Query 028992
Match_columns 200
No_of_seqs 175 out of 1362
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06552 TOM20_plant: Plant sp 100.0 2.1E-64 4.5E-69 411.1 9.5 184 8-191 1-186 (186)
2 KOG4626 O-linked N-acetylgluco 99.7 3.2E-16 7E-21 147.3 13.1 158 12-182 232-436 (966)
3 KOG4626 O-linked N-acetylgluco 99.7 3.6E-16 7.8E-21 147.0 9.7 121 9-150 195-336 (966)
4 PRK15359 type III secretion sy 99.6 6.8E-15 1.5E-19 116.0 13.1 96 8-124 34-129 (144)
5 TIGR00990 3a0801s09 mitochondr 99.6 1.1E-14 2.4E-19 137.9 16.5 157 10-188 343-522 (615)
6 KOG0553 TPR repeat-containing 99.6 4.9E-15 1.1E-19 129.2 10.9 101 9-130 92-192 (304)
7 PRK11189 lipoprotein NlpI; Pro 99.6 2.9E-14 6.3E-19 124.4 13.0 93 8-121 74-166 (296)
8 PRK15359 type III secretion sy 99.5 1.5E-13 3.2E-18 108.3 11.7 103 19-145 14-137 (144)
9 PRK12370 invasion protein regu 99.5 3.4E-13 7.4E-18 126.9 15.7 115 13-148 319-455 (553)
10 TIGR02552 LcrH_SycD type III s 99.5 3.7E-13 8E-18 102.5 11.6 100 9-129 28-127 (135)
11 PRK12370 invasion protein regu 99.5 1.8E-12 4E-17 122.0 15.7 123 13-147 276-419 (553)
12 PLN03088 SGT1, suppressor of 99.4 1.8E-12 4E-17 116.2 14.1 100 7-127 11-110 (356)
13 TIGR00990 3a0801s09 mitochondr 99.4 2.4E-12 5.1E-17 122.1 15.5 72 9-90 376-447 (615)
14 PRK09782 bacteriophage N4 rece 99.4 2.3E-12 4.9E-17 128.9 14.3 91 10-121 621-711 (987)
15 PF13414 TPR_11: TPR repeat; P 99.4 1.3E-12 2.8E-17 89.3 8.5 68 30-118 1-69 (69)
16 PRK10370 formate-dependent nit 99.4 5.3E-12 1.1E-16 104.7 13.8 92 11-121 52-144 (198)
17 PRK10370 formate-dependent nit 99.4 5E-12 1.1E-16 104.9 13.2 95 8-121 83-178 (198)
18 TIGR02521 type_IV_pilW type IV 99.4 1.7E-11 3.7E-16 97.7 15.3 121 8-149 41-184 (234)
19 PRK09782 bacteriophage N4 rece 99.4 8.1E-12 1.8E-16 124.9 15.1 114 9-144 587-721 (987)
20 PRK15363 pathogenicity island 99.4 1.1E-11 2.5E-16 99.8 12.1 90 10-120 47-136 (157)
21 COG3063 PilF Tfp pilus assembl 99.4 1.6E-11 3.5E-16 104.2 13.2 114 11-146 48-185 (250)
22 KOG1125 TPR repeat-containing 99.3 4E-12 8.6E-17 118.6 10.1 128 12-149 299-513 (579)
23 KOG1126 DNA-binding cell divis 99.3 2.9E-12 6.3E-17 120.9 8.1 115 12-147 435-570 (638)
24 PRK15174 Vi polysaccharide exp 99.3 4.6E-11 9.9E-16 114.9 16.3 120 9-145 223-363 (656)
25 PRK11189 lipoprotein NlpI; Pro 99.3 3.3E-11 7.2E-16 105.2 14.0 103 12-135 40-167 (296)
26 TIGR02552 LcrH_SycD type III s 99.3 4E-11 8.7E-16 91.2 12.0 82 19-121 4-85 (135)
27 TIGR02795 tol_pal_ybgF tol-pal 99.3 1E-10 2.2E-15 86.0 13.3 101 7-128 11-117 (119)
28 PF13432 TPR_16: Tetratricopep 99.3 1.1E-11 2.4E-16 84.0 7.1 65 36-121 1-65 (65)
29 cd00189 TPR Tetratricopeptide 99.3 7.4E-11 1.6E-15 79.6 10.7 91 8-119 10-100 (100)
30 TIGR02521 type_IV_pilW type IV 99.3 3.8E-10 8.3E-15 89.8 15.5 92 9-121 76-169 (234)
31 TIGR03302 OM_YfiO outer membra 99.2 2.6E-10 5.6E-15 94.8 14.2 108 7-127 42-155 (235)
32 PRK15179 Vi polysaccharide bio 99.2 1.9E-10 4.2E-15 111.5 14.9 112 9-141 97-229 (694)
33 KOG1155 Anaphase-promoting com 99.2 1.5E-10 3.3E-15 106.3 13.3 111 12-143 344-475 (559)
34 TIGR02917 PEP_TPR_lipo putativ 99.2 3.2E-10 6.8E-15 107.0 15.7 151 8-182 713-885 (899)
35 PRK11447 cellulose synthase su 99.2 2.6E-10 5.5E-15 115.7 15.7 116 9-145 280-430 (1157)
36 KOG1126 DNA-binding cell divis 99.2 4.5E-11 9.7E-16 113.0 9.4 116 11-147 468-604 (638)
37 TIGR02917 PEP_TPR_lipo putativ 99.2 3.1E-10 6.7E-15 107.0 15.1 118 9-148 680-818 (899)
38 PRK11447 cellulose synthase su 99.2 5E-10 1.1E-14 113.6 16.3 127 9-145 362-540 (1157)
39 PRK15174 Vi polysaccharide exp 99.2 4.4E-10 9.4E-15 108.2 14.6 112 9-141 53-185 (656)
40 KOG0547 Translocase of outer m 99.2 2.1E-10 4.5E-15 106.0 11.6 116 13-149 409-552 (606)
41 PRK02603 photosystem I assembl 99.2 5.1E-10 1.1E-14 89.9 12.2 103 8-120 45-153 (172)
42 CHL00033 ycf3 photosystem I as 99.2 5.2E-10 1.1E-14 89.3 11.5 103 9-121 46-154 (168)
43 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 1.4E-10 3E-15 106.7 8.9 70 27-117 70-142 (453)
44 PLN02789 farnesyltranstransfer 99.1 6.9E-10 1.5E-14 98.7 12.6 120 8-146 47-188 (320)
45 PRK11788 tetratricopeptide rep 99.1 1.5E-09 3.2E-14 95.9 14.2 130 8-149 117-297 (389)
46 PF12895 Apc3: Anaphase-promot 99.1 2E-10 4.4E-15 81.8 6.4 80 12-113 3-84 (84)
47 PRK10049 pgaA outer membrane p 99.1 3.3E-09 7.2E-14 103.6 16.1 90 10-121 61-150 (765)
48 PLN02789 farnesyltranstransfer 99.1 3.5E-09 7.6E-14 94.2 14.8 119 9-146 82-229 (320)
49 COG3063 PilF Tfp pilus assembl 99.1 9.2E-10 2E-14 93.6 10.0 96 8-124 79-176 (250)
50 KOG0547 Translocase of outer m 99.1 9.2E-10 2E-14 101.8 10.5 116 13-149 341-477 (606)
51 PF13429 TPR_15: Tetratricopep 99.1 6.1E-10 1.3E-14 95.4 8.3 120 8-148 120-262 (280)
52 PRK11788 tetratricopeptide rep 99.0 5.4E-09 1.2E-13 92.3 14.5 111 10-141 192-323 (389)
53 PF13429 TPR_15: Tetratricopep 99.0 3.2E-09 6.9E-14 91.0 12.4 92 9-121 157-248 (280)
54 PRK15363 pathogenicity island 99.0 1.7E-09 3.7E-14 87.2 10.0 81 20-121 22-103 (157)
55 KOG4162 Predicted calmodulin-b 99.0 1.6E-09 3.4E-14 104.1 11.1 97 6-121 692-788 (799)
56 KOG1125 TPR repeat-containing 99.0 4.9E-10 1.1E-14 104.8 7.1 89 11-120 443-531 (579)
57 KOG3060 Uncharacterized conser 99.0 6E-09 1.3E-13 89.9 13.1 113 8-141 96-232 (289)
58 PLN03088 SGT1, suppressor of 99.0 6.4E-09 1.4E-13 93.4 12.4 89 35-144 5-114 (356)
59 PRK10803 tol-pal system protei 99.0 1.1E-08 2.4E-13 88.7 13.4 96 12-128 157-258 (263)
60 PRK15179 Vi polysaccharide bio 99.0 1.2E-08 2.6E-13 99.0 14.8 106 22-148 76-202 (694)
61 KOG0553 TPR repeat-containing 99.0 5.1E-09 1.1E-13 91.8 10.9 78 57-145 96-194 (304)
62 KOG0548 Molecular co-chaperone 99.0 1E-08 2.2E-13 95.4 13.3 94 7-121 367-460 (539)
63 PF14559 TPR_19: Tetratricopep 99.0 1.9E-09 4.2E-14 73.1 6.4 59 58-127 7-65 (68)
64 KOG1155 Anaphase-promoting com 98.9 1.3E-08 2.9E-13 93.7 13.2 95 6-121 372-466 (559)
65 PF13371 TPR_9: Tetratricopept 98.9 5.6E-09 1.2E-13 71.7 8.1 69 39-128 2-70 (73)
66 PRK10049 pgaA outer membrane p 98.9 1.4E-08 2.9E-13 99.3 13.8 115 10-145 27-161 (765)
67 COG5010 TadD Flp pilus assembl 98.9 1.2E-08 2.6E-13 87.8 11.9 97 10-127 112-208 (257)
68 KOG0548 Molecular co-chaperone 98.9 7.4E-09 1.6E-13 96.3 11.1 122 5-147 331-473 (539)
69 PRK15331 chaperone protein Sic 98.9 1.5E-08 3.2E-13 82.3 11.3 98 2-121 31-138 (165)
70 KOG1173 Anaphase-promoting com 98.9 2.3E-08 5E-13 93.7 12.2 111 6-127 388-529 (611)
71 PF13432 TPR_16: Tetratricopep 98.9 6.7E-09 1.5E-13 70.1 6.3 59 8-76 7-65 (65)
72 PF13414 TPR_11: TPR repeat; P 98.9 8.3E-09 1.8E-13 70.3 6.6 57 7-73 12-69 (69)
73 PRK11906 transcriptional regul 98.9 2.1E-08 4.5E-13 92.6 11.1 90 11-121 317-406 (458)
74 COG4235 Cytochrome c biogenesi 98.9 4E-08 8.7E-13 86.1 12.3 90 14-121 138-227 (287)
75 COG4235 Cytochrome c biogenesi 98.8 9.5E-08 2.1E-12 83.7 14.3 101 9-127 167-267 (287)
76 cd00189 TPR Tetratricopeptide 98.8 3.7E-08 8.1E-13 66.1 9.0 67 34-121 2-68 (100)
77 CHL00033 ycf3 photosystem I as 98.8 8E-08 1.7E-12 76.6 12.1 87 14-121 15-106 (168)
78 PRK11906 transcriptional regul 98.8 5.2E-08 1.1E-12 90.0 11.9 96 14-121 274-372 (458)
79 TIGR02795 tol_pal_ybgF tol-pal 98.8 9.8E-08 2.1E-12 69.9 11.0 69 32-121 2-73 (119)
80 KOG0543 FKBP-type peptidyl-pro 98.8 4.7E-08 1E-12 88.7 11.0 117 7-144 217-356 (397)
81 TIGR03302 OM_YfiO outer membra 98.8 7.1E-08 1.5E-12 80.1 11.0 118 8-148 80-217 (235)
82 PF14559 TPR_19: Tetratricopep 98.8 2.4E-08 5.3E-13 67.6 6.7 64 11-84 4-67 (68)
83 PRK10153 DNA-binding transcrip 98.8 1.3E-07 2.9E-12 89.1 13.7 93 13-118 357-451 (517)
84 PRK02603 photosystem I assembl 98.7 1.2E-07 2.6E-12 76.1 10.8 74 27-121 30-106 (172)
85 PF13424 TPR_12: Tetratricopep 98.7 1.2E-08 2.5E-13 71.3 4.1 67 29-116 2-75 (78)
86 cd05804 StaR_like StaR_like; a 98.7 7.9E-08 1.7E-12 84.0 10.2 90 8-118 124-217 (355)
87 PRK14574 hmsH outer membrane p 98.7 1.7E-07 3.7E-12 92.7 13.5 126 10-146 46-215 (822)
