BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028990
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZPY1|PPOX2_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 OS=Arabidopsis
thaliana GN=PPOX2 PE=1 SV=2
Length = 198
Score = 261 bits (666), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/199 (61%), Positives = 157/199 (78%), Gaps = 2/199 (1%)
Query: 1 MGTPVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQIN 60
MGT V APWKQLL A+E+ SHL HS Y QLAT+G NGRPSNRTVVFRGF++N+D+IQIN
Sbjct: 1 MGTHV-APWKQLLFGAIEANSHLSHSSYVQLATIGLNGRPSNRTVVFRGFEENSDRIQIN 59
Query: 61 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 120
+D RSRKIEELK CPFSE+CWYF+++W+QFRINGR++VID SN D KLQ REK+WF S
Sbjct: 60 TDLRSRKIEELKHCPFSEMCWYFSDTWEQFRINGRIEVIDASNPDQTKLQQREKAWFANS 119
Query: 121 MKARLQYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 179
+++RL Y+ P G P +EQ ++ LDP +GPV +C+L+L+P++VDYLNLK+NQ+L F
Sbjct: 120 LRSRLIYVCPTPGSPCNSEQSSQQVKLDPSSGPVPEYCLLLLEPEKVDYLNLKTNQRLFF 179
Query: 180 MSRLSDNGEKYWASLKTSP 198
S + GEK W S K +P
Sbjct: 180 SSMATGTGEKCWTSEKVNP 198
>sp|P53210|YG1B_YEAST Uncharacterized protein YGR017W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR017W PE=1 SV=1
Length = 297
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 7 APWKQLLLQALESQSHLKHSIYFQLATVGT-NGRPSNRTVVFRGF---QDNTDKIQINSD 62
APW + +Q+ ++ + + + FQ ATV +P RTVVFR F T+ + N+D
Sbjct: 6 APWIPMFIQSCKNNT--EPFVSFQFATVDELTNKPRCRTVVFRDFLFHDKRTNVLTFNTD 63
Query: 63 TRSRKIEEL------------KSC--PFSEICWYFTESWDQFRINGRVDVI 99
RS KI E K C PF E C+YF E+W+Q+R +G+ I
Sbjct: 64 MRSSKITESFITPNSNNSSDSKRCETPFFEACFYFPETWEQYRFSGQCFTI 114
>sp|Q1DCS1|PDXH_MYXXD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Myxococcus xanthus
(strain DK 1622) GN=pdxH PE=3 SV=2
Length = 206
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
+ATVG +GRPS R V+ + F N + SRK E ++ P++ +C+Y+ +Q
Sbjct: 43 VATVGDDGRPSARVVLLKDFDARGFVFYTNHE--SRKGREARAHPYAALCFYWQPLNEQV 100
Query: 91 RINGRVDVIDGSNSD 105
R+ GRV+ + + +D
Sbjct: 101 RVEGRVERVTDAEAD 115
>sp|P21159|PDXH_MYXXA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Myxococcus xanthus
GN=pdxH PE=1 SV=2
Length = 220
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
+ATVG +GRPS R V+ + F N + SRK E ++ P++ +C+Y+ +Q
Sbjct: 57 VATVGDDGRPSARVVLLKDFDARGFVFYTNHE--SRKGREARAHPYAALCFYWQPLNEQV 114
Query: 91 RINGRVDVIDGSNSD 105
R+ GRV+ + + +D
Sbjct: 115 RVEGRVERVTDAEAD 129
>sp|A2SJZ5|PDXH_METPP Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Methylibium
petroleiphilum (strain PM1) GN=pdxH PE=3 SV=2
Length = 213
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 10 KQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIE 69
+Q L QAL+++ L LATVG +GRPS R V+ +G + I ++ SRK
Sbjct: 31 EQWLDQALKAK--LPEPNAMTLATVGADGRPSTRVVLIKGC--DARGIVWYTNYESRKGR 86
Query: 70 ELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
EL + PF+ + +++ + RI GRV+ + + SD
Sbjct: 87 ELAAHPFAALQFHWVDLERVVRIEGRVEKVSDTESD 122
>sp|Q0BCF1|PDXH_BURCM Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=pdxH PE=3 SV=1
Length = 214
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG NGRPS R V+ +G + N + SRK +L + P++ + +Y+ E Q
Sbjct: 49 LATVGENGRPSARIVLIKGVDERGFVFFTNYE--SRKGRDLAAHPYAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSTDESD 121
>sp|B1YVG1|PDXH_BURA4 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
ambifaria (strain MC40-6) GN=pdxH PE=3 SV=1
Length = 214
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG NGRPS R V+ +G + N + SRK +L + P++ + +Y+ E Q
