Query 028988
Match_columns 200
No_of_seqs 208 out of 1391
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13474 cytochrome b6-f compl 100.0 1.2E-34 2.6E-39 240.7 13.2 145 56-200 5-149 (178)
2 KOG1671 Ubiquinol cytochrome c 99.9 8.4E-28 1.8E-32 201.6 9.9 192 1-200 2-196 (210)
3 TIGR01416 Rieske_proteo ubiqui 99.9 2.6E-26 5.6E-31 190.2 10.4 134 64-200 1-160 (174)
4 TIGR03171 soxL2 Rieske iron-su 99.9 3.9E-26 8.5E-31 203.5 8.6 136 60-199 58-260 (321)
5 COG0723 QcrA Rieske Fe-S prote 99.9 1.4E-25 3E-30 184.8 8.5 140 59-200 5-152 (177)
6 cd03471 Rieske_cytochrome_b6f 99.9 1.3E-22 2.8E-27 160.7 8.2 95 106-200 3-97 (126)
7 cd03470 Rieske_cytochrome_bc1 99.8 3.9E-19 8.5E-24 140.4 7.2 53 146-200 59-112 (126)
8 cd03477 Rieske_YhfW_C YhfW fam 99.7 3.7E-17 8.1E-22 122.1 7.3 65 134-200 18-82 (91)
9 PF00355 Rieske: Rieske [2Fe-2 99.7 2.1E-16 4.5E-21 116.9 6.3 62 136-199 23-88 (97)
10 cd03476 Rieske_ArOX_small Smal 99.6 4.3E-16 9.3E-21 123.1 7.8 62 137-200 27-99 (126)
11 cd03478 Rieske_AIFL_N AIFL (ap 99.6 6.7E-16 1.5E-20 114.6 6.7 64 134-200 19-84 (95)
12 cd03528 Rieske_RO_ferredoxin R 99.6 9.3E-16 2E-20 113.7 6.0 64 134-200 20-85 (98)
13 TIGR02694 arsenite_ox_S arseni 99.6 2.6E-15 5.7E-20 119.3 7.8 54 145-200 47-102 (129)
14 TIGR02377 MocE_fam_FeS Rieske 99.6 4E-15 8.6E-20 112.4 6.6 65 134-200 21-87 (101)
15 cd03467 Rieske Rieske domain; 99.6 5.8E-15 1.3E-19 109.6 7.0 64 135-200 21-86 (98)
16 cd03530 Rieske_NirD_small_Baci 99.5 1E-14 2.2E-19 108.6 6.7 64 134-200 20-85 (98)
17 cd03469 Rieske_RO_Alpha_N Ries 99.5 1E-14 2.2E-19 111.3 6.7 62 134-197 21-84 (118)
18 cd03475 Rieske_SoxF_SoxL SoxF 99.5 7E-15 1.5E-19 121.9 5.7 53 146-200 74-144 (171)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.5 2.4E-14 5.2E-19 113.0 5.9 61 134-196 29-91 (128)
20 cd03474 Rieske_T4moC Toluene-4 99.5 4.7E-14 1E-18 106.9 6.6 63 135-200 21-85 (108)
21 PRK09965 3-phenylpropionate di 99.5 5.2E-14 1.1E-18 107.0 5.9 61 137-200 24-87 (106)
22 cd03541 Rieske_RO_Alpha_CMO Ri 99.5 9.4E-14 2E-18 108.4 7.4 65 133-199 21-86 (118)
23 cd03479 Rieske_RO_Alpha_PhDO_l 99.5 1.6E-13 3.4E-18 110.0 7.1 62 133-196 41-103 (144)
24 cd03532 Rieske_RO_Alpha_VanA_D 99.5 1.9E-13 4.2E-18 105.4 7.2 61 133-195 23-84 (116)
25 cd04337 Rieske_RO_Alpha_Cao Ca 99.4 1.9E-13 4.2E-18 107.9 7.1 63 132-196 35-98 (129)
26 cd03531 Rieske_RO_Alpha_KSH Th 99.4 2.5E-13 5.5E-18 104.9 7.4 59 134-194 21-80 (115)
27 cd03535 Rieske_RO_Alpha_NDO Ri 99.4 2.5E-13 5.4E-18 106.1 6.7 61 134-196 23-85 (123)
28 cd03536 Rieske_RO_Alpha_DTDO T 99.4 2.8E-13 6.2E-18 105.8 6.8 62 134-197 21-84 (123)
29 cd04338 Rieske_RO_Alpha_Tic55 99.4 4.7E-13 1E-17 106.2 6.6 61 132-194 35-96 (134)
30 cd03542 Rieske_RO_Alpha_HBDO R 99.4 6.7E-13 1.5E-17 104.2 6.8 59 134-194 21-81 (123)
31 cd03538 Rieske_RO_Alpha_AntDO 99.4 8.7E-13 1.9E-17 106.2 6.6 63 132-196 41-106 (146)
32 cd03545 Rieske_RO_Alpha_OHBDO_ 99.4 1.3E-12 2.9E-17 105.7 6.6 63 133-197 45-109 (150)
33 COG2146 {NirD} Ferredoxin subu 99.3 1.4E-12 3.1E-17 100.1 5.9 56 139-196 29-87 (106)
34 cd03537 Rieske_RO_Alpha_PrnD T 99.3 2.3E-12 4.9E-17 101.5 6.4 60 133-194 21-81 (123)
35 cd03473 Rieske_CMP_Neu5Ac_hydr 99.3 2.5E-12 5.3E-17 99.5 6.4 61 135-198 29-93 (107)
36 cd03480 Rieske_RO_Alpha_PaO Ri 99.3 3.4E-12 7.3E-17 101.8 7.2 61 132-194 35-98 (138)
37 cd03529 Rieske_NirD Assimilato 99.3 3.2E-12 6.9E-17 96.5 6.1 63 134-199 20-89 (103)
38 cd03539 Rieske_RO_Alpha_S5H Th 99.3 3.8E-12 8.1E-17 100.6 6.3 62 134-197 21-84 (129)
39 TIGR02378 nirD_assim_sml nitri 99.3 3.7E-12 8E-17 96.2 5.5 63 134-199 21-90 (105)
40 cd03548 Rieske_RO_Alpha_OMO_CA 99.3 1.3E-11 2.9E-16 97.9 6.8 57 133-192 33-93 (136)
41 PRK09511 nirD nitrite reductas 99.2 2.2E-11 4.9E-16 93.5 5.8 64 134-200 23-94 (108)
42 PF08802 CytB6-F_Fe-S: Cytochr 99.2 5.7E-12 1.2E-16 81.0 1.8 39 58-96 1-39 (39)
43 PLN00095 chlorophyllide a oxyg 99.1 1.1E-10 2.3E-15 107.5 6.7 63 131-195 90-153 (394)
44 PLN02281 chlorophyllide a oxyg 99.1 1.4E-10 3.1E-15 110.4 6.8 62 133-196 239-301 (536)
45 TIGR03229 benzo_1_2_benA benzo 99.1 2.6E-10 5.7E-15 106.5 7.0 71 123-195 47-120 (433)
46 TIGR03228 anthran_1_2_A anthra 99.0 6.6E-10 1.4E-14 104.0 6.1 71 123-195 47-120 (438)
47 PF13806 Rieske_2: Rieske-like 99.0 4.7E-10 1E-14 85.8 3.4 64 133-199 20-90 (104)
48 PLN02518 pheophorbide a oxygen 98.9 1.9E-09 4.1E-14 103.2 6.4 61 132-194 108-171 (539)
49 COG4638 HcaE Phenylpropionate 98.8 5.3E-09 1.1E-13 94.2 6.7 63 130-194 43-107 (367)
50 PF10399 UCR_Fe-S_N: Ubiquitin 98.5 9.7E-08 2.1E-12 62.1 2.5 38 58-95 4-41 (41)
51 TIGR02811 formate_TAT formate 95.9 0.011 2.5E-07 42.0 3.9 24 59-82 5-28 (66)
52 PF10518 TAT_signal: TAT (twin 95.7 0.012 2.5E-07 34.6 2.5 16 63-78 2-17 (26)
53 TIGR01409 TAT_signal_seq Tat ( 93.8 0.051 1.1E-06 32.4 2.0 18 63-80 1-18 (29)
54 PRK09898 hypothetical protein; 86.6 0.33 7.1E-06 41.0 1.2 26 62-87 12-37 (208)
55 PRK09476 napG quinol dehydroge 77.0 2.9 6.3E-05 36.7 3.6 26 60-85 6-31 (254)
56 PRK14993 tetrathionate reducta 74.9 3 6.5E-05 36.4 3.1 16 62-77 2-17 (244)
57 PRK14990 anaerobic dimethyl su 74.3 3.1 6.8E-05 41.7 3.5 25 53-77 3-28 (814)
58 PRK10882 hydrogenase 2 protein 70.0 3.4 7.5E-05 37.7 2.4 12 63-74 1-12 (328)
59 PRK10468 hydrogenase 2 small s 63.4 4.5 9.7E-05 37.8 1.8 27 61-87 11-37 (371)
60 TIGR00391 hydA hydrogenase (Ni 63.1 4.5 9.7E-05 37.7 1.8 20 62-81 14-33 (365)
61 TIGR01412 tat_substr_1 Tat-tra 57.8 9.8 0.00021 36.0 3.1 20 59-78 4-23 (414)
62 TIGR02166 dmsA_ynfE anaerobic 56.2 9.5 0.00021 38.0 2.9 12 63-74 1-12 (797)
63 PRK15488 thiosulfate reductase 52.2 11 0.00024 37.5 2.6 16 62-77 2-17 (759)
64 PF03935 SKN1: Beta-glucan syn 47.5 45 0.00098 32.5 5.8 32 63-94 37-70 (504)
65 PRK02888 nitrous-oxide reducta 45.1 24 0.00052 35.3 3.6 18 58-75 4-21 (635)
66 PRK15102 trimethylamine N-oxid 44.1 15 0.00032 37.1 2.1 13 63-75 1-13 (825)
67 TIGR03396 PC_PLC phospholipase 41.9 17 0.00037 36.6 2.1 26 63-89 1-26 (690)
68 PF12318 FAD-SLDH: Membrane bo 41.9 27 0.00059 28.8 3.0 8 62-69 1-8 (168)
69 PF05265 DUF723: Protein of un 41.6 17 0.00037 25.6 1.5 15 172-186 31-45 (60)
70 TIGR01553 formate-DH-alph form 41.1 24 0.00051 37.0 3.0 16 63-78 2-17 (1009)
71 COG0375 HybF Zn finger protein 40.5 14 0.00031 29.1 1.1 30 157-188 72-103 (115)
72 TIGR00397 mauM_napG MauM/NapG 38.5 35 0.00076 29.1 3.2 21 63-83 2-22 (213)
73 PRK13532 nitrate reductase cat 37.1 25 0.00054 35.6 2.4 16 62-77 2-17 (830)
74 cd02764 MopB_PHLH The MopB_PHL 36.3 24 0.00051 33.5 2.0 17 65-81 1-17 (524)
75 TIGR01706 NAPA periplasmic nit 36.1 28 0.00061 35.3 2.6 16 63-78 2-17 (830)
76 PRK13747 putative mercury resi 35.8 11 0.00024 27.6 -0.2 9 172-180 24-32 (78)
77 COG1740 HyaA Ni,Fe-hydrogenase 35.7 21 0.00046 33.1 1.5 21 62-82 12-32 (355)
78 TIGR02659 TTQ_MADH_Lt methylam 35.5 26 0.00056 29.8 1.9 27 63-90 22-48 (186)
79 TIGR03149 cyt_nit_nrfC cytochr 34.9 37 0.0008 29.0 2.8 11 63-73 2-12 (225)
80 PF05052 MerE: MerE protein; 30.2 16 0.00034 26.7 -0.2 9 173-181 25-33 (75)
81 TIGR02164 torA trimethylamine- 29.9 39 0.00085 34.1 2.5 15 63-77 1-15 (822)
82 PF07282 OrfB_Zn_ribbon: Putat 29.3 54 0.0012 22.4 2.4 32 154-185 27-58 (69)
83 PRK00420 hypothetical protein; 29.0 46 0.001 26.0 2.2 33 154-187 22-55 (112)
84 KOG1671 Ubiquinol cytochrome c 28.7 8 0.00017 33.4 -2.2 78 62-148 42-119 (210)
85 PF09740 DUF2043: Uncharacteri 27.7 26 0.00055 27.5 0.6 20 171-190 85-106 (110)
86 PRK07474 sulfur oxidation prot 25.0 82 0.0018 25.9 3.1 16 60-75 5-20 (154)
87 PRK05363 TMAO/DMSO reductase; 24.8 53 0.0011 30.2 2.1 15 63-77 21-35 (319)
88 PF14235 DUF4337: Domain of un 24.2 68 0.0015 26.3 2.5 23 63-85 132-154 (157)
89 COG1645 Uncharacterized Zn-fin 23.6 63 0.0014 26.0 2.2 30 154-185 27-56 (131)
