Query 028990
Match_columns 200
No_of_seqs 155 out of 1339
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0259 PdxH Pyridoxamine-phos 100.0 2.7E-40 5.9E-45 260.6 13.6 172 6-198 28-214 (214)
2 PRK05679 pyridoxamine 5'-phosp 100.0 2.6E-38 5.6E-43 254.7 17.6 177 5-198 8-195 (195)
3 TIGR00558 pdxH pyridoxamine-ph 100.0 4.1E-37 8.8E-42 251.2 17.5 175 7-198 32-217 (217)
4 PLN03049 pyridoxine (pyridoxam 100.0 3.8E-36 8.2E-41 269.0 18.1 182 4-198 269-462 (462)
5 PLN02918 pyridoxine (pyridoxam 100.0 5.5E-36 1.2E-40 270.0 16.3 182 4-198 351-544 (544)
6 KOG2586 Pyridoxamine-phosphate 100.0 2.6E-34 5.6E-39 225.8 10.0 181 3-198 34-228 (228)
7 COG5135 Uncharacterized conser 99.9 2.1E-27 4.5E-32 186.2 10.6 188 6-198 3-245 (245)
8 PF12766 Pyridox_oxase_2: Pyri 99.9 2.4E-25 5.2E-30 160.8 12.1 93 7-100 2-100 (100)
9 KOG4558 Uncharacterized conser 99.9 1.4E-22 2.9E-27 159.7 13.8 188 7-198 6-251 (251)
10 COG3871 Uncharacterized stress 99.8 2.1E-21 4.7E-26 146.4 6.4 119 24-173 15-133 (145)
11 TIGR03618 Rv1155_F420 PPOX cla 99.7 3.2E-16 6.9E-21 115.5 14.6 75 30-105 1-76 (117)
12 PF01243 Pyridox_oxidase: Pyri 99.7 4.8E-17 1E-21 113.9 9.0 77 25-102 11-88 (89)
13 TIGR03667 Rv3369 PPOX class pr 99.7 2.4E-16 5.2E-21 119.2 12.0 94 23-123 11-105 (130)
14 TIGR03666 Rv2061_F420 PPOX cla 99.4 2.9E-12 6.2E-17 97.2 11.3 78 23-103 9-87 (132)
15 TIGR03668 Rv0121_F420 PPOX cla 99.2 2.2E-10 4.7E-15 87.9 10.4 79 24-103 10-103 (141)
16 COG5015 Uncharacterized conser 99.1 1.3E-09 2.8E-14 79.9 11.4 115 25-172 10-124 (132)
17 PF10590 PNPOx_C: Pyridoxine 5 99.1 2.7E-10 5.8E-15 69.2 5.4 39 156-198 1-42 (42)
18 PRK06733 hypothetical protein; 99.1 3.7E-09 7.9E-14 81.5 11.9 74 26-102 20-94 (151)
19 PRK03467 hypothetical protein; 98.9 3.6E-08 7.9E-13 75.4 12.3 122 25-181 16-143 (144)
20 PF12900 Pyridox_ox_2: Pyridox 98.3 6.6E-06 1.4E-10 62.8 8.9 74 26-104 12-98 (143)
21 COG3467 Predicted flavin-nucle 98.2 3.1E-05 6.8E-10 60.9 11.3 98 9-119 12-121 (166)
22 PF13883 Pyrid_oxidase_2: Pyri 98.1 1.9E-05 4.1E-10 62.3 8.1 120 26-171 17-156 (170)
23 TIGR00026 hi_GC_TIGR00026 deaz 96.9 0.01 2.3E-07 43.7 8.6 71 27-106 8-84 (113)
24 COG3576 Predicted flavin-nucle 96.8 0.007 1.5E-07 47.9 7.8 80 23-103 38-120 (173)
25 COG3787 Uncharacterized protei 96.5 0.076 1.7E-06 39.9 10.7 120 27-181 13-138 (145)
26 PF04075 DUF385: Domain of unk 92.7 0.36 7.9E-06 36.4 5.8 69 27-104 26-100 (132)
27 KOG3374 Cellular repressor of 91.2 0.78 1.7E-05 36.3 6.1 80 26-105 55-154 (210)
28 PF04289 DUF447: Protein of un 88.4 1.7 3.6E-05 34.4 6.2 51 29-83 3-53 (177)
29 PF04299 FMN_bind_2: Putative 78.7 28 0.00061 27.3 9.3 76 26-103 22-121 (169)
30 COG0748 HugZ Putative heme iro 77.7 0.4 8.7E-06 39.9 -1.5 57 25-84 93-149 (245)
31 COG2808 PaiB Transcriptional r 67.4 24 0.00051 28.7 6.3 79 24-103 20-121 (209)
32 PF01613 Flavin_Reduct: Flavin 54.2 30 0.00066 25.9 4.8 57 27-84 7-64 (154)
33 COG1853 Conserved protein/doma 31.2 2.5E+02 0.0054 21.7 7.0 68 27-95 19-87 (176)
34 KOG0290 Conserved WD40 repeat- 30.3 74 0.0016 27.6 3.8 42 28-74 209-251 (364)
35 COG2457 Uncharacterized conser 29.6 1.8E+02 0.0039 23.6 5.7 51 29-84 18-68 (199)
36 PF13014 KH_3: KH domain 20.7 1.3E+02 0.0028 17.3 2.7 33 62-94 7-43 (43)
No 1
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-40 Score=260.59 Aligned_cols=172 Identities=20% Similarity=0.335 Sum_probs=148.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC
Q 028990 6 TAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE 85 (200)
Q Consensus 6 ~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~ 85 (200)
...+..||++|... .+.+|+.|+|||||++|.|++|+|+++++++. +|+||||..|+|.++|.+||+++++|+|..
T Consensus 28 ~~lF~~Wl~eA~~~--~~~ePnAm~lATvd~~G~P~~R~VLLK~~Der--GfvFyTN~~S~Kg~eLa~np~Aal~F~W~~ 103 (214)
T COG0259 28 LTLFRRWLEEAIRA--EVNEPNAMTLATVDEQGRPSSRIVLLKELDER--GFVFYTNYGSRKGRELAANPYAALLFPWKE 103 (214)
T ss_pred HHHHHHHHHHHHhc--ccCCCceeEEEeecCCCCceeeEEEecccCCC--cEEEEeccCCcchhhHhhCcceeEEecchh
Confidence 35788888888876 47899999999999999999999999999886 999999999999999999999999999999
Q ss_pred CceEEEEEEEEEEEcCCCCChhh----hhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC--------CccCCCCCCCCC
Q 028990 86 SWDQFRINGRVDVIDGSNSDPEK----LQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP--------KEFSLDPCAGPV 153 (200)
Q Consensus 86 ~~~qiri~G~a~~~~~~~~~~~~----~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~~~~~~ 153 (200)
..+||||+|+|+.+++.++++|| +++|+.+|++ .++.+|.+... ...+.+.+.|-|
T Consensus 104 L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS------------~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P 171 (214)
T COG0259 104 LERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWAS------------KQSRPIASRAALEAKVAELTAKFADGEIPRP 171 (214)
T ss_pred ccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhc------------cCccccCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999986 5788888887 45566654332 122333333448
Q ss_pred CCeEEEEEeecEEEeEec---CCCCeEEEEEccCCCCCCCceEEEeec
Q 028990 154 DAFCVLILDPDQVDYLNL---KSNQKLKFMSRLSDNGEKYWASLKTSP 198 (200)
Q Consensus 154 ~~f~v~~i~p~~ve~~~~---~~h~R~~f~~~~~~~~~~~W~~~~l~P 198 (200)
++|++++|.|++||||++ |+|+|++|.++++ .|...+|.|
T Consensus 172 ~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~~g-----~W~~~RL~P 214 (214)
T COG0259 172 PHWGGFRIVPESIEFWQGRPSRLHDRLRYRRDDG-----GWKIERLAP 214 (214)
T ss_pred CCccceEeeeeEEEEecCCCccceeeEEEeecCC-----CeEEEecCC
Confidence 999999999999999999 5999999999843 799999998
No 2
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=2.6e-38 Score=254.72 Aligned_cols=177 Identities=19% Similarity=0.313 Sum_probs=150.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEEC
Q 028990 5 VTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFT 84 (200)
Q Consensus 5 ~~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~ 84 (200)
..+.|++||.+++... ..++++++|||++.+|.|++|+|++++++++ +|+|+||.+|+|++||++||+|+|+||++
T Consensus 8 P~~~~~~wl~~a~~~~--~~~~~~~~lATv~~dG~P~~R~V~lr~~~~~--~l~f~T~~~S~K~~~l~~np~val~~~~~ 83 (195)
T PRK05679 8 PLALFERWLAEAVKAE--LNDPNAMTLATVDEDGRPSQRIVLLKGFDER--GFVFYTNYESRKGRQLAANPKAALLFPWK 83 (195)
T ss_pred HHHHHHHHHHHHHhcC--CCCCceEEEEeeCCCCCEEEEEEEEEEECCC--eEEEEeCCCCHHHHHHhhCCcEEEEEecC
Confidence 3479999999999874 4678999999999999999999999999765 79999999999999999999999999999
Q ss_pred CCceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCC-----cc---CCCCCCCCCCCe
Q 028990 85 ESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPK-----EF---SLDPCAGPVDAF 156 (200)
Q Consensus 85 ~~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~-----~~---~~~~~~~~~~~f 156 (200)
...+||||+|+|+++++++.+ ++|.+.+..+|...+..+||+++.++..- .+ +.+...+.+++|
T Consensus 84 ~~~~qvrv~G~a~~~~~~~~~--------~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~f 155 (195)
T PRK05679 84 SLERQVRVEGRVEKVSAEESD--------AYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGEVPRPPHW 155 (195)
T ss_pred CCCEEEEEEEEEEEeCHHHHH--------HHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCCCCCCCcc
Confidence 999999999999999876554 57999999999875556899999765320 11 111122348899
Q ss_pred EEEEEeecEEEeEecC---CCCeEEEEEccCCCCCCCceEEEeec
Q 028990 157 CVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 198 (200)
Q Consensus 157 ~v~~i~p~~ve~~~~~---~h~R~~f~~~~~~~~~~~W~~~~l~P 198 (200)
|+|+|.|++||||+++ +|+|++|.++++ +|..++|+|
T Consensus 156 ~~~~l~p~~veflql~~~r~H~R~~y~~~~~-----~W~~~~l~P 195 (195)
T PRK05679 156 GGYRVVPESIEFWQGRPSRLHDRILYRRDDG-----GWKIERLAP 195 (195)
T ss_pred EEEEEECCEEEEcCCCCCCCcceEEEEECCC-----CEEEEEeCC
Confidence 9999999999999994 799999998654 699999998
No 3
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=100.00 E-value=4.1e-37 Score=251.21 Aligned_cols=175 Identities=17% Similarity=0.303 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCC
Q 028990 7 APWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES 86 (200)
Q Consensus 7 ~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~ 86 (200)
..++.||.++++. ...+++.++|||++.+|.|++|+|++++++++ +|+|+||.+|+|++||++||+|+|+||++..
