Query 028988
Match_columns 200
No_of_seqs 208 out of 1391
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_D Rieske iron-sulfur prot 100.0 5.9E-35 2E-39 240.2 4.8 149 52-200 2-150 (179)
2 2qjy_C Ubiquinol-cytochrome C 99.9 2E-27 6.7E-32 197.2 10.4 126 60-200 6-173 (187)
3 3cx5_E Cytochrome B-C1 complex 99.9 1.7E-26 6E-31 191.3 9.7 126 60-200 17-172 (185)
4 1pp9_E Ubiquinol-cytochrome C 99.9 3.6E-25 1.2E-29 185.2 7.2 125 61-200 28-182 (196)
5 1rfs_A Rieske protein; iron-su 99.8 7.1E-22 2.4E-26 156.6 5.2 109 92-200 1-109 (139)
6 4aay_B AROB; oxidoreductase, r 99.8 1.2E-20 4.2E-25 155.2 6.4 63 136-200 74-147 (175)
7 2nwf_A Ubiquinol-cytochrome C 99.7 1.3E-18 4.3E-23 138.6 6.0 53 146-200 73-127 (141)
8 3azc_A Cytochrome B6-F complex 99.6 1.3E-19 4.5E-24 143.2 0.0 100 101-200 4-103 (133)
9 1rie_A Rieske iron-sulfur prot 99.7 3.2E-18 1.1E-22 133.6 5.8 53 146-200 62-115 (129)
10 1g8k_B Arsenite oxidase; molyb 99.7 1.9E-17 6.6E-22 129.8 6.2 63 136-200 31-104 (133)
11 2qpz_A Naphthalene 1,2-dioxyge 99.7 4.6E-17 1.6E-21 121.1 5.5 63 134-199 23-87 (103)
12 3dqy_A Toluene 1,2-dioxygenase 99.7 9.4E-17 3.2E-21 120.1 6.6 65 133-200 20-86 (106)
13 2i7f_A Ferredoxin component of 99.7 1.3E-16 4.4E-21 119.7 6.5 64 133-199 22-88 (108)
14 3gce_A Ferredoxin component of 99.7 1.5E-16 5E-21 122.4 6.8 65 133-200 29-97 (121)
15 1fqt_A Rieske-type ferredoxin 99.6 1.4E-16 4.9E-21 120.4 6.5 64 134-200 25-91 (112)
16 1vm9_A Toluene-4-monooxygenase 99.6 4E-16 1.4E-20 117.6 6.1 62 135-199 23-86 (111)
17 2de6_D Ferredoxin component of 99.6 5.4E-16 1.9E-20 118.1 5.3 63 134-199 24-89 (115)
18 2jo6_A Nitrite reductase [NAD( 99.5 6.5E-15 2.2E-19 111.2 4.9 63 134-199 26-96 (113)
19 1jm1_A Rieske iron-sulfur prot 99.5 8.2E-15 2.8E-19 123.0 5.2 52 146-199 84-149 (204)
20 3c0d_A Putative nitrite reduct 99.5 7.2E-15 2.5E-19 112.5 3.6 63 134-199 25-94 (119)
21 1nyk_A Rieske iron-sulfur prot 99.5 7.7E-15 2.6E-19 119.4 3.4 49 151-199 80-131 (165)
22 2jza_A Nitrite reductase [NAD( 99.5 5E-14 1.7E-18 109.6 6.1 63 134-199 23-93 (130)
23 4aiv_A Probable nitrite reduct 99.4 1.9E-13 6.5E-18 105.3 6.1 62 135-199 31-99 (119)
24 3d89_A Rieske domain-containin 99.3 1.2E-12 4.2E-17 104.4 3.7 55 134-191 36-96 (157)
25 3gke_A DDMC; rieske cluster, n 99.3 3.6E-12 1.2E-16 113.5 5.7 60 133-194 26-86 (349)
26 2zyl_A Possible oxidoreductase 99.3 4E-12 1.4E-16 114.6 5.9 62 132-195 43-105 (386)
27 2gbw_A Biphenyl 2,3-dioxygenas 99.2 1.7E-11 5.8E-16 112.4 6.4 62 133-196 57-120 (454)
28 2b1x_A Naphthalene dioxygenase 99.2 1.3E-11 4.4E-16 113.7 5.5 61 133-195 65-127 (470)
29 1q90_R Cytochrome B6-F complex 99.2 8E-12 2.7E-16 83.2 3.0 46 56-101 2-47 (49)
30 3gcf_A Terminal oxygenase comp 99.2 1.5E-11 5.1E-16 112.3 5.8 60 132-194 52-115 (394)
31 3n0q_A Putative aromatic-ring 99.2 1.7E-11 5.7E-16 112.0 6.0 62 132-195 60-123 (409)
32 1uli_A Biphenyl dioxygenase la 99.2 2.1E-11 7.1E-16 112.2 6.4 61 133-195 75-137 (460)
33 3gkq_A Terminal oxygenase comp 99.2 1.5E-11 5E-16 112.2 5.3 60 132-194 49-112 (389)
34 2de6_A Terminal oxygenase comp 99.2 1.8E-11 6.2E-16 110.1 5.4 60 132-194 46-109 (392)
35 2bmo_A Oxygenase-alpha NBDO; n 99.2 2.4E-11 8.3E-16 111.0 6.1 61 133-195 56-118 (447)
36 1z01_A 2-OXO-1,2-dihydroquinol 99.2 2.3E-11 7.8E-16 111.5 5.4 60 132-194 61-124 (446)
37 3vca_A Ring-hydroxylating diox 99.1 3.4E-11 1.2E-15 110.0 6.3 62 132-195 62-125 (412)
38 3gzx_A Biphenyl dioxygenase su 99.1 4.7E-11 1.6E-15 110.5 6.1 61 133-195 77-139 (457)
39 2pq4_B Periplasmic nitrate red 94.2 0.029 1E-06 34.3 2.4 16 62-77 2-17 (35)
40 2w0y_A APH, alkaline phosphata 63.9 1.4 4.9E-05 40.9 0.0 17 58-74 7-23 (473)
41 2wpn_A Periplasmic [nifese] hy 56.8 2.3 7.8E-05 37.5 0.0 20 62-81 2-21 (317)
42 1h2a_S Hydrogenase; SO ligand, 55.6 2.5 8.4E-05 37.3 0.0 22 61-82 19-40 (317)
43 2vpz_A Thiosulfate reductase; 39.3 6.3 0.00021 37.6 0.0 13 63-75 1-13 (765)
44 1kqf_A FDH-N alpha, formate de 37.0 7.2 0.00025 38.8 0.0 15 62-76 2-16 (1015)
45 2ivf_A Ethylbenzene dehydrogen 35.2 8 0.00027 38.3 0.0 16 62-77 18-33 (976)
46 1tmo_A TMAO reductase, trimeth 33.6 8.8 0.0003 36.9 0.0 13 63-75 1-13 (829)
47 2pk7_A Uncharacterized protein 28.4 32 0.0011 23.5 2.2 35 157-191 10-45 (69)
48 1h6d_A Precursor form of gluco 25.1 15 0.00052 32.6 0.0 16 63-78 27-42 (433)
49 3c75_L Methylamine dehydrogena 24.7 16 0.00053 30.0 0.0 28 63-91 22-49 (188)
50 3h3g_B Parathyroid hormone-rel 23.6 27 0.00092 19.4 0.8 15 62-76 6-20 (24)
51 2jny_A Uncharacterized BCR; st 22.8 44 0.0015 22.7 2.0 36 157-192 12-48 (67)
52 2hf1_A Tetraacyldisaccharide-1 21.3 49 0.0017 22.5 2.0 35 157-191 10-45 (68)
53 2jr6_A UPF0434 protein NMA0874 20.7 51 0.0017 22.4 2.0 36 157-192 10-46 (68)
No 1
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=100.00 E-value=5.9e-35 Score=240.17 Aligned_cols=149 Identities=58% Similarity=1.046 Sum_probs=119.7
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccc
Q 028988 52 ATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLT 131 (200)
Q Consensus 52 ~~~~~~~~~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~ 131 (200)
+.+.+.++.|||+||+||+++++++++++++++++|+++++.|+.....+++.+.+|..|+++..++|+.+..+++....