90 PF05570 DUF765: Circovirus pr 22.8 45 0.00096 19.8 0.8 16 1-17 1-16 (29)
91 cd03271 ABC_UvrA_II The excisi 21.8 32 0.0007 30.2 0.2 13 173-185 100-113 (261)
92 TIGR03479 DMSO_red_II_alp DMSO 21.8 55 0.0012 33.6 1.9 16 65-80 1-16 (912)
93 PRK13669 hypothetical protein; 21.6 22 0.00048 26.2 -0.8 24 175-198 39-64 (78)
94 COG3490 Uncharacterized protei 21.6 48 0.001 30.6 1.2 22 60-81 3-24 (366)
95 PRK08572 rps17p 30S ribosomal 20.8 38 0.00082 26.4 0.3 17 175-192 18-34 (108)
96 COG0473 LeuB Isocitrate/isopro 20.6 44 0.00095 31.1 0.8 22 172-193 266-287 (348)
No 1
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=240.74 Aligned_cols=145 Identities=65% Similarity=1.110 Sum_probs=129.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccC
Q 028988 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 135 (200)
Q Consensus 56 ~~~~~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~ 135 (200)
..+++||++||+||+.+++++++++++++++|+++|+.||....+.++.+.+|.+|++|..++|+.++.++++.+.+...
T Consensus 5 ~~~~~~d~~RR~FL~~~~~~~gg~~a~~~~~P~v~~~~Pp~~~~~~g~~~a~d~~G~~I~~s~~~~~~~~g~~~~v~~~~ 84 (178)
T PRK13474 5 GSSDVPSMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPSAGGAGGGTTAKDELGNDIPASQFLATHPAGDRSLVQGLK 84 (178)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhheeCChhHccCCCcceeecccCCeeehhhccccCCCCCcEEEEEcC
Confidence 45789999999999999999999999999999999999998877777788899999999999998887777766655667
Q ss_pred CCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 136 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 136 g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
+++.+++++.++++.+||++++|||+||++.|+..++.|.||||||+||.+|+++.||++++|++
T Consensus 85 g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~~~~~CP~Hgs~Fd~tG~~~~gPa~~~L~~ 149 (178)
T PRK13474 85 GDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGENKFQCPCHGSQYDATGKVVRGPAPLSLAL 149 (178)
T ss_pred CCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCCCEEEecCcCCEECCCCCCccCCCCCCCCe
Confidence 88888888888998778999999999999999877789999999999999999999999999974
No 2
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=99.95 E-value=8.4e-28 Score=201.62 Aligned_cols=192 Identities=26% Similarity=0.335 Sum_probs=162.1
Q ss_pred CCCCCCCCCCCcccccccCCCCCcccccccccccc--ccccccCCCcceeeeecccCCCCCCCCcchHHHHHHHHHHHhH
Q 028988 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPAR--TQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVS 78 (200)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pd~~RR~FL~~~~~G~~a 78 (200)
|+| +++|....+||-++..-+..|.-...+++.. .++.++++|+..+.||...+.++..++++-+-+......++.+
T Consensus 2 ~~s-~s~~~~~s~~l~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~k~~~sy~~~g~~~~~~a~~ak~~v~~fi~smsAsa 80 (210)
T KOG1671|consen 2 MSS-SSLSRVLSTGLGSSHTDLMVPDFSDYRRESVKDHQDTGEERKGFRSYLMVGAGAAGRAYAAKNLVTTFISSMSASA 80 (210)
T ss_pred ccc-cccchhhccccccccccccCCCchhhhchhhhccccchhhhhceeeEEEecccceeehhhhhhhHHHHHHHhhhhh
Confidence 344 6677755679999999999999999998776 4567888778999999999999999999888887777788888
Q ss_pred HHHHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccCCCCeEEEEecCCceeEEEEeccC
Q 028988 79 LPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVC 158 (200)
Q Consensus 79 l~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~p~~lv~~~~g~~~~~A~s~vC 158 (200)
-..+.+.+++.-+.+|+ +.++.++-.|+++....|.+.++++++++.+...++|. ...+...+..++.+.+||
T Consensus 81 dvlA~akiei~l~~IPe------Gk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq-~d~~rvk~~ewl~~igVC 153 (210)
T KOG1671|consen 81 DVLAMAKIEIKLSDIPE------GKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQ-DDVDRVKKPEWLVVIGVC 153 (210)
T ss_pred hhhhheeeeeeeecCCC------CCCcceeccCCceEEeeccccccccccccchhhccCch-hhhhhccCcceEEEEeee
Confidence 88888889999888987 45667777889998889999999999999988888988 433334455567899999
Q ss_pred CCCCccCCCCCCC-CeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 159 THLGCVVPWNSAE-NKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 159 THlGC~l~~~~~~-~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
|||||.+.|+.++ +.|+||||||+||..|++.+||||.+|..
T Consensus 154 ThLGCVp~~~AGd~gg~~CPCHGSHYdasGRIrkGPAPlnlev 196 (210)
T KOG1671|consen 154 THLGCVPIANAGDYGGYYCPCHGSHYDASGRIRKGPAPLNLEV 196 (210)
T ss_pred ccccccccccccccCceecccccccccccCceecCCCCCccCC
Confidence 9999999998865 58999999999999999999999999863
No 3
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.93 E-value=2.6e-26 Score=190.21 Aligned_cols=134 Identities=25% Similarity=0.519 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCCCceeec----CCCCceeeecccc------cCCCCC----c-
Q 028988 64 GKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKD----AIGNDIIAADWLN------THGPGD----R- 128 (200)
Q Consensus 64 ~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd----~~g~~i~~~~W~~------~~~P~~----~- 128 (200)
+||+||+.++.++++++++++++|+++++.|.....++++.++++ .+|+.. ...|.. ...+++ .
T Consensus 1 ~RR~fl~~~~~~~~~~~~~~~~~p~v~~~~P~~~~~a~~~~~~v~l~eL~pG~~~-~v~~~GkpI~I~~~t~~~~~~~~~ 79 (174)
T TIGR01416 1 TRRDFLYAATGAVGAVGAAAAAVPFIDSMNPSASVKAAGAPTEVDVSKIQPGQQL-TVEWRGKPVFIRRRTKKEIDALKA 79 (174)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHheeCcchhccccCCcEEEEHHHCCCCCeE-EEEECCeEEEEEeCCHHHhhhhhc
Confidence 599999999999999999999999999998877666554555554 233322 112311 111100 0
Q ss_pred ----ccccccC----CCCeEEEEecCCceeEEEEeccCCCCCccCCCCCC---CCeEEcCCCCeeeCCCCeeccCCCCCC
Q 028988 129 ----TLTEGLK----GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSA---ENKFICPCHGSQYNNQGRVVRGPAPLV 197 (200)
Q Consensus 129 ----~~~~~~~----g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~---~~~~~CPcHGS~Fd~~G~v~~GPAp~p 197 (200)
.+.+.+. -+..++.+..++++ +|++++|||+||.+.|... .+.|+||||||+||.+|+++.|||+++
T Consensus 80 ~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~--~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~~~ 157 (174)
T TIGR01416 80 LDLGALKDPNSEAQQPDYARVKRSGKPEW--LVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAPLN 157 (174)
T ss_pred cchhhcCCCcccccCcchhhhhhccCCcE--EEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCCCC
Confidence 0000000 01122233334555 8999999999999988643 357999999999999999999999999
Q ss_pred CCC
Q 028988 198 SNT 200 (200)
Q Consensus 198 L~~ 200 (200)
|++
T Consensus 158 L~~ 160 (174)
T TIGR01416 158 LPV 160 (174)
T ss_pred CCC
Confidence 974
No 4
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=99.93 E-value=3.9e-26 Score=203.49 Aligned_cols=136 Identities=28% Similarity=0.522 Sum_probs=93.4
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCC--CceeecCCCCceeeecccccCCCCCcccccccCCC
Q 028988 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGG--GTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGD 137 (200)
Q Consensus 60 ~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~--~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~ 137 (200)
.+|++||+||+.+++|++++++ +.++|++++|.||....+++ ..+.+|..|++|+++++.... |....+.....++
T Consensus 58 ~vD~~RR~fL~~al~gAga~a~-~~avPlv~~l~PP~~a~atG~pk~La~D~~GnPIKASdL~vnS-p~~~lfeyPl~gd 135 (321)
T TIGR03171 58 GVDEGRRKFLKGLIFGIAAAAV-VGIIPGLRVLVPPTVAAASGFPKSLLVDSSGNPIKASSIPVNS-PIITIFEYPMTGE 135 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHh-hhhhhheecccCchhhhccCCCceEEecCCCCeeeHHHccCCC-cccccccCcCCCC
Confidence 4589999999999988888554 44689999999987654333 367889999999988863321 1111111111111
Q ss_pred ------------------CeEEEEe-------------cCCceeEEEEeccCCCCCccCCCC------------------
Q 028988 138 ------------------PTYLVVE-------------KDKTLASYGINAVCTHLGCVVPWN------------------ 168 (200)
Q Consensus 138 ------------------p~~lv~~-------------~~g~~~~~A~s~vCTHlGC~l~~~------------------ 168 (200)
|.-|... .++.+ +|+|++|||+||++.+.