T Consensus 32 ~~f~~W~~~a~~~--~~~~~~~~~LaTvd~~G~P~~R~v~lr~~~~~--~l~F~T~~~S~K~~eL~~np~v~l~f~~~~~ 107 (217)
T TIGR00558 32 DLFEIWFNEAIEA--RLTEPNAMTLSTVDESGRPSSRMVLLKELDER--GFVFYTNYGSRKGHQIETNPNAALVFFWPDL 107 (217)
T ss_pred HHHHHHHHHHHhc--CCCCCceEEEEEECCCCCEEEEEEEEEEECCC--cEEEEECCCChHHHHHHhCCcEEEEEEeCCC
Confidence 5788899988875 45689999999999999999999999999865 7999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC-----Cc---cCCCCCCCCCCCeEE
Q 028990 87 WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP-----KE---FSLDPCAGPVDAFCV 158 (200)
Q Consensus 87 ~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~-----~~---~~~~~~~~~~~~f~v 158 (200)
++||||+|+|+++++.+++ .+|.+.+..+|...+..+||+++.++.. .. .+.+...+.+++|||
T Consensus 108 ~~qvrv~G~a~~~~~~~~~--------~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~~p~p~~f~~ 179 (217)
T TIGR00558 108 ERQVRVEGKVEKLPREESD--------AYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDAEIPRPDYWGG 179 (217)
T ss_pred CEEEEEEEEEEECCHHHHH--------HHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCCCCCCCCceEE
Confidence 9999999999998876554 4699888888887555689999875532 11 111122334889999
Q ss_pred EEEeecEEEeEecC---CCCeEEEEEccCCCCCCCceEEEeec
Q 028990 159 LILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 198 (200)
Q Consensus 159 ~~i~p~~ve~~~~~---~h~R~~f~~~~~~~~~~~W~~~~l~P 198 (200)
|+|.|++||||+++ +|+|++|.++++ +|..++|+|
T Consensus 180 ~~l~p~~vEf~~l~~~r~H~R~~y~~~~~-----~W~~~~l~P 217 (217)
T TIGR00558 180 YRVVPEEIEFWQGRPSRLHDRFVYRREND-----PWKRVRLAP 217 (217)
T ss_pred EEEECCEEEEccCCCCCCceEEEEEecCC-----CEEEEEeCC
Confidence 99999999999994 699999998654 799999998
No 4
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=3.8e-36 Score=268.97 Aligned_cols=182 Identities=21% Similarity=0.360 Sum_probs=145.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEE
Q 028990 4 PVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYF 83 (200)
Q Consensus 4 ~~~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~ 83 (200)
+....++.||+++++. ..++++.|+|||++++|.|++|+|++|+++++ +++||||.+|+|++||++||+|+|+|||
T Consensus 269 ~P~~~f~~W~~~a~~~--~~~ep~am~LATvd~~G~P~~R~VlLk~~d~~--g~~F~Tn~~S~K~~eL~~Np~aal~F~w 344 (462)
T PLN03049 269 DPIDQFKEWFDDAVAA--GLREPNAMTLATAGEDGRPSARIVLLKGVDKR--GFVWYTNYDSRKAHELSANPKASLVFYW 344 (462)
T ss_pred CHHHHHHHHHHHHHHc--CCCCCCeeEEEEECCCCCeeEEEEEEeEEcCC--cEEEEECCCCHHHHHHhhCCcEEEEeec
Confidence 4446889999999885 46799999999999999999999999999876 8999999999999999999999999999
Q ss_pred CCCceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC-----Ccc---CCC-CCCCCCC
Q 028990 84 TESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP-----KEF---SLD-PCAGPVD 154 (200)
Q Consensus 84 ~~~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~-----~~~---~~~-~~~~~~~ 154 (200)
+...+||||+|+|++++++++++| |.+.+..+|...+...+++++.+... ..+ +.+ ...+.|+
T Consensus 345 ~~~~rQvRv~G~a~~~~~~~s~~y--------f~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~ 416 (462)
T PLN03049 345 DGLHRQVRVEGSVEKVSEEESDQY--------FHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPK 416 (462)
T ss_pred CCCCEEEEEEEEEEECCHHHHHHH--------HHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 999999999999999998777655 66666666664443334444433221 111 112 1233489
Q ss_pred CeEEEEEeecEEEeEec---CCCCeEEEEEccCCCCCCCceEEEeec
Q 028990 155 AFCVLILDPDQVDYLNL---KSNQKLKFMSRLSDNGEKYWASLKTSP 198 (200)
Q Consensus 155 ~f~v~~i~p~~ve~~~~---~~h~R~~f~~~~~~~~~~~W~~~~l~P 198 (200)
+|++|+|+|++||||++ ++|+|++|+++..+ +.+.|+.++|+|
T Consensus 417 ~w~g~~v~p~~iEfwq~~~~rlHdR~~y~~~~~~-~~~~W~~~rl~P 462 (462)
T PLN03049 417 HWGGYRLKPELIEFWQGRESRLHDRLQYTREEIN-GKSVWKIDRLAP 462 (462)
T ss_pred ceEEEEEEeeEEEEccCCCCCCeeEEEEEecCCC-CCCCEEEEEeCC
Confidence 99999999999999999 48999999986211 123599999998
No 5
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=5.5e-36 Score=269.98 Aligned_cols=182 Identities=18% Similarity=0.312 Sum_probs=148.7
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEE
Q 028990 4 PVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYF 83 (200)
Q Consensus 4 ~~~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~ 83 (200)
+....++.||+++++. +..+++.|+|||++.+|.|++|+|++|+++++ +++||||.+|+|++||++||+|+|+|||
T Consensus 351 dP~~~F~~W~~eA~~~--~~~eP~Am~LATv~~~G~P~~RtVlLk~~d~~--g~~F~Tn~~S~K~~el~~Np~aal~F~w 426 (544)
T PLN02918 351 DPTDQFRKWFDEAVAA--GLREPNAMALSTANKDGKPSSRMVLLKGVDKN--GFVWYTNYESQKGSDLSENPSAALLFYW 426 (544)
T ss_pred CHHHHHHHHHHHHHhc--CCCCCccceEEeeCCCCCeeeEEEEEeEEcCC--ceEEEECCCChhHHHHHhCCcEEEEeee
Confidence 4446889999999885 46799999999999999999999999999875 8999999999999999999999999999
Q ss_pred CCCceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC--------CccCCCCC-CCCCC
Q 028990 84 TESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP--------KEFSLDPC-AGPVD 154 (200)
Q Consensus 84 ~~~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~~-~~~~~ 154 (200)
+...+||||+|+|++++++++++| |.+.+..+|...+...++++|.+.+. +..+.+.. .+-|+
T Consensus 427 ~~l~rQVRi~G~v~~~~~~es~~y--------f~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~ 498 (544)
