....+-+-.|+.. -.-||||+|+
T Consensus 103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~~~~~pdfE~Y~~~------~~~eI~IpI~ 170 (170)
T 3gk6_A 103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHKRAYTTDFEYYKSA------NTVEISIAVR 170 (170)
T ss_dssp TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCCBCCSEEEEECCSS------SEEEEEEEBC
T ss_pred CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcceecCcCCEEEECCC------CeEEEEEEEC
Confidence 56899999999999999999543 467777777777999998 777777777778653 2779999986
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=91.74 E-value=1.1 Score=33.17 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=48.0
Q ss_pred CeEEEEeCCeEEEEEEecCccCh--HHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCCCCCCCCCCeeeEEEEe
Q 028987 129 RVVIREEGERKYGVVKFGGVASD--EVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPV 199 (200)
Q Consensus 129 ~V~i~~~p~~~v~v~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v 199 (200)
+|.|++.|+.+++.++..|...+ ..+.+.-.+|.+++..+|+...+..+...||- .. -.=+=|+.++|
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~~~g~~~~iy~d~--~~-~~~~~~~~~~v 77 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKSPSGPPFARYFGM--SA-GTFEVEFGFPV 77 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEESC--TT-SCEEEEEEEEC
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecC--CC-cceEEEEEEEe
Confidence 58999999999999999997532 23445667899999999987766555555562 22 23455666665
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=85.72 E-value=3 Score=32.76 Aligned_cols=59 Identities=12% Similarity=-0.029 Sum_probs=45.0
Q ss_pred CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHH------HhCCCeeeC------cE-EEEEe-CCCCC
Q 028987 128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSL------EKDGYKVVG------QF-LLARY-NPPWT 186 (200)
Q Consensus 128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L------~~~g~~~~~------~~-~~a~Y-d~P~~ 186 (200)
-+|.|.++|+..++.++..|.+.+..+.+...+|..++ .++|+...+ .. ...-| |.|+.
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~ 95 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFD 95 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCC
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccc
Confidence 46899999999999999999766557888899999999 888876544 22 33334 77755
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=81.70 E-value=11 Score=26.33 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=40.8
Q ss_pred CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCCCCC
Q 028987 129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWT 186 (200)
Q Consensus 129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~~ 186 (200)
++.|++.|+..++.++..|... ..+.+.-.+|.+++..+++.. +..+...+|.|..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~~-~~~~gi~~~~~~~ 57 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDE 57 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCCC-SEEEEEECSCTTT
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCCC-CcEEEEECCCCCC
Confidence 4789999999999888887542 456677788999998888764 3334455666653
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=77.53 E-value=3.4 Score=33.51 Aligned_cols=71 Identities=23% Similarity=0.120 Sum_probs=46.9
Q ss_pred CCCeEEEEeCCeEEEEEEe-cCccChHHH-HHHHHHHHHHHHhCCCeeeCcEEEEEeCCCCCCCCCCee-eEEEEe
Q 028987 127 DERVVIREEGERKYGVVKF-GGVASDEVV-GEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTN-EVMIPV 199 (200)
Q Consensus 127 d~~V~i~~~p~~~v~v~~F-~G~~~~~~~-~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~~~p~~R~N-EV~i~v 199 (200)
..+|.|.+.|+..++..+. .|.. ..+ .+...+|.+++.++|+...+.+.+..+|++++..-.+.. ++.++|
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~v 194 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGFTNNSYGATFSFQPYTSIDEMTYRHIFTPV 194 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSSCCCCEEEEECCCCCSCGGGCCCSEEEEEC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCcccCceEEEEEhHHhhcCCCcceeEEEEEe
Confidence 4569999999999998888 5533 222 344567889998888766665655556666664222332 577765
No 15
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=51.98 E-value=78 Score=25.12 Aligned_cols=58 Identities=9% Similarity=-0.120 Sum_probs=39.0
Q ss_pred CCeEEEEeCCeEEEEEEecCccChHHHH----HHHHHHHHHHHhCCCeeeCcEEEEEeCCCC
Q 028987 128 ERVVIREEGERKYGVVKFGGVASDEVVG----EKVDKLKKSLEKDGYKVVGQFLLARYNPPW 185 (200)
Q Consensus 128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~----~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~ 185 (200)
.++.|.+.|+..++.++..|...+..+. .....|.+.|...+....+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSCCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCCCCCCEEEEEecCCC
Confidence 4699999999999999999865543332 455667776665443334455666676664
No 16
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=34.08 E-value=71 Score=22.76 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=35.6
Q ss_pred CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCC
Q 028987 129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGY 170 (200)
Q Consensus 129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~ 170 (200)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++.+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 467777778888999999999999999988888888888765
No 17
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=29.25 E-value=1.2e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=33.3
Q ss_pred CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHh
Q 028987 129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEK 167 (200)
Q Consensus 129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~ 167 (200)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 366666777888899999999999999888888888988
Done!