T Consensus 2 ~~~~~~~~~~~~~RR~Fl~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~ 81 (179)
T 1vf5_D 2 AQFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLV 81 (179)
T ss_dssp ----------CCCCCTTSCTTHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEE
T ss_pred CcccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEE
Confidence 34566778999999999999999999999999999999999999877666667888888998887777665555555444
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
....+++++++++.+|++.+||++++|||+||+|.|+.+++.|.||||||+||.+|+++.||++++|++
T Consensus 82 ~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~ 150 (179)
T 1vf5_D 82 QGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGRVIRGPAPLSLAL 150 (179)
T ss_dssp SCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCSSSSSEECTTTCCEECSSSCCCSSSCCSCCBC
T ss_pred eccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccCCCCEEECCCCCCEECCCCcEecCCCCCCCCe
Confidence 345678899988888887568999999999999999887889999999999999999999999999964
No 2
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.94 E-value=2e-27 Score=197.20 Aligned_cols=126 Identities=27% Similarity=0.415 Sum_probs=92.5
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccCCCCe
Q 028988 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPT 139 (200)
Q Consensus 60 ~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~p~ 139 (200)
..+++||+||+++++++++++++++++|+++++.|+....+.+ .++++. ..++........+.|+|+
T Consensus 6 ~~~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~~~~~a~~-~v~v~l------------s~l~~G~~~~v~~~g~pv 72 (187)
T 2qjy_C 6 DHAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADVQALA-SIFVDV------------SSVEPGVQLTVKFLGKPI 72 (187)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTTSCCC-CEEEEC------------TTCCTTEEEEEEETTEEE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccc-cEEEEH------------HHCCCCCeEEEEECCEEE
Confidence 4578999999999988999888899999999999987655443 444331 011111112234556677
Q ss_pred EEEEe----------------------------------------cCCceeEEEEeccCCCCCccCCC-CCC-CCeEEcC
Q 028988 140 YLVVE----------------------------------------KDKTLASYGINAVCTHLGCVVPW-NSA-ENKFICP 177 (200)
Q Consensus 140 ~lv~~----------------------------------------~~g~~~~~A~s~vCTHlGC~l~~-~~~-~~~~~CP 177 (200)
+|+++ .++++ +|++++|||+||++.+ ... .+.|+||
T Consensus 73 ~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~--~a~~~~C~H~G~~l~~~~~g~~~~~~CP 150 (187)
T 2qjy_C 73 FIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEW--LVMWGVCTHLGCSPIGGVSGDFGGWFCP 150 (187)
T ss_dssp EEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCE--EEEECCCTTTSCCCEEEEETTTTEEEET
T ss_pred EEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeE--EEEeCccCCCCeECccCcCCCcCEEEeC
Confidence 77662 14555 8999999999999987 332 3789999
Q ss_pred CCCeeeCCCCeeccCCCCCCCCC
Q 028988 178 CHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 178 cHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
||||+||++|+++.||++++|++
T Consensus 151 ~Hg~~Fd~~G~~~~gPa~~~L~~ 173 (187)
T 2qjy_C 151 CHGSHYDSAGRIRKGPAPENLPI 173 (187)
T ss_dssp TTTEEECTTSCEEESSCCSCCCB
T ss_pred CCCCEECCCCeEeCCCCCCCCce
Confidence 99999999999999999999863
No 3
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.93 E-value=1.7e-26 Score=191.32 Aligned_cols=126 Identities=23% Similarity=0.386 Sum_probs=88.9
Q ss_pred CCCcchHHHHHHHHHHHhHH---HHHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccCC
Q 028988 60 VPDMGKRQLMNLLLLGAVSL---PTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKG 136 (200)
Q Consensus 60 ~pd~~RR~FL~~~~~G~~al---~~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g 136 (200)
..+++||+||++++++++++ ++++.++|++.++.|+....+ .+.++++ +.+ +|....+...+.|
T Consensus 17 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a-~~~v~V~-----------~s~-l~~G~~~~v~~~g 83 (185)
T 3cx5_E 17 NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLA-MAKVEVN-----------LAA-IPLGKNVVVKWQG 83 (185)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGCC-CCCEEEE-----------GGG-CCTTCEEEEEETT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcchhc-cCcEEEE-----------HHH-CCCCCeEEEEECC
Confidence 45789999999987665433 444556889988888654332 2222222 111 2212223345678
Q ss_pred CCeEEEEec--------------------------CCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCee
Q 028988 137 DPTYLVVEK--------------------------DKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRV 189 (200)
Q Consensus 137 ~p~~lv~~~--------------------------~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v 189 (200)
+|++|++.. ++++ +|++++|||+||.+.++. +.+.|+||||||+||.+|++
T Consensus 84 ~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~--~a~~~iCtHlGc~p~~~~~~~~~~~CPcHGs~FD~~G~v 161 (185)
T 3cx5_E 84 KPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQW--LIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRI 161 (185)
T ss_dssp EEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTE--EEEECCCTTTSCCCEEEETTTTEEEETTTTEEECTTCCE
T ss_pred eEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeE--EEEecccCCCCceeccCCCCCCEEEcCCCCCEECCCCCE
Confidence 888888863 3555 899999999999876653 34799999999999999999
Q ss_pred ccCCCCCCCCC
Q 028988 190 VRGPAPLVSNT 200 (200)
Q Consensus 190 ~~GPAp~pL~~ 200 (200)
+.|||+++|++
T Consensus 162 ~~gPa~~~L~v 172 (185)
T 3cx5_E 162 RKGPAPLNLEI 172 (185)
T ss_dssp EESSCCSCCCC
T ss_pred ecCCCCCCcce
Confidence 99999999963
No 4
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.91 E-value=3.6e-25 Score=185.19 Aligned_cols=125 Identities=23% Similarity=0.420 Sum_probs=88.1
Q ss_pred CCcchHHHHHHHHHHHhHHH---HHHhhccceeccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccCCC
Q 028988 61 PDMGKRQLMNLLLLGAVSLP---TGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGD 137 (200)
Q Consensus 61 pd~~RR~FL~~~~~G~~al~---~~~~~~P~~~~l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~ 137 (200)
.+.+||+||+.+++++++++ ++.+++|++.++.|+....+. +.++++ +.+..++ ..+...+.|+
T Consensus 28 ~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~-~~v~v~-----------ls~l~~G-~~~~v~~~G~ 94 (196)
T 1pp9_E 28 SSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAM-SKIEIK-----------LSDIPEG-KNMAFKWRGK 94 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHCC-CCEEEE-----------GGGSCTT-CEEEEEETTE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccc-cccEEE-----------HHHCCCC-CeEEEEECCE
Confidence 36789999998766555433 335678999999886533222 222221 1111122 2233456778
Q ss_pred CeEEEEec--------------------------CCceeEEEEeccCCCCCccCCCCCC-CCeEEcCCCCeeeCCCCeec