T PLN02918 427 EELNRQVRVEGSVQKVPESESENY--------FHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPK 498 (544)
T ss_pred ccccEEEEEEEEEEECCHHHHHHH--------HHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999988877 44445555555554567777765442 11122222 33489
Q ss_pred CeEEEEEeecEEEeEec---CCCCeEEEEEccCCCCCCCceEEEeec
Q 028990 155 AFCVLILDPDQVDYLNL---KSNQKLKFMSRLSDNGEKYWASLKTSP 198 (200)
Q Consensus 155 ~f~v~~i~p~~ve~~~~---~~h~R~~f~~~~~~~~~~~W~~~~l~P 198 (200)
+|++|+|.|++|||||+ |+|+|++|++.++ ++.+.|+.++|+|
T Consensus 499 ~WgGy~v~P~~iEFWQgr~~RLHdR~~Y~r~~~-~~~~~W~~~rL~P 544 (544)
T PLN02918 499 NWGGYRLKPNLFEFWQGQQSRLHDRLQYSLQEV-NGKPVWKIHRLAP 544 (544)
T ss_pred CceeEEEecCEEEECCCCCCCccceEEEEecCC-CCCCCeEEEEeCC
Confidence 99999999999999999 5999999999642 1123599999998
No 6
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=225.81 Aligned_cols=181 Identities=15% Similarity=0.287 Sum_probs=149.9
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecC-CCcchhhhhcCCcEEEEE
Q 028990 3 TPVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDT-RSRKIEELKSCPFSEICW 81 (200)
Q Consensus 3 ~~~~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~-~S~K~~~i~~np~v~l~~ 81 (200)
.+....++.||++|.+.+ .+.++..|+|||++.+|+|.+|+|.+++++.+ ++.|||+- .|+|.++|++||.++|+|
T Consensus 34 ~DPv~~F~~wf~EA~~~~-~~~~~~am~LsT~~~d~rvssRmvLlKgl~~~--gf~fytn~~~srk~kdL~~NP~Aal~F 110 (228)
T KOG2586|consen 34 SDPVELFKKWFQEAAKDP-DIGEINAMTLSTADKDGRVSSRMVLLKGLDHD--GFVFYTNYGTSRKGKDLQENPNAALLF 110 (228)
T ss_pred CChHHHHHHHHHHHhhCC-CcCchhheeehhccccCCcceeeeeeecccCC--CeEEEeeccccccccccccCCcceEEE
Confidence 355568999999988874 36678999999999999999999999999886 89999998 999999999999999999
Q ss_pred EECCCceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC--------CccCCCC-CCCC
Q 028990 82 YFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP--------KEFSLDP-CAGP 152 (200)
Q Consensus 82 ~~~~~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~-~~~~ 152 (200)
||+..++||||+|.++.++++++++| |.+.+..+|..-+..++|++|.+.+. .+.+.+. ..+-
T Consensus 111 yw~~l~rQVRveG~ve~l~~ee~e~y--------f~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~~~~Ipk 182 (228)
T KOG2586|consen 111 YWEDLNRQVRVEGIVEKLPREEAEAY--------FKSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGDEQSIPK 182 (228)
T ss_pred eehhccceeEEEeccccCCHHHHHHH--------HhcCcchhhccceecCCCCccCCHHHHHHHHHHHHHHhcccccccC
Confidence 99999999999999999999988766 55555555555444588999887654 1123332 2344
Q ss_pred CCCeEEEEEeecEEEeEec---CCCCeEEEEE-ccCCCCCCCceEEEeec
Q 028990 153 VDAFCVLILDPDQVDYLNL---KSNQKLKFMS-RLSDNGEKYWASLKTSP 198 (200)
Q Consensus 153 ~~~f~v~~i~p~~ve~~~~---~~h~R~~f~~-~~~~~~~~~W~~~~l~P 198 (200)
|.+|++++|.|.++||||+ ++|+|+.|++ +.| +.|...+|.|
T Consensus 183 P~swgg~rl~P~~~EFwQg~~~rLhDR~~yr~~~~d----~~Wk~~rlap 228 (228)
T KOG2586|consen 183 PDSWGGYRLVPQEFEFWQGQPDRLHDRIVYRRLTVD----EDWKLVRLAP 228 (228)
T ss_pred CCcccceEEeeeeehhhcCCchhhhheEEEecccCC----CCeeEEecCC
Confidence 8999999999999999999 5999999994 444 4899999988
No 7
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=186.24 Aligned_cols=188 Identities=32% Similarity=0.568 Sum_probs=144.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCC-CCceEEEEEEEEEe-CC--CCEEEEEecCCCcchhhhhcCC------
Q 028990 6 TAPWKQLLLQALESQSHLKHSIYFQLATVGTN-GRPSNRTVVFRGFQ-DN--TDKIQINSDTRSRKIEELKSCP------ 75 (200)
Q Consensus 6 ~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~d-G~P~~R~v~~r~~~-~~--~~~l~F~Td~~S~K~~~i~~np------ 75 (200)
.|+|+..|.++++.|..+..+.|++|||++.. ++|+.|+|++|+|. .+ .+.|.|.||.+|.|+.||...|
T Consensus 3 lApW~~~~~~~lk~N~dv~~~~yfQlATv~~~~~~PrnRTVvfRgFl~~D~~tn~L~F~TD~rS~Ki~ei~~qp~~~~~s 82 (245)
T COG5135 3 LAPWIPMFIQSLKNNTDVEPFVYFQLATVDELTNKPRNRTVVFRGFLFHDKRTNVLTFNTDMRSSKITEIFIQPNSNNSS 82 (245)
T ss_pred cchhHHHHHHHHhcCCccccceeEEEEeecccCCCCccceEEEeeeeecccccceEEEecchhhhhhhHHhhccccCCCC
Confidence 37899999999999887778899999999965 89999999999997 33 4579999999999999998765
Q ss_pred -----cEEEEEEECCCceEEEEEEEEEEEcCCCCChhh------------------------hhhhhhhhhcCCHhHHhc
Q 028990 76 -----FSEICWYFTESWDQFRINGRVDVIDGSNSDPEK------------------------LQIREKSWFGCSMKARLQ 126 (200)
Q Consensus 76 -----~v~l~~~~~~~~~qiri~G~a~~~~~~~~~~~~------------------------~~~~~~~W~~~~~~~r~~ 126 (200)
-.+.|||+|++.+|+||+|.+..++.+.....+ ...+..+|...+.+.+++
T Consensus 83 ~~~~~~fEaC~yfP~T~eQ~RisGQ~~l~s~~~~~~~~~Pa~~~t~d~l~~~~~r~p~~w~~~~~~r~i~~~~~~Ed~a~ 162 (245)
T COG5135 83 DSKTPFFEACFYFPETWEQYRISGQCFLISKQFKYDIFSPAFSETNDDLTDEEIRTPINWDDDDDKRNIENDEHHEDEAD 162 (245)
T ss_pred CCCccHHHHHhcccchhhheEeeeeEEEEchhhcCcccCchhhhhhhhhccccccCcccCCCchhccccccccCccchhh
Confidence 789999999999999999999999876543211 223444666666777788
Q ss_pred ccCCCC--------------CCcCCCCCCCccCCCCCCCCCCCeEEEEEeecEEEeEecC--CCCeEEEEEccCCCCCCC
Q 028990 127 YLDPEQ--------------GCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK--SNQKLKFMSRLSDNGEKY 190 (200)
Q Consensus 127 ~~~~~p--------------g~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ve~~~~~--~h~R~~f~~~~~~~~~~~ 190 (200)
|..|++ |+.+..+..+.+. .-.....+|+++++.+++|||++|+ +..|.+|.++.+. ..