88 KOG1129 TPR repeat-containing 98.7 2.1E-07 4.6E-12 83.2 11.8 142 8-173 233-401 (478)
89 COG5010 TadD Flp pilus assembl 98.7 3.9E-07 8.4E-12 78.6 12.7 74 27-121 95-168 (257)
90 PRK10153 DNA-binding transcrip 98.7 1.8E-07 3.9E-12 88.2 11.4 89 14-124 400-490 (517)
91 PF13371 TPR_9: Tetratricopept 98.7 1.4E-07 3E-12 64.7 7.7 64 10-83 7-70 (73)
92 PF12688 TPR_5: Tetratrico pep 98.6 8.7E-07 1.9E-11 68.5 12.5 100 8-130 11-116 (120)
93 cd05804 StaR_like StaR_like; a 98.6 7.4E-07 1.6E-11 77.8 12.8 97 11-119 56-180 (355)
94 KOG1173 Anaphase-promoting com 98.6 1E-06 2.2E-11 82.9 12.7 137 10-158 324-512 (611)
95 KOG3060 Uncharacterized conser 98.5 1.7E-06 3.6E-11 75.0 12.0 89 15-121 137-225 (289)
96 TIGR00540 hemY_coli hemY prote 98.5 4.6E-06 1E-10 75.8 15.4 113 11-134 166-315 (409)
97 KOG2076 RNA polymerase III tra 98.5 1.7E-06 3.6E-11 84.7 12.9 96 12-118 153-272 (895)
98 COG4783 Putative Zn-dependent 98.5 3.3E-06 7.3E-11 78.2 14.2 119 10-149 318-440 (484)
99 KOG2002 TPR-containing nuclear 98.5 2E-06 4.4E-11 84.8 12.7 134 7-147 208-389 (1018)
100 PRK14574 hmsH outer membrane p 98.5 3.1E-06 6.8E-11 83.8 14.0 103 21-144 23-146 (822)
101 KOG1156 N-terminal acetyltrans 98.4 1.3E-06 2.9E-11 83.1 10.6 89 12-121 21-109 (700)
102 PF13431 TPR_17: Tetratricopep 98.4 1.9E-07 4.1E-12 56.5 3.3 34 64-108 1-34 (34)
103 KOG1129 TPR repeat-containing 98.4 4.6E-07 1E-11 81.1 6.9 116 9-145 301-440 (478)
104 PRK10747 putative protoheme IX 98.4 2.9E-06 6.3E-11 77.0 11.8 89 10-122 275-363 (398)
105 KOG0624 dsRNA-activated protei 98.4 2.2E-06 4.7E-11 77.3 10.4 88 13-121 53-140 (504)
106 PRK10747 putative protoheme IX 98.4 1E-05 2.3E-10 73.4 15.1 130 9-149 164-343 (398)
107 PF00515 TPR_1: Tetratricopept 98.4 6E-07 1.3E-11 53.2 4.7 34 76-120 1-34 (34)
108 PF09976 TPR_21: Tetratricopep 98.4 2E-06 4.3E-11 67.2 8.9 83 10-114 60-145 (145)
109 KOG4234 TPR repeat-containing 98.4 6.3E-06 1.4E-10 69.6 12.3 102 11-133 108-215 (271)
110 PF06552 TOM20_plant: Plant sp 98.4 1.1E-06 2.5E-11 72.3 7.7 78 7-84 44-122 (186)
111 KOG1127 TPR repeat-containing 98.4 2.9E-06 6.3E-11 84.1 11.2 97 7-121 11-108 (1238)
112 COG4785 NlpI Lipoprotein NlpI, 98.4 1.8E-06 4E-11 73.6 8.6 106 8-134 75-185 (297)
113 KOG2002 TPR-containing nuclear 98.4 4.3E-06 9.3E-11 82.6 12.2 124 13-147 251-427 (1018)
114 KOG4642 Chaperone-dependent E3 98.4 1.7E-06 3.6E-11 74.4 8.1 84 12-116 24-107 (284)
115 KOG2003 TPR repeat-containing 98.4 9.8E-07 2.1E-11 81.9 7.1 142 13-188 471-633 (840)
116 KOG4648 Uncharacterized conser 98.4 1.6E-06 3.4E-11 78.2 8.1 102 6-128 105-206 (536)
117 PRK10803 tol-pal system protei 98.3 6.8E-06 1.5E-10 71.4 11.6 85 31-146 141-229 (263)
118 PF13428 TPR_14: Tetratricopep 98.3 1E-06 2.2E-11 55.8 4.7 43 32-84 1-43 (44)
119 PF07719 TPR_2: Tetratricopept 98.3 1.6E-06 3.4E-11 51.0 5.1 34 76-120 1-34 (34)
120 KOG1174 Anaphase-promoting com 98.3 6E-06 1.3E-10 75.8 10.7 93 15-129 421-513 (564)
121 KOG1174 Anaphase-promoting com 98.3 1E-05 2.2E-10 74.3 12.1 127 12-149 314-486 (564)
122 TIGR00540 hemY_coli hemY prote 98.3 3E-05 6.5E-10 70.5 15.2 119 9-148 129-277 (409)
123 KOG0550 Molecular chaperone (D 98.3 2.1E-06 4.6E-11 78.5 7.6 113 11-144 182-331 (486)
124 PRK10866 outer membrane biogen 98.3 2E-05 4.3E-10 67.5 12.9 126 11-146 45-187 (243)
125 KOG0624 dsRNA-activated protei 98.3 2.2E-06 4.8E-11 77.2 7.2 102 6-128 277-382 (504)
126 KOG1128 Uncharacterized conser 98.2 6.3E-06 1.4E-10 79.5 9.6 89 12-121 499-587 (777)
127 KOG2076 RNA polymerase III tra 98.2 1.8E-05 3.9E-10 77.7 12.4 93 7-115 216-308 (895)
128 KOG0550 Molecular chaperone (D 98.2 5.3E-06 1.1E-10 75.9 8.1 94 5-119 256-353 (486)
129 PRK14720 transcript cleavage f 98.2 8.8E-06 1.9E-10 81.0 10.3 102 8-121 41-150 (906)
130 KOG1840 Kinesin light chain [C 98.2 1.3E-05 2.7E-10 75.7 10.2 90 7-117 208-313 (508)
131 KOG4162 Predicted calmodulin-b 98.2 1.9E-05 4.1E-10 76.6 11.6 106 10-149 662-769 (799)
132 KOG0543 FKBP-type peptidyl-pro 98.2 1.2E-05 2.6E-10 73.2 9.6 91 10-120 269-359 (397)
133 PF13512 TPR_18: Tetratricopep 98.1 7.2E-05 1.6E-09 59.5 11.8 107 10-126 22-138 (142)
134 KOG3364 Membrane protein invol 98.1 0.00013 2.8E-09 57.9 12.9 104 1-122 1-106 (149)
135 KOG1127 TPR repeat-containing 98.1 8.4E-06 1.8E-10 80.9 7.7 98 13-121 507-630 (1238)
136 PF12688 TPR_5: Tetratrico pep 98.1 3.5E-05 7.6E-10 59.5 9.6 69 32-121 1-72 (120)
137 PRK10866 outer membrane biogen 98.1 3.1E-05 6.8E-10 66.3 10.2 77 30-127 30-114 (243)
138 PF00515 TPR_1: Tetratricopept 98.0 7E-06 1.5E-10 48.6 3.8 34 32-75 1-34 (34)
139 COG4783 Putative Zn-dependent 98.0 4.9E-05 1.1E-09 70.6 10.7 98 10-117 352-455 (484)
140 PF07719 TPR_2: Tetratricopept 98.0 1.5E-05 3.2E-10 46.8 4.5 34 32-75 1-34 (34)
141 PF12895 Apc3: Anaphase-promot 98.0 1E-05 2.2E-10 57.3 4.2 54 56-121 3-58 (84)
142 PF13428 TPR_14: Tetratricopep 98.0 2.7E-05 5.8E-10 49.1 5.6 41 76-127 1-41 (44)
143 PF13525 YfiO: Outer membrane 98.0 0.00011 2.3E-09 60.9 10.8 104 10-126 17-129 (203)
144 PRK14720 transcript cleavage f 97.9 0.00011 2.3E-09 73.5 12.4 110 17-148 101-217 (906)
145 PF04733 Coatomer_E: Coatomer 97.9 1.8E-05 3.9E-10 69.5 6.4 91 10-121 143-235 (290)
146 PRK15331 chaperone protein Sic 97.9 0.0002 4.3E-09 58.4 11.9 77 24-121 29-105 (165)
147 COG1729 Uncharacterized protei 97.9 0.00024 5.1E-09 61.8 13.1 97 10-127 153-255 (262)
148 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0002 4.4E-09 65.7 13.3 86 12-121 183-268 (395)
149 PF13181 TPR_8: Tetratricopept 97.9 1.8E-05 4E-10 46.5 4.3 33 77-120 2-34 (34)
150 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00011 2.4E-09 67.3 10.4 77 14-111 216-292 (395)
151 KOG4555 TPR repeat-containing 97.9 0.00028 6E-09 56.3 11.1 97 13-131 58-158 (175)
152 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 3.4E-05 7.4E-10 71.5 6.9 55 8-72 85-142 (453)
153 PF13431 TPR_17: Tetratricopep 97.9 1.7E-05 3.7E-10 47.9 3.3 28 21-48 2-29 (34)
154 KOG0376 Serine-threonine phosp 97.8 2.4E-05 5.1E-10 72.6 4.9 96 12-128 18-113 (476)
155 KOG1308 Hsp70-interacting prot 97.8 1.1E-05 2.5E-10 72.2 2.4 89 12-121 128-216 (377)
156 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00016 3.5E-09 61.9 8.9 59 52-121 75-133 (297)
157 KOG1128 Uncharacterized conser 97.8 0.00015 3.3E-09 70.2 9.6 114 16-141 442-594 (777)
158 PF09976 TPR_21: Tetratricopep 97.8 0.00078 1.7E-08 52.5 12.1 80 12-112 25-110 (145)
159 PF13512 TPR_18: Tetratricopep 97.7 0.00036 7.7E-09 55.6 9.9 77 31-128 9-93 (142)
160 PF13525 YfiO: Outer membrane 97.7 0.00025 5.3E-09 58.7 9.4 70 31-121 4-76 (203)
161 COG2956 Predicted N-acetylgluc 97.7 0.00029 6.3E-09 63.1 9.8 95 11-121 154-248 (389)
162 KOG2003 TPR repeat-containing 97.7 0.00031 6.6E-09 65.7 10.3 89 12-121 504-592 (840)
163 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0032 7E-08 47.0 14.2 120 7-147 68-215 (291)
164 COG2956 Predicted N-acetylgluc 97.6 0.00094 2E-08 59.9 12.2 96 13-129 195-295 (389)
165 KOG4648 Uncharacterized conser 97.6 9.8E-05 2.1E-09 66.9 5.8 86 36-142 101-207 (536)
166 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0013 2.9E-08 49.1 11.1 91 8-119 140-234 (291)
167 COG1729 Uncharacterized protei 97.6 0.00068 1.5E-08 59.0 10.6 87 31-148 140-229 (262)
168 KOG1156 N-terminal acetyltrans 97.5 0.00042 9.1E-09 66.5 9.1 92 9-121 52-143 (700)
169 KOG4555 TPR repeat-containing 97.5 0.00048 1E-08 54.9 7.8 67 34-121 45-111 (175)
170 PF04733 Coatomer_E: Coatomer 97.5 0.00056 1.2E-08 60.1 8.8 96 13-129 182-278 (290)
171 PF13176 TPR_7: Tetratricopept 97.5 0.00018 3.9E-09 43.6 4.0 32 78-120 1-34 (36)
172 KOG1840 Kinesin light chain [C 97.5 0.00043 9.3E-09 65.4 8.3 86 10-116 253-354 (508)
173 KOG0545 Aryl-hydrocarbon recep 97.5 0.0013 2.8E-08 57.3 10.3 95 6-121 186-298 (329)
174 KOG0495 HAT repeat protein [RN 97.4 0.0016 3.4E-08 63.1 11.2 36 13-48 666-701 (913)