Q 028988 138 PTYLVVEK--------------------------DKTLASYGINAVCTHLGCVVPWNSA-ENKFICPCHGSQYNNQGRVV 190 (200)
Q Consensus 138 p~~lv~~~--------------------------~g~~~~~A~s~vCTHlGC~l~~~~~-~~~~~CPcHGS~Fd~~G~v~ 190 (200)
|++|++.. ++++ +|++++|||+||++.++.. .+.|+||||||+||++|+++
T Consensus 95 pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~--~a~~~~CtH~G~~l~~~~~~~~~~~CP~HGs~FD~~G~v~ 172 (196)
T 1pp9_E 95 PLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEW--VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIR 172 (196)
T ss_dssp EEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTE--EEEECCCTTTSCCCEETCSTTSSEEETTTTEEECTTCCEE
T ss_pred EEEEEECCHHHHhhhhccccccccCcccccccccCCeE--EEEECccCCCCeeccccCCCCCEEEeCCCCCEECCCCCCc
Confidence 88888752 5565 8999999999999987653 47899999999999999999
Q ss_pred cCCCCCCCCC
Q 028988 191 RGPAPLVSNT 200 (200)
Q Consensus 191 ~GPAp~pL~~ 200 (200)
.||++++|++
T Consensus 173 ~gPa~~~L~~ 182 (196)
T 1pp9_E 173 KGPAPLNLEV 182 (196)
T ss_dssp ESSCCSCCCC
T ss_pred cCCCCCCCcc
Confidence 9999999974
No 5
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.84 E-value=7.1e-22 Score=156.58 Aligned_cols=109 Identities=81% Similarity=1.395 Sum_probs=77.8
Q ss_pred cCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccccccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCC
Q 028988 92 FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAE 171 (200)
Q Consensus 92 l~Pp~~~~~~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~ 171 (200)
|+||..+.++++.+.++..|+.|.+.+|+.+..++.........+++++++++.+|++.+||++++|||+||+|.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~~~ 80 (139)
T 1rfs_A 1 FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE 80 (139)
T ss_dssp ------------CBCBCTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEETTT
T ss_pred CcCCccCcccceEEeecCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCCCC
Confidence 46787778888899999999998877765543333332222345677888888888765589999999999999987777
Q ss_pred CeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 172 NKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 172 ~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
+.|.||||||+||.+|+++.+|++++|++
T Consensus 81 ~~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~ 109 (139)
T 1rfs_A 81 NKFICPCHGSQYNNQGRVVRGPAPLSLAL 109 (139)
T ss_dssp TEEECTTTCCEEETTCCEEESSCCSCCCE
T ss_pred CEEEcCCCCCEECCCCCCccCCCCCCCCE
Confidence 89999999999999999999999998863
No 6
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.81 E-value=1.2e-20 Score=155.17 Aligned_cols=63 Identities=24% Similarity=0.460 Sum_probs=55.1
Q ss_pred CCCeEEEEe---------cCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCCC--CeeccCCCCCCCCC
Q 028988 136 GDPTYLVVE---------KDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ--GRVVRGPAPLVSNT 200 (200)
Q Consensus 136 g~p~~lv~~---------~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~~--G~v~~GPAp~pL~~ 200 (200)
++|++|++. .+|++ +|++++|||+||+|.|+.+++.|.||||||+||++ |+++.||+.++|++
T Consensus 74 ~~pv~v~R~g~~~~~~r~~~G~v--~A~~n~CpH~G~~L~~g~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L~~ 147 (175)
T 4aay_B 74 DAAGVLLKLGTRVEGGVGPDGDI--VGFSTICPHKGFPLSYSADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQ 147 (175)
T ss_dssp TSEEEEEECSSCCTTCBTTTTCE--EEEECBCTTTCCBCEEETTTTEEECTTTCCEEEGGGTTEEEECSCSSCCCB
T ss_pred CCEEEEEEcccccccccCCCCEE--EEEeCCCCCCCCCCccCCCCCEEEcCCCCCEECCCCCceEecCCCCCCcCE
Confidence 357888875 36776 89999999999999998777899999999999984 99999999999874
No 7
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.74 E-value=1.3e-18 Score=138.56 Aligned_cols=53 Identities=40% Similarity=0.745 Sum_probs=46.3
Q ss_pred CCceeEEEEeccCCCCCccCCC-CC-CCCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 146 DKTLASYGINAVCTHLGCVVPW-NS-AENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 146 ~g~~~~~A~s~vCTHlGC~l~~-~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
++++ +|++++|||+||+|.+ .. +.+.|+||||||+||++|+++.||++++|++
T Consensus 73 ~g~~--~a~~~~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~ 127 (141)
T 2nwf_A 73 AGEW--LVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPENLPI 127 (141)
T ss_dssp TSCE--EEEECCCTTTCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCSCCCB
T ss_pred CCcE--EEEeCcCCCCCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCCCCCc
Confidence 4555 8999999999999988 43 3478999999999999999999999999863
No 8
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.59 E-value=1.3e-19 Score=143.18 Aligned_cols=100 Identities=64% Similarity=1.237 Sum_probs=79.6
Q ss_pred CCCceeecCCCCceeeecccccCCCCCcccccccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCC
Q 028988 101 GGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHG 180 (200)
Q Consensus 101 ~~~~v~vd~~g~~i~~~~W~~~~~P~~~~~~~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHG 180 (200)
+++.+++|+.|++|...+++....+++......+.+++.+++++.+|++.+||++++|+|+||+|.++.+++.|.|||||
T Consensus 4 ~~~~~~~~~~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~~~~~i~CP~Hg 83 (133)
T 3azc_A 4 EGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHG 83 (133)
Confidence 35677899999999888877665555544333334566777777778733489999999999999987767899999999
Q ss_pred eeeCCCCeeccCCCCCCCCC
Q 028988 181 SQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 181 S~Fd~~G~v~~GPAp~pL~~ 200 (200)
|+||.+|+++.+|+..+|++
T Consensus 84 ~~Fd~tG~~~~~P~~~~L~~ 103 (133)
T 3azc_A 84 SQYDSTGKVVRGPAPLSLAL 103 (133)
Confidence 99999999999999888763
No 9
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.72 E-value=3.2e-18 Score=133.65 Aligned_cols=53 Identities=43% Similarity=0.858 Sum_probs=47.2
Q ss_pred CCceeEEEEeccCCCCCccCCCCCC-CCeEEcCCCCeeeCCCCeeccCCCCCCCCC
Q 028988 146 DKTLASYGINAVCTHLGCVVPWNSA-ENKFICPCHGSQYNNQGRVVRGPAPLVSNT 200 (200)
Q Consensus 146 ~g~~~~~A~s~vCTHlGC~l~~~~~-~~~~~CPcHGS~Fd~~G~v~~GPAp~pL~~ 200 (200)
+|++ +|++++|||+||+|.++.. .+.|.||||||+||++|+++.||++.+|++
T Consensus 62 ~g~~--~a~~~~C~H~g~~l~~g~~~~~~i~CP~Hg~~fd~~G~~~~~P~~~~l~~ 115 (129)
T 1rie_A 62 KPEW--VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 115 (129)
T ss_dssp STTE--EEEECCCTTTSCCCEETCTTTEEEEETTTTEEEETTCCEEESSCCSCCCC
T ss_pred CCeE--EEEECccCCCCeecccccCCCCEEEcCCCCCEEcCCCCEeeCCCCCCCCc
Confidence 6776 8999999999999987653 478999999999999999999999999864
No 10
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.69 E-value=1.9e-17 Score=129.80 Aligned_cols=63 Identities=27% Similarity=0.644 Sum_probs=55.7