T Consensus 163 f~ppP~~s~~q~~~~~~P~P~~~~~~e~~~~l~--~~~~~~~~F~lv~le~~~VdfLnL~g~pg~R~l~~rd~n~---~~ 237 (245)
T COG5135 163 FYPPPQLSRHQKSLYRKPAPGQKLTSETSKQLD--KLHAGLENFGLVCLEVDSVDFLNLKGRPGERWLFQRDDNK---DL 237 (245)
T ss_pred cCCCCCCCcccccccccCCCcccccccChhhHH--HHHhhhcceeEEEeecCceeeeeecCCCCceeeEeccCCc---ch
Confidence 776542 2222111110000 0012368999999999999999994 7899999998763 48
Q ss_pred ceEEEeec
Q 028990 191 WASLKTSP 198 (200)
Q Consensus 191 W~~~~l~P 198 (200)
|+.++++|
T Consensus 238 W~~q~Vnp 245 (245)
T COG5135 238 WEEQEVNP 245 (245)
T ss_pred hhccccCC
Confidence 99999997
No 8
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=99.93 E-value=2.4e-25 Score=160.82 Aligned_cols=93 Identities=43% Similarity=0.779 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCCeEEEEeeC-CCCCceEEEEEEEEEeCC----CCEEEEEecCCCcchhhhh-cCCcEEEE
Q 028990 7 APWKQLLLQALESQSHLKHSIYFQLATVG-TNGRPSNRTVVFRGFQDN----TDKIQINSDTRSRKIEELK-SCPFSEIC 80 (200)
Q Consensus 7 ~~w~~~l~~~~~~~~~~~~~~~~~LATv~-~dG~P~~R~v~~r~~~~~----~~~l~F~Td~~S~K~~~i~-~np~v~l~ 80 (200)
|+|++.|+++++++ .....++++|||++ ++|.|++|+|+||+|..+ .+.|.|+||.||+|++||. .||+|+++
T Consensus 2 ~~Wr~~L~~~~~~~-~~~~~~~~~LATv~~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~ 80 (100)
T PF12766_consen 2 PPWRQLLERALKKN-RSHPFRYFQLATVDPPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELV 80 (100)
T ss_dssp -TCHHHHHHHHHHT-TTCGGGCEEEEEEE-TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEE
T ss_pred CccHHHHHHHHhhc-CCCCCceeEEEEecCCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEE
Confidence 68999999999885 44577999999999 789999999999999986 5789999999999999999 99999999
Q ss_pred EEECCCceEEEEEEEEEEEc
Q 028990 81 WYFTESWDQFRINGRVDVID 100 (200)
Q Consensus 81 ~~~~~~~~qiri~G~a~~~~ 100 (200)
||+++.+.|+||+|+|.+++
T Consensus 81 ~~~~~~~~Q~Ri~G~a~ii~ 100 (100)
T PF12766_consen 81 FWFPETREQFRIRGRASIIG 100 (100)
T ss_dssp EEECCCTEEEEEEEEEEEE-
T ss_pred EEeCCccEEEEEEEEEEEEC
Confidence 99999999999999999974
No 9
>KOG4558 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=159.68 Aligned_cols=188 Identities=34% Similarity=0.520 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCCeEEEEeeC-CCCCceEEEEEEEEEeCC---CCEEEEEecCCCcchhhhhc---------
Q 028990 7 APWKQLLLQALESQSHLKHSIYFQLATVG-TNGRPSNRTVVFRGFQDN---TDKIQINSDTRSRKIEELKS--------- 73 (200)
Q Consensus 7 ~~w~~~l~~~~~~~~~~~~~~~~~LATv~-~dG~P~~R~v~~r~~~~~---~~~l~F~Td~~S~K~~~i~~--------- 73 (200)
++|...|-++...+.+.-.+.|++|||++ .+++|+.|||+||+|.-. .+.+.|.||.+|.|+-.+-.
T Consensus 6 apw~~~l~~~~~~ns~~~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~ 85 (251)
T KOG4558|consen 6 APWLLKLLKENVDNSGVIHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQK 85 (251)
T ss_pred hhHHHHHHHhhhccCCccccceEEEeecccccCCcccceEEEecceecCCCCcceeeeccchhhhhhhhhhchhhhcccc
Confidence 56777676666666777788999999999 679999999999999633 24599999999999766421
Q ss_pred -----CCc-EEEEEEECCCceEEEEEEEEEEEcCCCCChh------------------------hhhhhhhhhhcCCHhH
Q 028990 74 -----CPF-SEICWYFTESWDQFRINGRVDVIDGSNSDPE------------------------KLQIREKSWFGCSMKA 123 (200)
Q Consensus 74 -----np~-v~l~~~~~~~~~qiri~G~a~~~~~~~~~~~------------------------~~~~~~~~W~~~~~~~ 123 (200)
.|- .++|||+|++.+|+||+|++..++.+.++.. +..++ .+|...++..
T Consensus 86 ~~~~~~P~~femC~yfp~TweQ~RisGqi~~it~~~~d~~~~dAdn~dq~~l~~s~~~I~~d~~~e~e~-~~~~~~~~~~ 164 (251)
T KOG4558|consen 86 NTFPSGPIPFEMCGYFPKTWEQIRISGQIWLITPELADRNEFDADNLDQDHLINSNGRIPEDWSWEEER-RIWELHSPEL 164 (251)
T ss_pred ccccCCCcccceeeeechhhhheEecceEEEEcccccccccCCccccchHHHhhhhccccccccchhhh-cccccCCHHH
Confidence 243 8999999999999999999999954322210 11111 2555555555
Q ss_pred HhcccC--------------CCCCCcCCCCCCCccCCCCCCCCCCCeEEEEEeecEEEeEecC-CCCeEEEEEccCCCCC
Q 028990 124 RLQYLD--------------PEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK-SNQKLKFMSRLSDNGE 188 (200)
Q Consensus 124 r~~~~~--------------~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ve~~~~~-~h~R~~f~~~~~~~~~ 188 (200)
|+.|.+ |.||+.+..+....... .....++|+++++.+++|||++|. +..|.+|....+ -++
T Consensus 165 ~~~~~~~~s~sk~~~~~~~~P~pg~~~~~e~~~~~~~--~~~~~~~f~lv~le~~~VdfLNLk~~~gr~~~~~~~g-~~e 241 (251)
T KOG4558|consen 165 RASFSTPPSYSKYQGDVKVSPLPGTLTGKEDPGVIEA--WKTAWGRFSLVVLEANEVDFLNLKPPPGRKRVLHNRG-LNE 241 (251)
T ss_pred HHhhcCCcchhhccCceeecCCCCccccccCccchhh--hhccccceeEEEEeccccceeeccCCCcceEEEeccC-CCc
Confidence 555543 45555544333211000 012479999999999999999996 444677766543 357
Q ss_pred CCceEEEeec
Q 028990 189 KYWASLKTSP 198 (200)
Q Consensus 189 ~~W~~~~l~P 198 (200)
+.|++++++|
T Consensus 242 k~W~s~~Vnp 251 (251)
T KOG4558|consen 242 KQWSSTRVNP 251 (251)
T ss_pred ccccccccCC
Confidence 8999999998
No 10
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=99.84 E-value=2.1e-21 Score=146.40 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=99.2
Q ss_pred CCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCceEEEEEEEEEEEcCCC
Q 028990 24 KHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSN 103 (200)
Q Consensus 24 ~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~~qiri~G~a~~~~~~~ 103 (200)
...++++|+|+.++|.||+|+|.+.+-... +.|||+|+..|+|+.+|+.||+|+++|..+...-++.|.|+|+++.|..
T Consensus 15 e~~kv~~l~tv~~~g~phsRpM~f~hdg~~-~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~dra 93 (145)
T COG3871 15 EGSKVGMLATVQENGHPHSRPMTFNHDGPK-GTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDHDAFVEVSGTAELVEDRA 93 (145)
T ss_pred hhCceEEEEEecCCCCccccceeccCCCCc-ccEEeeccCchHHHHHHhhCCcEEEEEecCCCcceEEEEEEEEeeccHH
Confidence 356899999999999999999997543322 6899999999999999999999999999988878999999999999987
Q ss_pred CChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCCccCCCCCCCCCCCeEEEEEeecEEEeEecCC
Q 028990 104 SDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS 173 (200)
Q Consensus 104 ~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ve~~~~~~ 173 (200)
... .+|.+. .+.||..+. ++|++|+|+|.|+.++||+-..
T Consensus 94 ~~d-------~~W~~~---------------------~~~wFe~Gk--edP~l~~Lkv~~e~i~yw~~~~ 133 (145)
T COG3871 94 KID-------ELWTSV---------------------LEAWFEQGK--EDPDLTMLKVTAEDIDYWNSGD 133 (145)
T ss_pred HHH-------Hhhhhh---------------------HHHHHhcCC--CCCCeEEEEEchhHhHHHhccC
Confidence 653 567663 244554332 3789999999999999998743
No 11
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.72 E-value=3.2e-16 Score=115.54 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=65.6
Q ss_pred EEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCc-eEEEEEEEEEEEcCCCCC
Q 028990 30 QLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESW-DQFRINGRVDVIDGSNSD 105 (200)
Q Consensus 30 ~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~-~qiri~G~a~~~~~~~~~ 105 (200)
+|||++++|.|++++|.+... .+.+.|||+|+..|+|+++|++||+|+++|+++... ++++|+|+|+++++.+..
