BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028992
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 110/142 (77%)
Query: 4 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
++++FDR+LL E R+ AE Y +PLDADNLTRWG LLELSQF S+SD+K++I EAI+
Sbjct: 8 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67
Query: 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
KFEEAL+IDP K +W +GNA+TS FLT D +EAK +FD A++ FQ+AVDE+P N Y
Sbjct: 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127
Query: 124 QKSLEVSTKAPELHMELHKHGI 145
KSLE++ KAP+LH E +K G+
Sbjct: 128 LKSLEMTAKAPQLHAEAYKQGL 149
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 27/118 (22%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
+ Q D+D + E+ +K E DP +A+ G A + ++ EAI
Sbjct: 20 YKQGDYDEAI--EYYQKALEL----DPNNAEAWYNLGNAYYKQGDYD----------EAI 63
Query: 63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
+++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +P N
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPNN 110
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
+ Q D+D + E+ +K E DP +A+ G A + ++ EAI
Sbjct: 54 YKQGDYDEAI--EYYQKALEL----DPNNAEAWYNLGNAYYKQGDYD----------EAI 97
Query: 63 SKFEEALVIDPAKHYTLWSLGNAHTSCG 90
+++AL +DP +LGNA G
Sbjct: 98 EYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 11/63 (17%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 73
Query: 118 PTN 120
P N
Sbjct: 74 PNN 76
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 33/93 (35%)
Query: 70 VIDPAKHYTLW-SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-------- 120
+DP W +LGNA+ +GD+D+A E +Q+A++ +P N
Sbjct: 2 AMDPGNSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPNNAEAWYNLG 50
Query: 121 -------------ELYQKSLEVSTKAPELHMEL 140
E YQK+LE+ E L
Sbjct: 51 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
+ Q D+D + E+ +K E DP +A+ G A + ++ EAI
Sbjct: 20 YKQGDYDEAI--EYYQKALEL----DPNNAEAWYNLGNAYYKQGDYD----------EAI 63
Query: 63 SKFEEALVIDPAKHYTLWSLGNAHTSCG 90
+++AL +DP +LGNA G
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 32/104 (30%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 65
Query: 118 PTN---------------------ELYQKSLEVSTKAPELHMEL 140
P + E YQK+LE+ ++ E L
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
+ Q D+D + E+ +K E DP A+ G A + + +EAI
Sbjct: 46 YKQGDYDEAI--EYYQKALEL----DPRSAEAWYNLGNAYYKQGDY----------DEAI 89
Query: 63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
+++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +P
Sbjct: 90 EYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDP 134
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 32/82 (39%)
Query: 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN------------------- 120
++LGNA+ +GD+D+A E +Q+A++ +P +
Sbjct: 5 YNLGNAYYK-----------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 121 --ELYQKSLEVSTKAPELHMEL 140
E YQK+LE+ ++ E L
Sbjct: 54 AIEYYQKALELDPRSAEAWYNL 75
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 11/61 (18%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 67
Query: 118 P 118
P
Sbjct: 68 P 68
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 33/121 (27%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRW---GEALLELSQFESVSDSKKIIN 59
+ Q D+ + + E+ +K E LD +N + W G A + ++
Sbjct: 20 YKQGDYQKAI--EYYQKALE-------LDPNNASAWYNLGNAYYKQGDYQ---------- 60
Query: 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119
+AI +++AL +DP + GNA+ +GD+ KA E +Q+A++ +P
Sbjct: 61 KAIEYYQKALELDPNNAKAWYRRGNAYYK-----------QGDYQKAIEDYQKALELDPN 109
Query: 120 N 120
N
Sbjct: 110 N 110
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL + P ++LGNA+ +GD+D+A E +Q+A++
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELY 107
Query: 118 PTN 120
P N
Sbjct: 108 PNN 110
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 46 SQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105
S SV + + EA+ ++EA+ I P + +A+++ G ++ + +G
Sbjct: 47 SNLASVLQQQGKLQEALMHYKEAIRISP-------TFADAYSNMGNTLKEMQDVQG---- 95
Query: 106 ASECFQRAVDEEP 118
A +C+ RA+ P
Sbjct: 96 ALQCYTRAIQINP 108
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 65 FEEALVIDPAKHYTLWSLG------NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
+ EA D AK Y + AH G L E + + DKA EC++R+V+ P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY----ELEENTDKAVECYRRSVELNP 96
Query: 119 TNE 121
T +
Sbjct: 97 TQK 99
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 65 FEEALVIDPAKHYTLWSLG------NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
+ EA D AK Y + AH G L E + + DKA EC++R+V+ P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY----ELEENTDKAVECYRRSVELNP 96
Query: 119 TNE 121
T +
Sbjct: 97 TQK 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,370,204
Number of Sequences: 62578
Number of extensions: 174949
Number of successful extensions: 716
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 27
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)