Q ss_pred CCCeEEEEec---------CCceeEEEEeccCCCCCccCCCCCCCCeEEcCCCCeeeCC--CCeeccCCCCCCCCC
Q 028988 136 GDPTYLVVEK---------DKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNN--QGRVVRGPAPLVSNT 200 (200)
Q Consensus 136 g~p~~lv~~~---------~g~~~~~A~s~vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~--~G~v~~GPAp~pL~~ 200 (200)
+++++|++.. +|++ +|++++|||+||+|.|..+++.|.||||||+||+ +|+++.||++++|++
T Consensus 31 g~~v~v~r~~~~~~~~~~~~g~~--~A~~n~CpH~g~~L~~~~~~~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~ 104 (133)
T 1g8k_B 31 SSPCVAVKLGAPVPGGVGPDDDI--VAYSVLCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPR 104 (133)
T ss_dssp TSEEEEEECSSCCTTCBTTTTCE--EEEECBCTTTCCBCEEETTTTEEECTTTCCEEEGGGTTEEEESSCSSCCCE
T ss_pred CceEEEEEccccccccccCCCEE--EEEeCcCCCCCCCCCcccCCCEEECCCCCCEECCCCCCCEEcCCCCCCCCE
Confidence 6778888864 6776 8999999999999998767789999999999999 899999999999863
No 11
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.67 E-value=4.6e-17 Score=121.07 Aligned_cols=63 Identities=17% Similarity=0.382 Sum_probs=55.0
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..+++++|++ .+|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+
T Consensus 23 ~~g~~i~v~r-~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P~~~~L~ 87 (103)
T 2qpz_A 23 VEGKELALYE-VEGEI--YATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIK 87 (103)
T ss_dssp ETTEEEEEEE-ETTEE--EEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETTCCSCCC
T ss_pred ECCEEEEEEE-ECCEE--EEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCCCCCCCC
Confidence 4567788887 67876 899999999999998764 5689999999999998 99999999988886
No 12
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.66 E-value=9.4e-17 Score=120.10 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=55.5
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
...+++++|++ .+|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|++
T Consensus 20 ~~~g~~i~v~r-~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~ 86 (106)
T 3dqy_A 20 EGGPEPVMVCN-VDGEF--FAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKV 86 (106)
T ss_dssp CCSSSCEEEEE-ETTEE--EEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCE
T ss_pred EECCEEEEEEE-ECCEE--EEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCCCCCCccE
Confidence 45567888886 57776 899999999999998753 5679999999999997 999999999988863
No 13
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.65 E-value=1.3e-16 Score=119.71 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=54.9
Q ss_pred ccCCCC-eEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 133 GLKGDP-TYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 133 ~~~g~p-~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
...+++ ++|++. +|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+
T Consensus 22 ~~~g~~~v~v~r~-~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~ 88 (108)
T 2i7f_A 22 YQEKMPALAVYNV-DGEV--FVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIK 88 (108)
T ss_dssp CCTTSSCEEEEEE-TTEE--EEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCSTTCCSCCC
T ss_pred EECCeeEEEEEEE-CCEE--EEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCCCCCCCcc
Confidence 345677 888876 7876 899999999999998753 4679999999999997 99999999988886
No 14
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.65 E-value=1.5e-16 Score=122.41 Aligned_cols=65 Identities=20% Similarity=0.448 Sum_probs=55.7
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCC---CCCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN---SAENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~---~~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
...+++++|++. +|++ +|++++|||+||+|.++ .+++.|.||||||+||+ +|+++.+|+..+|++
T Consensus 29 ~~~g~~v~v~r~-~g~~--~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~ 97 (121)
T 3gce_A 29 DVDGDEVMVVRD-GDSV--YAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRA 97 (121)
T ss_dssp EETTEEEEEEEE-TTEE--EEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEETTCCSCCCB
T ss_pred EECCEEEEEEEE-CCEE--EEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeCCCCcCCcce
Confidence 345677888874 7776 89999999999999876 35689999999999997 999999999988863
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.65 E-value=1.4e-16 Score=120.36 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=54.6
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCC-C-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWN-S-AENKFICPCHGSQYNN-QGRVVRGPAPLVSNT 200 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~-~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~~ 200 (200)
..+++++|++. +|++ +|++++|||+||+|.++ . +++.|.||||||+||+ ||+++.+|+..+|++
T Consensus 25 ~~g~~i~v~r~-~g~~--~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~ 91 (112)
T 1fqt_A 25 SGGTSVAIFNV-DGEL--FATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKI 91 (112)
T ss_dssp ETTEEEEEEEE-TTEE--EEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEESSCCSCCCB
T ss_pred ECCEEEEEEEE-CCEE--EEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCCCCCCCccE
Confidence 45677888876 7776 89999999999999876 2 4678999999999999 899999999888863
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.62 E-value=4e-16 Score=117.58 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=53.6
Q ss_pred CCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 135 ~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
.+++++|++..+|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++. |+..+|+
T Consensus 23 ~g~~v~v~r~~~g~~--~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~ 86 (111)
T 1vm9_A 23 DGTEVLIVNSEEHGV--KAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALA 86 (111)
T ss_dssp TCCEEEEEEETTTEE--EEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-SSSCBCC
T ss_pred CCCEEEEEEeCCCeE--EEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-CCcCCcC
Confidence 567888888768877 899999999999998764 4679999999999999 699998 9888875
No 17
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.60 E-value=5.4e-16 Score=118.11 Aligned_cols=63 Identities=21% Similarity=0.372 Sum_probs=54.2
Q ss_pred cCCC-CeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGD-PTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~-p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..++ +++|++. +|++ +|++++|||+||+|.++. +++.|.||||||+||+ +|+++.+|+..+|+
T Consensus 24 ~~g~~~v~v~r~-~g~~--~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~ 89 (115)
T 2de6_D 24 RVGAAPLAVYRV-GDQF--YATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLG 89 (115)