T Consensus 1 ~LaTv~~~G~P~~~pv~~~~~-~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~~v~i~G~a~~v~d~~~~ 76 (117)
T TIGR03618 1 VLATIRADGRPQLSPVWFGVD-PDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVEDPDPV 76 (117)
T ss_pred CEEEECCCCCEEEEEEEEEEc-CCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCccEEEEEEEEEEecCCccc
Confidence 599999999999999988532 233579999999999999999999999999998766 799999999999987643
No 12
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.71 E-value=4.8e-17 Score=113.90 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=69.9
Q ss_pred CCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC-CceEEEEEEEEEEEcCC
Q 028990 25 HSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE-SWDQFRINGRVDVIDGS 102 (200)
Q Consensus 25 ~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~-~~~qiri~G~a~~~~~~ 102 (200)
+.++++|||+++||.|++|+|.+.... +.+.|+|.|+..|.|+++|++||+|+++|..+. ...+++|.|+|++++++
T Consensus 11 ~~~~~~laTv~~dG~P~~~~v~~~~~~-~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~~~~~~v~~~G~a~~~~d~ 88 (89)
T PF01243_consen 11 ESKYCVLATVDEDGRPHASPVWFVYDD-DDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPEGTRRGVRVSGTAEILTDE 88 (89)
T ss_dssp STSEEEEEEEETTSEEEEEEEEEEEEC-TTTEEEEEEETTSHHHHHHHHSTEEEEEEEETTTTTEEEEEEEEEEEESHH
T ss_pred CCCEEEEEEECCCCCEEEEEEeeecCC-ceeEEEEeecCCCCchhhCccCCeEEEEEEEcCcCceEEEEEEEEEEEcCC
Confidence 458999999999999999999986544 435899999999999999999999999999999 88999999999999875
No 13
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.70 E-value=2.4e-16 Score=119.21 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCC-ceEEEEEEEEEEEcC
Q 028990 23 LKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES-WDQFRINGRVDVIDG 101 (200)
Q Consensus 23 ~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~-~~qiri~G~a~~~~~ 101 (200)
+.+.++++|||+++||.|++|||.+. +++ +.|+|+|+.+|.|+++|++||+|+|+|+++.. ..+++|+|+|++++|
T Consensus 11 L~~~~~~~LaT~~~dG~P~~~P~~~~-~~d--~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~~~~v~v~G~a~i~~d 87 (130)
T TIGR03667 11 LREESIVWLTTVRRSGQPQPVPVWFL-WDG--TEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVVAD 87 (130)
T ss_pred hcCCCeEEEEEECCCCceEEEEEEEE-EEC--CEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCCceEEEEEEEEEEeCC
Confidence 34568999999999999999999984 554 48999999999999999999999999998654 479999999999988
Q ss_pred CCCChhhhhhhhhhhhcCCHhH
Q 028990 102 SNSDPEKLQIREKSWFGCSMKA 123 (200)
Q Consensus 102 ~~~~~~~~~~~~~~W~~~~~~~ 123 (200)
.+... ....+|...++..
T Consensus 88 ~~~~~----~~~~~~~~y~~~~ 105 (130)
T TIGR03667 88 APPAR----EIPAYLAKYREDA 105 (130)
T ss_pred chhHH----HHHHHHHHhhHHH
Confidence 75432 2245677654333
No 14
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.42 E-value=2.9e-12 Score=97.22 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=66.8
Q ss_pred CCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCc-eEEEEEEEEEEEcC
Q 028990 23 LKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESW-DQFRINGRVDVIDG 101 (200)
Q Consensus 23 ~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~-~qiri~G~a~~~~~ 101 (200)
+.+.++++|+|+++||.|+++||.+ ..+++ .|||+|...++|+++|++||+|++++...... ..+.|+|+|+++++
T Consensus 9 L~~~~~~~LaT~~~dG~P~~~Pv~~-~~d~g--~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~~~~v~v~G~A~~v~~ 85 (132)
T TIGR03666 9 LARARYALLTTFRKDGTPVPTPVWA-AVDGD--KLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGRPTGPVVPGRARILDG 85 (132)
T ss_pred hccCcEEEEEEECCCCcEEEEEEEE-EEECC--EEEEEECCcCHHHHHHHhCCCEEEEEECCCCCEeEEEEEEEEEEEcc
Confidence 4467899999999999999999998 34554 89999999999999999999999998776533 57999999999954
Q ss_pred CC
Q 028990 102 SN 103 (200)
Q Consensus 102 ~~ 103 (200)
++
T Consensus 86 ~e 87 (132)
T TIGR03666 86 AE 87 (132)
T ss_pred hh
Confidence 43
No 15
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.19 E-value=2.2e-10 Score=87.86 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=63.0
Q ss_pred CCCCeEEEEeeCCCCCceEEEEEEEEEeC-----CCCEEEEEec------CCCcchhhhhcCCcEEEEEEECCC----ce
Q 028990 24 KHSIYFQLATVGTNGRPSNRTVVFRGFQD-----NTDKIQINSD------TRSRKIEELKSCPFSEICWYFTES----WD 88 (200)
Q Consensus 24 ~~~~~~~LATv~~dG~P~~R~v~~r~~~~-----~~~~l~F~Td------~~S~K~~~i~~np~v~l~~~~~~~----~~ 88 (200)
.+.+++.|||+++||.|++.||.+. ++. +.+.|||+++ ..+.|.++|++||+|++++..... .+
T Consensus 10 ~~~~~~~LaTv~~dG~P~vvPv~f~-~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~~~~~~~~~ 88 (141)
T TIGR03668 10 AQARVARLATVSPDGEPHLVPVVFA-VGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRYDDDWTRLW 88 (141)
T ss_pred ccCCEEEEEEECCCCCeEEEeEEEE-EccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecCCCCccceE
Confidence 4568999999999999999999985 441 1248898854 556899999999999998763221 23
Q ss_pred EEEEEEEEEEEcCCC
Q 028990 89 QFRINGRVDVIDGSN 103 (200)
Q Consensus 89 qiri~G~a~~~~~~~ 103 (200)
.+.++|+|+++++.+
T Consensus 89 ~v~v~G~a~~~~d~~ 103 (141)
T TIGR03668 89 WVRADGRAEILRPGE 103 (141)
T ss_pred EEEEEEEEEEecCCc
Confidence 699999999999886
No 16
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.3e-09 Score=79.91 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=86.0
Q ss_pred CCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCceEEEEEEEEEEEcCCCC
Q 028990 25 HSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNS 104 (200)
Q Consensus 25 ~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~~qiri~G~a~~~~~~~~ 104 (200)
+...+.|||++ +|.|++|+.-.--..+ +.|||.|.....-++||.+||.|++|-... ....|||+|+|..+.+-+.
T Consensus 10 en~~~~laTve-~gkPrvRpfq~~f~~g--~KlYfcTantK~~yKqik~np~vefcg~~k-dg~~vrlrg~a~f~~niel 85 (132)
T COG5015 10 ENKSVALATVE-DGKPRVRPFQVMFVEG--EKLYFCTANTKPYYKQIKKNPEVEFCGMDK-DGVMVRLRGRAEFVENIEL 85 (132)
T ss_pred hCCcEEEEEcc-CCCcceeeccceeeeC--CEEEEEeCCChHHHHHHhhCCCeEEEEecC-CceEEEEeeeEEeccchHH
Confidence 45678999998 8999999976543444 499999999999999999999999999876 5679999999999998765
Q ss_pred ChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCCccCCCCCCCCCCCeEEEEEeecEEEeEecC
Q 028990 105 DPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK 172 (200)
Q Consensus 105 ~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ve~~~~~ 172 (200)
... +.... +.++.++.. ++.|-|.|+.+.-.+.+-.++.
T Consensus 86 kk~-------ale~y-------------------P~Lkeiy~t---ddnpifevfyld~~e~~m~df~ 124 (132)
T COG5015 86 KKL-------ALEIY-------------------PVLKEIYPT---DDNPIFEVFYLDSGEGEMYDFS 124 (132)
T ss_pred HHH-------Hhhhc-------------------hhhHhhccC---CCCCEEEEEEEeeccEEEEEec
Confidence 431 11110 112223321 1246799999999888887763
No 17
>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1.4.3.5 from EC) is an enzyme that is involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The enzyme requires the presence of flavin mononucleotide (FMN) as a cofactor, although there is some evidence that coenzyme F420 may perform this role in some species []. The sequences of the enzyme from bacterial (genes pdxH or fprA) [] and fungal (gene PDX3) [] sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related [] to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). This entry represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In P21159 from SWISSPROT, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule []. ; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A 1JNW_A 1G78_A 1TY9_A 1CI0_A 1NRG_A ....
Probab=99.09 E-value=2.7e-10 Score=69.25 Aligned_cols=39 Identities=10% Similarity=0.390 Sum_probs=34.3
Q ss_pred eEEEEEeecEEEeEec---CCCCeEEEEEccCCCCCCCceEEEeec
Q 028990 156 FCVLILDPDQVDYLNL---KSNQKLKFMSRLSDNGEKYWASLKTSP 198 (200)
Q Consensus 156 f~v~~i~p~~ve~~~~---~~h~R~~f~~~~~~~~~~~W~~~~l~P 198 (200)
|++++|.|++||||++ ++|+|++|++++++ +|+.++|.|
T Consensus 1 WgGy~l~P~~iEFWqg~~~RlHdR~~y~r~~~~----~W~~~rL~P 42 (42)
T PF10590_consen 1 WGGYRLVPEEIEFWQGRPDRLHDRIRYTRDEDG----GWTKERLQP 42 (42)
T ss_dssp EEEEEEEECEEEEEEEETTSEEEEEEEEEETTT----CEEEEEE-T
T ss_pred CCeEEEEcCEEEEeCCCCCCCEEEEEEEecCCC----CEEEEEEcC
Confidence 6899999999999999 58999999998552 799999998
No 18
>PRK06733 hypothetical protein; Provisional
Probab=99.06 E-value=3.7e-09 Score=81.46 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCeEEEEeeC-CCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCceEEEEEEEEEEEcCC
Q 028990 26 SIYFQLATVG-TNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGS 102 (200)
Q Consensus 26 ~~~~~LATv~-~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~~qiri~G~a~~~~~~ 102 (200)
.+++.|||++ ++|.|++.++..-..-++ ..|+|.-+.+|.-++||++||+|+|++|.++.. ++|+|+|+++++.
