BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028989
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana
GN=DI19-4 PE=1 SV=1
Length = 224
Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/168 (63%), Positives = 134/168 (79%), Gaps = 5/168 (2%)
Query: 25 DLFIGGGYDETDGDDDLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVG 84
DL++GGGY++ +G+DDL A F+CPFCAEDFDIVGLCCHIDE+HP+EAKNGVCPVC KRVG
Sbjct: 27 DLYLGGGYEDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVG 86
Query: 85 TDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNT 144
DIV HIT QH NFFK+QR+RRLRRGG +ST+ L+KELR+ NLQSLLGGSS F SS+N
Sbjct: 87 LDIVGHITTQHANFFKVQRRRRLRRGGYSSTYLALKKELREANLQSLLGGSSSFTSSTNI 146
Query: 145 EADPLLSSFIFNTPKVDEPL--SVQPLSITEPTL---VKESSNENLHE 187
++DPLLSSF+FN+P V++ S P+++ +KES ++ E
Sbjct: 147 DSDPLLSSFMFNSPSVNQSANKSATPVTVGNAATKVSIKESLKRDIQE 194
>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana
GN=DI19-7 PE=1 SV=2
Length = 211
Score = 197 bits (500), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 139/202 (68%), Gaps = 13/202 (6%)
Query: 1 MESNLWSN--RLSTASSRRYHHQSRSDLFIGGGYDETDGDDDLNAMFLCPFCAEDFDIVG 58
M+SN W N + ++S +QSRSDL++G + +G+DDL A F+CPFCA++FDIVG
Sbjct: 1 MDSNSWINCPPVFSSSPSSRRYQSRSDLYLG----DVEGEDDLKAEFMCPFCADEFDIVG 56
Query: 59 LCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSL 118
LCCHID +HP+EAKNGVCPVC K+VG DIV HIT QHGN FK+QR+RRLR+GG +ST+
Sbjct: 57 LCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGYSSTYLT 116
Query: 119 LRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNTPKV------DEPLSVQPLSIT 172
L+KELR+ NLQS LGGSS F+ SSN ++DPLLSSF+F P D V P +
Sbjct: 117 LKKELREANLQS-LGGSSTFIPSSNIDSDPLLSSFMFKPPSAIPITEGDSVAQVSPKDTS 175
Query: 173 EPTLVKESSNENLHERYVNRHF 194
+ + +ES + E+ F
Sbjct: 176 KSKIQQESFSNEDQEKAKKSKF 197
>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana
GN=DI19-3 PE=1 SV=1
Length = 223
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 134/197 (68%), Gaps = 10/197 (5%)
Query: 1 MESNLWSNRLSTASSRRYH--HQSRSDLFIGGGYDETDGDDDLNAMFLCPFCAEDFDIVG 58
M+S+ WS+RL++A+ RRY SRSD F+G ++E DG+++ F CPFC++ FDIV
Sbjct: 1 MDSDSWSDRLASAT-RRYQLAFPSRSDTFLG--FEEIDGEEEFREEFACPFCSDYFDIVS 57
Query: 59 LCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSL 118
LCCHIDEDHP+EAKNGVCPVCA RVG D+V+HIT+QH N FK+ RKR+ RRGG ST S+
Sbjct: 58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGGSYSTLSI 117
Query: 119 LRKELRDGNLQSLLGG---SSCFVSSSNTEADPLLSSFIFNTPKVDEPLSVQPLSITEPT 175
LR+E DGN QSL GG SSSN ADPLLSSFI +P D + + E
Sbjct: 118 LRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFI--SPIADGFFTTESCISAETG 175
Query: 176 LVKESSNENLHERYVNR 192
VK+++ + L E+ +
Sbjct: 176 PVKKTTIQCLPEQNAKK 192
>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana
GN=DI19-6 PE=1 SV=1
Length = 222
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 136/197 (69%), Gaps = 9/197 (4%)
Query: 1 MESNLWSNRLSTASSRRYHHQ--SRSDLFIGGGYDETDGDDDLNAMFLCPFCAEDFDIVG 58
M+S+ WS+RL++AS RRY SRSD F+G ++E +G+DD + CPFC++ FDIV
Sbjct: 1 MDSDSWSDRLASAS-RRYQLDFLSRSDNFLG--FEEIEGEDDFREEYACPFCSDYFDIVS 57