T ss_dssp ETTEEEEEEEEE-TTEE--EEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCC
T ss_pred ECCccEEEEEEE-CCEE--EEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeCCCCcCCCC
Confidence 4566 7888876 7776 899999999999998753 4679999999999998 99999999988886
No 18
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.52 E-value=6.5e-15 Score=111.22 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=51.1
Q ss_pred cCCCCeEEEEecCC-ceeEEEEeccCCCCCc-cCCCCC-C---CC-eEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDK-TLASYGINAVCTHLGC-VVPWNS-A---EN-KFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~p~~lv~~~~g-~~~~~A~s~vCTHlGC-~l~~~~-~---~~-~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..+++++|++..+| ++ ||++++|||+|| +|.++. + +. .|.|||||++||+ +|+++.+|+ .+|+
T Consensus 26 ~~g~~i~v~r~~~g~~~--~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~ 96 (113)
T 2jo6_A 26 LGDEQVAIFRPYHSDQV--FAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVK 96 (113)
T ss_dssp ETTEEEEEEECSSSSCC--EEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTTTT-TCCC
T ss_pred ECCEEEEEEEECCCCEE--EEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCccCCCCCc-cccc
Confidence 45677888886577 57 899999999999 687653 1 22 7999999999999 999999997 6664
No 19
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.51 E-value=8.2e-15 Score=123.02 Aligned_cols=52 Identities=42% Similarity=0.893 Sum_probs=45.6
Q ss_pred CCceeEEEEeccCCCCCccCCCC------------CCCCeEEcCCCCeeeCCC--CeeccCCCCCCCC
Q 028988 146 DKTLASYGINAVCTHLGCVVPWN------------SAENKFICPCHGSQYNNQ--GRVVRGPAPLVSN 199 (200)
Q Consensus 146 ~g~~~~~A~s~vCTHlGC~l~~~------------~~~~~~~CPcHGS~Fd~~--G~v~~GPAp~pL~ 199 (200)
++++ +|++++|||+||+|.++ .+++.|.||||||+||++ |+++.||++++|+
T Consensus 84 ~g~i--~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~~~L~ 149 (204)
T 1jm1_A 84 NGTI--FAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLP 149 (204)
T ss_dssp TTCE--EEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCC
T ss_pred CCEE--EEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCCCCCC
Confidence 5666 89999999999999875 246789999999999995 6999999999886
No 20
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.50 E-value=7.2e-15 Score=112.47 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=51.2
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCc-cCCCCC-C---C-CeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGC-VVPWNS-A---E-NKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC-~l~~~~-~---~-~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..+++++|++..+|++ ||++++|||+|| +|..+. + + ..|.||||||+||+ +|+++.+|+ .+|+
T Consensus 25 ~~g~~v~v~r~~~G~~--~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~ 94 (119)
T 3c0d_A 25 IEGERVALFYIPDSGV--YAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEA-HCLK 94 (119)
T ss_dssp ETTEEEEEEEETTTEE--EEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSSCTT-CBCC
T ss_pred ECCeEEEEEEecCCeE--EEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCCcCCCCCC-ceee
Confidence 4567788888768876 899999999999 687542 1 1 28999999999999 999999997 5664
No 21
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.49 E-value=7.7e-15 Score=119.40 Aligned_cols=49 Identities=45% Similarity=1.014 Sum_probs=43.2
Q ss_pred EEEEeccCCCCCccCC-CCCCCCeEEcCCCCeeeCC-CCe-eccCCCCCCCC
Q 028988 151 SYGINAVCTHLGCVVP-WNSAENKFICPCHGSQYNN-QGR-VVRGPAPLVSN 199 (200)
Q Consensus 151 ~~A~s~vCTHlGC~l~-~~~~~~~~~CPcHGS~Fd~-~G~-v~~GPAp~pL~ 199 (200)
++|++++|||+||.|. +..+.+.|.||||||+||+ +|. ++.||++.+|+
T Consensus 80 v~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~ 131 (165)
T 1nyk_A 80 VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVP 131 (165)
T ss_dssp EEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCC
T ss_pred EEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCc
Confidence 4899999999999997 4455679999999999999 585 99999999986
No 22
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.47 E-value=5e-14 Score=109.57 Aligned_cols=63 Identities=8% Similarity=0.138 Sum_probs=50.1
Q ss_pred cCCCCeEEEEecCC-ceeEEEEeccCCCCCcc-CCCCC----CC-CeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 134 LKGDPTYLVVEKDK-TLASYGINAVCTHLGCV-VPWNS----AE-NKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 134 ~~g~p~~lv~~~~g-~~~~~A~s~vCTHlGC~-l~~~~----~~-~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
..+++++|++..+| ++ +|++++|||+||. |..+. ++ ..|.||||||+||+ +|+++.+|+ .+|+
T Consensus 23 ~~g~~i~v~r~~~g~~v--~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~ 93 (130)
T 2jza_A 23 VEQQQIAVFRPRNDEQV--YAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGA-YSVA 93 (130)
T ss_dssp ETTEEEEEEBCSSSSCC--EEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSSCCS-SCCB
T ss_pred ECCcEEEEEEECCCCEE--EEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCcCCCCCCc-Ccce
Confidence 35667777776466 66 8999999999995 87652 12 38999999999999 999999997 5664
No 23
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.42 E-value=1.9e-13 Score=105.33 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=50.3
Q ss_pred CCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC------CCCeEEcCCCCeeeCC-CCeeccCCCCCCCC
Q 028988 135 KGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS------AENKFICPCHGSQYNN-QGRVVRGPAPLVSN 199 (200)
Q Consensus 135 ~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~------~~~~~~CPcHGS~Fd~-~G~v~~GPAp~pL~ 199 (200)
.|+++.|++..+|++ ||+++.|+|+|++|..+. ++..+.||+||++||+ ||+++.+|+. +|+
T Consensus 31 ~G~~v~l~r~~dG~v--~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-~l~ 99 (119)
T 4aiv_A 31 DGSQVALFRLDDGSV--HAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRV-SVP 99 (119)
T ss_dssp TSCEEEEEECTTSCE--EEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTTCBBSSCTTC-BCC
T ss_pred CCcEEEEEEcCCCeE--EEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCCCcCcCCCCC-ccc
Confidence 467888888778876 899999999999986542 1235999999999997 9999999873 443
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.29 E-value=1.2e-12 Score=104.42 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=45.8
Q ss_pred cCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-C---C-CeEEcCCCCeeeCC-CCeecc
Q 028988 134 LKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-A---E-NKFICPCHGSQYNN-QGRVVR 191 (200)
Q Consensus 134 ~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~---~-~~~~CPcHGS~Fd~-~G~v~~ 191 (200)
..+++++|++ .+|++ +|++++|+|+|++|.++. + + +.|.||||||+||+ +|+++.