T Consensus 20 ~~~~~laTv~kedG~Pnv~~Iswv~a~d~-~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~~--yqIkG~a~i~~e~ 94 (151)
T PRK06733 20 ERIVTLATTDFEKQVPNVSAISWVYAVSK-TSIRFAVDQRSRIVENIRHNPGVVLTIIANESV--YSISGAAEILTDR 94 (151)
T ss_pred CceEEEEEEccCCCceeEEEEEEEEEcCC-CEEEEEEccCcHhHHHHhhCCcEEEEEEeCCcE--EEEEEEEEEEeee
Confidence 3679999999 499999999975333332 599999999999999999999999999998654 9999999999854
No 19
>PRK03467 hypothetical protein; Provisional
Probab=98.91 E-value=3.6e-08 Score=75.43 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=87.6
Q ss_pred CCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCC----ceEEEEEEEEEEEc
Q 028990 25 HSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES----WDQFRINGRVDVID 100 (200)
Q Consensus 25 ~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~----~~qiri~G~a~~~~ 100 (200)
..++++|||.+.+| |.+-.+.+ .|+++.-.|||.|+..|++++.+.+||+|+.++..+.. -++|.++|+++.++
T Consensus 16 ~~hvltLa~~~~~~-~w~A~cFY-~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~GvQ~~G~~~~l~ 93 (144)
T PRK03467 16 KQHVVTLCVGQEGE-LWCANCFY-VFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRGVQFKGEIRRLE 93 (144)
T ss_pred hCcEEEEEEEcCCC-cceEEEEE-EEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceEEEEEEEEEecC
Confidence 45899999998654 77778855 57877678999999999999999999999999975532 36888999999998
Q ss_pred CCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCCccCCCCCCCCCCCeEEEEEeecEEEeEecC--CCCeEE
Q 028990 101 GSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK--SNQKLK 178 (200)
Q Consensus 101 ~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ve~~~~~--~h~R~~ 178 (200)
+++.. .+|+.|...-|-... . +. -++.|.++++-|-+.+ ...+..
T Consensus 94 ~~e~~----------------~Ar~~Y~~rFP~A~~-------------~-~~---~iw~l~l~~iK~tdN~LGFgkKl~ 140 (144)
T PRK03467 94 GEESD----------------AARKRYNRRFPVARA-------------L-SA---PVWELRLDEIKMTDNTLGFGKKLH 140 (144)
T ss_pred hhHHH----------------HHHHHHHHhCcchhc-------------c-CC---ceEEEEEEEEEEeccccccccceE
Confidence 76432 224444432111110 0 11 2788899999988864 556666
Q ss_pred EEE
Q 028990 179 FMS 181 (200)
Q Consensus 179 f~~ 181 (200)
|.+
T Consensus 141 w~r 143 (144)
T PRK03467 141 WLR 143 (144)
T ss_pred Eec
Confidence 654
No 20
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.27 E-value=6.6e-06 Score=62.75 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=61.5
Q ss_pred CCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEEC------CC-------ceEEEE
Q 028990 26 SIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFT------ES-------WDQFRI 92 (200)
Q Consensus 26 ~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~------~~-------~~qiri 92 (200)
..++.||+++ +|.|.+.||.+ .++++ .|||+|...++|...|++|| |++++... .. .+.+.+
T Consensus 12 ~~~g~la~~~-~~~Py~vP~~f-~~~~~--~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~~~~~y~SVi~ 86 (143)
T PF12900_consen 12 APVGRLAFVD-DGYPYIVPVNF-VYDGG--SLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACSFSMNYRSVIV 86 (143)
T ss_dssp -SEEEEEEEE-TTEEEEEEEEE-EEETT--EEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGGEEEEEEEEEE
T ss_pred CCEEEEEEEe-CCEEEEEEEEE-EEECC--EEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCcCcceEEEEEE
Confidence 4789999999 78899999998 46665 89999999999999999999 99988751 11 357999
Q ss_pred EEEEEEEcCCCC
Q 028990 93 NGRVDVIDGSNS 104 (200)
Q Consensus 93 ~G~a~~~~~~~~ 104 (200)
.|+++++++.+.
T Consensus 87 ~G~~~~v~d~~e 98 (143)
T PF12900_consen 87 FGRAEEVEDEEE 98 (143)
T ss_dssp EEEEEEEHSHHH
T ss_pred EEEEEEeCCHHH
Confidence 999999977643
No 21
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=98.19 E-value=3.1e-05 Score=60.92 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC---
Q 028990 9 WKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE--- 85 (200)
Q Consensus 9 w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~--- 85 (200)
+.+.+.+.+. ..+++.||+++ +|.|.+-||.+ ++.++ .|||++...++|+..|..||.|++......
T Consensus 12 ~~~~i~~~l~------~~~~~~La~~~-~~~PyivP~~y-~~~~~--~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~ 81 (166)
T COG3467 12 SDEEIDAILA------AGRVGRLAFAG-DGQPYVVPLNY-GYEGG--HLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLV 81 (166)
T ss_pred CHHHHHHHHh------hCCEEEEEEcC-CCCcEEEEeEe-EEeCC--eEEEEeCCcchhhHHhhcCCcEEEEEEccccce
Confidence 3444555444 45899999998 56699999998 46665 799999999999999999999999997654
Q ss_pred ---------CceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcC
Q 028990 86 ---------SWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 119 (200)
Q Consensus 86 ---------~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~ 119 (200)
..+.+-+.|+++.+++.+... .....+|.-.
T Consensus 82 ~~~~~~~s~~y~SVvv~G~~~~l~~~~~k~---~~l~~~~~~~ 121 (166)
T COG3467 82 LKSPFNSSRNYRSVVVFGRAEELSDLEEKA---AALDHAWSLL 121 (166)
T ss_pred ecccccCCcceEEEEEEeEEEEcCChHHHH---HHHHHHHHHh
Confidence 235789999999999876432 1224456543
No 22
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=98.08 E-value=1.9e-05 Score=62.32 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCeEEEEeeCC----CCCceEEEEEEEE--EeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCc------------
Q 028990 26 SIYFQLATVGT----NGRPSNRTVVFRG--FQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESW------------ 87 (200)
Q Consensus 26 ~~~~~LATv~~----dG~P~~R~v~~r~--~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~------------ 87 (200)
.+.++|+|++. +|.|-.-.+.+-. ..+..+..+|+-..-+...+||++||+|+|++..+...
T Consensus 17 ~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~~~~~~~~~dp~~~ 96 (170)
T PF13883_consen 17 SRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQGGDCDNSGVDPEDP 96 (170)
T ss_dssp -SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGSSHHHHHT--TTST
T ss_pred CCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCCCcccccCCCCCCC
Confidence 47889999998 7999988777630 01334689999999999999999999999999865432
Q ss_pred --eEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCCccCCCCCCCCCCCeEEEEEeecE
Q 028990 88 --DQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQ 165 (200)
Q Consensus 88 --~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ 165 (200)
--+.|.|+++.+++++.. ..+++|....|.. +.|.... .+..|..+++.+++
T Consensus 97 ~~~RvtL~G~~~~v~~~e~~----------------~a~~~yl~~HP~a-------~~w~~~~---~~hdf~~~rl~i~~ 150 (170)
T PF13883_consen 97 ACPRVTLTGRAEPVPPDEAA----------------AARAAYLSRHPDA-------KHWLPFN---SPHDFFFYRLEIER 150 (170)
T ss_dssp TS-EEEEEEEEEE--TTTHH----------------HHHHHHHHH-GGG-------GGS-GG------G--EEEEEEEEE
T ss_pred CCcEEEEEEEEEEcCchHHH----------------HHHHHHHHHCcCc-------ccccccc---ccCccEEEEEEEEE
Confidence 369999999999855422 1355555433322 2232211 24689999999999
Q ss_pred EEeEec
Q 028990 166 VDYLNL 171 (200)
Q Consensus 166 ve~~~~ 171 (200)
|-|..+
T Consensus 151 v~~vgG 156 (170)
T PF13883_consen 151 VYLVGG 156 (170)
T ss_dssp EEEE-S
T ss_pred EEEECc
Confidence 987765
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=96.87 E-value=0.01 Score=43.68 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=54.2
Q ss_pred CeEEEEeeC-CCCCceEEEEEEEEEeCCCCEEEEE-ecC----CCcchhhhhcCCcEEEEEEECCCceEEEEEEEEEEEc
Q 028990 27 IYFQLATVG-TNGRPSNRTVVFRGFQDNTDKIQIN-SDT----RSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVID 100 (200)
Q Consensus 27 ~~~~LATv~-~dG~P~~R~v~~r~~~~~~~~l~F~-Td~----~S~K~~~i~~np~v~l~~~~~~~~~qiri~G~a~~~~ 100 (200)
.++.|.|++ .+|.|+.-+|.+.. ++ +.++++ ++. .+..++||.+||.|.+.+- . -+..++|.+++
T Consensus 8 p~~lL~t~GRkSG~~r~tpl~~~~-~~--~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~----g--~~~~~~ar~v~ 78 (113)
T TIGR00026 8 PVLLLTTTGRKSGKPRTTPVTYVR-HD--PGVLIVASNGGAPRHPDWYKNLKANPRVRVRVG----G--KTFVATARLVS 78 (113)
T ss_pred CEEEEEECCCCCCcEEEEEEEEEE-EC--CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEEC----C--EEEEEEEEECC
Confidence 578899996 78999999987743 23 367765 665 4777999999999999871 1 25799999999
Q ss_pred CCCCCh
Q 028990 101 GSNSDP 106 (200)
Q Consensus 101 ~~~~~~ 106 (200)
+++.+.