Query: 59 LCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSL 118
LCCHIDEDHP++AKNGVCP+CA +V +D+++HIT+QH N FK+ RKR+ RRGG S S+
Sbjct: 58 LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQSMLSI 117
Query: 119 LRKELRDGNLQSLLGGS--SCFVSSSNTEADPLLSSFIFNTPKVDEPLSVQPLSITEPTL 176
L++E DGN QSL G+ + SS++ ADPLLSSFI +P D+ + + +
Sbjct: 118 LKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI--SPMADDFFISESSLCADTSS 175
Query: 177 VKESSNENLHERYVNRH 193
K++ N++L ER V +
Sbjct: 176 AKKTLNQSLPERNVEKQ 192
>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1
PE=1 SV=2
Length = 206
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 123/187 (65%), Gaps = 6/187 (3%)
Query: 13 ASSRRYHHQSRSDLFIGGGYDETDGDDDLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAK 72
A S+R+ RS + G++E DGDDD F CPFCAE +DI+GLCCHID++H +E+K
Sbjct: 3 ADSKRFLATLRSRSEMLMGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESK 62
Query: 73 NGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLL 132
N VCPVC+ +VG DIV+HIT+ HG+ FK+QRKR+ R+ G NST SLLRKELR+G+LQ LL
Sbjct: 63 NAVCPVCSLKVGVDIVAHITLHHGSLFKLQRKRKSRKSGTNSTLSLLRKELREGDLQRLL 122
Query: 133 GGSSCFVS-SSNTEADPLLSSFIFNTPKVDEPLSVQPLSITEPTLVKES-----SNENLH 186
G +S S +S+ DPLLSSFI T P Q +++E ++ S +L
Sbjct: 123 GFTSRNGSVASSVTPDPLLSSFISPTRSQSSPAPRQTKNVSEDKQIERKRQVFISPVSLK 182
Query: 187 ERYVNRH 193
+R RH
Sbjct: 183 DREERRH 189
>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp.
japonica GN=DI19-2 PE=2 SV=2
Length = 233
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 107/152 (70%), Gaps = 12/152 (7%)
Query: 21 QSRSDLFIGGGYDETD--GDDDLNA-----MFLCPFCAEDFDIVGLCCHIDEDHPIEAKN 73
Q+R DL++G +D+ D G +++ A + CPFC EDFD V CCH+D++H +EAK+
Sbjct: 25 QARYDLYMG--FDDADAAGVEEVEARGGGEAYNCPFCGEDFDFVAFCCHVDDEHAVEAKS 82
Query: 74 GVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRR--GGPNSTFSLLRKELRDGNLQSL 131
GVCP+CA RVG D++ H+TMQHG++FK+QR+RR+R+ G +S SLLRK+LRDG+LQS
Sbjct: 83 GVCPICATRVGVDLIGHLTMQHGSYFKMQRRRRVRKISSGSHSLLSLLRKDLRDGSLQSF 142
Query: 132 LGGSSCFVSSSNTEADPLLSSFIFNTPKVDEP 163
LGGSS + DP LSS I + P V EP
Sbjct: 143 LGGSSYVSNPPAAAPDPFLSSLICSLP-VAEP 173
>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica
GN=DI19-1 PE=2 SV=1
Length = 226
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 118/193 (61%), Gaps = 23/193 (11%)
Query: 1 MESNLWSNRLSTASSRRYH-----HQSRSDLFIGGGYDETDGDDDLNAMFLCPFCAEDFD 55
M+S W +RL A+++R++ H R+ G +E D D+++ F CP+C ED D
Sbjct: 1 MDSEHWISRL--AAAKRFYAAQLGHADRA------GMEEVDMDEEVRPEFACPYCYEDHD 52
Query: 56 IVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRR-GGPNS 114
+V LC H++E+HP E CP+C+ ++ D+++HIT+QHG FK +RRLRR P S
Sbjct: 53 VVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGS 110
Query: 115 -TFSLLRKELRDGNLQSLLGG----SSCFVSSSNTEADPLLSSFIFNTPKVD-EPLSVQP 168
SLL ++LR+ +LQ LLGG S+ +++N ADPLLSSF + P D E S P
Sbjct: 111 QALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPP 170
Query: 169 LSIT-EPTLVKES 180
+SI + +++KE+
Sbjct: 171 ISIPDDASVIKET 183
>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp.