Sbjct: 49 LATVGENGRPSARIVLIKGVDERGFVFFTNYE--SRKGRDLAAHPYAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSTDESD 121
>sp|A9AGI1|PDXH_BURM1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=pdxH PE=3 SV=1
Length = 214
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +GRPS R V+ +G + N + SRK +L + P++ + +Y+ E Q
Sbjct: 49 LATVGADGRPSARIVLVKGVDERGFVFFTNYE--SRKGRDLAAHPYAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GRV+ SD
Sbjct: 107 RIEGRVEKTSAEESD 121
>sp|B1XYE2|PDXH_LEPCP Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=pdxH
PE=3 SV=1
Length = 211
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
+ATV +GRPS R V+ +G+ ++ I ++ +SRK +EL PF+ + +++
Sbjct: 49 VATVSADGRPSTRVVLIKGY--DSRGIVWYTNYKSRKGQELAGNPFAALQFHWVTQERVV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GRV+ SD
Sbjct: 107 RIEGRVEKTSAEESD 121
>sp|Q39DH2|PDXH_BURS3 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia sp.
(strain 383) GN=pdxH PE=3 SV=1
Length = 214
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +GRPS R V+ +G + N + SRK +L + P + + +Y+ E Q
Sbjct: 49 LATVGDDGRPSARIVLIKGVDERGFVFFTNYE--SRKGRDLAAHPQAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSAEESD 121
>sp|A0K9Z1|PDXH_BURCH Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
cenocepacia (strain HI2424) GN=pdxH PE=3 SV=1
Length = 214
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +GRPS R V+ +G + N + SRK +L P + + +Y+ E Q
Sbjct: 49 LATVGADGRPSARIVLIKGVDERGFVFFTNYE--SRKGHDLAVHPQAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSAEESD 121
>sp|Q1BU45|PDXH_BURCA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
cenocepacia (strain AU 1054) GN=pdxH PE=3 SV=1
Length = 214
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +GRPS R V+ +G + N + SRK +L P + + +Y+ E Q
Sbjct: 49 LATVGADGRPSARIVLIKGVDERGFVFFTNYE--SRKGHDLAVHPQAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSAEESD 121
>sp|B1JXH8|PDXH_BURCC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
cenocepacia (strain MC0-3) GN=pdxH PE=3 SV=1
Length = 214
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +GRPS R V+ +G + N + SRK +L P + + +Y+ E Q
Sbjct: 49 LATVGADGRPSARIVLIKGVDERGFVFFTNYE--SRKGHDLAVHPQAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSAEESD 121
>sp|B4E9I1|PDXH_BURCJ Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
cepacia (strain J2315 / LMG 16656) GN=pdxH PE=3 SV=1
Length = 214
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +GRPS R V+ +G + N + SRK +L P + + +Y+ E Q
Sbjct: 49 LATVGADGRPSARIVLIKGVDERGFVFFTNYE--SRKGHDLAVHPQAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSAEESD 121
>sp|A1TQY3|PDXH_ACIAC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acidovorax citrulli
(strain AAC00-1) GN=pdxH PE=3 SV=1
Length = 225
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG + RPS R V+ +G+ + I ++ SRK +L PF+ + +++ E
Sbjct: 62 LATVGADLRPSTRVVLIKGYDERG--IVWYTNYGSRKGRQLAGNPFAALQFHWVELERVV 119
Query: 91 RINGRVDVIDGSNSD 105
RI GRV+ + + SD
Sbjct: 120 RIEGRVEKVSDAESD 134
>sp|Q7P203|PDXH_CHRVO Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=pdxH PE=3 SV=1
Length = 213
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 29 FQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWD 88
LA +G +GRPS+R V+ +G +D ++ ++ +SRK + L++ P+ + +++ E
Sbjct: 48 MNLAAIGADGRPSSRIVLLKGVEDG--QLLFYTNYQSRKGQALEANPYVALNFFWPELER 105
Query: 89 QFRINGRVDVIDGSNSD 105
Q RI G+ + SD
Sbjct: 106 QVRIEGKAARVAPEVSD 122