T Consensus 136 P~fLIklgka~~~~v~i~p~~v~~~~~g~~y~~pgGVGp~~~I--VAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~ 213 (321)
T TIGR03171 136 PNFLLNLGDSSGKPVEIPPTKVVVPQTGKTYTFPGGVGPNKSI--VAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEP 213 (321)
T ss_pred cHHHHHhhhhcCCceecCccccccCCCCcceeccCCcCCCCCE--EEEecccCcCCCCcchhhccCcccccccccccccc
Confidence 1112111 12334 89999999999998442
Q ss_pred -----------CCC---CeEEcCCCCeeeCC-C-CeeccCCCCCCCC
Q 028988 169 -----------SAE---NKFICPCHGSQYNN-Q-GRVVRGPAPLVSN 199 (200)
Q Consensus 169 -----------~~~---~~~~CPcHGS~Fd~-~-G~v~~GPAp~pL~ 199 (200)
.+. +.|+||||||+||. + |+++.|||++||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA~rpLp 260 (321)
T TIGR03171 214 DQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPTVRPLP 260 (321)
T ss_pred cccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCCCCCCC
Confidence 011 38999999999998 4 5899999999997
No 5
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=99.92 E-value=1.4e-25 Score=184.79 Aligned_cols=140 Identities=32% Similarity=0.598 Sum_probs=95.3
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCCCceeecCCC-Cce--eeecccccCCCCCcccccccC
Q 028988 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIG-NDI--IAADWLNTHGPGDRTLTEGLK 135 (200)
Q Consensus 59 ~~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g-~~i--~~~~W~~~~~P~~~~~~~~~~ 135 (200)
+..+..||+||..++.+.+++++..+++|+..++.|+.....+...++++... +++ ....|... |..........
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~ 82 (177)
T COG0723 5 AATGLSRRDFLVLLTTGVGAVGAGAALYPAVESVDPPAGGGLAGAPIEVDDSGIGPGPLVTVPWRGK--PVFLLRRTEYA 82 (177)
T ss_pred ccccccHHHhhhhhhccccccceeeeeeehhhcccCcccccccCCceeeeccCCccceEEEEecCCC--CeeeEeecccc
Confidence 34567899999999999999888899999999999977664444444444221 221 22334221 11100000112
Q ss_pred CCCeEEEEecCCce---eEEEEeccCCCCCccCCCC--CCCCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 136 GDPTYLVVEKDKTL---ASYGINAVCTHLGCVVPWN--SAENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 136 g~p~~lv~~~~g~~---~~~A~s~vCTHlGC~l~~~--~~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
+......+..++.. .++|++.+||||||++.|+ ...+.|+||||||+||.+|+|++|||++||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~~~L~~ 152 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAPRPLPI 152 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCCCCcCC
Confidence 22233333333222 1469999999999999996 66799999999999999999999999999974
No 6
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.88 E-value=1.3e-22 Score=160.65 Aligned_cols=95 Identities=75% Similarity=1.367 Sum_probs=84.9
Q ss_pred eecCCCCceeeecccccCCCCCcccccccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCC
Q 028988 106 AKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN 185 (200)
Q Consensus 106 ~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~ 185 (200)
.+|++|+||+.+.|+.++.|++..+.+...+++.+++++.++++.+||++++|||+||++.+...++.|.||||||+||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~~~~i~CP~Hg~~Fd~ 82 (126)
T cd03471 3 AKDALGNDIKVSKWLATHNPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDA 82 (126)
T ss_pred cccccCCceeHHHHHhhCCCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCCCCEEEcCCCCCEECC
Confidence 36889999999999999999988777766778888888889988778999999999999998766789999999999999
Q ss_pred CCeeccCCCCCCCCC
Q 028988 186 QGRVVRGPAPLVSNT 200 (200)
Q Consensus 186 ~G~v~~GPAp~pL~~ 200 (200)
+|+++.+|++++|++
T Consensus 83 tG~~~~gPa~~~L~~ 97 (126)
T cd03471 83 TGKVVRGPAPLSLAL 97 (126)
T ss_pred CCCEecCCCCCCCce
Confidence 999999999999863
No 7
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.78 E-value=3.9e-19 Score=140.43 Aligned_cols=53 Identities=42% Similarity=0.941 Sum_probs=47.5
Q ss_pred CCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 146 DKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 146 ~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
++++ ||++++|||+||.+.|.. +.+.|+||||||+||++|+++.|||++||++
T Consensus 59 ~~~~--~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl~G~~~~gPa~~~L~~ 112 (126)
T cd03470 59 KPEW--LVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDASGRIRKGPAPLNLEV 112 (126)
T ss_pred CCcE--EEEeCcCCCCCCeeccccCCCCEEEecCcCCEECCCCeEecCCCCCCCCe
Confidence 3454 899999999999998876 5689999999999999999999999999974
No 8
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.70 E-value=3.7e-17 Score=122.11 Aligned_cols=65 Identities=40% Similarity=0.845 Sum_probs=56.8
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
..+++++|++..+|++ ||++++|||+||.|.++..++.|.||||||+||.+|+++.+|+.++|++
T Consensus 18 ~~g~~v~v~r~~~g~~--~A~~~~CpH~g~~l~~g~~~~~i~CP~Hg~~Fd~~G~~~~~Pa~~~l~~ 82 (91)
T cd03477 18 IGGKRLAVYRDEDGVL--HTVSATCTHLGCIVHWNDAEKSWDCPCHGSRFSYDGEVIEGPAVSGLKP 82 (91)
T ss_pred ECCEEEEEEECCCCCE--EEEcCcCCCCCCCCcccCCCCEEECCCCCCEECCCCcEeeCCCCCCCCe
Confidence 3466777888768877 8999999999999988765679999999999999999999999999864
No 9
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.65 E-value=2.1e-16 Score=116.86 Aligned_cols=62 Identities=32% Similarity=0.693 Sum_probs=51.5
Q ss_pred CCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 136 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 136 g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
++..+++++.++++ +|++++|||+||+|.++. +++.|.|||||++||+ +|+++.+|+..+|+
T Consensus 23 ~~~~v~~~~~~g~~--~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~ 88 (97)
T PF00355_consen 23 GGKLVLVRRSDGEI--YAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVGGPAPRPLP 88 (97)
T ss_dssp TTEEEEEEETTTEE--EEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEESTTCSBST
T ss_pred CCcEEEEEeCCCCE--EEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEecCCCCCCcC
Confidence 44455666778887 899999999999999883 3478999999999999 59999999998775
No 10
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.64 E-value=4.3e-16 Score=123.12 Aligned_cols=62 Identities=34% Similarity=0.750 Sum_probs=53.0
Q ss_pred CCeEEEEec---------CCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCC--CCeeccCCCCCCCCC
Q 028988 137 DPTYLVVEK---------DKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN--QGRVVRGPAPLVSNT 200 (200)
Q Consensus 137 ~p~~lv~~~---------~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~--~G~v~~GPAp~pL~~ 200 (200)
.+++|++.. ++++ +|++++|||+||+|.++.+++.|.||||||+||+ +|+++.||+.++|++
T Consensus 27 ~~i~v~r~~~~~~~~~~~~g~~--~A~~~~CpH~g~~L~~g~~~~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ 99 (126)
T cd03476 27 SPCVLVKLGVPVPGGVGPDNDI--VAFSALCTHMGCPLTYDPSNKTFVCPCHFSQFDPARGGQMVSGQATQNLPQ 99 (126)
T ss_pred CcEEEEECCccccCccccCCEE--EEEeCcCCCCCccccccccCCEEEccCcCCEEeCCCCCeEEcCCCCCCCCe
Confidence 567777753 4665 8999999999999998777789999999999998 479999999999974
No 11
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.63 E-value=6.7e-16 Score=114.56 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=53.6
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
..+.+++|++. +|++ ||++++|||+||+|.++. +++.|.|||||++||+ +|+++.+|+..+|++
T Consensus 19 ~~~~~v~v~r~-~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~ 84 (95)
T cd03478 19 VGDGKVLLVRQ-GGEV--HAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPC 84 (95)
T ss_pred eCCcEEEEEEE-CCEE--EEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccCCcce
Confidence 34566777765 6776 899999999999998764 4689999999999998 999999999888763
No 12
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.61 E-value=9.3e-16 Score=113.73 Aligned_cols=64 Identities=23% Similarity=0.438 Sum_probs=53.1
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCC-CCCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN-SAENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~-~~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
..+.+++|++. ++++ +|++++|||+||+|.++ .+++.|.|||||++||+ +|+++.+|+..+|++
T Consensus 20 ~~g~~~~v~r~-~~~~--~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~ 85 (98)
T cd03528 20 VGGRPIAVYRV-DGEF--YATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKT 85 (98)
T ss_pred ECCeEEEEEEE-CCEE--EEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCCCCCcce
Confidence 34566777765 4555 89999999999999876 34679999999999998 999999999888863
No 13
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.60 E-value=2.6e-15 Score=119.26 Aligned_cols=54 Identities=31% Similarity=0.709 Sum_probs=48.5
Q ss_pred cCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCCC--CeeccCCCCCCCCC
Q 028988 145 KDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ--GRVVRGPAPLVSNT 200 (200)
Q Consensus 145 ~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~~--G~v~~GPAp~pL~~ 200 (200)
.+|++ ||++++|||+||+|.|+.+++.|.|||||++||++ |+++.||+.++|++
T Consensus 47 ~~G~~--~A~~~~CpH~g~~L~~~~~~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~ 102 (129)
T TIGR02694 47 PDGDI--VAFSTLCTHMGCPVSYSADNKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQ 102 (129)
T ss_pred cCCEE--EEEeCcCCCCCcccccccCCCEEEcCCCCCEECCCCCCcEECCCCCCCCCe
Confidence 46776 89999999999999998888899999999999984 69999999999864
No 14
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.57 E-value=4e-15 Score=112.37 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=54.4
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
..+.+++|++..++++ ||+++.|||+|++|..+. +++.+.|||||++||+ ||+++.+|+..+|++
T Consensus 21 ~~g~~i~l~r~~~g~~--~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~ 87 (101)
T TIGR02377 21 HGGRTFAIYRTPDDQY--YATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKT 87 (101)
T ss_pred ECCeEEEEEEeCCCEE--EEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCCccCCcce
Confidence 4556778887656776 899999999999998653 5688999999999997 999999998888864
No 15
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.57 E-value=5.8e-15 Score=109.62 Aligned_cols=64 Identities=34% Similarity=0.766 Sum_probs=54.5
Q ss_pred CCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 135 ~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
.++.++|++..++++ ||++++|||.||+|.+.. +++.|.|||||++||+ ||+++.+|+..+|++