japonica GN=DI19-3 PE=2 SV=1
Length = 246
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 47 CPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRR 106
CP+C ED DI LC H++EDHP E CP+C +++ D+++HITMQHG FK R+ R
Sbjct: 64 CPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGRRMR 123
Query: 107 LRRGGPNSTFSLLRKELRDGNLQSLLGGS----SCFVSSSNTEADPLLSSFIFNTPKVD- 161
+ SLL ++LRD LQ+LLGG +++N ADPLLSSF +D
Sbjct: 124 RFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGFSTLDS 183
Query: 162 EPLSVQPLSITEPTLVKESSNENLHERYVN 191
E S P+ I + T + + + E ++
Sbjct: 184 EERSKAPVPIPDDTSIHKDTPAQPWESRID 213
>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana
GN=DI19-5 PE=1 SV=2
Length = 214
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 14 SSRRYHHQSRSDLFIGGGYDETDGDDDLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKN 73
SS++Y + + + G E + DD++ + CPFC++D+D+V LC HIDE+H ++A N
Sbjct: 13 SSKKYRLEELAK-YQSGSCIEFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANN 71
Query: 74 GVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLG 133
G+CPVC++RV +V HIT QH + FK RL + S FS ++ LQSL+
Sbjct: 72 GICPVCSRRVKMHMVDHITTQHRDVFK-----RLYKDESYSAFSPGTRKY----LQSLID 122
Query: 134 GSSCFVSSSNTEADPLLSSFIFNTPKVDEPLSVQPLSITEPTL 176
+S + DPLL SFI+N P + VQP S +E ++
Sbjct: 123 EPLSTNHTSKSVLDPLL-SFIYNPPSPKKSKLVQPDSSSEASM 164
>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp.
japonica GN=DI19-4 PE=2 SV=1
Length = 245
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 19/154 (12%)
Query: 1 MESNLWSNRLSTASSRRYHHQSRSDLFIGG----------------GYDETDGDDDLNAM 44
M+S+ W +RL A+ R+Y Q + GYD+ + +D++
Sbjct: 1 MDSDHWISRL-MAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPD 59
Query: 45 FLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRK 104
F CP+C ED DI LC H++++HP E+K CPVC+ R+ D++ HIT+QH F++QR
Sbjct: 60 FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRH 119
Query: 105 RRLRRGG--PNSTFSLLRKELRDGNLQSLLGGSS 136
RLRR N SL ++L++ L+ LLG SS
Sbjct: 120 HRLRRVAVPSNHALSLGGRDLQETYLKVLLGNSS 153
>sp|Q8GWK1|DI192_ARATH Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabidopsis thaliana
GN=DI19-2 PE=1 SV=1
Length = 221
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 53/86 (61%)
Query: 38 DDDLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGN 97
DDD+ + CPFCA D+D+V LC HIDE+H EA NG+CPVC+KRV +V HIT H +
Sbjct: 40 DDDIAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRD 99
Query: 98 FFKIQRKRRLRRGGPNSTFSLLRKEL 123
K ++K R P + L+ L
Sbjct: 100 VLKSEQKEMSYREDPYLSDKYLQPHL 125
>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp.
japonica GN=DI19-5 PE=2 SV=1
Length = 202
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 40 DLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFF 99
+L F CPFC + ++ +C H+ E+H + +N VCP+CA +G D+ +H +QH +
Sbjct: 32 ELWEYFPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLL 91
Query: 100 KIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNTPK 159
K ++ R P T S +G Q ++ + + DPLLS FI + +
Sbjct: 92 KRRKPSRPSSSWP--TPSNNSDPYFEGPPQYMMNNR----TYQDPAPDPLLSQFICSMAQ 145
Query: 160 VD 161
D
Sbjct: 146 TD 147
>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp.