175 KOG4234 TPR repeat-containing 97.4 0.0013 2.8E-08 55.8 9.5 89 32-141 95-209 (271)
176 KOG4507 Uncharacterized conser 97.4 0.00062 1.3E-08 65.1 8.3 96 13-129 622-718 (886)
177 smart00028 TPR Tetratricopepti 97.4 0.00024 5.3E-09 38.7 3.5 33 77-120 2-34 (34)
178 PF12569 NARP1: NMDA receptor- 97.4 0.0017 3.6E-08 61.6 10.7 89 8-117 204-292 (517)
179 PF13174 TPR_6: Tetratricopept 97.4 0.00035 7.6E-09 40.3 4.0 33 77-120 1-33 (33)
180 COG4700 Uncharacterized protei 97.4 0.0063 1.4E-07 51.3 12.8 146 15-184 73-245 (251)
181 KOG0495 HAT repeat protein [RN 97.4 0.0044 9.6E-08 60.1 13.4 120 7-147 694-830 (913)
182 PF13181 TPR_8: Tetratricopept 97.3 0.00031 6.6E-09 41.2 3.7 34 32-75 1-34 (34)
183 KOG2053 Mitochondrial inherita 97.3 0.0018 3.9E-08 64.1 10.4 89 12-121 23-111 (932)
184 PF13424 TPR_12: Tetratricopep 97.3 0.00037 8E-09 48.2 4.0 55 8-72 15-76 (78)
185 PF04184 ST7: ST7 protein; In 97.3 0.0061 1.3E-07 57.4 12.8 93 36-139 263-385 (539)
186 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0034 7.3E-08 56.5 10.4 94 6-120 89-186 (390)
187 PF05843 Suf: Suppressor of fo 97.2 0.0046 1E-07 53.8 11.2 94 8-121 11-104 (280)
188 PF03704 BTAD: Bacterial trans 97.2 0.0029 6.3E-08 48.9 8.9 60 34-114 64-123 (146)
189 COG4700 Uncharacterized protei 97.2 0.0077 1.7E-07 50.8 11.6 94 7-121 98-194 (251)
190 KOG3785 Uncharacterized conser 97.2 0.0019 4.1E-08 58.9 8.1 101 10-121 69-219 (557)
191 COG3071 HemY Uncharacterized e 97.1 0.0038 8.2E-08 57.0 9.7 81 13-115 309-389 (400)
192 PF12569 NARP1: NMDA receptor- 97.0 0.0044 9.6E-08 58.8 10.0 78 31-129 3-80 (517)
193 PF14561 TPR_20: Tetratricopep 97.0 0.0063 1.4E-07 44.6 8.6 52 59-121 5-56 (90)
194 KOG4642 Chaperone-dependent E3 97.0 0.002 4.4E-08 55.7 6.2 92 56-158 24-122 (284)
195 smart00028 TPR Tetratricopepti 96.9 0.0015 3.2E-08 35.4 3.6 33 33-75 2-34 (34)
196 PF08424 NRDE-2: NRDE-2, neces 96.9 0.02 4.4E-07 50.8 12.6 92 19-121 6-99 (321)
197 KOG1130 Predicted G-alpha GTPa 96.9 0.0017 3.7E-08 60.2 5.6 88 11-119 208-307 (639)
198 PLN03077 Protein ECB2; Provisi 96.9 0.014 3.1E-07 57.7 12.2 123 8-147 534-704 (857)
199 PF13281 DUF4071: Domain of un 96.8 0.022 4.8E-07 52.0 12.3 100 13-121 156-260 (374)
200 PLN03081 pentatricopeptide (PP 96.8 0.0074 1.6E-07 58.4 9.6 87 8-117 472-558 (697)
201 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0078 1.7E-07 40.0 6.2 37 77-124 2-38 (53)
202 PF14561 TPR_20: Tetratricopep 96.7 0.016 3.4E-07 42.5 8.4 63 18-90 8-72 (90)
203 KOG3081 Vesicle coat complex C 96.7 0.071 1.5E-06 46.9 13.5 94 9-121 148-241 (299)
204 KOG3824 Huntingtin interacting 96.7 0.0039 8.4E-08 56.0 5.9 69 7-85 125-193 (472)
205 PF14938 SNAP: Soluble NSF att 96.6 0.0023 5E-08 55.4 3.8 47 59-116 91-144 (282)
206 PLN03081 pentatricopeptide (PP 96.5 0.029 6.3E-07 54.3 11.6 123 8-145 370-539 (697)
207 PF13174 TPR_6: Tetratricopept 96.5 0.0051 1.1E-07 35.3 3.8 33 33-75 1-33 (33)
208 COG3071 HemY Uncharacterized e 96.5 0.03 6.6E-07 51.2 10.4 94 7-124 272-365 (400)
209 PRK10941 hypothetical protein; 96.4 0.02 4.3E-07 50.1 8.8 65 36-121 185-249 (269)
210 PF10300 DUF3808: Protein of u 96.4 0.019 4.1E-07 53.7 9.2 89 12-121 247-339 (468)
211 KOG1130 Predicted G-alpha GTPa 96.4 0.0087 1.9E-07 55.6 6.7 85 11-116 248-344 (639)
212 COG4105 ComL DNA uptake lipopr 96.4 0.033 7.2E-07 48.4 9.7 76 31-127 33-116 (254)
213 PF14938 SNAP: Soluble NSF att 96.3 0.023 5.1E-07 49.2 8.7 89 12-121 129-230 (282)
214 PLN03077 Protein ECB2; Provisi 96.3 0.035 7.5E-07 55.0 10.6 91 8-121 635-729 (857)
215 KOG2376 Signal recognition par 96.3 0.046 9.9E-07 52.5 10.8 96 11-120 25-143 (652)
216 PF13374 TPR_10: Tetratricopep 96.3 0.012 2.6E-07 35.3 4.7 29 77-116 3-31 (42)
217 KOG2396 HAT (Half-A-TPR) repea 96.2 0.073 1.6E-06 50.3 11.3 84 18-121 91-174 (568)
218 KOG3081 Vesicle coat complex C 96.1 0.072 1.6E-06 46.9 10.6 92 14-125 189-280 (299)
219 PF13176 TPR_7: Tetratricopept 96.1 0.0078 1.7E-07 36.2 3.3 29 34-72 1-29 (36)
220 COG4105 ComL DNA uptake lipopr 96.1 0.16 3.4E-06 44.2 12.2 98 11-121 47-150 (254)
221 KOG3824 Huntingtin interacting 96.0 0.015 3.3E-07 52.3 6.0 53 58-121 132-184 (472)
222 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.03 6.5E-07 37.2 6.0 41 33-83 2-42 (53)
223 KOG4340 Uncharacterized conser 95.9 0.017 3.7E-07 51.8 5.9 89 11-120 114-215 (459)
224 KOG4340 Uncharacterized conser 95.9 0.043 9.4E-07 49.3 8.0 67 10-86 22-88 (459)
225 KOG0376 Serine-threonine phosp 95.8 0.019 4.2E-07 53.6 5.8 72 59-141 21-113 (476)
226 KOG2376 Signal recognition par 95.7 0.15 3.3E-06 49.0 11.5 93 10-116 91-204 (652)
227 COG3118 Thioredoxin domain-con 95.7 0.27 5.8E-06 43.7 12.2 101 10-121 146-270 (304)
228 COG4976 Predicted methyltransf 95.7 0.03 6.5E-07 48.4 6.1 52 59-121 12-63 (287)
229 PLN03218 maturation of RBCL 1; 95.6 0.22 4.8E-06 51.2 13.2 40 9-48 590-630 (1060)
230 PRK04841 transcriptional regul 95.6 0.073 1.6E-06 52.5 9.5 85 11-116 465-560 (903)
231 KOG3785 Uncharacterized conser 95.6 0.085 1.9E-06 48.4 9.0 114 6-144 30-151 (557)
232 PF04781 DUF627: Protein of un 95.5 0.13 2.8E-06 39.4 8.3 98 8-116 6-107 (111)
233 PLN03218 maturation of RBCL 1; 95.4 0.27 5.9E-06 50.6 13.1 91 11-123 555-652 (1060)
234 KOG0545 Aryl-hydrocarbon recep 95.4 0.066 1.4E-06 46.9 7.4 93 32-145 178-292 (329)
235 PRK10941 hypothetical protein; 95.4 0.085 1.8E-06 46.1 8.2 68 8-85 191-258 (269)
236 KOG1941 Acetylcholine receptor 95.3 0.054 1.2E-06 49.7 6.8 93 8-121 93-196 (518)
237 PF13281 DUF4071: Domain of un 95.3 0.16 3.4E-06 46.5 9.7 78 11-90 195-273 (374)
238 PF05843 Suf: Suppressor of fo 95.2 0.25 5.4E-06 42.9 10.4 95 12-127 50-147 (280)
239 COG4976 Predicted methyltransf 95.2 0.03 6.4E-07 48.5 4.4 97 12-121 9-109 (287)
240 PF09986 DUF2225: Uncharacteri 95.1 0.14 3E-06 43.2 8.3 99 7-119 86-197 (214)
241 KOG1310 WD40 repeat protein [G 95.0 0.14 3.1E-06 48.9 8.9 105 14-136 390-494 (758)
242 PF12968 DUF3856: Domain of Un 95.0 0.26 5.7E-06 38.7 8.9 91 12-116 23-129 (144)
243 PF13374 TPR_10: Tetratricopep 94.9 0.051 1.1E-06 32.4 3.9 30 32-71 2-31 (42)
244 PRK04841 transcriptional regul 94.7 0.2 4.4E-06 49.4 9.6 67 35-122 694-766 (903)
245 PF04781 DUF627: Protein of un 94.6 0.17 3.7E-06 38.7 6.9 73 39-121 3-78 (111)
246 KOG2053 Mitochondrial inherita 94.6 0.25 5.4E-06 49.5 9.6 72 8-90 53-124 (932)
247 COG3118 Thioredoxin domain-con 94.4 0.43 9.4E-06 42.4 9.9 96 32-149 134-251 (304)
248 PF03704 BTAD: Bacterial trans 94.4 0.21 4.6E-06 38.3 7.2 51 9-69 73-123 (146)
249 KOG1941 Acetylcholine receptor 94.3 0.24 5.2E-06 45.6 8.3 90 7-117 171-276 (518)
250 PF08424 NRDE-2: NRDE-2, neces 94.3 0.88 1.9E-05 40.4 11.9 66 8-83 41-106 (321)
251 KOG1070 rRNA processing protei 93.9 0.56 1.2E-05 49.3 10.7 73 8-90 1540-1614(1710)
252 COG3914 Spy Predicted O-linked 93.8 0.44 9.6E-06 45.9 9.2 88 13-121 82-176 (620)
253 KOG4814 Uncharacterized conser 93.7 1.1 2.3E-05 44.0 11.8 116 9-145 365-486 (872)
254 PF10373 EST1_DNA_bind: Est1 D 93.3 0.28 6.1E-06 41.3 6.6 50 61-121 1-50 (278)
255 PF09613 HrpB1_HrpK: Bacterial 93.2 0.91 2E-05 36.9 9.0 68 13-90 25-92 (160)
256 KOG1586 Protein required for f 93.1 0.92 2E-05 39.5 9.3 98 13-121 29-148 (288)
257 KOG1915 Cell cycle control pro 92.9 1.5 3.2E-05 41.8 11.1 77 57-145 452-551 (677)
258 KOG2796 Uncharacterized conser 92.9 0.47 1E-05 42.1 7.4 70 31-121 251-320 (366)
259 PF04190 DUF410: Protein of un 92.8 0.85 1.8E-05 39.4 8.9 133 3-147 62-241 (260)
260 PF07720 TPR_3: Tetratricopept 92.6 0.46 1E-05 28.9 5.0 34 76-120 1-36 (36)
261 PF12862 Apc5: Anaphase-promot 92.6 0.46 9.9E-06 34.5 6.0 51 58-119 14-73 (94)
262 COG3914 Spy Predicted O-linked 92.3 1.4 3.1E-05 42.5 10.3 114 17-150 50-192 (620)
263 PF04184 ST7: ST7 protein; In 92.2 1.6 3.5E-05 41.5 10.4 106 8-125 269-384 (539)
264 KOG2796 Uncharacterized conser 92.0 0.56 1.2E-05 41.6 6.8 66 13-88 267-335 (366)