T Consensus 21 ~~~~~~v~~~~~~~~--~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~~~~l~~ 86 (98)
T cd03467 21 GGGPVVVVRREGGEV--YALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPK 86 (98)
T ss_pred CCeEEEEEEeCCCEE--EEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCCCCCcCE
Confidence 355677777666676 899999999999998764 5689999999999999 999999999888763
No 16
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.55 E-value=1e-14 Score=108.62 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=52.3
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
..+++++|++..++++ +|++++|||+||+|.++. +++.|.|||||++||+ +|.+ .+|+..+|++
T Consensus 20 ~~g~~i~l~r~~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~-~~p~~~~l~~ 85 (98)
T cd03530 20 TGGGEIAVFRTADDEV--FALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEA-QGPDEGCVRT 85 (98)
T ss_pred ECCEEEEEEEeCCCCE--EEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCC-CCCCCCccce
Confidence 3466788888766876 899999999999998864 5679999999999999 8885 5777777753
No 17
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.55 E-value=1e-14 Score=111.31 Aligned_cols=62 Identities=29% Similarity=0.575 Sum_probs=53.1
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPLV 197 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp~p 197 (200)
..+++++|++..+|++ +|++++|||+||+|.++. +++.|.|||||++||++|+++.+|+..+
T Consensus 21 ~~~~~i~v~r~~~g~~--~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P~~~~ 84 (118)
T cd03469 21 LGGEPLVLVRDRDGEV--RAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVPREEG 84 (118)
T ss_pred ECCccEEEEECCCCCE--EEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCCcccc
Confidence 4566788888767877 899999999999998864 4679999999999999999999998654
No 18
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.54 E-value=7e-15 Score=121.94 Aligned_cols=53 Identities=40% Similarity=0.786 Sum_probs=44.1
Q ss_pred CCceeEEEEeccCCCCCccCCC----CC------------CCCeEEcCCCCeeeCC-CC-eeccCCCCCCCCC
Q 028988 146 DKTLASYGINAVCTHLGCVVPW----NS------------AENKFICPCHGSQYNN-QG-RVVRGPAPLVSNT 200 (200)
Q Consensus 146 ~g~~~~~A~s~vCTHlGC~l~~----~~------------~~~~~~CPcHGS~Fd~-~G-~v~~GPAp~pL~~ 200 (200)
++++ +|++++|||+||++.+ .. +++.|+||||||+||+ +| .++.|||+++|++
T Consensus 74 ~g~I--vA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~ 144 (171)
T cd03475 74 NKSI--VAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPA 144 (171)
T ss_pred CCEE--EEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCE
Confidence 4555 8999999999999864 21 2578999999999999 45 7899999999974
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.51 E-value=2.4e-14 Score=112.98 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=51.7
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
..+++++|+++.+|++ +|+.++|+|+|+.|.++. +...|.|||||++||.+|+++..|+..
T Consensus 29 ~~~~~i~l~r~~~g~i--~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~~~~~P~~~ 91 (128)
T cd03472 29 MGEDPVIVVRQKDGSI--RVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGNLVNVPFEK 91 (128)
T ss_pred ECCceEEEEECCCCCE--EEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcCEEeccCcc
Confidence 4567788888778887 899999999999998754 235899999999999999999999853
No 20
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.49 E-value=4.7e-14 Score=106.88 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=50.9
Q ss_pred CCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 135 ~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
.+++.+++++.+|++ +|++++|||+|++|.++. +++.|.|||||++||+ +|..+ +|+..+|++
T Consensus 21 ~~~~~~~~~~~~g~~--~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~-~~~~~~L~~ 85 (108)
T cd03474 21 DGEEVLLVAPEGGEF--RAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGL-NPRDCRLAR 85 (108)
T ss_pred CCeEEEEEEccCCeE--EEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCcccc-CCCCCccce
Confidence 455677888778876 899999999999998764 4469999999999999 66654 687777753
No 21
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.48 E-value=5.2e-14 Score=106.99 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=49.0
Q ss_pred CCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CC-CeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 137 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AE-NKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 137 ~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~-~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
++++|++ .+|++ ||++++|||+||+|..+. ++ +.+.|||||++||+ +|+++.+|+..+|++
T Consensus 24 ~~i~v~~-~~g~~--~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~ 87 (106)
T PRK09965 24 PVIALFN-VGGEF--YAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRT 87 (106)
T ss_pred CeEEEEE-ECCEE--EEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCCCCCCcce
Confidence 4455555 46776 899999999999996432 33 68999999999998 999999998888763
No 22
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.48 E-value=9.4e-14 Score=108.44 Aligned_cols=65 Identities=22% Similarity=0.405 Sum_probs=55.4
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPLVSN 199 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~ 199 (200)
...+++++|+++.+|++ +|+.++|+|+|++|.++. +.+.|.||+||++||++|+++..|...+++
T Consensus 21 ~~~g~~i~v~r~~dg~v--~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P~~~~~~ 86 (118)
T cd03541 21 RLGNVEYVVCRDGNGKL--HAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKATQATGIQ 86 (118)
T ss_pred EECCeEEEEEECCCCCE--EEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCCCccccc
Confidence 35667888888878877 899999999999998764 346899999999999999999999877654
No 23
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.45 E-value=1.6e-13 Score=110.03 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=52.9
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
...+.+++|++..+|++ +|++++|+|+||.|.++. +++.|.|||||++||.+|+++..|+..
T Consensus 41 ~~~g~~i~v~r~~~G~v--~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~~G~~~~~P~~~ 103 (144)
T cd03479 41 RLLGEDLVAFRDTSGRV--GLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDVDGQCLEMPSEP 103 (144)
T ss_pred EECCcEEEEEEeCCCCE--EEEcCcCCCCCCcccCCcccCCEEEccCCCcEECCCCCEEECCCCc
Confidence 34567788888778886 899999999999999864 457999999999999999999998754
No 24
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.45 E-value=1.9e-13 Score=105.39 Aligned_cols=61 Identities=25% Similarity=0.512 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
...+.+++|++..+|++ +|++++|+|+|++|..+. .++.|.||+||++||.+|+++..|..
T Consensus 23 ~~~g~~i~l~r~~~g~~--~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~~p~~ 84 (116)
T cd03532 23 TLLGEPVVLYRTQDGRV--AALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVHMPGQ 84 (116)
T ss_pred EECCceEEEEECCCCCE--EEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEeCCCC
Confidence 34567888888778887 899999999999998653 46799999999999999999998864
No 25
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.45 E-value=1.9e-13 Score=107.86 Aligned_cols=63 Identities=29% Similarity=0.526 Sum_probs=53.3
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
....+++++|+++.+|++ +|++++|+|+|++|..+. +++.|.||+||++||.+|+++..|+..
T Consensus 35 ~~v~g~~l~l~r~~~g~v--~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd~tG~~~~~P~~~ 98 (129)
T cd04337 35 FELFGQPWVLFRDEDGTP--GCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYDGDGECTKMPSTK 98 (129)
T ss_pred EEECCcEEEEEECCCCcE--EEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEECCCCCEEeCCcCC
Confidence 345677888888778887 899999999999998764 457899999999999999999988653
No 26
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.44 E-value=2.5e-13 Score=104.94 Aligned_cols=59 Identities=22% Similarity=0.439 Sum_probs=50.8
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
..+++++|+++.+|++ +|++++|+|+|+.|..+. +++.|.||+||++||.+|+++.-|+
T Consensus 21 ~~g~~i~l~r~~~g~~--~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 21 AFGTKLVVFADSDGAL--NVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred ECCeEEEEEECCCCCE--EEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 4567788888778887 899999999999998764 4579999999999999999998875
No 27
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.43 E-value=2.5e-13 Score=106.13 Aligned_cols=61 Identities=30% Similarity=0.512 Sum_probs=51.1
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCC--CeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAE--NKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~--~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
..+++++|+++.+|++ +|+.++|+|+|++|..+..+ +.|.||+||++||.||+++..|+..
T Consensus 23 ~~~~~iiv~r~~~g~~--~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~~p~~~ 85 (123)
T cd03535 23 IGDDSFIVCRDEDGEI--RAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVGVPAQQ 85 (123)
T ss_pred ECCeEEEEEECCCCCE--EEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEeeCCCcc
Confidence 3456788888778887 89999999999999875432 5899999999999999999998754
No 28
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.43 E-value=2.8e-13 Score=105.80 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=50.9
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCC--CeEEcCCCCeeeCCCCeeccCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAE--NKFICPCHGSQYNNQGRVVRGPAPLV 197 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~--~~~~CPcHGS~Fd~~G~v~~GPAp~p 197 (200)
..+++++|+++.+|++ +|+.++|+|+|++|.++..+ ..|.||+||++||.+|+++..|..+.
T Consensus 21 ~~~~~i~v~r~~~g~v--~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p~~~~ 84 (123)
T cd03536 21 MGSDSVIVARDKDGEI--HVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAPVEKE 84 (123)
T ss_pred ECCceEEEEECCCCCE--EEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECCcccc
Confidence 3456677787668887 89999999999999875432 46999999999999999999997543
No 29
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.40 E-value=4.7e-13 Score=106.18 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=52.0
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
....+++++|+++.+|++ +|+.++|+|+|.+|..+. +++.|.||+||++||.+|+++..|.