japonica GN=DI19-6 PE=2 SV=1
Length = 208
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 18 YHHQSRSDLFIG------GGYDETDGDDDLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEA 71
YH Q F+ Y E GDD+ CPFC + ++ LC H+ E+H +
Sbjct: 4 YHQQQGGSTFMAIPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDM 63
Query: 72 KNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQS- 130
KN VCP+CA + D H +QH + K RR + + G+ +
Sbjct: 64 KNAVCPICADNLDKDTDEHFRVQHSHLLK-------RRKSSSFSCKPSSAAADKGSYEED 116
Query: 131 --LLGGSSCF-VSSSNTEADPLLSSFIFNT--PKVDEP 163
S C + ++ DPLLS FI + P VD P
Sbjct: 117 SYFEAPSHCMGRPAPDSSPDPLLSQFICCSLAPPVDSP 154
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 22 SRSDLFIGGGYDETDGDDDLNA-------MFLCPFCAE-DFDIVGLCCHIDEDHPIEAKN 73
S+ +I G T D L F CP+C E +FD GL H H + K+
Sbjct: 112 SKYQSYIMEGVKATTKDASLQQRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKS 171
Query: 74 GVCPVCAKRVGTDIVSHITMQHGNFFK-IQRKRRL 107
VCP+CA D + + NF + IQR+ R
Sbjct: 172 VVCPICASMPWGD----PSYRSANFMEHIQRRHRF 202
>sp|Q9ET26|RN114_MOUSE RING finger protein 114 OS=Mus musculus GN=Rnf114 PE=2 SV=2
Length = 229
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 22 SRSDLFIGGGYDETDGDDDLNA-------MFLCPFCAE-DFDIVGLCCHIDEDHPIEAKN 73
S+ +I G T D L F CP+C E +FD GL H H + K+
Sbjct: 112 SKYQNYIMEGVKATTKDASLQPRNIPNRYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKS 171
Query: 74 GVCPVCAKRVGTDIVSHITMQHGNFFK-IQRKRRL 107
VCP+CA D + + NF + IQR+ R
Sbjct: 172 VVCPICASMPWGD----PSYRSANFMEHIQRRHRF 202
>sp|Q3K8K8|PLSX_PSEPF Phosphate acyltransferase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=plsX PE=3 SV=2
Length = 336
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 109 RGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNT-PKVDEPLSVQ 167
RG P+S+ + + LRDG +Q +C VS+ NT A LS F+ T P +D P V
Sbjct: 80 RGKPDSSMRVALELLRDGKVQ------AC-VSAGNTGALMALSRFVLKTLPGIDRPAMVA 132
Query: 168 PL 169
+
Sbjct: 133 AI 134
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 25 DLFIGGGYDETDGDDDLNAMFLCPFCAE-DFDIVGLCCHIDEDHPIEAKNGVCPVCAK-- 81
DL+ GG + F CP+C + + L H+ +H + +CP+CA
Sbjct: 62 DLYYGGEAFSVEQPQS----FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALP 117
Query: 82 -----RVGTDIVSHITMQH 95
V D +H+T++H
Sbjct: 118 GGDPNHVTDDFAAHLTLEH 136
>sp|Q6J1I8|RN114_PIG RING finger protein 114 OS=Sus scrofa GN=RNF114 PE=2 SV=1
Length = 228
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 9 RLSTASSRRYHHQSRSDLFIGGGYDETDGDDDLNA-------MFLCPFCAE-DFDIVGLC 60
R A+ +Y + +I G T D L F CP+C E +FD GL
Sbjct: 104 RAHVATCSKYQN------YIMEGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLV 157
Query: 61 CHIDEDHPIEAKNGVCPVCAKRVGTD-------IVSHITMQH 95
H H + K+ VCP+CA D + HI +H
Sbjct: 158 EHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRH 199
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 45 FLCPFCAE-DFDIVGLCCHIDEDHPIEAKNGVCPVCAK-------RVGTDIVSHITMQH 95
F CP+C + + L H+ +H + +CP+CA V D +H+T++H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 45 FLCPFCAE-DFDIVGLCCHIDEDHPIEAKNGVCPVCAK-------RVGTDIVSHITMQH 95