265 COG5191 Uncharacterized conser 91.9 0.29 6.4E-06 44.2 5.0 75 26-121 101-176 (435)
266 KOG1308 Hsp70-interacting prot 91.8 0.074 1.6E-06 48.2 1.2 53 58-121 130-182 (377)
267 PF02259 FAT: FAT domain; Int 91.4 0.79 1.7E-05 39.7 7.2 86 34-119 247-341 (352)
268 KOG0551 Hsp90 co-chaperone CNS 91.4 0.63 1.4E-05 42.3 6.5 75 26-121 74-153 (390)
269 PRK13184 pknD serine/threonine 91.3 1.5 3.2E-05 44.8 9.8 99 8-121 485-586 (932)
270 PF10516 SHNi-TPR: SHNi-TPR; 91.2 0.34 7.4E-06 30.0 3.3 30 32-71 1-30 (38)
271 COG2976 Uncharacterized protei 91.1 2.6 5.5E-05 35.6 9.5 92 13-129 104-200 (207)
272 KOG1915 Cell cycle control pro 91.1 1.8 3.9E-05 41.3 9.4 90 11-121 86-175 (677)
273 KOG2396 HAT (Half-A-TPR) repea 91.0 0.98 2.1E-05 43.0 7.7 61 13-82 120-180 (568)
274 KOG2471 TPR repeat-containing 90.9 0.2 4.4E-06 47.6 3.1 67 34-121 285-369 (696)
275 PF07079 DUF1347: Protein of u 90.7 1.3 2.8E-05 41.8 8.1 60 57-131 477-540 (549)
276 KOG2610 Uncharacterized conser 90.6 1.8 3.9E-05 39.7 8.7 88 13-121 118-209 (491)
277 KOG1070 rRNA processing protei 90.5 3 6.6E-05 44.1 11.2 97 14-131 1580-1682(1710)
278 COG2912 Uncharacterized conser 90.3 1.4 2.9E-05 38.8 7.5 53 58-121 197-249 (269)
279 KOG0529 Protein geranylgeranyl 90.1 3.7 8.1E-05 38.1 10.5 107 12-127 43-154 (421)
280 PF10516 SHNi-TPR: SHNi-TPR; 89.9 0.57 1.2E-05 29.0 3.5 30 77-117 2-31 (38)
281 COG0790 FOG: TPR repeat, SEL1 89.9 5.5 0.00012 33.9 11.0 96 15-121 172-271 (292)
282 PF07721 TPR_4: Tetratricopept 89.8 0.44 9.5E-06 26.5 2.7 25 77-112 2-26 (26)
283 PF10373 EST1_DNA_bind: Est1 D 89.8 1.3 2.7E-05 37.4 6.8 62 17-88 1-62 (278)
284 PF09613 HrpB1_HrpK: Bacterial 89.8 4.4 9.5E-05 32.9 9.6 52 59-121 27-78 (160)
285 KOG2610 Uncharacterized conser 89.5 2.3 4.9E-05 39.1 8.4 83 10-114 187-274 (491)
286 KOG1550 Extracellular protein 88.9 3 6.4E-05 39.9 9.4 98 15-127 229-333 (552)
287 COG5191 Uncharacterized conser 88.9 0.58 1.2E-05 42.4 4.2 63 9-81 118-181 (435)
288 PF02259 FAT: FAT domain; Int 88.7 6.4 0.00014 33.9 10.7 103 9-121 157-292 (352)
289 COG2912 Uncharacterized conser 88.7 2.4 5.2E-05 37.2 7.8 68 9-86 192-259 (269)
290 KOG2047 mRNA splicing factor [ 88.5 5.3 0.00012 39.4 10.6 40 9-48 488-527 (835)
291 COG0790 FOG: TPR repeat, SEL1 88.5 10 0.00023 32.2 11.7 92 11-119 54-145 (292)
292 PF11207 DUF2989: Protein of u 88.5 3.3 7.2E-05 34.9 8.3 55 31-107 140-198 (203)
293 PF12862 Apc5: Anaphase-promot 88.1 1.3 2.8E-05 32.0 5.0 58 10-77 10-76 (94)
294 PF04910 Tcf25: Transcriptiona 87.6 14 0.0003 33.5 12.4 86 22-121 30-138 (360)
295 COG3629 DnrI DNA-binding trans 87.6 3.2 6.9E-05 36.6 8.0 64 32-116 153-216 (280)
296 PTZ00441 sporozoite surface pr 87.5 0.24 5.2E-06 47.7 1.0 35 160-194 501-535 (576)
297 KOG2047 mRNA splicing factor [ 86.5 16 0.00035 36.1 12.6 116 13-141 41-179 (835)
298 TIGR02561 HrpB1_HrpK type III 86.1 5.4 0.00012 32.2 7.8 70 11-90 23-92 (153)
299 KOG1585 Protein required for f 86.0 11 0.00025 33.1 10.3 63 59-130 88-153 (308)
300 KOG0530 Protein farnesyltransf 85.9 4.5 9.8E-05 35.9 7.9 86 15-120 60-146 (318)
301 smart00386 HAT HAT (Half-A-TPR 85.8 2.1 4.5E-05 23.6 4.1 29 13-41 2-30 (33)
302 KOG0546 HSP90 co-chaperone CPR 84.9 0.82 1.8E-05 41.6 3.0 75 36-131 279-353 (372)
303 COG3898 Uncharacterized membra 84.9 31 0.00067 32.5 13.1 104 7-121 163-297 (531)
304 KOG2471 TPR repeat-containing 84.9 3.8 8.2E-05 39.3 7.4 48 30-87 333-380 (696)
305 KOG4507 Uncharacterized conser 84.8 1.3 2.9E-05 43.1 4.5 102 9-121 189-317 (886)
306 PF09797 NatB_MDM20: N-acetylt 84.5 13 0.00027 33.4 10.5 47 55-112 196-242 (365)
307 PF10300 DUF3808: Protein of u 84.4 19 0.00041 33.8 11.9 53 55-118 246-298 (468)
308 KOG1550 Extracellular protein 84.1 8.5 0.00018 36.8 9.6 98 13-127 264-368 (552)
309 PF10579 Rapsyn_N: Rapsyn N-te 83.5 8.1 0.00018 27.9 7.0 47 59-116 23-72 (80)
310 KOG3364 Membrane protein invol 83.3 3.9 8.5E-05 32.7 5.8 54 15-78 52-107 (149)
311 COG3947 Response regulator con 82.7 4.6 0.0001 36.3 6.7 58 34-112 281-338 (361)
312 COG4455 ImpE Protein of avirul 82.4 5.3 0.00012 34.6 6.7 59 58-127 17-79 (273)
313 PF09986 DUF2225: Uncharacteri 81.7 5.1 0.00011 33.7 6.4 57 5-71 132-194 (214)
314 smart00299 CLH Clathrin heavy 81.7 15 0.00033 27.7 8.6 39 8-46 17-55 (140)
315 PF07721 TPR_4: Tetratricopept 81.6 1.5 3.3E-05 24.2 2.2 25 33-67 2-26 (26)
316 KOG1914 mRNA cleavage and poly 81.0 8.4 0.00018 37.3 8.1 76 22-119 10-85 (656)
317 smart00671 SEL1 Sel1-like repe 80.3 3.7 8.1E-05 23.4 3.7 34 77-117 2-35 (36)
318 PF11846 DUF3366: Domain of un 80.2 14 0.00031 29.9 8.4 61 54-127 123-183 (193)
319 smart00386 HAT HAT (Half-A-TPR 80.2 5.1 0.00011 21.8 4.2 27 58-84 3-29 (33)
320 KOG0529 Protein geranylgeranyl 80.1 24 0.00051 33.0 10.5 100 7-121 84-183 (421)
321 KOG1258 mRNA processing protei 79.9 62 0.0013 31.5 13.7 130 9-149 308-490 (577)
322 PF07720 TPR_3: Tetratricopept 79.7 5.7 0.00012 24.1 4.5 34 32-75 1-36 (36)
323 PF10602 RPN7: 26S proteasome 79.2 23 0.00051 28.7 9.4 86 8-114 46-140 (177)
324 PRK15180 Vi polysaccharide bio 78.9 14 0.00031 35.6 8.8 107 15-121 306-425 (831)
325 KOG3807 Predicted membrane pro 78.1 49 0.0011 30.7 11.7 88 10-120 196-308 (556)
326 PF12968 DUF3856: Domain of Un 77.9 11 0.00024 29.8 6.6 54 8-71 65-129 (144)
327 PF04212 MIT: MIT (microtubule 77.2 4.1 9E-05 27.6 3.7 15 58-72 2-16 (69)
328 PF14863 Alkyl_sulf_dimr: Alky 76.3 8.8 0.00019 30.4 5.9 51 30-90 68-118 (141)
329 TIGR02561 HrpB1_HrpK type III 76.0 27 0.00058 28.3 8.5 52 59-121 27-78 (153)
330 cd02677 MIT_SNX15 MIT: domain 75.8 4.5 9.7E-05 28.6 3.6 17 58-74 3-19 (75)
331 PF02184 HAT: HAT (Half-A-TPR) 75.6 5.2 0.00011 23.9 3.3 27 13-40 2-28 (32)
332 PF08238 Sel1: Sel1 repeat; I 75.4 4.5 9.8E-05 23.5 3.2 36 76-117 1-38 (39)
333 PF04053 Coatomer_WDAD: Coatom 75.1 13 0.00028 34.8 7.5 33 73-116 344-376 (443)
334 KOG1586 Protein required for f 75.1 7.3 0.00016 34.1 5.4 55 59-125 51-111 (288)
335 KOG4814 Uncharacterized conser 75.0 27 0.00059 34.7 9.7 74 58-142 370-453 (872)
336 PF11846 DUF3366: Domain of un 73.3 20 0.00043 28.9 7.5 53 14-77 127-179 (193)
337 PF10255 Paf67: RNA polymerase 72.8 6.4 0.00014 36.5 4.9 57 37-115 127-192 (404)
338 PF12753 Nro1: Nuclear pore co 72.7 6.5 0.00014 36.4 4.8 71 54-128 330-401 (404)
339 cd02682 MIT_AAA_Arch MIT: doma 71.4 16 0.00034 26.0 5.6 19 59-77 30-48 (75)
340 KOG2300 Uncharacterized conser 71.4 42 0.00092 32.3 9.9 82 57-148 24-137 (629)
341 cd02683 MIT_1 MIT: domain cont 71.3 9.3 0.0002 27.0 4.4 45 58-121 3-47 (77)
342 KOG1310 WD40 repeat protein [G 71.2 4.6 0.0001 39.1 3.6 53 15-77 428-480 (758)
343 cd02656 MIT MIT: domain contai 71.1 8.5 0.00018 26.5 4.2 16 58-73 3-18 (75)
344 cd02681 MIT_calpain7_1 MIT: do 70.7 9.6 0.00021 27.0 4.4 14 59-72 4-17 (76)
345 KOG3617 WD40 and TPR repeat-co 69.7 30 0.00065 35.5 8.9 67 29-116 909-996 (1416)
346 KOG1585 Protein required for f 68.4 16 0.00036 32.2 6.1 70 32-116 31-100 (308)
347 TIGR03504 FimV_Cterm FimV C-te 68.1 20 0.00044 22.7 5.0 35 80-126 3-37 (44)
348 PF08631 SPO22: Meiosis protei 68.1 78 0.0017 27.2 12.7 92 12-121 7-121 (278)
349 PHA02537 M terminase endonucle 68.1 30 0.00066 29.7 7.6 102 12-121 97-212 (230)
350 PF15015 NYD-SP12_N: Spermatog 65.5 38 0.00082 32.1 8.2 60 34-114 230-289 (569)
351 smart00745 MIT Microtubule Int 65.4 14 0.00029 25.5 4.2 43 58-119 5-47 (77)
352 cd02680 MIT_calpain7_2 MIT: do 64.2 15 0.00033 26.0 4.3 15 102-116 21-35 (75)
353 PF10345 Cohesin_load: Cohesin 64.0 55 0.0012 31.5 9.5 102 9-121 319-446 (608)
354 PF00244 14-3-3: 14-3-3 protei 63.9 19 0.00041 30.7 5.6 69 37-116 121-198 (236)
355 TIGR03504 FimV_Cterm FimV C-te 63.6 12 0.00027 23.7 3.4 26 35-70 2-27 (44)
356 PF12753 Nro1: Nuclear pore co 63.3 10 0.00022 35.2 4.0 58 12-71 332-391 (404)
357 PF12854 PPR_1: PPR repeat 61.3 21 0.00046 20.8 4.0 26 76-112 7-32 (34)