>sp|Q65QT9|PDXH_MANSM Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=pdxH PE=3 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 8 PWKQL---LLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTR 64
P KQL L +A+ Q+ + +ATVG NG+PS+R V+ + + N + ++
Sbjct: 25 PLKQLEKWLNEAI--QAKVNEPTAMNVATVGENGKPSSRVVLLK--EVNERGLVFFTNYH 80
Query: 65 SRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
S K +L PF+ + ++ E Q R+ GRV+ I SD
Sbjct: 81 SHKGRDLAVNPFAAVNLFWAELQRQVRVEGRVERISPQASD 121
>sp|A4G883|PDXH_HERAR Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Herminiimonas
arsenicoxydans GN=pdxH PE=3 SV=1
Length = 211
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
++TVG NGRPS+R V+ + F N D SRK EL+ P++ + +++ +
Sbjct: 48 VSTVGENGRPSSRIVLIKDFDQRGFTWFTNYD--SRKGRELEKNPYAALLFHWIALEREV 105
Query: 91 RINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCP 135
RI GRV+ + S+ + Q R +K+RL + Q P
Sbjct: 106 RIEGRVERVSAEESE-QYFQSR-------PVKSRLSAIASAQSAP 142
>sp|B2SY78|PDXH_BURPP Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=pdxH PE=3 SV=1
Length = 213
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATV + GRPS R V+ +G + N + SRK EL + P++ + +Y+ E Q
Sbjct: 49 LATVDSRGRPSARIVLIKGVDERGFVFFTNYE--SRKGRELAANPYASLLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
R+ GR+ SD
Sbjct: 107 RVEGRIVKTSAEESD 121
>sp|Q8DLZ5|PDXH_THEEB Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Thermosynechococcus
elongatus (strain BP-1) GN=pdxH PE=3 SV=1
Length = 211
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +G P+ R V+ + D ++ RSRK EL + P + + +++ E Q
Sbjct: 49 LATVGLDGMPAARLVLLKEVDDRG--FVFFTNYRSRKGRELAAHPKAALVFWWAELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI G V+ I + SD
Sbjct: 107 RIEGNVEQISAAESD 121
>sp|Q13UP6|PDXH_BURXL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
xenovorans (strain LB400) GN=pdxH PE=3 SV=1
Length = 213
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
QA+++Q L LATV GRPS R V+ +G + N + SRK EL +
Sbjct: 35 QAVDAQ--LPEPNTMTLATVDPRGRPSARIVLIKGVDERGFVFFTNYE--SRKGRELAAN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P++ + +Y+ E Q R+ GR+ SD
Sbjct: 91 PYASLLFYWIELERQVRVEGRIVKTSAEESD 121
>sp|A1WXY4|PDXH_HALHL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=pdxH PE=3 SV=1
Length = 201
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +G P+ RTV+ + + N SRK ++L P + +C +F ++Q
Sbjct: 39 LATVGRDGWPAARTVLLKQLDEQGAVFYTNRA--SRKGQQLADNPRAALCLHFQPLYEQV 96
Query: 91 RINGRVDVIDGSNSD 105
I G V + S +D
Sbjct: 97 EIRGVVAAVSASEAD 111
>sp|C1D0Z0|PDXH_DEIDV Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=pdxH PE=3
SV=1
Length = 214
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 20 QSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEI 79
+S L+ LAT GRPS RTV+ RG QD + ++ S K +L P +E+
Sbjct: 38 RSGLREPYAMSLATADREGRPSVRTVLLRGIQDG--GLTFFTNYESHKGHDLTDNPQAEV 95
Query: 80 CWYFTESWDQFRINGRVDVIDGSNS 104
+++ E Q R G V+ + +S
Sbjct: 96 LFFWAEHERQVRAYGPVERLSSEDS 120
>sp|Q1LK07|PDXH_RALME Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pdxH PE=3 SV=1
Length = 212
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 20 QSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEI 79
Q+ L LATVG +G+PS R V+ +G + D ++ SRK +L + P + +
Sbjct: 38 QAKLPEPNAMTLATVGADGQPSARIVLLKGM--DADGFTFFTNYESRKGVDLLANPRAAL 95
Query: 80 CWYFTESWDQFRINGRVDVIDGSNSD 105
+++ + Q R+ G V+ ++ + SD
Sbjct: 96 LFHWVQLERQIRVEGIVEKVEDAESD 121
>sp|Q5ZY37|PDXH_LEGPH Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=pdxH PE=3 SV=1