T Consensus 35 ~~v~g~~ivl~r~~~G~v--~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~~~~~P~ 96 (134)
T cd04338 35 LSVYDEPFVLFRDQNGQL--RCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGKCVKIPQ 96 (134)
T ss_pred EEECCceEEEEEcCCCCE--EEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCCEEECCC
Confidence 345678888888778887 899999999999998654 4579999999999999999998774
No 30
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.39 E-value=6.7e-13 Score=104.16 Aligned_cols=59 Identities=24% Similarity=0.560 Sum_probs=49.1
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
..+++++|++..+|++ +|+.++|+|+|+.+.++. +.+.|.||+||++||.||+++.-|.
T Consensus 21 ~~~~~i~l~r~~~g~v--~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p~ 81 (123)
T cd03542 21 IGRQPVVITRDKDGEL--NAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVKD 81 (123)
T ss_pred ECCcEEEEEECCCCCE--EEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECCc
Confidence 4567788888778887 899999999999998753 2358999999999999999996553
No 31
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.38 E-value=8.7e-13 Score=106.25 Aligned_cols=63 Identities=19% Similarity=0.391 Sum_probs=52.6
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
....+++++|+++.+|++ +|+.++|+|.|+.|.++. +++.|.||+||++||.+|+++..|+.+
T Consensus 41 ~~i~g~~i~v~r~~~g~v--~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~ 106 (146)
T cd03538 41 TRIGDQPVVMVRHTDGSV--HVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKK 106 (146)
T ss_pred EEECCeeEEEEECCCCCE--EEEeccCcCCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchh
Confidence 345677888888777877 899999999999996543 245799999999999999999999755
No 32
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.36 E-value=1.3e-12 Score=105.67 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=52.5
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPLV 197 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp~p 197 (200)
...+++++|+++.+|++ +|+.++|+|.|++|.++. .++.|.||+||++||++|+++..|+.+.
T Consensus 45 ~i~g~~iiv~r~~~g~v--~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~ 109 (150)
T cd03545 45 FVGDTPVVVTRAEDGSL--HAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRG 109 (150)
T ss_pred EECCceEEEEECCCCCE--EEEcccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccc
Confidence 34567788878767877 899999999999998653 3568999999999999999999987654
No 33
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.35 E-value=1.4e-12 Score=100.11 Aligned_cols=56 Identities=27% Similarity=0.581 Sum_probs=46.8
Q ss_pred eEEEEecCCceeEEEEeccCCCCCccCCCCC-CCC-eEEcCCCCeeeCC-CCeeccCCCCC
Q 028988 139 TYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AEN-KFICPCHGSQYNN-QGRVVRGPAPL 196 (200)
Q Consensus 139 ~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~-~~~CPcHGS~Fd~-~G~v~~GPAp~ 196 (200)
..++++.+|++ ||++++|+|.||++..+. +++ .+.||||+++||+ ||+++.+|+..
T Consensus 29 ~~~~~~~~g~v--~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~~p~~~ 87 (106)
T COG2146 29 FALVVRADGEV--FAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGK 87 (106)
T ss_pred EEEEEecCCEE--EEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceecCCCCC
Confidence 55666678887 999999999999987653 343 5999999999999 99999999765
No 34
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.33 E-value=2.3e-12 Score=101.47 Aligned_cols=60 Identities=25% Similarity=0.415 Sum_probs=51.3
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
...|++++|++..+|++ +|+.++|+|+|+.|..+. +++.|.||+||++||.+|+++..|.
T Consensus 21 ~~~g~~ivl~r~~~g~v--~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP~ 81 (123)
T cd03537 21 TLFGRPCVAWRGATGRA--VVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIPG 81 (123)
T ss_pred EECCeEEEEEEccCCEE--EEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECCC
Confidence 34677788888777876 899999999999998753 5678999999999999999998875
No 35
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.33 E-value=2.5e-12 Score=99.48 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=49.4
Q ss_pred CCCCeEEEEecCCceeEEEEeccCCCCCccCCCC---CCCCeEEcCCCCeeeCC-CCeeccCCCCCCC
Q 028988 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN---SAENKFICPCHGSQYNN-QGRVVRGPAPLVS 198 (200)
Q Consensus 135 ~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~---~~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL 198 (200)
.+..+.|++ .+|++ ||++++|||+|+++..+ .+++.+.||+|||+||+ +|+++..|+..+.
T Consensus 29 ~g~~I~V~~-~~G~~--~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~~~~ 93 (107)
T cd03473 29 DGKKYIIYK-SKSEL--KACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDSFCQ 93 (107)
T ss_pred CCcEEEEEE-ECCEE--EEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCccccc
Confidence 455566665 47776 99999999999998752 35678999999999999 9999998886553
No 36
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.33 E-value=3.4e-12 Score=101.83 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=51.2
Q ss_pred cccCCCCeEEEEec-CCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 132 EGLKGDPTYLVVEK-DKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~~-~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
....+++++|+++. +|++ +|+.++|+|.|.+|..+. .++.|.||+||++||.+|+++..|.
T Consensus 35 ~~~~g~~i~v~r~~~dG~~--~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~~~~~P~ 98 (138)
T cd03480 35 FTLLGRDLVIWWDRNSQQW--RAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGSCQRIPQ 98 (138)
T ss_pred EEECCeeEEEEEECCCCEE--EEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCCEEECCC
Confidence 34567788888864 8877 899999999999998763 3468999999999999999998774
No 37
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.32 E-value=3.2e-12 Score=96.48 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=48.1
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCcc-CCCCC-----CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCV-VPWNS-----AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~-l~~~~-----~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..++++.|++..++++ ||+.+.|||.|++ +..+. ++..+.||+||++||+ +|+++.+|.. +|+
T Consensus 20 ~~g~~i~l~r~~~g~~--~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~ 89 (103)
T cd03529 20 VGDTQIAIFRLPGREV--YAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRCLEDEDV-SVA 89 (103)
T ss_pred ECCEEEEEEEeCCCeE--EEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCccCCCCc-cEe
Confidence 4566777877766676 8999999999997 44321 1347999999999997 9999998854 443
No 38
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.31 E-value=3.8e-12 Score=100.60 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=50.2
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPLV 197 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp~p 197 (200)
..+++++|+++.+|++ +|+.++|+|.|..|..+. +.+.|.||+|||+||++|+++.-|....
T Consensus 21 ~~~~~v~v~r~~dg~v--~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p~~~~ 84 (129)
T cd03539 21 IGERSVIMTRDPDGGI--NVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVPFRRG 84 (129)
T ss_pred ECCcEEEEEECCCCCE--EEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecccccc
Confidence 3456677778778877 899999999999998643 2358999999999999999998886543
No 39
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.30 E-value=3.7e-12 Score=96.16 Aligned_cols=63 Identities=16% Similarity=0.335 Sum_probs=47.5
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCC-CccCCCCC-CCC----eEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHL-GCVVPWNS-AEN----KFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHl-GC~l~~~~-~~~----~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..+.++.|++..++++ ||+++.|+|. +.++.++. .++ .|.||+||++||+ +|+++.+|. .+|.
T Consensus 21 v~g~~l~v~r~~~~~~--~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~-~~L~ 90 (105)
T TIGR02378 21 LGDTQIAIFRVPGDQV--FAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGRCLEDDS-GSVR 90 (105)
T ss_pred ECCEEEEEEEeCCCcE--EEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCccccCCCC-ccEe
Confidence 3566777777656766 8999999999 77776542 223 3999999999998 999887764 3554
No 40
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.25 E-value=1.3e-11 Score=97.87 Aligned_cols=57 Identities=26% Similarity=0.483 Sum_probs=46.8
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCC-CCeeccC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRG 192 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~-~G~v~~G 192 (200)
...+++++|++ .+|++ +|+.++|+|+|++|..+. +++.|.||+||++||+ +|+++..
T Consensus 33 ~~~g~~i~l~r-~~g~v--~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 33 QLCGEPILLRR-VDGKV--YALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred EECCcEEEEEe-cCCEE--EEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCccEEEc
Confidence 35667777766 67776 899999999999998642 4578999999999998 9999863
No 41
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.21 E-value=2.2e-11 Score=93.46 Aligned_cols=64 Identities=6% Similarity=0.180 Sum_probs=47.5
Q ss_pred cCCCCeEEEEe-cCCceeEEEEeccCCCCCcc-CCCCC--C-CC--eEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVE-KDKTLASYGINAVCTHLGCV-VPWNS--A-EN--KFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~-~~g~~~~~A~s~vCTHlGC~-l~~~~--~-~~--~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
..++.+.|++. .+|++ ||+++.|||.|+. +..+. + ++ .+.||+||++||+ ||+++..|+ .+|++
T Consensus 23 v~g~~i~l~~~~~~g~~--~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~t 94 (108)
T PRK09511 23 VGDEQVAIFRPYHDEQV--FAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKH 94 (108)
T ss_pred ECCEEEEEEEECCCCEE--EEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCcccCCCCC-ccEee
Confidence 34556777763 46776 9999999999996 66442 1 22 4999999999999 999997554 57653
No 42
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=99.20 E-value=5.7e-12 Score=80.96 Aligned_cols=39 Identities=69% Similarity=1.169 Sum_probs=30.6
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCC
Q 028988 58 DRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG 96 (200)
Q Consensus 58 ~~~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~ 96 (200)
|++|||+||+||+++++|++++.++++++|+++|++||.
T Consensus 1 d~VPdm~RR~lmN~ll~Gava~~a~~~lyP~~~ffvPP~ 39 (39)
T PF08802_consen 1 DRVPDMSRRQLMNLLLGGAVAVPAGGMLYPYVKFFVPPS 39 (39)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CCCCChhHHHHHHHHHHhhHHHHHHHHhhhheeEecCCC
Confidence 579999999999999999999999999999999999973
No 43
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=99.11 E-value=1.1e-10 Score=107.51 Aligned_cols=63 Identities=25% Similarity=0.431 Sum_probs=54.0
Q ss_pred ccccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 131 TEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 131 ~~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
...+.|++++|+++.+|++ +|+.++|+|.||+|..+. +++.|.||+|||+||.+|+++.-|..
T Consensus 90 ~f~L~GepIVL~Rd~dGqv--~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~C~~iP~~ 153 (394)
T PLN00095 90 AFDLFNVPWVLFRDADGEA--GCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGECAKMPSC 153 (394)
T ss_pred EEEECCEEEEEEECCCCCE--EEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCCEeeCCCc
Confidence 3456788898988878876 899999999999998653 56899999999999999999998864
No 44
>PLN02281 chlorophyllide a oxygenase
Probab=99.09 E-value=1.4e-10 Score=110.42 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=53.5
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
...|++++|++..+|++ +|+.++|+|.|++|..+. +++.|.|||||++||.+|+++..|...