358 KOG4014 Uncharacterized conser 60.6 66 0.0014 27.4 8.1 99 13-123 50-148 (248)
359 COG3629 DnrI DNA-binding trans 60.5 36 0.00078 30.1 6.9 54 8-71 163-216 (280)
360 KOG0276 Vesicle coat complex C 60.0 27 0.00059 34.4 6.4 82 6-117 615-696 (794)
361 PF10579 Rapsyn_N: Rapsyn N-te 59.7 44 0.00095 24.1 6.0 54 13-72 21-77 (80)
362 PF04910 Tcf25: Transcriptiona 59.1 28 0.0006 31.6 6.1 44 67-114 31-74 (360)
363 PF08631 SPO22: Meiosis protei 57.3 1.3E+02 0.0027 25.9 10.3 62 13-81 51-126 (278)
364 smart00101 14_3_3 14-3-3 homol 57.1 39 0.00084 29.2 6.4 71 36-116 122-200 (244)
365 cd02678 MIT_VPS4 MIT: domain c 56.9 34 0.00073 23.7 5.0 15 58-72 3-17 (75)
366 PF10602 RPN7: 26S proteasome 56.5 1.1E+02 0.0023 24.8 10.1 82 10-116 15-102 (177)
367 KOG3617 WD40 and TPR repeat-co 56.5 50 0.0011 34.0 7.7 50 56-116 872-941 (1416)
368 PF10345 Cohesin_load: Cohesin 56.4 98 0.0021 29.8 9.7 83 13-117 36-129 (608)
369 PF10953 DUF2754: Protein of u 56.3 1.9 4.2E-05 29.4 -1.3 17 171-187 33-49 (70)
370 COG4455 ImpE Protein of avirul 56.2 34 0.00073 29.8 5.8 61 7-77 10-70 (273)
371 PF07739 TipAS: TipAS antibiot 55.7 42 0.00092 24.5 5.7 24 65-88 67-90 (118)
372 cd02679 MIT_spastin MIT: domai 55.6 13 0.00027 26.7 2.7 19 101-119 3-21 (79)
373 cd02682 MIT_AAA_Arch MIT: doma 55.5 23 0.0005 25.1 4.0 14 59-72 4-17 (75)
374 PRK15490 Vi polysaccharide bio 54.5 76 0.0016 30.9 8.5 70 9-90 19-88 (578)
375 PF09205 DUF1955: Domain of un 54.3 73 0.0016 25.7 7.0 41 65-116 109-149 (161)
376 PF04053 Coatomer_WDAD: Coatom 54.2 69 0.0015 30.0 8.0 72 27-127 342-413 (443)
377 PF01535 PPR: PPR repeat; Int 53.4 25 0.00055 18.8 3.3 27 79-116 3-29 (31)
378 PF14852 Fis1_TPR_N: Fis1 N-te 52.5 17 0.00036 22.0 2.5 35 32-73 1-35 (35)
379 PF11044 TMEMspv1-c74-12: Plec 52.2 15 0.00033 23.7 2.3 13 178-190 12-24 (49)
380 KOG0687 26S proteasome regulat 52.2 52 0.0011 30.2 6.5 118 7-139 80-206 (393)
381 cd02679 MIT_spastin MIT: domai 52.0 35 0.00075 24.4 4.5 16 58-73 5-20 (79)
382 PF01239 PPTA: Protein prenylt 51.2 43 0.00094 18.8 4.4 28 61-88 2-29 (31)
383 KOG0985 Vesicle coat protein c 51.1 1.2E+02 0.0026 32.1 9.4 62 29-116 1101-1162(1666)
384 COG3898 Uncharacterized membra 51.0 1.7E+02 0.0037 27.7 9.8 101 14-125 245-367 (531)
385 TIGR00756 PPR pentatricopeptid 51.0 39 0.00085 18.2 3.9 27 79-116 3-29 (35)
386 KOG1464 COP9 signalosome, subu 49.5 47 0.001 30.0 5.8 46 58-114 43-92 (440)
387 PF13041 PPR_2: PPR repeat fam 49.3 61 0.0013 19.9 5.8 40 77-127 4-45 (50)
388 PF05053 Menin: Menin; InterP 47.4 65 0.0014 31.4 6.7 71 59-143 296-378 (618)
389 PF08311 Mad3_BUB1_I: Mad3/BUB 47.3 37 0.00081 26.0 4.4 45 59-114 80-126 (126)
390 KOG3783 Uncharacterized conser 47.3 79 0.0017 30.5 7.3 65 36-121 453-525 (546)
391 PF09797 NatB_MDM20: N-acetylt 46.7 1.6E+02 0.0034 26.3 8.9 96 11-120 196-292 (365)
392 KOG2300 Uncharacterized conser 46.5 1.5E+02 0.0032 28.8 8.8 86 12-118 289-398 (629)
393 KOG2908 26S proteasome regulat 46.4 77 0.0017 29.1 6.7 78 8-88 85-168 (380)
394 PF11601 Shal-type: Shal-type 45.6 4.5 9.8E-05 23.3 -0.8 25 173-197 3-28 (28)
395 smart00299 CLH Clathrin heavy 45.5 74 0.0016 23.8 5.8 32 58-89 23-54 (140)
396 KOG2581 26S proteasome regulat 45.3 48 0.0011 31.2 5.4 36 75-121 246-281 (493)
397 KOG0890 Protein kinase of the 44.8 1.8E+02 0.0039 33.1 10.1 92 30-144 1668-1799(2382)
398 PF10952 DUF2753: Protein of u 44.7 97 0.0021 24.5 6.2 61 35-116 4-79 (140)
399 cd02684 MIT_2 MIT: domain cont 44.5 63 0.0014 22.5 4.8 15 58-72 3-17 (75)
400 KOG2041 WD40 repeat protein [G 43.2 99 0.0021 31.4 7.3 72 9-113 807-878 (1189)
401 PF02064 MAS20: MAS20 protein 42.8 48 0.001 25.6 4.3 30 81-121 68-97 (121)
402 COG3947 Response regulator con 42.2 53 0.0011 29.8 4.9 38 11-48 292-329 (361)
403 KOG0128 RNA-binding protein SA 42.0 2.8E+02 0.0062 28.4 10.4 95 10-116 125-219 (881)
404 KOG3783 Uncharacterized conser 41.5 86 0.0019 30.3 6.5 86 15-121 250-337 (546)
405 KOG0128 RNA-binding protein SA 41.2 1.2E+02 0.0026 30.9 7.7 91 6-114 87-177 (881)
406 KOG0546 HSP90 co-chaperone CPR 40.9 19 0.00042 33.0 2.1 66 13-88 290-355 (372)
407 KOG1258 mRNA processing protei 40.4 3.7E+02 0.0079 26.4 12.6 121 14-147 61-198 (577)
408 PF11587 Prion_bPrPp: Major pr 39.8 16 0.00035 21.3 0.9 22 170-192 3-26 (29)
409 PF11817 Foie-gras_1: Foie gra 38.6 70 0.0015 27.1 5.1 47 59-116 155-207 (247)
410 PF15297 CKAP2_C: Cytoskeleton 37.9 1E+02 0.0023 28.2 6.3 50 59-119 120-172 (353)
411 COG2976 Uncharacterized protei 37.5 90 0.002 26.4 5.4 35 33-77 160-194 (207)
412 KOG1811 Predicted Zn2+-binding 37.2 57 0.0012 32.4 4.7 47 29-85 584-631 (1141)
413 PRK13184 pknD serine/threonine 35.8 2.8E+02 0.006 28.8 9.5 92 13-121 534-625 (932)
414 KOG3807 Predicted membrane pro 35.4 88 0.0019 29.0 5.4 45 59-116 201-245 (556)
415 PF11817 Foie-gras_1: Foie gra 35.2 2.6E+02 0.0056 23.6 8.1 58 33-111 179-242 (247)
416 PF13226 DUF4034: Domain of un 34.5 3.2E+02 0.007 24.1 10.2 62 60-121 61-133 (277)
417 PF01350 Flavi_NS4A: Flaviviru 34.3 1.8E+02 0.0038 23.3 6.4 44 102-145 16-59 (144)
418 COG4259 Uncharacterized protei 34.2 1.9E+02 0.0041 22.2 6.2 45 73-128 69-113 (121)
419 PF13226 DUF4034: Domain of un 34.2 2.5E+02 0.0055 24.7 8.0 74 17-90 62-147 (277)
420 KOG4449 Translocase of outer m 33.4 33 0.00071 22.7 1.7 18 175-196 25-42 (53)
421 PF04190 DUF410: Protein of un 33.3 2.3E+02 0.0049 24.4 7.5 71 29-113 46-116 (260)
422 PF13812 PPR_3: Pentatricopept 32.8 88 0.0019 17.0 4.3 28 78-116 3-30 (34)
423 COG4941 Predicted RNA polymera 31.0 1.9E+02 0.0042 26.7 6.8 35 76-121 365-399 (415)
424 PF11460 DUF3007: Protein of u 30.9 37 0.00081 25.7 1.9 12 177-188 40-51 (104)
425 PF06936 Selenoprotein_S: Sele 30.8 16 0.00036 30.4 0.0 19 173-191 35-53 (190)
426 KOG0530 Protein farnesyltransf 30.4 4E+02 0.0087 23.9 12.3 105 14-128 94-231 (318)
427 PF12309 KBP_C: KIF-1 binding 29.5 3.4E+02 0.0074 24.8 8.3 63 56-120 263-342 (371)
428 PF11169 DUF2956: Protein of u 29.2 42 0.00091 25.3 1.9 17 171-190 82-98 (103)
429 PHA02537 M terminase endonucle 29.2 1.1E+02 0.0023 26.3 4.7 22 54-75 190-211 (230)
430 COG2909 MalT ATP-dependent tra 28.3 3.5E+02 0.0077 27.8 8.7 64 37-121 463-531 (894)
431 PF09670 Cas_Cas02710: CRISPR- 27.5 4.4E+02 0.0095 24.0 8.7 60 36-116 135-198 (379)
432 PF14863 Alkyl_sulf_dimr: Alky 27.4 1.3E+02 0.0029 23.6 4.7 37 12-48 84-120 (141)
433 COG4941 Predicted RNA polymera 26.6 1.6E+02 0.0036 27.2 5.6 42 34-85 367-408 (415)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 26.1 2.6E+02 0.0056 21.2 6.0 44 16-69 81-126 (126)
435 PF09205 DUF1955: Domain of un 25.3 2.3E+02 0.0049 22.9 5.5 38 23-70 111-148 (161)
436 TIGR02498 type_III_ssaH type I 25.0 2.3E+02 0.0049 20.4 5.0 46 56-112 20-65 (79)
437 PRK15326 type III secretion sy 24.9 2.7E+02 0.0058 20.1 6.2 35 12-46 21-55 (80)
438 PF08928 DUF1910: Domain of un 24.8 2.9E+02 0.0062 20.3 7.9 38 51-88 66-103 (117)
439 TIGR00985 3a0801s04tom mitocho 24.5 2.5E+02 0.0055 22.5 5.8 41 28-78 79-127 (148)
440 PF00244 14-3-3: 14-3-3 protei 24.4 3.5E+02 0.0076 22.9 7.0 52 8-69 136-196 (236)
441 KOG1839 Uncharacterized protei 23.6 1.8E+02 0.0039 31.0 5.9 88 9-117 984-1087(1236)
442 cd00922 Cyt_c_Oxidase_IV Cytoc 23.3 1.1E+02 0.0023 24.0 3.4 30 168-198 73-104 (136)
443 PF11732 Thoc2: Transcription- 23.2 47 0.001 23.7 1.2 17 163-179 34-50 (77)
444 PF09670 Cas_Cas02710: CRISPR- 23.2 5.7E+02 0.012 23.2 10.7 52 12-71 145-198 (379)
445 KOG2709 Uncharacterized conser 23.1 1.3E+02 0.0028 28.6 4.3 49 5-71 3-51 (560)
446 PF07079 DUF1347: Protein of u 22.6 3.5E+02 0.0076 26.1 7.1 44 13-67 477-520 (549)
447 PF02038 ATP1G1_PLM_MAT8: ATP1 22.4 2.1E+02 0.0045 18.8 4.0 17 166-182 4-25 (50)
448 KOG2422 Uncharacterized conser 22.2 7.8E+02 0.017 24.4 10.3 116 14-141 254-411 (665)
449 PF04431 Pec_lyase_N: Pectate 22.0 73 0.0016 21.4 1.9 32 12-43 11-42 (56)