Length = 215
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
L+TV G P +R V+ +G ++ ++ +S K +++ P++ + +Y+ + Q
Sbjct: 52 LSTVDEKGYPDSRVVLLKGLENGN--FIFYTNYQSAKAMQIQKNPYAALNFYWPQMARQV 109
Query: 91 RINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ-YLDPEQGCPSVNEQPKEFSLDPC 149
R+ GRV I SD KS F + + Q LD ++N+ +E+ P
Sbjct: 110 RVRGRVKKISSEQSDAYFSSRPLKSQFSAIVSPQSQEILDRISLEDALNQLIEEYGQKPV 169
Query: 150 AGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKY-----WASLKTSP 198
P + +I+ PD++++ + N RL D Y W + +P
Sbjct: 170 VRPENWGGYMII-PDEIEFWQGRDN-------RLHDRIHYYRHGHEWTHRRLAP 215
>sp|A5IH19|PDXH_LEGPC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Corby) GN=pdxH PE=3 SV=1
Length = 215
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
L+TV G P +R V+ +G ++ ++ +S K +++ P++ + +Y+ + Q
Sbjct: 52 LSTVDEKGYPDSRVVLLKGLENGN--FIFYTNYQSAKAMQIQKNPYAALNFYWPQMARQV 109
Query: 91 RINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ-YLDPEQGCPSVNEQPKEFSLDPC 149
R+ GRV I SD KS F + + Q LD ++N+ +E+ P
Sbjct: 110 RVRGRVKKISSEQSDAYFSSRPLKSQFSAIVSPQSQEILDRISLEDALNQLIEEYGQKPV 169
Query: 150 AGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKY-----WASLKTSP 198
P + +I+ PD++++ + N RL D Y W + +P
Sbjct: 170 VRPENWGGYMII-PDEIEFWQGRDN-------RLHDRIHYYRHGHEWTHRRLAP 215
>sp|Q5X7K4|PDXH_LEGPA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Paris) GN=pdxH PE=3 SV=1
Length = 215
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
L+TV G P +R V+ +G ++ ++ +S K +++ P++ + +Y+ + Q
Sbjct: 52 LSTVDEKGYPDSRVVLLKGLENGN--FIFYTNYQSAKAMQIQKNPYAALNFYWPQMARQV 109
Query: 91 RINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ-YLDPEQGCPSVNEQPKEFSLDPC 149
R+ GRV I SD KS F + + Q LD ++N+ +E+ P
Sbjct: 110 RVRGRVKKISSEQSDAYFSSRPLKSQFSAIVSPQSQEILDRISLEDALNQLIEEYGQKPV 169
Query: 150 AGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKY-----WASLKTSP 198
P + +I+ PD++++ + N RL D Y W + +P
Sbjct: 170 VRPENWGGYMII-PDEIEFWQGRDN-------RLHDRIHYYRHGHEWTHRRLAP 215
>sp|Q5WZ02|PDXH_LEGPL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Lens) GN=pdxH PE=3 SV=1
Length = 215
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
L+TV G P +R V+ +G ++ ++ +S K +++ P++ + +Y+ + Q
Sbjct: 52 LSTVDEKGYPDSRVVLLKGLENGN--FIFYTNYQSAKAMQIQKNPYAALNFYWPQMARQV 109
Query: 91 RINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ-YLDPEQGCPSVNEQPKEFSLDPC 149
R+ GRV I SD KS F + + Q LD ++N+ +E+ P
Sbjct: 110 RVRGRVKKISSEQSDAYFSSRPIKSQFSAIVSPQSQEILDRISLEDALNQLIEEYGQKPV 169
Query: 150 AGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKY-----WASLKTSP 198
P + +I+ PD++++ + N RL D Y W + +P
Sbjct: 170 VRPENWGGYMII-PDEIEFWQGRDN-------RLHDRIHYYRHGHEWTHRRLAP 215
>sp|Q9RX20|PDXH_DEIRA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=pdxH PE=3 SV=1
Length = 214
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 20 QSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEI 79
Q+ L QLAT GRPS RTV+ RG + N + S K +L + P +E+
Sbjct: 38 QADLTEPYALQLATADAQGRPSVRTVLLRGADERGLTFYTNYE--SHKGHDLAANPQAEV 95
Query: 80 CWYFTESWDQFRINGRVDVIDGSNSD 105
+Y+ E Q R G V + + S+
Sbjct: 96 LFYWAELERQVRAFGTVSRVPEAESN 121
>sp|Q5E9K3|PNPO_BOVIN Pyridoxine-5'-phosphate oxidase OS=Bos taurus GN=PNPO PE=2 SV=1
Length = 261
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LAT +G+PS R V+ +GF D + ++ SRK +EL S PF+ + +Y+ Q
Sbjct: 83 LATCTRDGKPSARMVLLKGF--GKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLHRQV 140
Query: 91 RINGRV 96
R+ G V