T Consensus 239 ~llG~~IVL~R~~dG~v--~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~ 301 (536)
T PLN02281 239 ECFEQPWVIFRGEDGKP--GCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTK 301 (536)
T ss_pred EECCEEEEEEECCCCeE--EEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCc
Confidence 45678888888778887 899999999999998764 457999999999999999999998754
No 45
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=99.06 E-value=2.6e-10 Score=106.47 Aligned_cols=71 Identities=23% Similarity=0.535 Sum_probs=56.1
Q ss_pred CCCCCcccc-cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 123 HGPGDRTLT-EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 123 ~~P~~~~~~-~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
.+|+.+... ....++|++|+++.+|++ +|+.++|+|.|+.|..+. +...|.||+||++||.+|+++.-|.+
T Consensus 47 elp~~gd~~t~~~~~~~vvv~R~~dG~i--~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~ 120 (433)
T TIGR03229 47 QIPNNNDYYTTYMGRQPIFIARNKDGEL--NAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDP 120 (433)
T ss_pred HCCCCCCeEEEEECCeEEEEEECCCCcE--EEEeCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCc
Confidence 345544322 335678899999888887 799999999999998643 24589999999999999999988874
No 46
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=98.98 E-value=6.6e-10 Score=103.98 Aligned_cols=71 Identities=24% Similarity=0.469 Sum_probs=55.0
Q ss_pred CCCCCcc-cccccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCC-C-CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 123 HGPGDRT-LTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN-S-AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 123 ~~P~~~~-~~~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~-~-~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
.+|+... ++....++|++|+++.+|++ .|+.|+|+|.|+.|... . ....|.||+||++||.+|+.+.-|.+
T Consensus 47 elp~~GDy~t~~ig~~pviv~R~~dG~i--~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~ 120 (438)
T TIGR03228 47 ELPNNHDFVTVRAGRQPMIVTRDGKGEL--HALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAP 120 (438)
T ss_pred HCCCCCCeEEEEECCeEEEEEECCCCCE--EEEcccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcc
Confidence 3454433 22345678899999889987 79999999999999752 2 23579999999999999999876654
No 47
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=98.95 E-value=4.7e-10 Score=85.81 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=49.8
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCC-CCccCCCCC-C----CCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTH-LGCVVPWNS-A----ENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTH-lGC~l~~~~-~----~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
...+..+.|++..++++ ||+++.|+| .+-++..+. + +..+.||+|+++||+ +|+++..|. .+|+
T Consensus 20 ~v~g~~Ialf~~~~~~v--yAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~ 90 (104)
T PF13806_consen 20 EVDGRQIALFRVRDGEV--YAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGECLEDPD-VSLR 90 (104)
T ss_dssp EETTEEEEEEEESTTEE--EEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTEESSECS-EBSB
T ss_pred EECCeEEEEEEeCCCCE--EEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcCcCCCCC-CcEE
Confidence 34667788888757776 999999999 788887542 2 238999999999999 999988665 4443
No 48
>PLN02518 pheophorbide a oxygenase
Probab=98.91 E-value=1.9e-09 Score=103.20 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=51.8
Q ss_pred cccCCCCeEEEEe-cCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 132 EGLKGDPTYLVVE-KDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~-~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
....|++++|+++ .+|++ +|+.++|+|.|++|..+. +++.|.||+||++||.+|+++.-|.
T Consensus 108 ~~llG~~lVl~Rd~~~G~~--~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~G~c~~IP~ 171 (539)
T PLN02518 108 FQLLGRDLVLWKDPNQGEW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQ 171 (539)
T ss_pred EEECCEEEEEEEECCCCeE--EEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCCCCeeeccc
Confidence 4467888999987 68876 799999999999998764 3578999999999999999987663
No 49
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=98.84 E-value=5.3e-09 Score=94.22 Aligned_cols=63 Identities=32% Similarity=0.602 Sum_probs=54.3
Q ss_pred cccccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CC-CeEEcCCCCeeeCCCCeeccCCC
Q 028988 130 LTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AE-NKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 130 ~~~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~-~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
+.....+++++|+++.||++ .|+.++|.|.|..|..+. .+ +.|.||+||++||.+|+++.-|.
T Consensus 43 ~~~~i~g~~lvi~R~~dg~~--~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~ 107 (367)
T COG4638 43 LTVRIGGEPLVVVRDKDGQV--HALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPA 107 (367)
T ss_pred eeEEEcCeEEEEEECCCCCE--EEEeccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCc
Confidence 44456788999999999987 789999999999998764 34 79999999999999999998883
No 50
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=98.47 E-value=9.7e-08 Score=62.12 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCC
Q 028988 58 DRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP 95 (200)
Q Consensus 58 ~~~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp 95 (200)
++..|.+||+||..+..++++++++++++||+++|.|+
T Consensus 4 ~~~~~~~RRdFL~~at~~~gavG~~~~a~Pfv~s~~Ps 41 (41)
T PF10399_consen 4 NEPVDPTRRDFLTIATSAVGAVGAAAAAWPFVSSMNPS 41 (41)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45667899999999999999999999999999999884
No 51
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=95.93 E-value=0.011 Score=42.00 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=16.8
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHH
Q 028988 59 RVPDMGKRQLMNLLLLGAVSLPTG 82 (200)
Q Consensus 59 ~~pd~~RR~FL~~~~~G~~al~~~ 82 (200)
...+++||+||+.+++++++++++
T Consensus 5 ~~~~~sRR~Flk~lg~~aaa~~aa 28 (66)
T TIGR02811 5 QKADPSRRDLLKGLGVGAAAGAVA 28 (66)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHH
Confidence 445679999999977665544443
No 52
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=95.66 E-value=0.012 Score=34.60 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHhH
Q 028988 63 MGKRQLMNLLLLGAVS 78 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~a 78 (200)
++||+||+..+..+++
T Consensus 2 ~sRR~fLk~~~a~~a~ 17 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAA 17 (26)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6899999986654444
No 53
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=93.78 E-value=0.051 Score=32.41 Aligned_cols=18 Identities=6% Similarity=0.159 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHhHHH
Q 028988 63 MGKRQLMNLLLLGAVSLP 80 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~al~ 80 (200)
++||+||+.+..++++++
T Consensus 1 ~sRR~Flk~~~~~~a~~~ 18 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAG 18 (29)
T ss_pred CchhhhHHHHHHHHHHHh
Confidence 479999999866555433
No 54
>PRK09898 hypothetical protein; Provisional
Probab=86.64 E-value=0.33 Score=41.01 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=18.3
Q ss_pred CcchHHHHHHHHHHHhHHHHHHhhcc
Q 028988 62 DMGKRQLMNLLLLGAVSLPTGFMLVP 87 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~al~~~~~~~P 87 (200)
.++||+||+.++.+++++++++.++.
T Consensus 12 ~~~RR~flk~~~~~~~g~~~~~~~~~ 37 (208)
T PRK09898 12 GLTRLEFLRISGKGLAGLTIAPALLS 37 (208)
T ss_pred chhHHHHHHhhcchhhhhhhhhHHHH
Confidence 38999999998766666555554443
No 55
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=76.97 E-value=2.9 Score=36.69 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=17.5
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHHhh
Q 028988 60 VPDMGKRQLMNLLLLGAVSLPTGFML 85 (200)
Q Consensus 60 ~pd~~RR~FL~~~~~G~~al~~~~~~ 85 (200)
...++||+||..++.+++++++++++
T Consensus 6 ~~~~~rr~f~~~~~~~~~~~~~~~~~ 31 (254)
T PRK09476 6 KPQNGRRRFLRDVVRTAGGLAAVGVA 31 (254)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999998876555555444443
No 56
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=74.93 E-value=3 Score=36.36 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHHHHh
Q 028988 62 DMGKRQLMNLLLLGAV 77 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~ 77 (200)
+++||+||+.+.+++.
T Consensus 2 ~~~RR~flk~~~~~~~ 17 (244)
T PRK14993 2 DSSKRQFLQQLGVLTA 17 (244)
T ss_pred CccHHHHHHHHHHHHH
Confidence 5789999997654333
No 57
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=74.31 E-value=3.1 Score=41.68 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=16.2
Q ss_pred ccCCCCC-CCCcchHHHHHHHHHHHh
Q 028988 53 TSIPADR-VPDMGKRQLMNLLLLGAV 77 (200)
Q Consensus 53 ~~~~~~~-~pd~~RR~FL~~~~~G~~ 77 (200)
+.||+.- ..+++||+||+.+.++++
T Consensus 3 ~~~~~~~~~~~~sRR~FLk~~~~~~a 28 (814)
T PRK14990 3 TKIPDAVLAAEVSRRGLVKTTAIGGL 28 (814)
T ss_pred CcCccchhccCccHHHHHHHHHHHHH
Confidence 3455543 337899999998654443
No 58
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=69.97 E-value=3.4 Score=37.74 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=9.6
Q ss_pred cchHHHHHHHHH
Q 028988 63 MGKRQLMNLLLL 74 (200)
Q Consensus 63 ~~RR~FL~~~~~ 74 (200)
|+||+||+.+++
T Consensus 1 ~~RR~fl~~~~~ 12 (328)
T PRK10882 1 MNRRNFLKAASA 12 (328)
T ss_pred CCHHHHHHHHHH
Confidence 689999997643
No 59
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=63.40 E-value=4.5 Score=37.79 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=18.3
Q ss_pred CCcchHHHHHHHHHHHhHHHHHHhhcc
Q 028988 61 PDMGKRQLMNLLLLGAVSLPTGFMLVP 87 (200)
Q Consensus 61 pd~~RR~FL~~~~~G~~al~~~~~~~P 87 (200)
..++||+||++....+++++......|
T Consensus 11 ~g~sRR~Flk~~~~~~a~~gl~~~~~~ 37 (371)
T PRK10468 11 HGINRRDFMKLCAALAATMGLSSKAAA 37 (371)
T ss_pred CCCcHHHHHHHHHHHHHHhCCChhhHH
Confidence 368999999998765555454444444
No 60
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=63.13 E-value=4.5 Score=37.70 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=14.6
Q ss_pred CcchHHHHHHHHHHHhHHHH
Q 028988 62 DMGKRQLMNLLLLGAVSLPT 81 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~al~~ 81 (200)
.++||+||++....+++++.