T Consensus 36 ~~g~~i~v~r-~~G~v--~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~tG~~~~ 96 (157)
T 3d89_A 36 VHDREVVIFY-HKGEY--HAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLY 96 (157)
T ss_dssp ETTEEEEEEE-ETTEE--EEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTTCEEEE
T ss_pred ECCEEEEEEE-ECCEE--EEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCCcCEEE
Confidence 4566788887 57876 899999999999998753 2 1 57999999999999 999875
No 25
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.26 E-value=3.6e-12 Score=113.50 Aligned_cols=60 Identities=20% Similarity=0.421 Sum_probs=52.2
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPA 194 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPA 194 (200)
...|++++|++..+|++ +|+.++|+|+|++|.++. +++.|.|||||++||.+|+++.+|.
T Consensus 26 ~~~g~~vvv~R~~~G~v--~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~~~~~P~ 86 (349)
T 3gke_A 26 TILDTPLALYRQPDGVV--AALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQCVHNPH 86 (349)
T ss_dssp EETTEEEEEEECTTSCE--EEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCCEEECCS
T ss_pred EECCEEEEEEEcCCCcE--EEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCCccccCc
Confidence 35677888888778887 899999999999998753 4679999999999999999999994
No 26
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.26 E-value=4e-12 Score=114.65 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=53.5
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
....|++++|+++.+|++ +|+.++|+|+|++|.++. +++.|.|||||++||.+|+++.+|+.
T Consensus 43 ~~~~g~~vvl~R~~~G~v--~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~~~~~P~~ 105 (386)
T 2zyl_A 43 VEAFGTKLVVFADSHGDL--KVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGRCKLVPYA 105 (386)
T ss_dssp EEETTEEEEEEECTTSCE--EEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSBEEECTTC
T ss_pred EEECCeEEEEEECCCCCE--EEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCCccccCcc
Confidence 345678888888778887 899999999999998753 45799999999999999999999974
No 27
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.19 E-value=1.7e-11 Score=112.40 Aligned_cols=62 Identities=23% Similarity=0.399 Sum_probs=52.8
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAPL 196 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp~ 196 (200)
...+++++|+++.+|++ +|+.++|+|+|+.|.++. ..+.|.|||||++||++|+++.+|+..
T Consensus 57 ~~~~~~vvv~R~~~G~v--~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~ 120 (454)
T 2gbw_A 57 YMAEDKVILSHQSDGTF--RAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLES 120 (454)
T ss_dssp EETTEEEEEEECTTSCE--EEEESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTT
T ss_pred EECCeEEEEEEcCCCCE--EEEeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCccc
Confidence 34567788888778887 899999999999998754 356899999999999999999999754
No 28
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.19 E-value=1.3e-11 Score=113.73 Aligned_cols=61 Identities=28% Similarity=0.465 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC-C-CCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS-A-ENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~-~-~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
...+++++|+++.+|++ +|+.++|+|+|+.|.++. + .+.|.|||||++||.+|+++.+|+.
T Consensus 65 ~~~g~~vvv~R~~~G~v--~a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~ 127 (470)
T 2b1x_A 65 YISEDQFIVCRDEGGEI--RGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAG 127 (470)
T ss_dssp EETTEEEEEEECTTSCE--EEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTT
T ss_pred EECCeEEEEEEcCCCCE--EEEecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcc
Confidence 45677888888878887 899999999999998764 2 3689999999999999999999974
No 29
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=99.19 E-value=8e-12 Score=83.19 Aligned_cols=46 Identities=43% Similarity=0.866 Sum_probs=37.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHhHHHHHHhhccceeccCCCCCCCCC
Q 028988 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAG 101 (200)
Q Consensus 56 ~~~~~pd~~RR~FL~~~~~G~~al~~~~~~~P~~~~l~Pp~~~~~~ 101 (200)
+.+++|||+||+||+++++|++++.++++++|+++|++||.....+
T Consensus 2 ~~~~~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg~g 47 (49)
T 1q90_R 2 ASSEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGG 47 (49)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC------
T ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCCCC
Confidence 3568999999999999999999999999999999999999765433
No 30
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.18 E-value=1.5e-11 Score=112.29 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=51.4
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCC-CCeeccCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~-~G~v~~GPA 194 (200)
....|++++|++ .+|++ +|+.++|+|+||.|.++. .++.|.|||||++||+ +|+++.+|+
T Consensus 52 v~i~G~~VvV~R-~dG~v--~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~ 115 (394)
T 3gcf_A 52 VTMLGEKVLLTR-AKGEV--KAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLT 115 (394)
T ss_dssp EEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTTCBEEEETT
T ss_pred EEECCEEEEEEE-eCCeE--EEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCCCceeccCC
Confidence 345678888888 68887 899999999999998764 4679999999999999 999998875
No 31
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.18 E-value=1.7e-11 Score=111.99 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=52.8
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCC-CC-CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPW-NS-AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~-~~-~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
....+++++|+++.+|++ +|+.++|+|.|+.|.+ +. ..+.|.||+||++||++|+++.+|+.