T Consensus 79 ~~e~~~ 84 (113)
T TIGR00026 79 GDERDQ 84 (113)
T ss_pred chhHHH
Confidence 887653
No 24
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=96.82 E-value=0.007 Score=47.92 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCCCCeEEEEeeCCCCCceEEEEEEEE-EeCCCCEEEEEecCCCcchh-hhhcCCcEEEEEEEC-CCceEEEEEEEEEEE
Q 028990 23 LKHSIYFQLATVGTNGRPSNRTVVFRG-FQDNTDKIQINSDTRSRKIE-ELKSCPFSEICWYFT-ESWDQFRINGRVDVI 99 (200)
Q Consensus 23 ~~~~~~~~LATv~~dG~P~~R~v~~r~-~~~~~~~l~F~Td~~S~K~~-~i~~np~v~l~~~~~-~~~~qiri~G~a~~~ 99 (200)
+.-..++.|||+|.||.|..-++.+-. .+.+ +.+....+....|.. +|.+||++++.++.. .....+.|.|++++.
T Consensus 38 ~~~~~~~~laT~d~dG~p~~~~~p~~qr~d~~-~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~~~~~f~v~gt~~I~ 116 (173)
T COG3576 38 IQTSQLAALATVDKDGPPNVDPIPFAQRGDPA-GFTIVIDDNTAGKTDRNLGNNPKITLRNILRNRRALLFLVKGTARIQ 116 (173)
T ss_pred hccccEEEEEEeccCCCCCcCccchhhccCCC-CceEEeCcccccccccccccCccceeEEeccCCccceEEecceEEEE
Confidence 334689999999999999988876422 2322 224444455555544 499999999999987 356689999999998
Q ss_pred cCCC
Q 028990 100 DGSN 103 (200)
Q Consensus 100 ~~~~ 103 (200)
....
T Consensus 117 ~~g~ 120 (173)
T COG3576 117 GRGA 120 (173)
T ss_pred eccc
Confidence 8743
No 25
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.076 Score=39.86 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=85.3
Q ss_pred CeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCC----ceEEEEEEEEEEEcCC
Q 028990 27 IYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES----WDQFRINGRVDVIDGS 102 (200)
Q Consensus 27 ~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~----~~qiri~G~a~~~~~~ 102 (200)
.+++++-.+ +|.|.+-...+ .||+....|++.|+..+++.+=+..|+.|+.+..-+.. -++|..+|..+.+..+
T Consensus 13 ~v~Tw~~~~-e~~~w~asafY-vFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQfkge~~~l~~~ 90 (145)
T COG3787 13 HVLTWCVQQ-EGELWCASAFY-VFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQFKGEISRLSGE 90 (145)
T ss_pred heeeeeeec-CCceeeeeeEE-EEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeeeeeeeehhhhcc
Confidence 567888886 56688877755 57877778999999999999999999999999987643 3678889998888877
Q ss_pred CCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCCccCCCCCCCCCCCeEEEEEeecEEEeEec--CCCCeEEEE
Q 028990 103 NSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL--KSNQKLKFM 180 (200)
Q Consensus 103 ~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~i~p~~ve~~~~--~~h~R~~f~ 180 (200)
+++ .+|..|.+.-|-..+ ..-.|+.|.++++.|-+. .....+.|.
T Consensus 91 q~~----------------~Ark~Y~~rfp~akv-----------------d~a~vwqleL~~ikftdNaLG~~kklew~ 137 (145)
T COG3787 91 QSD----------------AARKAYNRRFPVAKV-----------------DSAPVWQLELDEIKFTDNALGFGKKLEWL 137 (145)
T ss_pred hHH----------------HHHHHHhccCchhhc-----------------ccCceEEeeeeeEEeecccccccceEEEe
Confidence 654 345555543211111 112466678888888775 355666655
Q ss_pred E
Q 028990 181 S 181 (200)
Q Consensus 181 ~ 181 (200)
+
T Consensus 138 r 138 (145)
T COG3787 138 R 138 (145)
T ss_pred c
Confidence 5
No 26
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=92.73 E-value=0.36 Score=36.43 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=46.8
Q ss_pred CeEEEEeeC-CCCCceEEEEEEEEEeCCCCEEEEEec-----CCCcchhhhhcCCcEEEEEEECCCceEEEEEEEEEEEc
Q 028990 27 IYFQLATVG-TNGRPSNRTVVFRGFQDNTDKIQINSD-----TRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVID 100 (200)
Q Consensus 27 ~~~~LATv~-~dG~P~~R~v~~r~~~~~~~~l~F~Td-----~~S~K~~~i~~np~v~l~~~~~~~~~qiri~G~a~~~~ 100 (200)
..+.|.|.+ ..|.|+.-+|.+... + +.+++... ..+.=++||.+||.|.+.+ . .-+..++|..++
T Consensus 26 ~~~lLtt~GRkSG~~r~tpl~~~~~-g--~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~--~----g~~~~~~a~~~~ 96 (132)
T PF04075_consen 26 PVLLLTTTGRKSGRPRRTPLVYVRD-G--GRLVVVASNGGAPRHPDWYRNLRANPEVTVEV--G----GRRRRVRAREVT 96 (132)
T ss_dssp EEEEEEEE-TTT-SEEEEEEEEEEE-T--TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEE--T----TEEEEEEEEEE-
T ss_pred cEEEEEECCCCCCCeEEEEEEEEEe-C--CEEEEEEccCCCCCCChhHHhhhhCCcEEEEE--C----CEEEEEEEEEcC
Confidence 378899997 679999999976433 3 36666644 3566799999999999875 1 246777888888
Q ss_pred CCCC
Q 028990 101 GSNS 104 (200)
Q Consensus 101 ~~~~ 104 (200)
+++.
T Consensus 97 ~~er 100 (132)
T PF04075_consen 97 DDER 100 (132)
T ss_dssp HHHH
T ss_pred chHH
Confidence 6643
No 27
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=91.25 E-value=0.78 Score=36.30 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=55.8
Q ss_pred CCeEEEEeeCCC----CCceEEEEEEEEEe--CCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCc------------
Q 028990 26 SIYFQLATVGTN----GRPSNRTVVFRGFQ--DNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESW------------ 87 (200)
Q Consensus 26 ~~~~~LATv~~d----G~P~~R~v~~r~~~--~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~------------ 87 (200)
.....|+|.+-+ |+|-+-.+.+-.=+ .+.+..||+-..--.-+.+.++|+++.|+|-...+.
T Consensus 55 ~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~qt~~Ck~~g~DPm~P 134 (210)
T KOG3374|consen 55 ANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQTLRCKEGGKDPMEP 134 (210)
T ss_pred cccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEeeccccchhhcCCCCCCCc
Confidence 456778888754 66666555542111 124578999666667789999999999999875433
Q ss_pred --eEEEEEEEEEEEcCCCCC
Q 028990 88 --DQFRINGRVDVIDGSNSD 105 (200)
Q Consensus 88 --~qiri~G~a~~~~~~~~~ 105 (200)
--+.|+|++.++...+.+
T Consensus 135 tC~~~mlsG~v~k~~~~~~~ 154 (210)
T KOG3374|consen 135 TCARSMLSGQVKKMDPSDKS 154 (210)
T ss_pred hhhhheecceEEEeCCcchh
Confidence 236799999999876543
No 28
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=88.45 E-value=1.7 Score=34.43 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=41.7
Q ss_pred EEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEE
Q 028990 29 FQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYF 83 (200)
Q Consensus 29 ~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~ 83 (200)
..+.|.+.+ .|++.||.+.. .+ +.+.+.-...|.-+++|++++.+.+.+-+
T Consensus 3 ~IvtT~~~~-~~N~APiGi~~-~~--~~~~~~lf~gS~T~~Nl~~~~~~vvnit~ 53 (177)
T PF04289_consen 3 VIVTTKNED-EPNAAPIGIIR-DG--DELIIRLFKGSHTYENLKETGYFVVNITD 53 (177)
T ss_dssp EEEEEESTT--EEEEEEEEEE-SS--SEEEEEEETTSHHHHHHHHHSEEEEEE--
T ss_pred EEEEECCCC-CCcCCcEEEEE-EC--CEEEEEEcCCCchHHHHhhCCEEEEEECC
Confidence 468889888 89999999864 44 48999999999999999999999888755
No 29
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=78.71 E-value=28 Score=27.30 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCeEEEEeeCCCCCceEEEEEEEEEe---CCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC-----------------
Q 028990 26 SIYFQLATVGTNGRPSNRTVVFRGFQ---DNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE----------------- 85 (200)
Q Consensus 26 ~~~~~LATv~~dG~P~~R~v~~r~~~---~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~----------------- 85 (200)
..+++|.|.+.+| |.+-.+-+- ++ ++.+.|..+-.+..+-++.|..+..|-+.|..|.