T Consensus 14 g~sRR~FlK~~~~~~a~~~l 33 (365)
T TIGR00391 14 GINRRDFLKLCAALATTLGL 33 (365)
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 68999999998765544443
No 61
>TIGR01412 tat_substr_1 Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.
Probab=57.85 E-value=9.8 Score=36.00 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=14.8
Q ss_pred CCCCcchHHHHHHHHHHHhH
Q 028988 59 RVPDMGKRQLMNLLLLGAVS 78 (200)
Q Consensus 59 ~~pd~~RR~FL~~~~~G~~a 78 (200)
..+.++||+||+++.+|.++
T Consensus 4 ~~~~~~rr~~~~~~~~~~~~ 23 (414)
T TIGR01412 4 APQQPSRRTLLKTAGAAGAV 23 (414)
T ss_pred ccCCccHHHHHHhhhhhhhh
Confidence 44578999999997665443
No 62
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=56.23 E-value=9.5 Score=38.05 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=9.7
Q ss_pred cchHHHHHHHHH
Q 028988 63 MGKRQLMNLLLL 74 (200)
Q Consensus 63 ~~RR~FL~~~~~ 74 (200)
++||+||+.+..
T Consensus 1 ~~RR~Flk~~~~ 12 (797)
T TIGR02166 1 ISRRHFLKTSAA 12 (797)
T ss_pred CCHHHHHHHHHH
Confidence 589999997653
No 63
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=52.24 E-value=11 Score=37.46 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHHHHh
Q 028988 62 DMGKRQLMNLLLLGAV 77 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~ 77 (200)
.++||+||+.+.++++
T Consensus 2 ~~sRR~Flk~~~~~~~ 17 (759)
T PRK15488 2 SLSRRDFLKGAGAGCA 17 (759)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4799999998755444
No 64
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=47.45 E-value=45 Score=32.47 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHh--HHHHHHhhccceeccCC
Q 028988 63 MGKRQLMNLLLLGAV--SLPTGFMLVPYATFFAP 94 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~--al~~~~~~~P~~~~l~P 94 (200)
++||.|++...+.++ ++.++++++|++.++.-
T Consensus 37 ~s~RGl~Nlg~LilL~lGLL~LFigyPIlt~~~~ 70 (504)
T PF03935_consen 37 FSRRGLLNLGGLILLILGLLMLFIGYPILTFFGK 70 (504)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhheeEEec
Confidence 789999998654444 55566778899988744
No 65
>PRK02888 nitrous-oxide reductase; Validated
Probab=45.08 E-value=24 Score=35.27 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=13.0
Q ss_pred CCCCCcchHHHHHHHHHH
Q 028988 58 DRVPDMGKRQLMNLLLLG 75 (200)
Q Consensus 58 ~~~pd~~RR~FL~~~~~G 75 (200)
++..+.+||+||+.+.++
T Consensus 4 ~~~~~~~rr~~~~~~~~~ 21 (635)
T PRK02888 4 EAPSGLSRRQFLGTAALA 21 (635)
T ss_pred cccCCccHHHhhhHHHHH
Confidence 345678999999775433
No 66
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=44.12 E-value=15 Score=37.14 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHH
Q 028988 63 MGKRQLMNLLLLG 75 (200)
Q Consensus 63 ~~RR~FL~~~~~G 75 (200)
++||+||+.+...
T Consensus 1 ~sRR~flk~~~~~ 13 (825)
T PRK15102 1 ASRRRFLKGLGGL 13 (825)
T ss_pred CCHHHHHHHHHHH
Confidence 5899999975533
No 67
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=41.93 E-value=17 Score=36.57 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=15.8
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhccce
Q 028988 63 MGKRQLMNLLLLGAVSLPTGFMLVPYA 89 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~al~~~~~~~P~~ 89 (200)
++||+||+.+..+++++++ +++-|-+
T Consensus 1 ~~RR~fl~~~a~~~~a~~~-~~~p~si 26 (690)
T TIGR03396 1 ISRRDFLKLAAAGGAAAAA-AALPPSI 26 (690)
T ss_pred CCHHHHHHHHHHHHHHHHH-hcCCHHH
Confidence 4799999887654444444 4444433
No 68
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=41.88 E-value=27 Score=28.82 Aligned_cols=8 Identities=25% Similarity=0.792 Sum_probs=6.9
Q ss_pred CcchHHHH
Q 028988 62 DMGKRQLM 69 (200)
Q Consensus 62 d~~RR~FL 69 (200)
.++||+||
T Consensus 1 g~sRR~~L 8 (168)
T PF12318_consen 1 GLSRRRLL 8 (168)
T ss_pred CCcHHHHH
Confidence 37899999
No 69
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=41.65 E-value=17 Score=25.55 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.1
Q ss_pred CeEEcCCCCeeeCCC
Q 028988 172 NKFICPCHGSQYNNQ 186 (200)
Q Consensus 172 ~~~~CPcHGS~Fd~~ 186 (200)
-.|.||-||.+..-+
T Consensus 31 vtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 31 VTIRCPKHGNFTCST 45 (60)
T ss_pred eEEECCCCCcEEecc
Confidence 479999999887743
No 70
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=41.15 E-value=24 Score=37.00 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHHhH
Q 028988 63 MGKRQLMNLLLLGAVS 78 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~a 78 (200)
++||+||+.+.+++++
T Consensus 2 ~sRR~FLk~~g~~~~~ 17 (1009)
T TIGR01553 2 ISRRAFLKLTAGGATL 17 (1009)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6899999987654443
No 71
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=40.54 E-value=14 Score=29.07 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=19.1
Q ss_pred cCCCCCccCCCCCCCCeEEcC-CCCeeeCC-CCe
Q 028988 157 VCTHLGCVVPWNSAENKFICP-CHGSQYNN-QGR 188 (200)
Q Consensus 157 vCTHlGC~l~~~~~~~~~~CP-cHGS~Fd~-~G~ 188 (200)
.|.|=+-.+ ..+...+.|| ||+-.|+. +|+
T Consensus 72 ~C~~C~~~~--~~e~~~~~CP~C~s~~~~i~~G~ 103 (115)
T COG0375 72 WCLDCGQEV--ELEELDYRCPKCGSINLRIIGGD 103 (115)
T ss_pred EeccCCCee--cchhheeECCCCCCCceEEecCC
Confidence 354433333 3344567799 99999997 675
No 72
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=38.53 E-value=35 Score=29.06 Aligned_cols=21 Identities=10% Similarity=-0.156 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHHHhHHHHHH
Q 028988 63 MGKRQLMNLLLLGAVSLPTGF 83 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~al~~~~ 83 (200)
.+||+||......++..++++
T Consensus 2 ~~rr~~~~~~~~~~~~~~~~~ 22 (213)
T TIGR00397 2 PERRDAFADAARAVGVACVGG 22 (213)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 479999987654444333333
No 73
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=37.14 E-value=25 Score=35.58 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHHHHh
Q 028988 62 DMGKRQLMNLLLLGAV 77 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~ 77 (200)
.++||+||+....+++
T Consensus 2 ~~~RR~Flk~~a~~aa 17 (830)
T PRK13532 2 KLSRRDFMKANAAAAA 17 (830)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 3789999998764433
No 74
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=36.29 E-value=24 Score=33.55 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhHHHH
Q 028988 65 KRQLMNLLLLGAVSLPT 81 (200)
Q Consensus 65 RR~FL~~~~~G~~al~~ 81 (200)
||+||+.+.++++++++
T Consensus 1 RR~Flk~~g~~~a~~~~ 17 (524)
T cd02764 1 RRGFLKLMGASLAMASA 17 (524)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 89999986655544333
No 75
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=36.08 E-value=28 Score=35.27 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=11.8
Q ss_pred cchHHHHHHHHHHHhH
Q 028988 63 MGKRQLMNLLLLGAVS 78 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~a 78 (200)
|+||+||+....++++
T Consensus 2 ~~rr~flk~~~~~a~~ 17 (830)
T TIGR01706 2 MSRRDFIKATAIASAA 17 (830)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7999999976644443
No 76
>PRK13747 putative mercury resistance protein; Provisional
Probab=35.85 E-value=11 Score=27.63 Aligned_cols=9 Identities=44% Similarity=1.169 Sum_probs=6.9
Q ss_pred CeEEcCCCC
Q 028988 172 NKFICPCHG 180 (200)
Q Consensus 172 ~~~~CPcHG 180 (200)
..+.||||=
T Consensus 24 AvLTCPCHL 32 (78)
T PRK13747 24 AVLTCPCHL 32 (78)
T ss_pred HHhcCcchH
Confidence 368899994
No 77
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=35.71 E-value=21 Score=33.12 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=14.6
Q ss_pred CcchHHHHHHHHHHHhHHHHH
Q 028988 62 DMGKRQLMNLLLLGAVSLPTG 82 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~al~~~ 82 (200)
+++||+||+++..-++.++..