T Consensus 60 ~~i~g~~vvv~R~~dG~v--~A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~ 123 (409)
T 3n0q_A 60 HQVGNYNVIIVRGADNVI--RAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDM 123 (409)
T ss_dssp EEETTEEEEEEECTTSCE--EEEESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTC
T ss_pred EEECCEEEEEEEcCCCCE--EeecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcC
Confidence 345678899998888887 8999999999999986 32 35789999999999999999999863
No 32
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.18 E-value=2.1e-11 Score=112.20 Aligned_cols=61 Identities=25% Similarity=0.441 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCCC--CCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSA--ENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~~--~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
...+++++|++..+|++ +|+.++|+|+|+.|.++.. .+.|.|||||++||++|+++.+|+.
T Consensus 75 ~i~~~~vvv~R~~~G~v--~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~ 137 (460)
T 1uli_A 75 YMGEDPVMVVRQKNGEI--RVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFE 137 (460)
T ss_dssp EETTEEEEEEECTTSCE--EEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTH
T ss_pred EECCeEEEEEEcCCCCE--EEEeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCcc
Confidence 34567788888778887 8999999999999987642 4689999999999999999999973
No 33
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.18 E-value=1.5e-11 Score=112.17 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=51.1
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCC-CCeeccCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~-~G~v~~GPA 194 (200)
....|++++|++ .+|++ +|+.++|+|+||+|.++. +++.|.|||||++||+ +|+++..|+
T Consensus 49 v~i~G~~VvV~R-~dG~v--~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~ 112 (389)
T 3gkq_A 49 VQLLGEKVLLNR-VDGVV--HAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILT 112 (389)
T ss_dssp EEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTTCBEEEETT
T ss_pred EEECCEEEEEEE-eCCeE--EEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCCCCeecccC
Confidence 345677888888 68876 899999999999998764 4679999999999998 999998765
No 34
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.17 E-value=1.8e-11 Score=110.15 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=50.6
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCC-CCeeccCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~-~G~v~~GPA 194 (200)
....|++++|++ .+|++ +|+.++|+|+|++|.++. +++.|.|||||++||. +|+++..|.
T Consensus 46 ~~~~g~~vvl~R-~~G~v--~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G~~~~~p~ 109 (392)
T 2de6_A 46 LKLLGENLLVNR-IDGKL--YCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILT 109 (392)
T ss_dssp EEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETT
T ss_pred EEECCEEEEEEE-eCCEE--EEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCCccccccC
Confidence 345677888888 58876 899999999999998754 3589999999999998 999998764
No 35
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.16 E-value=2.4e-11 Score=111.05 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=52.3
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
...+++++|+++.+|++ +|+.++|+|+|+.|.++. ..+.|.||+||++||++|+++..|+.
T Consensus 56 ~~~~~~vvv~R~~~G~v--~a~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~ 118 (447)
T 2bmo_A 56 KMGVDEVIVSRQNDGSV--RAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFE 118 (447)
T ss_dssp EETTEEEEEEECTTSCE--EEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTH
T ss_pred EECCeeEEEEECCCCCE--EEEeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcc
Confidence 34567888888888887 899999999999998764 24789999999999999999999863
No 36
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.15 E-value=2.3e-11 Score=111.53 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=50.7
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC---CCCeEEcCCCCeeeCC-CCeeccCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS---AENKFICPCHGSQYNN-QGRVVRGPA 194 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~---~~~~~~CPcHGS~Fd~-~G~v~~GPA 194 (200)
....+++++|++ .+|++ +|+.++|+|+|+.|.++. +++.|.|||||++||+ +|+++.+|+
T Consensus 61 ~~~~g~~vvl~r-~~G~v--~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~ 124 (446)
T 1z01_A 61 IQICGVPIVLRR-VNGKV--FALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVA 124 (446)
T ss_dssp EEETTEEEEEEE-ETTEE--EEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETT
T ss_pred EEECCEEEEEEE-eCCEE--EEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCC
Confidence 345677888887 68876 899999999999998764 4589999999999998 999998864
No 37
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.15 E-value=3.4e-11 Score=110.03 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=52.6
Q ss_pred cccCCCCeEEEEecCCceeEEEEeccCCCCCccCCC-C-CCCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPW-N-SAENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 132 ~~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~-~-~~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
....+++++|+++.+|++ +|+.++|+|.|+.|.+ + .+.+.|.||+||++||++|+++.+|+.
T Consensus 62 ~~i~g~~vvv~R~~dG~v--~A~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~ 125 (412)
T 3vca_A 62 LRVGAYEVVIVRSRDGEV--RAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDM 125 (412)
T ss_dssp EEETTEEEEEEECTTSCE--EEEESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTC
T ss_pred EEECCEEEEEEEcCCCCE--EEecccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCcc
Confidence 345678899998878887 8999999999999974 3 245789999999999999999999863
No 38
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.12 E-value=4.7e-11 Score=110.53 Aligned_cols=61 Identities=26% Similarity=0.473 Sum_probs=52.8
Q ss_pred ccCCCCeEEEEecCCceeEEEEeccCCCCCccCCCCC--CCCeEEcCCCCeeeCCCCeeccCCCC
Q 028988 133 GLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNS--AENKFICPCHGSQYNNQGRVVRGPAP 195 (200)
Q Consensus 133 ~~~g~p~~lv~~~~g~~~~~A~s~vCTHlGC~l~~~~--~~~~~~CPcHGS~Fd~~G~v~~GPAp 195 (200)
...+++++|+++.+|++ +|+.++|+|.|+.|..+. ..+.|.||+||++||.+|+++..|+.
T Consensus 77 ~i~~~~vvv~R~~dG~v--~A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~ 139 (457)
T 3gzx_A 77 YMGEDPVIMVRQKDQSI--KVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFE 139 (457)
T ss_dssp EETTEEEEEEECTTSCE--EEEESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTH
T ss_pred EECCEEEEEEECCCCeE--EEEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCcc
Confidence 45667888898888887 799999999999998753 45789999999999999999999973
No 39
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=94.16 E-value=0.029 Score=34.30 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHHHh
Q 028988 62 DMGKRQLMNLLLLGAV 77 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~ 77 (200)
.++||+||+....+++
T Consensus 2 ~lsRR~FLK~~aaa~A 17 (35)
T 2pq4_B 2 KLSRRSFMKANAVAAA 17 (35)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4789999997654333
No 40
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=63.87 E-value=1.4 Score=40.85 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHHH
Q 028988 58 DRVPDMGKRQLMNLLLL 74 (200)
Q Consensus 58 ~~~pd~~RR~FL~~~~~ 74 (200)
.|.|+|+||+||+...+
T Consensus 7 ~~~~~~~rr~~~~~~~~ 23 (473)
T 2w0y_A 7 TESPSVDRRTFLAGLSG 23 (473)
T ss_dssp -----------------
T ss_pred CCCCCchHHHHhcccch
Confidence 47789999999998663
No 41
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=56.82 E-value=2.3 Score=37.48 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHhHHHH
Q 028988 62 DMGKRQLMNLLLLGAVSLPT 81 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~al~~ 81 (200)
.++||+||++....++++++
T Consensus 2 ~~srr~f~k~~~~~~a~~~l 21 (317)
T 2wpn_A 2 SLTRRDFVKLCTGTVAGFGI 21 (317)
T ss_dssp --------------------
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 47899999998655554443
No 42
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=55.56 E-value=2.5 Score=37.29 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhHHHHH
Q 028988 61 PDMGKRQLMNLLLLGAVSLPTG 82 (200)
Q Consensus 61 pd~~RR~FL~~~~~G~~al~~~ 82 (200)
..++||+||++....+++++..