Sbjct: 141 RVEGPV 146
>sp|A6VKX9|PDXH_ACTSZ Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=pdxH PE=3
SV=1
Length = 210
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
+ATVG NG+P++R V+ + + N ++ SRK + L + PF+ + +++ E Q
Sbjct: 48 IATVGENGKPTSRVVLLK--EVNAQGFVFFTNYLSRKGKSLAANPFAALNFFWPELERQV 105
Query: 91 RINGRVDVIDGSNSD 105
R+ G V +D SD
Sbjct: 106 RVEGHVVKLDEIKSD 120
>sp|A1VRL0|PDXH_POLNA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Polaromonas
naphthalenivorans (strain CJ2) GN=pdxH PE=3 SV=1
Length = 215
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATV +N RPS R V+ +GF + I ++ SRK EL P++ + +++ E
Sbjct: 52 LATVASNLRPSTRVVLIKGF--DAQGIVWYTNYASRKGLELAGNPYAALQFHWVELERVV 109
Query: 91 RINGRVDVIDGSNSD 105
RI G V+ + SD
Sbjct: 110 RIEGVVEKVSDEESD 124
>sp|Q21WR9|PDXH_RHOFD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=pdxH PE=3 SV=2
Length = 220
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
+ATV +N RPS R V+ +G+ + N D SRK +EL P++ + +++ E
Sbjct: 49 VATVASNLRPSTRVVLIKGYDERGITWFTNYD--SRKGQELAGNPYAALQFHWVELERVV 106
Query: 91 RINGRVDVIDGSNSD 105
RI G V+ + SD
Sbjct: 107 RIEGIVEKVSEEESD 121
>sp|O94322|YGK3_SCHPO Uncharacterized protein C725.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC725.03 PE=4 SV=1
Length = 257
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 9 WKQLLLQALESQ---SHLKHSIYFQLATVGTNGR--PSNRTVVFRGFQDN---------- 53
WK LL+ L+ S + H YFQLAT+ T P NRTV RGF
Sbjct: 5 WKNELLKLLKENVDSSGVIHPEYFQLATLPTGNEIYPRNRTVAIRGFVGTGWHKPRPDDV 64
Query: 54 --TDKIQINSDTRSRKIEELK--------SCPFS---EICWYFTESWDQFRINGRV 96
TD + ++D S K E+ S P E+C + ++ Q RI+G++
Sbjct: 65 LATDLLVFSTDIASHKAAEIAEQQKNTFPSGPIPNAFEMCGWLPKTMQQIRISGQI 120
>sp|B1J1C4|PDXH_PSEPW Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida
(strain W619) GN=pdxH PE=3 SV=1
Length = 215
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATV +GRP R ++ +G D N D S K ++L++ P++ + +++ Q
Sbjct: 52 LATVDGDGRPHCRVLLLKGLDDRGFTFFTNYD--SAKGQQLQANPYAAMTFFWPALERQV 109
Query: 91 RINGRVDVIDGSNSDPEKLQIR 112
RI GRV+ + SD + Q+R
Sbjct: 110 RIEGRVEKVTPQESD-DYYQVR 130
>sp|A4JHA1|PDXH_BURVG Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=pdxH PE=3 SV=1
Length = 214
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
+ATVG +GRPS R ++ + + N + SRK +L + P + + +Y+ E Q
Sbjct: 49 VATVGADGRPSARILLIKAVDERGFVFFTNYE--SRKGHDLAANPHAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTSTDESD 121
>sp|A9I847|PDXH_BORPD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pdxH
PE=3 SV=1
Length = 210
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 11 QLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEE 70
Q QAL +Q +++ LATV +G+PS R V+ +G+ ++ ++ SRK +
Sbjct: 30 QWFDQALAAQVPEPNAM--TLATVDADGQPSARIVLIKGY--DSRGFAFYTNYESRKGHD 85
Query: 71 LKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
L + P + + +++ Q RI GRV+ + SD
Sbjct: 86 LLANPRAALLFFWQPLERQVRIEGRVEQVSAEESD 120
>sp|A5VZL6|PDXH_PSEP1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=pdxH PE=3 SV=1
Length = 215
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATV GRP R ++ +G + N D S K ++L++ PF+ + +++ Q
Sbjct: 52 LATVDGEGRPHCRVLLLKGLDEQGFTFFTNYD--SAKGQQLQANPFAAMTFFWPALERQV 109
Query: 91 RINGRVDVIDGSNSD 105
RI GRV + SD
Sbjct: 110 RIEGRVQKVTAQESD 124
>sp|Q63WN7|PDXH_BURPS Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
pseudomallei (strain K96243) GN=pdxH PE=3 SV=2
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|A3N6I1|PDXH_BURP6 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