T Consensus 12 g~~Rr~f~k~~~~~~a~l~L~ 32 (355)
T COG1740 12 GITRRDFLKLCGALAASLGLS 32 (355)
T ss_pred CCcHHHHHHHHHHHHHHhccC
Confidence 589999999976544444433
No 78
>TIGR02659 TTQ_MADH_Lt methylamine dehydrogenase light chain. This family consists of the light chain of methylamine dehydrogenase light chain, a periplasmic enzyme. This subunit contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from Trp-114 and Trp-165 of the precursor, numbered according to the sequence from Paracoccus denitrificans. The enzyme forms a complex with the type I blue copper protein amicyanin and cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.55 E-value=26 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhcccee
Q 028988 63 MGKRQLMNLLLLGAVSLPTGFMLVPYAT 90 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~al~~~~~~~P~~~ 90 (200)
.+||.||..+...+.+++ +..+.|+.+
T Consensus 22 tsRRs~l~~lG~~l~g~a-~~PlLPv~R 48 (186)
T TIGR02659 22 TSRRGFIGRLGTALAGSA-LVPLLPVDR 48 (186)
T ss_pred cchHHHHHHHHHHHhhhh-hccccccch
Confidence 579999999765444332 344456554
No 79
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=34.95 E-value=37 Score=29.04 Aligned_cols=11 Identities=9% Similarity=0.156 Sum_probs=8.6
Q ss_pred cchHHHHHHHH
Q 028988 63 MGKRQLMNLLL 73 (200)
Q Consensus 63 ~~RR~FL~~~~ 73 (200)
.+||+||..++
T Consensus 2 ~~rr~~l~~~~ 12 (225)
T TIGR03149 2 CSRRNFLAGVG 12 (225)
T ss_pred ccHHHHHHHHH
Confidence 47999997653
No 80
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=30.18 E-value=16 Score=26.73 Aligned_cols=9 Identities=44% Similarity=1.180 Sum_probs=6.7
Q ss_pred eEEcCCCCe
Q 028988 173 KFICPCHGS 181 (200)
Q Consensus 173 ~~~CPcHGS 181 (200)
.+.||||=-
T Consensus 25 ~lTCPCHLp 33 (75)
T PF05052_consen 25 LLTCPCHLP 33 (75)
T ss_pred HhhCcchHH
Confidence 578999943
No 81
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=29.88 E-value=39 Score=34.13 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=11.0
Q ss_pred cchHHHHHHHHHHHh
Q 028988 63 MGKRQLMNLLLLGAV 77 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~ 77 (200)
++||.||+....+++
T Consensus 1 ~~rr~~~k~~~~~~~ 15 (822)
T TIGR02164 1 MSRRDFLKGIASSSA 15 (822)
T ss_pred CCHHHHHHHHHHHHH
Confidence 589999998654433
No 82
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.27 E-value=54 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=24.7
Q ss_pred EeccCCCCCccCCCCCCCCeEEcCCCCeeeCC
Q 028988 154 INAVCTHLGCVVPWNSAENKFICPCHGSQYNN 185 (200)
Q Consensus 154 ~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~ 185 (200)
.|..|++=|-..........|.||-.|-++|.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECc
Confidence 57889888877665445678999977888886
No 83
>PRK00420 hypothetical protein; Validated
Probab=29.05 E-value=46 Score=26.03 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=23.9
Q ss_pred EeccCCCCCccCCCCCCCCeEEcCCCCeeeCC-CC
Q 028988 154 INAVCTHLGCVVPWNSAENKFICPCHGSQYNN-QG 187 (200)
Q Consensus 154 ~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~-~G 187 (200)
++..|+-=|.++- .-.++..+||-||..+.. ++
T Consensus 22 l~~~CP~Cg~pLf-~lk~g~~~Cp~Cg~~~~v~~~ 55 (112)
T PRK00420 22 LSKHCPVCGLPLF-ELKDGEVVCPVHGKVYIVKSD 55 (112)
T ss_pred ccCCCCCCCCcce-ecCCCceECCCCCCeeeeccH
Confidence 4577888776654 224578999999998876 44
No 84
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=28.70 E-value=8 Score=33.38 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=40.3
Q ss_pred CcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccCCCCeEE
Q 028988 62 DMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYL 141 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~p~~l 141 (200)
..+||.|..++..|++++..+..+--.+..|+..-...+ |..+...+...| ..+|+..++...|.|+|+++
T Consensus 42 ~~~~k~~~sy~~~g~~~~~~a~~ak~~v~~fi~smsAsa-------dvlA~akiei~l--~~IPeGk~~~~kwrGkpvfi 112 (210)
T KOG1671|consen 42 GEERKGFRSYLMVGAGAAGRAYAAKNLVTTFISSMSASA-------DVLAMAKIEIKL--SDIPEGKTVAFKWRGKPVFI 112 (210)
T ss_pred hhhhhceeeEEEecccceeehhhhhhhHHHHHHHhhhhh-------hhhhheeeeeee--ecCCCCCCcceeccCCceEE
Confidence 346778888877777765554443333322222211110 000100001111 23566677888899999999
Q ss_pred EEecCCc
Q 028988 142 VVEKDKT 148 (200)
Q Consensus 142 v~~~~g~ 148 (200)
.++...+
T Consensus 113 rhrt~~e 119 (210)
T KOG1671|consen 113 RHRTKAE 119 (210)
T ss_pred eeccccc
Confidence 8865444
No 85
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=27.72 E-value=26 Score=27.47 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=14.6
Q ss_pred CCeEEcCCCCeeeCC--CCeec
Q 028988 171 ENKFICPCHGSQYNN--QGRVV 190 (200)
Q Consensus 171 ~~~~~CPcHGS~Fd~--~G~v~ 190 (200)
.+.+.||+||=.-+- .|..+
T Consensus 85 rD~~kCPfHG~IIpRD~~G~Pi 106 (110)
T PF09740_consen 85 RDRKKCPFHGKIIPRDDEGNPI 106 (110)
T ss_pred cCcccCCCCCcccCCCCCCCCC
Confidence 367899999988775 45543
No 86
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=24.96 E-value=82 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=11.4
Q ss_pred CCCcchHHHHHHHHHH
Q 028988 60 VPDMGKRQLMNLLLLG 75 (200)
Q Consensus 60 ~pd~~RR~FL~~~~~G 75 (200)
.+.++||+||...+.+
T Consensus 5 ~~~~~rr~~l~~~~~~ 20 (154)
T PRK07474 5 PMALSRRQALALGGGA 20 (154)
T ss_pred cCCcCHHHHHHHHHHH
Confidence 3458999999974433
No 87
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=24.85 E-value=53 Score=30.20 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHHh
Q 028988 63 MGKRQLMNLLLLGAV 77 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~ 77 (200)
.+||+||+.+++|++
T Consensus 21 ~~rr~~l~~~~~~~~ 35 (319)
T PRK05363 21 LNRRRFLKALGLGAA 35 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999998554443
No 88
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=24.19 E-value=68 Score=26.28 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHhHHHHHHhh
Q 028988 63 MGKRQLMNLLLLGAVSLPTGFML 85 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~al~~~~~~ 85 (200)
++||++|-++.++.++++++..+
T Consensus 132 Lt~~~~l~~~~~~~g~~G~~~~~ 154 (157)
T PF14235_consen 132 LTKKKWLWYASLGLGAVGVAFFV 154 (157)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 46899999887777766665544
No 89
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=23.64 E-value=63 Score=26.04 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=23.3
Q ss_pred EeccCCCCCccCCCCCCCCeEEcCCCCeeeCC
Q 028988 154 INAVCTHLGCVVPWNSAENKFICPCHGSQYNN 185 (200)
Q Consensus 154 ~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~ 185 (200)
++..|+-=|++|-- .++.++||-||-++..
T Consensus 27 L~~hCp~Cg~PLF~--KdG~v~CPvC~~~~~~ 56 (131)
T COG1645 27 LAKHCPKCGTPLFR--KDGEVFCPVCGYREVV 56 (131)
T ss_pred HHhhCcccCCccee--eCCeEECCCCCceEEE
Confidence 35579998999743 5689999999977653
No 90
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=22.78 E-value=45 Score=19.80 Aligned_cols=16 Identities=50% Similarity=0.609 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCcccccc
Q 028988 1 MASSSSLSSATPSQLCS 17 (200)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (200)
|||++..|+ +||.+-|
T Consensus 1 masstpasp-apsdils 16 (29)
T PF05570_consen 1 MASSTPASP-APSDILS 16 (29)
T ss_pred CCcCCCCCC-CcHHHHh
Confidence 788544444 4454443
No 91
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=21.82 E-value=32 Score=30.20 Aligned_cols=13 Identities=38% Similarity=1.214 Sum_probs=10.7
Q ss_pred eEEcC-CCCeeeCC
Q 028988 173 KFICP-CHGSQYNN 185 (200)
Q Consensus 173 ~~~CP-cHGS~Fd~ 185 (200)
.++|| |||.+|..
T Consensus 100 ~~fC~~C~G~r~~~ 113 (261)
T cd03271 100 ELFCEVCKGKRYNR 113 (261)
T ss_pred HhcCccccccccCH
Confidence 45697 99999995
No 92
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=21.77 E-value=55 Score=33.63 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhHHH
Q 028988 65 KRQLMNLLLLGAVSLP 80 (200)
Q Consensus 65 RR~FL~~~~~G~~al~ 80 (200)
||+||+.+..++++++
T Consensus 1 rr~flk~~~a~~~~~~ 16 (912)
T TIGR03479 1 RRDFLKGSGAALLGAG 16 (912)
T ss_pred ChhHHHHhHHHHHHHh
Confidence 8999998655544443
No 93
>PRK13669 hypothetical protein; Provisional
Probab=21.62 E-value=22 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.8
Q ss_pred Ec-CCCCeeeCC-CCeeccCCCCCCC
Q 028988 175 IC-PCHGSQYNN-QGRVVRGPAPLVS 198 (200)
Q Consensus 175 ~C-PcHGS~Fd~-~G~v~~GPAp~pL 198 (200)
+| +|+-+-|-. +|+++.|+.+.-|
T Consensus 39 ~CG~C~~~~FAlVng~~V~a~t~eeL 64 (78)
T PRK13669 39 YCGICSEGLFALVNGEVVEGETPEEL 64 (78)
T ss_pred hCcCcccCceEEECCeEeecCCHHHH
Confidence 46 899999998 9999999876543
No 94
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.57 E-value=48 Score=30.62 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCcchHHHHHHHHHHHhHHHH
Q 028988 60 VPDMGKRQLMNLLLLGAVSLPT 81 (200)
Q Consensus 60 ~pd~~RR~FL~~~~~G~~al~~ 81 (200)
.|++.||.||+..+++.+++.+
T Consensus 3 ~~lidRR~fl~~ag~~~~a~~~ 24 (366)
T COG3490 3 QPLIDRRHFLKAAGIGFAAALA 24 (366)
T ss_pred cchhhHHHHHHhhhhhhhhhhc
Confidence 3578999999998877776543
No 95
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=20.75 E-value=38 Score=26.40 Aligned_cols=17 Identities=41% Similarity=0.915 Sum_probs=9.8
Q ss_pred EcCCCCeeeCCCCeeccC
Q 028988 175 ICPCHGSQYNNQGRVVRG 192 (200)
Q Consensus 175 ~CPcHGS~Fd~~G~v~~G 192 (200)
.||+||.. -..|+.+.|
T Consensus 18 ~cP~~g~l-~irgk~l~G 34 (108)
T PRK08572 18 NCPFHGTL-PVRGQVLEG 34 (108)
T ss_pred CCCCccee-eeeeEEEEE
Confidence 39999943 224554443
No 96
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=20.61 E-value=44 Score=31.09 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.1
Q ss_pred CeEEcCCCCeeeCCCCeeccCC
Q 028988 172 NKFICPCHGSQYNNQGRVVRGP 193 (200)
Q Consensus 172 ~~~~CPcHGS~Fd~~G~v~~GP 193 (200)
..++=|+|||-.|..|+-+.-|
T Consensus 266 ~~lfEPvHGSAPDIAGkgiANP 287 (348)
T COG0473 266 PALFEPVHGSAPDIAGKGIANP 287 (348)
T ss_pred CceeecCCCCcccccCCCccCh
Confidence 4677799999999999988776
Done!