T Consensus 19 ~~~sRr~F~k~~~~~~a~~~l~ 40 (317)
T 1h2a_S 19 RGVSRRDFLKFCTAIAVTMGMG 40 (317)
T ss_dssp ----------------------
T ss_pred cCCCHHHHHHHHHHHHHHhcCC
Confidence 3689999999986555544433
No 43
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=39.33 E-value=6.3 Score=37.63 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHH
Q 028988 63 MGKRQLMNLLLLG 75 (200)
Q Consensus 63 ~~RR~FL~~~~~G 75 (200)
++||+||+.+..+
T Consensus 1 ~sRR~FLK~~~a~ 13 (765)
T 2vpz_A 1 MQRREFLKLSALG 13 (765)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 5899999986543
No 44
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=37.03 E-value=7.2 Score=38.79 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHH
Q 028988 62 DMGKRQLMNLLLLGA 76 (200)
Q Consensus 62 d~~RR~FL~~~~~G~ 76 (200)
.++||+||+.+..++
T Consensus 2 ~~sRR~FLK~~~a~~ 16 (1015)
T 1kqf_A 2 DVSRRQFFKICAGGM 16 (1015)
T ss_dssp ---------------
T ss_pred CCCHHHHHHHHHHHH
Confidence 478999999865433
No 45
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=35.25 E-value=8 Score=38.25 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHh
Q 028988 62 DMGKRQLMNLLLLGAV 77 (200)
Q Consensus 62 d~~RR~FL~~~~~G~~ 77 (200)
.++||+||+.+..+++
T Consensus 18 ~~sRR~Flk~~~~~~a 33 (976)
T 2ivf_A 18 DQHRRDFLKRSGAAVL 33 (976)
T ss_dssp ----------------
T ss_pred CccHHHHHHHHHHHHH
Confidence 4789999998654443
No 46
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=33.62 E-value=8.8 Score=36.93 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHH
Q 028988 63 MGKRQLMNLLLLG 75 (200)
Q Consensus 63 ~~RR~FL~~~~~G 75 (200)
++||+||+.+..+
T Consensus 1 ~~RR~Flk~~~~~ 13 (829)
T 1tmo_A 1 MNRRDFLKGIASS 13 (829)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 5899999985443
No 47
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.37 E-value=32 Score=23.47 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=26.5
Q ss_pred cCCCCCccCCCCCCCCeEEcCCCCeeeCC-CCeecc
Q 028988 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVVR 191 (200)
Q Consensus 157 vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~-~G~v~~ 191 (200)
+|+-=+..+.+..+++.+.|+--|-.|.. +|..+-
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvm 45 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVM 45 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEEEEETTEECC
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEecCcCCeeee
Confidence 46655666666666789999999999998 887553
No 48
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=25.14 E-value=15 Score=32.58 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhH
Q 028988 63 MGKRQLMNLLLLGAVS 78 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~a 78 (200)
+.||+||+.+.+++++
T Consensus 27 ~~rr~fl~~~~~~~a~ 42 (433)
T 1h6d_A 27 NLNRRALVGGGVGLAA 42 (433)
T ss_dssp ----------------
T ss_pred hhhhHHHhhcchhhhh
Confidence 4599999986544433
No 49
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=24.67 E-value=16 Score=29.97 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhccceec
Q 028988 63 MGKRQLMNLLLLGAVSLPTGFMLVPYATF 91 (200)
Q Consensus 63 ~~RR~FL~~~~~G~~al~~~~~~~P~~~~ 91 (200)
.+||.||.+++..+.+++ +.-+.|+.+.
T Consensus 22 tsRRs~l~~lG~~l~g~a-~~PlLPV~R~ 49 (188)
T 3c75_L 22 TSRRGAIGRLGTVLAGAA-LVPLLPVDRR 49 (188)
T ss_dssp -----------------------------
T ss_pred cchHHHHHHHHHHHhhhh-hccccccccc
Confidence 589999999765444333 3344566544
No 50
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=23.58 E-value=27 Score=19.44 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHHHH
Q 028988 62 DMGKRQLMNLLLLGA 76 (200)
Q Consensus 62 d~~RR~FL~~~~~G~ 76 (200)
|++||-||.-++.+.
T Consensus 6 ~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 6 DLRRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 578999999877553
No 51
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.84 E-value=44 Score=22.70 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=28.2
Q ss_pred cCCCCCccCCCCCCCCeEEcCCCCeeeCC-CCeeccC
Q 028988 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVVRG 192 (200)
Q Consensus 157 vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~-~G~v~~G 192 (200)
+|+.-..++.+..+++.++|+--|-.|-. +|..+--
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL 48 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLL 48 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCC
T ss_pred CCCCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeC
Confidence 47776777777667789999988999998 8876543
No 52
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.34 E-value=49 Score=22.46 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=27.6
Q ss_pred cCCCCCccCCCCCCCCeEEcCCCCeeeCC-CCeecc
Q 028988 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVVR 191 (200)
Q Consensus 157 vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~-~G~v~~ 191 (200)
+|+.=+-++.+..+++.+.|+--|-.|.. +|..+-
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMM 45 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECC
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeee
Confidence 57766677777666789999988999998 887653
No 53
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.72 E-value=51 Score=22.38 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=27.4
Q ss_pred cCCCCCccCCCCCCCCeEEcCCCCeeeCC-CCeeccC
Q 028988 157 VCTHLGCVVPWNSAENKFICPCHGSQYNN-QGRVVRG 192 (200)
Q Consensus 157 vCTHlGC~l~~~~~~~~~~CPcHGS~Fd~-~G~v~~G 192 (200)
+|+.=+-++.+..+.+.+.|+--|-.|.. +|..+--
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL 46 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYML 46 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEEEEETTEECCC
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeC
Confidence 46666667766666789999988999998 8976543
Done!