450 PF02064 MAS20: MAS20 protein 21.8 1.8E+02 0.0039 22.5 4.3 34 36-79 67-100 (121)
451 KOG4521 Nuclear pore complex, 21.4 2.6E+02 0.0055 30.0 6.3 103 30-146 918-1033(1480)
452 PRK11619 lytic murein transgly 21.1 5.1E+02 0.011 25.5 8.2 31 74-115 344-374 (644)
453 KOG0889 Histone acetyltransfer 21.0 2.3E+02 0.005 33.5 6.3 63 8-72 2822-2884(3550)
454 PF12583 TPPII_N: Tripeptidyl 20.8 1E+02 0.0023 24.4 2.8 44 101-144 73-120 (139)
455 KOG4563 Cell cycle-regulated h 20.7 1.5E+02 0.0031 27.6 4.1 46 35-90 44-97 (400)
456 COG4646 DNA methylase [Transcr 20.4 1.5E+02 0.0032 28.6 4.2 64 56-133 264-328 (637)
457 PRK15356 type III secretion sy 20.2 3.3E+02 0.0072 19.4 5.6 44 57-111 9-52 (75)
458 KOG4279 Serine/threonine prote 20.1 3E+02 0.0066 28.3 6.4 74 15-90 260-334 (1226)
No 1
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=100.00 E-value=2.1e-64 Score=411.11 Aligned_cols=184 Identities=68% Similarity=1.067 Sum_probs=127.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
||||++||+||+.++.+|..||+|++++++||++|+++++|+++.+++.|+++||++|++||.|||++++++||||++|+
T Consensus 1 ~~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 1 FERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccccCCCCCcc--hhhhhccc
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSAS--SAQSSKKK 165 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 165 (200)
++|||+||..+|++.|++|..||++|++++|+|+.|+++|++..|+|++|.++++++++||+++++++++ .+.+|+||
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~~q~~~~~~~~~~~~~~~k~kk 160 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLGQQAMGGASSSSSSAKSSKKKK 160 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS----------------------
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccCCCCCCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999876653333 38899999
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhh
Q 028992 166 SSDLKYDIFGWAILAVGIVAWVGMAN 191 (200)
Q Consensus 166 ~~~~~y~~~g~~~l~~~~~~~~~~~~ 191 (200)
+|||||||+||||||+|||+||||||
T Consensus 161 ~sd~~ydv~gwvil~~givawv~~ak 186 (186)
T PF06552_consen 161 SSDFKYDVFGWVILAVGIVAWVGMAK 186 (186)
T ss_dssp --------------------------
T ss_pred ccchhhhhcchHHHHHHHHHHHhhcC
Confidence 99999999999999999999999997
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=3.2e-16 Score=147.27 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=135.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKFEE 67 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~~le~ 67 (200)
+..-.|+..|++|+.++|+.+++++|||++|-++.+|..... -.|.++-||.+|++
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 455678899999999999999999999999999888865321 22668999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHH
Q 028992 68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKS 126 (200)
Q Consensus 68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kA 126 (200)
||+++|+.++++.|||+++...| +..+|..||.+|+.+.|+++ .|+++
T Consensus 312 al~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999988 99999999999999999997 99999
Q ss_pred HHhCCCChHHHHHHHHHHHhccccCCCCCcch--hhhhcccccchhhhhhhHHHHHHH
Q 028992 127 LEVSTKAPELHMELHKHGINQQTLGGGSSASS--AQSSKKKSSDLKYDIFGWAILAVG 182 (200)
Q Consensus 127 le~~~k~~e~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~~~ 182 (200)
|++.|...++|.||+.++-.|+-. .+++..+ +.+.++...|. |..+|-+.=-.|
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl-~~Ai~~YkealrI~P~fAda-~~NmGnt~ke~g 436 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNL-DDAIMCYKEALRIKPTFADA-LSNMGNTYKEMG 436 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccH-HHHHHHHHHHHhcCchHHHH-HHhcchHHHHhh
Confidence 999999999999999999866654 5577777 57777888887 777776665555
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=3.6e-16 Score=146.96 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=110.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.-+++.++|...|.+|++.+|..+-+|.+||.++...|+. .+||.+|++|+++||+.+++|+|||++|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei----------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI----------WLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH----------HHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 4567889999999999999999999999999999888776 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.+ .||.|+.||++|+.+.|+++ .|+++|++.|..|++|.||++++-..
T Consensus 265 ~~-----------~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 265 AR-----------IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred Hh-----------cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 88 99999999999999999997 89999999999999999999988766
Q ss_pred ccc
Q 028992 148 QTL 150 (200)
Q Consensus 148 ~~~ 150 (200)
+.+
T Consensus 334 G~V 336 (966)
T KOG4626|consen 334 GSV 336 (966)
T ss_pred cch
Confidence 544
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=6.8e-15 Score=115.96 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=89.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
.-.++.|++|++.+++++..+|.+++++.++|.++..+|++ ++|+..|++|++++|+++++++++|.++.
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY----------TTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
..| ++++|+.+|++|++++|++..|.
T Consensus 104 ~~g-----------~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 104 MMG-----------EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCCChHHH
Confidence 999 99999999999999999987555
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=1.1e-14 Score=137.92 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=132.0
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
.++.+++|+..++++++++|+++..+.++|.++..+|++ ++|+..|+++++++|+++++++++|.++...
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP----------DKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999998888 9999999999999999999999999999998
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
| ++++|+.+|+++++++|++. .|+++++..|+.++++..++..+..++
T Consensus 413 g-----------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 413 G-----------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred C-----------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 8 99999999999999999985 778888999999999999999998665
Q ss_pred ccCCCCCcch--hhhhcccccchhhhhhhHHHHHHHHHHHHH
Q 028992 149 TLGGGSSASS--AQSSKKKSSDLKYDIFGWAILAVGIVAWVG 188 (200)
Q Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~~~~~~~~~ 188 (200)
-. ..+...+ .....+++...++.+..|+..+..+..|.|
T Consensus 482 ~~-~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 482 KF-DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred CH-HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 32 1233333 233445566677778888777766666643
No 6
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=4.9e-15 Score=129.25 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=95.9
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
=+-+.|++|+..|.+|++++|+|+-.+.|.+-+|.++|++ ++||.-++.||.|||....+|--||.+|+.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~----------~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY----------EDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch----------HHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 3445899999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhC
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS 130 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~ 130 (200)
+| +|++|++.|+|||+++|+|+.|+..|++.
T Consensus 162 ~g-----------k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 162 LG-----------KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cC-----------cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99 99999999999999999999999888653
No 7