pseudomallei (strain 668) GN=pdxH PE=3 SV=1
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|Q3JVD0|PDXH_BURP1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
pseudomallei (strain 1710b) GN=pdxH PE=3 SV=2
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|A3NS64|PDXH_BURP0 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
pseudomallei (strain 1106a) GN=pdxH PE=3 SV=1
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|Q88NS5|PDXH_PSEPK Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida
(strain KT2440) GN=pdxH PE=3 SV=1
Length = 215
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATV GRP R ++ +G + N D S K ++L++ PF+ + +++ Q
Sbjct: 52 LATVDGEGRPHCRVLLLKGLDEQGFTFFTNYD--SAKGQQLQANPFAAMTFFWPALERQV 109
Query: 91 RINGRVDVIDGSNSD 105
RI GRV + SD
Sbjct: 110 RIEGRVQKVTAQESD 124
>sp|A1V1A2|PDXH_BURMS Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia mallei
(strain SAVP1) GN=pdxH PE=3 SV=1
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|Q62M91|PDXH_BURMA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia mallei
(strain ATCC 23344) GN=pdxH PE=3 SV=1
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|A2S933|PDXH_BURM9 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia mallei
(strain NCTC 10229) GN=pdxH PE=3 SV=1
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|A3MHF0|PDXH_BURM7 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia mallei
(strain NCTC 10247) GN=pdxH PE=3 SV=1
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 15 QALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSC 74
+AL++Q L LATV +GRPS R V+ +G + N + SRK EL
Sbjct: 35 EALDAQ--LPEPNTMTLATVDESGRPSARIVLIKGADERGFVFFTNYE--SRKGRELAHN 90
Query: 75 PFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
P + + +Y+ E Q R+ GR++ SD
Sbjct: 91 PNAALLFYWIELERQVRVEGRIEKTSEEESD 121
>sp|Q2T0M6|PDXH_BURTA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=pdxH PE=3 SV=2
Length = 214
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATV GRPS R V+ +G + N + SRK EL P + + +Y+ E Q
Sbjct: 49 LATVDEAGRPSARIVLIKGVDERGFVFFTNYE--SRKGRELAHNPNAALLFYWIELERQV 106
Query: 91 RINGRVDVIDGSNSD 105
RI GR++ SD
Sbjct: 107 RIEGRIEKTTEEESD 121
>sp|A4VJR0|PDXH_PSEU5 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas
stutzeri (strain A1501) GN=pdxH PE=3 SV=1
Length = 215
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 9 WKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKI 68
++Q +A +++ LATV +GRP R ++ + D N D S K
Sbjct: 30 FRQWFTEATQTEQAPVEPNAMSLATVDADGRPHCRILLLKALDDRGFTFFTNYD--SAKG 87
Query: 69 EELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 105
++L + P++ + +++ Q RI GRV+ + SD
Sbjct: 88 QQLDASPYAAMTFFWPTLERQVRIEGRVEKVTAEESD 124
>sp|Q474I9|PDXH_CUPPJ Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pdxH PE=3
SV=1
Length = 212
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 31 LATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQF 90
LATVG +G+PS R V+ +G + N + SRK ++ + P + + +++ + Q
Sbjct: 49 LATVGADGQPSARIVLLKGMDEKGFTFFTNYE--SRKGLDMAANPRAALLFHWVQLERQV 106
Query: 91 RINGRVDVIDGSNSD 105
R+ GRV+ + SD
Sbjct: 107 RVEGRVEKVADDESD 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,023,896
Number of Sequences: 539616
Number of extensions: 3228660
Number of successful extensions: 6553
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 6454
Number of HSP's gapped (non-prelim): 199
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)