F CP+C + + L H+ +H + +CP+CA V D +H+T++H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 45 FLCPFCAE-DFDIVGLCCHIDEDHPIEAKNGVCPVCAK-------RVGTDIVSHITMQH 95
F CP+C + + L H+ +H + +CP+CA V D +H+T++H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 25 DLFIGGGYDETDGDDDLNAMFLCPFCAE-DFDIVGLCCHIDEDHPIEAKNGVCPVCAK-- 81
DL+ GG + F CP+C + + L H+ +H + +CP+CA
Sbjct: 62 DLYYGGEAFSVEQPQS----FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALP 117
Query: 82 -----RVGTDIVSHITMQH 95
V D +H+T++H
Sbjct: 118 GGDPNHVTDDFAAHLTLEH 136
>sp|Q4U5R4|RN114_BOVIN RING finger protein 114 OS=Bos taurus GN=RNF114 PE=2 SV=1
Length = 230
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 45 FLCPFCAE-DFDIVGLCCHIDEDHPIEAKNGVCPVCA 80
F CP+C E +FD GL H H + K+ VCP+CA
Sbjct: 143 FPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICA 179
>sp|B0KF53|PLSX_PSEPG Phosphate acyltransferase OS=Pseudomonas putida (strain GB-1)
GN=plsX PE=3 SV=1
Length = 336
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 102 QRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNT-PKV 160
+R + RG P+S+ + + +RDG Q +C VS+ NT A LS F+ T P +
Sbjct: 73 ERPSQALRGKPDSSMRIALELVRDGKAQ------AC-VSAGNTGALMALSRFVLKTLPGI 125
Query: 161 DEPLSVQPL 169
D P V +
Sbjct: 126 DRPAMVAAI 134
>sp|A5W716|PLSX_PSEP1 Phosphate acyltransferase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=plsX PE=3 SV=2
Length = 336
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 102 QRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNT-PKV 160
+R + RG P+S+ + + +RDG Q +C VS+ NT A LS F+ T P +
Sbjct: 73 ERPSQALRGKPDSSMRIALELVRDGKAQ------AC-VSAGNTGALMALSRFVLKTLPGI 125
Query: 161 DEPLSVQPL 169
D P V +
Sbjct: 126 DRPAMVAAI 134
>sp|Q88LL8|PLSX_PSEPK Phosphate acyltransferase OS=Pseudomonas putida (strain KT2440)
GN=plsX PE=3 SV=1
Length = 336
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 102 QRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNT-PKV 160
+R + RG P+S+ + + +RDG Q +C VS+ NT A LS F+ T P +
Sbjct: 73 ERPSQALRGKPDSSMRIALELVRDGKAQ------AC-VSAGNTGALMALSRFVLKTLPGI 125
Query: 161 DEPLSVQPL 169
D P V +
Sbjct: 126 DRPAMVAAI 134
>sp|C3K0N6|PLSX_PSEFS Phosphate acyltransferase OS=Pseudomonas fluorescens (strain SBW25)
GN=plsX PE=3 SV=1
Length = 336
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 109 RGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNT-PKVDEPLSVQ 167
RG P+S+ + + LRDG +Q +C VS+ NT A LS ++ T P +D P V
Sbjct: 80 RGKPDSSMRVALELLRDGKVQ------AC-VSAGNTGALMALSRYVLKTLPGIDRPAMVA 132
Query: 168 PL 169
+
Sbjct: 133 AI 134
>sp|Q9Y508|RN114_HUMAN RING finger protein 114 OS=Homo sapiens GN=RNF114 PE=1 SV=1
Length = 228
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 22 SRSDLFIGGGYDETDGDDDLNA-------MFLCPFCAE-DFDIVGLCCHIDEDHPIEAKN 73
S+ +I G T D L F CP+C E +FD GL H H + K+
Sbjct: 111 SKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKS 170
Query: 74 GVCPVCAKRVGTDIVSHITMQHGNFFK-IQRKRRL 107
VCP+CA D + NF + IQR+ R
Sbjct: 171 VVCPICASMPWGD----PNYRSANFREHIQRRHRF 201
>sp|Q6J212|RN114_PANTR RING finger protein 114 OS=Pan troglodytes GN=RNF114 PE=2 SV=1
Length = 228
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 22 SRSDLFIGGGYDETDGDDDLNA-------MFLCPFCAE-DFDIVGLCCHIDEDHPIEAKN 73