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=2.9e-14 Score=124.39 Aligned_cols=93 Identities=24% Similarity=0.339 Sum_probs=89.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+++++.+++|+..++++++++|+++++++++|.++..+|++ ++|++.|++|++++|++..+++++|.++.
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++++|+++|+++++++|++.
T Consensus 144 ~~g-----------~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 144 YGG-----------RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 988 99999999999999999986
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1.5e-13 Score=108.31 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=92.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992 19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98 (200)
Q Consensus 19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~ 98 (200)
..++++++++|++ ++.+|.++...|++ ++|+..|++++.++|.++++|.++|.++...|
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-------- 72 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDY----------SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK-------- 72 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------
Confidence 4678889999885 67889999999998 99999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 99 AKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 99 a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
++++|+.+|++|++++|++. .|+++++++|+.++.+.+.+.+..
T Consensus 73 ---~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 73 ---EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred ---hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999986 677888888888888877776654
No 9
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=3.4e-13 Score=126.92 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.+++|+..++++++++|++++++..+|.++...|++ ++|+..|++|++++|+++.+|+++|.++...|
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G-- 386 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY----------IVGSLLFKQANLLSPISADIKYYYGWNLFMAG-- 386 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--
Confidence 479999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhC-CCChHHHHHHHHHHHhcc
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVS-TKAPELHMELHKHGINQQ 148 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~-~k~~e~~~~l~~~~~~~~ 148 (200)
++++|+.+|++|++++|++. .++++++.+ |..|.+|..++..+..++
T Consensus 387 ---------~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 387 ---------QLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred ---------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 99999999999999999975 455666554 788999999998886544
No 10
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=3.7e-13 Score=102.52 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=92.3
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+.+.+++|++.+++++..+|.+++.+.++|.++..++++ ++|+..|+++++++|++++.++++|.+|..
T Consensus 28 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 28 YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY----------EEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~ 129 (200)
.| ++++|+.+|+++++++|++..+......
T Consensus 98 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 98 LG-----------EPESALKALDLAIEICGENPEYSELKER 127 (135)
T ss_pred cC-----------CHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88 9999999999999999999876655543
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=1.8e-12 Score=121.98 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.+++|++.++++++++|+++.++..+|.++..+++... .+..+.+++|+..+++|+++||+++.+|..+|.++...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-- 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-- 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--
Confidence 46899999999999999999999999999887765422 123455799999999999999999999999999999988
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
++++|+.+|++|++++|++. .|+++++++|..+..+..++..++.+
T Consensus 353 ---------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 353 ---------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999997 88899999999998877766555443
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.44 E-value=1.8e-12 Score=116.24 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=92.5
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+.-+.+.|++|++.|+++++++|+++.+++++|.++..+|++ ++|+..+++|++++|+++.+|+.+|.+|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~----------~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF----------TEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 344567999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
..+| +|++|+.+|+++++++|++...+..+
T Consensus 81 ~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 81 MKLE-----------EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999 99999999999999999998544433
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=2.4e-12 Score=122.09 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
..++.+++|+..++++++.+|+++++++++|.++..+|++ ++|+..|+++++++|++..++.++|.++..
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF----------AQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777666 555555555555555555555555555555
Q ss_pred cC
Q 028992 89 CG 90 (200)
Q Consensus 89 ~G 90 (200)
+|
T Consensus 446 ~g 447 (615)
T TIGR00990 446 EG 447 (615)
T ss_pred CC
Confidence 55
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.42 E-value=2.3e-12 Score=128.85 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=55.1
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+++.+++|++.++++++++|++++++.++|.+|...|++ ++|+..|++|++++|+++++++++|.++..+
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 444555555555555555555555555555555555555 6666666666666666666666666666665
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
| ++++|+.+|++|++++|++.
T Consensus 691 G-----------d~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 691 D-----------DMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred C-----------CHHHHHHHHHHHHhcCCCCc
Confidence 5 66666666666666666664
No 15
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.41 E-value=1.3e-12 Score=89.33 Aligned_cols=68 Identities=28% Similarity=0.518 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcC-HHHHHH
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGD-FDKASE 108 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~-~d~A~~ 108 (200)
++++.|.++|.+++..+++ ++|+..|++|+++||+++.+|+++|.+|..+| + +++|++
T Consensus 1 e~a~~~~~~g~~~~~~~~~----------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-----------~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDY----------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-----------KDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-----------THHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----------ccHHHHHH
Confidence 4789999999999999998 99999999999999999999999999999976 5 999999
Q ss_pred HHHHHHHhCC
Q 028992 109 CFQRAVDEEP 118 (200)
Q Consensus 109 ~fqkAl~l~P 118 (200)
+|++|++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999998
No 16
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=5.3e-12 Score=104.72 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=79.6
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hhc
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH-TSC 89 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~-~~~ 89 (200)
....++++..++++++.+|+|++.|..+|.++..++++ ++|+.+|++|++++|++++++.++|.++ ...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~----------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY----------DNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 44568888999999999999999999999999999888 9999999999999999999999999985 565
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
| ...+++|..+++++++++|++.