T Consensus 22 ~pfa~Lvt~~~~~-~~athlP~~-l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISPsWYp~k~~~~~~ 99 (169)
T PF04299_consen 22 HPFATLVTNGDGG-PVATHLPFL-LDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISPSWYPTKAEHGKV 99 (169)
T ss_dssp S-EEEEEEEETTE-EEEEEEE-E-E-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-CCCS----STTS-
T ss_pred CCcEEEEEcCCCC-cceeeecEE-EEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECchhhcccCcCCCC
Confidence 4678999977544 888777553 33 3457899999999999999998888888885431
Q ss_pred ----CceEEEEEEEEEEEcCCC
Q 028990 86 ----SWDQFRINGRVDVIDGSN 103 (200)
Q Consensus 86 ----~~~qiri~G~a~~~~~~~ 103 (200)
...-|.++|+++++.|.+
T Consensus 100 VPTWNY~aVh~~G~~~~~~d~~ 121 (169)
T PF04299_consen 100 VPTWNYAAVHAYGTVRIIDDPD 121 (169)
T ss_dssp --EEEEEEEEEEEEEEE---HH
T ss_pred CCCcCEEEEEEEEEEEEEeCHH
Confidence 114589999999997654
No 30
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=77.73 E-value=0.4 Score=39.92 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEEC
Q 028990 25 HSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFT 84 (200)
Q Consensus 25 ~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~ 84 (200)
+....+|||++++|.|+.-.--+. +++. .+|+|-..-.+...++..||.|++.|.-+
T Consensus 93 ~~~sv~lat~~~~g~~~~syAp~~-~~~~--d~~iyis~~arh~~N~~~~p~vs~m~ied 149 (245)
T COG0748 93 EFDSVALATLRERGLPRASYAPLY-VDDG--DYYIYISEIARHARNLGFNPKVSVMFIED 149 (245)
T ss_pred ccchHHHhhhhhcCCcCCCcCceE-ecCC--ceEEEEehHHHHhhccCcCCchhhheecC
Confidence 457789999999999988776664 3443 69999999999999999999999888654
No 31
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=67.37 E-value=24 Score=28.68 Aligned_cols=79 Identities=10% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCCCeEEEEeeCCCCCceEEE--EEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC----------------
Q 028990 24 KHSIYFQLATVGTNGRPSNRT--VVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE---------------- 85 (200)
Q Consensus 24 ~~~~~~~LATv~~dG~P~~R~--v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~---------------- 85 (200)
++..+.+|.|.... .|-+-. +.+.+.+.+.+.|.++-.+.....+.+.....|=+.|..|.
T Consensus 20 r~~pfgtlvt~~~~-~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYISP~WY~sK~e~~~ 98 (209)
T COG2808 20 RAHPFGTLVTSGGG-GPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYISPAWYPSKRETPK 98 (209)
T ss_pred HhCCceEEEeccCC-ccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccCcccccccccCCC
Confidence 34578899999754 476644 55666554556788888888888888887666666664321
Q ss_pred -----CceEEEEEEEEEEEcCCC
Q 028990 86 -----SWDQFRINGRVDVIDGSN 103 (200)
Q Consensus 86 -----~~~qiri~G~a~~~~~~~ 103 (200)
...-|..+|++.++.|++
T Consensus 99 ~VPTWNY~aVHayG~~~~~~D~~ 121 (209)
T COG2808 99 VVPTWNYVAVHAYGTVRIIEDDE 121 (209)
T ss_pred cCCCcceEEEEEecceeeeccHH
Confidence 124588999999999875
No 32
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=54.19 E-value=30 Score=25.92 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=42.3
Q ss_pred CeEEEEeeCCCCCceEEEEE-EEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEEC
Q 028990 27 IYFQLATVGTNGRPSNRTVV-FRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFT 84 (200)
Q Consensus 27 ~~~~LATv~~dG~P~~R~v~-~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~ 84 (200)
.++.++| +++|.++.-++. +-.+..+...+.|.-+..+.-.+.|++.+...+.+...
T Consensus 7 pv~vvtt-~~~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~~ 64 (154)
T PF01613_consen 7 PVAVVTT-DEDGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLSE 64 (154)
T ss_dssp E-EEEEE-EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBG
T ss_pred CcEEEEE-CCCCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCHH
Confidence 4567778 789999987764 22233333578888999999999999999998888654
No 33
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=31.22 E-value=2.5e+02 Score=21.70 Aligned_cols=68 Identities=6% Similarity=-0.094 Sum_probs=48.9
Q ss_pred CeEEEEeeCCCCCceEEEEEE-EEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECCCceEEEEEEE
Q 028990 27 IYFQLATVGTNGRPSNRTVVF-RGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGR 95 (200)
Q Consensus 27 ~~~~LATv~~dG~P~~R~v~~-r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~~~~qiri~G~ 95 (200)
.+..++|.+++ .++.-|+.. -.+..+-..+.+.-+..+.-...|+++.+..+.+......+.+...|.
T Consensus 19 pv~~VTt~~~~-~~ng~~~s~~~~vs~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~~~~~~~~~~~~ 87 (176)
T COG1853 19 PVTVVTTKDGD-RRNGMTASSFTSVSLEPPLVLVCVNKSSDTWPNIEETGEFVVNVLSEDLQEAVAKTFA 87 (176)
T ss_pred ceEEEEcCCCC-cceeEEEEEEEeccCCCCEEEEEecCCcchhhhhhhcCEEEEEeCCHHHHHHHHHhhc
Confidence 56788888876 788888754 222333357888899999999999999999999977654444444433
No 34
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=30.34 E-value=74 Score=27.63 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=30.3
Q ss_pred eEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCC-CcchhhhhcC
Q 028990 28 YFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTR-SRKIEELKSC 74 (200)
Q Consensus 28 ~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~-S~K~~~i~~n 74 (200)
.-++|+|++|| .+|..-+|..+- .-++|-+.. +.+..-|..|
T Consensus 209 ~~~FASvgaDG--SvRmFDLR~leH---STIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 209 RDVFASVGADG--SVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cceEEEecCCC--cEEEEEeccccc---ceEEecCCCCCCcceeeccC
Confidence 35799999999 599999987764 455566665 6666666544
No 35
>COG2457 Uncharacterized conserved protein [Function unknown]
Probab=29.65 E-value=1.8e+02 Score=23.56 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=39.2
Q ss_pred EEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEEC
Q 028990 29 FQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFT 84 (200)
Q Consensus 29 ~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~ 84 (200)
+.+.|-+.+ |++.|+.+.. .+ +.+.|.--..|+-+.|+..+..++++..++
T Consensus 18 viviT~~~~--~N~aPIGIi~-~g--d~~~~kLy~GsrT~eNl~~~~~~~vnVv~D 68 (199)
T COG2457 18 VIVITRGEN--PNAAPIGIIV-KG--DKLKVKLYKGSRTYENLEKSNYLSVNVVDD 68 (199)
T ss_pred EEEEecCCC--CCcCceEEEE-eC--CEEEEEEecCcchHHHHhhcCeEEEEecCC
Confidence 455555544 4999998754 34 389999999999999999999988887654
No 36
>PF13014 KH_3: KH domain
Probab=20.75 E-value=1.3e+02 Score=17.32 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=24.3
Q ss_pred cCCCcchhhhhcCCcEEEEEEE---C-CCceEEEEEE
Q 028990 62 DTRSRKIEELKSCPFSEICWYF---T-ESWDQFRING 94 (200)
Q Consensus 62 d~~S~K~~~i~~np~v~l~~~~---~-~~~~qiri~G 94 (200)
...-..+++|++...|.+.|.. + ...+.|.|+|
T Consensus 7 G~~G~~I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 7 GKGGSTIKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred CCCChHHHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 4556778999999999988876 2 2356788876
Done!