S+ +I G T D L F CP+C E +FD GL H H + K+
Sbjct: 111 SKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKS 170
Query: 74 GVCPVCAKRVGTDIVSHITMQHGNFFK-IQRKRRL 107
VCP+CA D + NF + IQR+ R
Sbjct: 171 VVCPICASMPWGD----PNYRSANFREHIQRRHRF 201
>sp|P43748|HOLB_HAEIN DNA polymerase III subunit delta' OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=holB PE=3 SV=2
Length = 327
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 21/159 (13%)
Query: 61 CHIDEDHPIEAKNGVCPVCAKRVGTD-------IVSHITMQHGN-FFKIQRKRRLRRGGP 112
CH+ + H + + P+ K +G D +V+ Q+GN +Q RL
Sbjct: 65 CHLMQAHSHPDYHELSPINGKDIGVDQVRDINEMVAQHAQQNGNKVVYVQGAERLTEAAA 124
Query: 113 NSTFSLLRKE-------LRDGNLQSLLGG--SSCFVSSSNTEADPLLSSFIFNTPKVD-- 161
N+ L + L+ + SLL S C V + + + + ++ + V+
Sbjct: 125 NALLKTLEEPRPNTYFLLQADSSASLLATIYSRCQVWNLSVPNEEIAFEWLKSKSAVENQ 184
Query: 162 EPLSVQPLSITEPTLVKESSNENLHERYVN--RHFYLFY 198
E L+ +++ P L E+ E E+ N R F++FY
Sbjct: 185 EILTALAMNLGRPLLALETLQEGFIEQRKNFLRQFWVFY 223
>sp|Q11107|LIN13_CAEEL Zinc finger protein lin-13 OS=Caenorhabditis elegans GN=lin-13 PE=2
SV=2
Length = 2248
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 38 DDDLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGT--DIVSHITMQH 95
D +++ +C C FD H +DHP + N CP CA T D+ H+ +H
Sbjct: 1133 DKNIDPRLMCYMCELTFDSYDELTHHMDDHPEKWAN--CPFCAANTPTHFDLQKHLIQEH 1190
>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 GN=1a PE=3 SV=1
Length = 4248
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 132 LGGSSCFVSSSNT--EADPLLSSFIFNTPKVDEPLSVQPLSITEPT 175
+G FV+ NT + PLLS+ + NTP + L+V PL + T
Sbjct: 1843 MGKPVLFVTRPNTWKKLVPLLSTVVVNTPNTYDVLAVDPLPVNNET 1888
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 GN=rep PE=3 SV=1
Length = 6930
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 132 LGGSSCFVSSSNT--EADPLLSSFIFNTPKVDEPLSVQPLSITEPT 175
+G FV+ NT + PLLS+ + NTP + L+V PL + T
Sbjct: 1843 MGKPVLFVTRPNTWKKLVPLLSTVVVNTPNTYDVLAVDPLPVNNET 1888
>sp|P27472|GYS2_YEAST Glycogen [starch] synthase isoform 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GSY2 PE=1 SV=3
Length = 705
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 103 RKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVS 140
R+ LRRG P+ L+ +EL D N+ +L GG V+
Sbjct: 610 RQLALRRGYPDQFRELVGEELNDSNMDALAGGKKLKVA 647
>sp|C4Z8P1|ACCDA_EUBR3 Acetyl-coenzyme A carboxylase carboxyl transferase subunits
beta/alpha OS=Eubacterium rectale (strain ATCC 33656 /
VPI 0990) GN=accD PE=3 SV=1
Length = 589
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 50 CAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVS---HITMQHGNFFKIQRKRR 106
A D G+ ED P + VCP C K V +V ++ + +F+++ K R
Sbjct: 27 TAADGKNAGVAQETKEDAP---ETIVCPKCGKTVLKSVVKQHKYVCYECNYYFRVRAKNR 83
Query: 107 LRRGGPNSTFSLLRKELRDGN 127
+R F EL GN
Sbjct: 84 IRMVSDKEAFEPWFTELTTGN 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,834,604
Number of Sequences: 539616
Number of extensions: 3330811
Number of successful extensions: 7003
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 6973
Number of HSP's gapped (non-prelim): 50
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)