T Consensus 122 g---------~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 122 G---------QHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred C---------CCCcHHHHHHHHHHHHhCCCCh
Confidence 6 1126999999999999999885
No 17
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=5e-12 Score=104.86 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=86.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al-~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+-+++.+++|+..++++++++|++++++..+|.++ ...|++ +.++|+..|+++++++|+++.++++||.++
T Consensus 83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 83 YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 45678999999999999999999999999999987 555652 129999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..+| +|++|+.+|+++++++|.+.
T Consensus 155 ~~~g-----------~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 155 FMQA-----------DYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHcC-----------CHHHHHHHHHHHHhhCCCCc
Confidence 9999 99999999999999998876
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.7e-11 Score=97.69 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=108.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.++++++.+|++..++..+|.++...|++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL----------EKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCC--CCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEP--TNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P--~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
..| ++++|+.+|+++++..+ ... .+.++++..|+.++.+..++..+
T Consensus 111 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 111 QQG-----------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred Hcc-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 988 99999999999998542 221 77888899999999999999888
Q ss_pred Hhccc
Q 028992 145 INQQT 149 (200)
Q Consensus 145 ~~~~~ 149 (200)
..++.
T Consensus 180 ~~~~~ 184 (234)
T TIGR02521 180 YLRGQ 184 (234)
T ss_pred HHcCC
Confidence 76543
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=8.1e-12 Score=124.91 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=103.7
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+++.+++|+..++++++++|+ ++.+.++|.++.++|++ ++|+..|+++++++|+++.++.++|.++..
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~----------deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV----------PAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999996 99999999999999888 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
.| ++++|+.+|++|++++|++. .|++++++.|........++.+.
T Consensus 656 ~G-----------~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 656 SG-----------DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 88 99999999999999999997 78899999999988887777554
No 20
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=1.1e-11 Score=99.78 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=85.0
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
..+.+++|.+.++-+...||.+++.|++||.++..++++ ++||.+|.+|+.++|+++..++++|.||+..
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~----------~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW----------GEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 347899999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
| +.++|.++|+.|+..--++
T Consensus 117 G-----------~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 117 D-----------NVCYAIKALKAVVRICGEV 136 (157)
T ss_pred C-----------CHHHHHHHHHHHHHHhccC
Confidence 9 9999999999999886333
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1.6e-11 Score=104.21 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=104.9
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
-+.+..|++.++++++.||++..+|..++.+|..+|+. +-|-+.|++|+.++|++.+++.|.|--++.+|
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------DLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------hhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 35788999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
+|++|..+|++|+. +|.+. .|+++|+++|+.|....++.+....
T Consensus 118 -----------~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 118 -----------RPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred -----------ChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 99999999999995 56654 8899999999999999999876653
No 22
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4e-12 Score=118.62 Aligned_cols=128 Identities=24% Similarity=0.364 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+-.-+|.-.+|.++..||.++++|-.||.+..+.++- ..||..|++|+++||++-+++..|+..|+..|.
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E----------~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENE----------QNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch----------HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 3577888999999999999999999999999987776 899999999999999999999999999988771
Q ss_pred --------------------c----------------------------------c-----CChHHh-------hcCHHH
Q 028992 92 --------------------L----------------------------------T-----ADLSEA-------KGDFDK 105 (200)
Q Consensus 92 --------------------l----------------------------------~-----~~~~~a-------~~~~d~ 105 (200)
+ . ||..-+ .++||+
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 0 0 222222 238999
Q ss_pred HHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 106 A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
|++||+.||..+|+|. .|++||++.|.....++|||.-.+.++.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 9999999999999997 9999999999999999999987776665
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.9e-12 Score=120.90 Aligned_cols=115 Identities=23% Similarity=0.305 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+.++.|++.+++|+.+||+++=+++.+|-=+.....| +.|..+|+.||.+||.+-.|||.||.+|++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~----------d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe- 503 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF----------DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE- 503 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH----------HhHHHHHHhhhcCCchhhHHHHhhhhheeccc-
Confidence 3567777777777778887777777777777776666 88888888888888889999999999998877
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.++.|.-+|++|+++||.|- .|++|+-++|+.|-..++-++.+++-
T Consensus 504 ----------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 504 ----------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred ----------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 88888888888888888886 77788888888888888888777643
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.33 E-value=4.6e-11 Score=114.89 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=95.2
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+++.+++|++.++++++.+|+++.+++++|.++...|++.. -..+|+..|+++++++|+++.++.++|.++..
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e------A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE------AKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999888810 00137888888888888888888888888888
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
+| ++++|+.+|+++++++|++. .|+++++.+|..+..+..++..+.
T Consensus 297 ~g-----------~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 297 TG-----------QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 88 88888888888888888876 566677777777766666665554
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=3.3e-11 Score=105.17 Aligned_cols=103 Identities=22% Similarity=0.168 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHhhCC---C-CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDP---L-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P---~-d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
...|.++..+.+.+...| . .++.++.+|.++..+|++ ++|+..|++|++++|+++++|+++|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR----------ALARNDFSQALALRPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788888888886444 3 367799999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE 135 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e 135 (200)
..| ++++|+.+|+++++++|++. .++++++++|+.+.
T Consensus 110 ~~g-----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 110 QAG-----------NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999 99999999999999999997 67788899999884
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=4e-11 Score=91.22 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=77.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992 19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98 (200)
Q Consensus 19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~ 98 (200)
+.+++++..+|++....+.+|.+++..+++ ++|++.|++++.++|+++.+++++|.++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-------- 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY----------DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK-------- 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------
Confidence 467889999999999999999999999988 99999999999999999999999999999988
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCH
Q 028992 99 AKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 99 a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++++|+.+|+++++.+|++.
T Consensus 66 ---~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 66 ---EYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred ---HHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999988764
No 27
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.30 E-value=1e-10 Score=85.97 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=92.2
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLW 80 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~ 80 (200)
.+.+.+.+++|++.++.++..+|++ +++++.+|.++...+++ ++|+..|++++..+|++ +.+++
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 11 LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3567789999999999999999987 68999999999999998 99999999999999986 68899
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
.+|.++...| ++++|+.+|+++++..|++...+.+..
T Consensus 81 ~~~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 81 KLGMSLQELG-----------DKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 9999999988 999999999999999999987776653
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.29 E-value=1.1e-11 Score=83.98 Aligned_cols=65 Identities=31% Similarity=0.513 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
+.+|.+++..|++ ++|+..|+++++.+|+++++++.+|.++..+| ++++|+.+|+++++
T Consensus 1 ~~~a~~~~~~g~~----------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQGDY----------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCTHH----------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence 3678999998888 99999999999999999999999999999999 99999999999999
Q ss_pred hCCCCH
Q 028992 116 EEPTNE 121 (200)
Q Consensus 116 l~P~~~ 121 (200)
.+|+++
T Consensus 60 ~~P~~p 65 (65)
T PF13432_consen 60 LDPDNP 65 (65)
T ss_dssp HSTT-H
T ss_pred HCcCCC
Confidence 999985
No 29
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=7.4e-11 Score=79.59 Aligned_cols=91 Identities=25% Similarity=0.440 Sum_probs=85.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.++++++.+|.+...+..+|.++...+++ ++|+..|++++.++|.+..+++.+|.++.
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 34567899999999999999999999999999999999888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..| ++++|..+|+++++.+|+
T Consensus 80 ~~~-----------~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLG-----------KYEEALEAYEKALELDPN 100 (100)
T ss_pred HHH-----------hHHHHHHHHHHHHccCCC
Confidence 988 999999999999999884
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=3.8e-10 Score=89.84 Aligned_cols=92 Identities=25% Similarity=0.402 Sum_probs=84.0
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHYTLWSLGNAH 86 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--P~~~~a~~~LG~a~ 86 (200)
.+++.+++|++.++++++.+|.+...++++|.++...|++ ++|+..|++++... |.....++++|.++
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------EQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4567899999999999999999999999999999999888 99999999999864 56778899999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
...| ++++|..+|+++++.+|++.
T Consensus 146 ~~~g-----------~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 146 LKAG-----------DFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCcCCh
Confidence 9988 99999999999999999886
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=2.6e-10 Score=94.77 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=90.1
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLW 80 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~ 80 (200)
.+-+.+.|++|+..+++++..+|+++ ++++.+|.++...+++ ++|+..|+++++.+|+++. +++
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY----------AEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34567899999999999999999987 6889999999999998 9999999999999998887 799
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
.+|.++.... .+.....+++++|+..|+++++.+|++....+++
T Consensus 112 ~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 112 LRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 9999998751 1111112389999999999999999997555444
No 32
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=1.9e-10 Score=111.45 Aligned_cols=112 Identities=11% Similarity=0.096 Sum_probs=99.2
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+++.+++|...++.+++++|++..++.+++.+|.+++++ ++|+..++++|..+|+++++++.+|.++..
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----------eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----------EAGRAEIELYFSGGSSSAREILLEAKSWDE 166 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
+| ++++|+.+|++++..+|+++ .|+++++....-...+.++.
T Consensus 167 ~g-----------~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 167 IG-----------QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred hc-----------chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99 99999999999999999876 88888887544434444433
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=106.31 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
...|+|...+++|+++||....+|+..|--+.++.+. ..||++|++|+++||.|..+||.||.+|-.++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt----------~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~- 412 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT----------HAAIESYRRAVDINPRDYRAWYGLGQAYEIMK- 412 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc----------HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-
Confidence 3679999999999999999999999999999999887 99999999999999999999999999998877
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
-..=|+-|||||+.+.|++. +|++|+....-.-.++..|++.
T Consensus 413 ----------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 413 ----------MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred ----------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 66667777777777777775 5666665554444455555543
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.22 E-value=3.2e-10 Score=106.97 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=120.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+.+.+++|++.+++++..+|++ ..+.+++.++...|++ ++|+..++++++.+|+++.++..+|.+|.
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT----------AEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456788999999999999999988 7888999999998888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
..| ++++|+.+|+++++.+|++. .|++++++.|+.+.++..++..+..+
T Consensus 782 ~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 782 AQK-----------DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HCc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 988 99999999999999999875 67888899999999999999888755
Q ss_pred cccCCCCCcch--hhhhcccccchhhhhhhHHHHHHH
Q 028992 148 QTLGGGSSASS--AQSSKKKSSDLKYDIFGWAILAVG 182 (200)
Q Consensus 148 ~~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~~~ 182 (200)
+-. ..+.... .....+.+.++ |...+++....|
T Consensus 851 g~~-~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~g 885 (899)
T TIGR02917 851 GEA-DRALPLLRKAVNIAPEAAAI-RYHLALALLATG 885 (899)
T ss_pred CCH-HHHHHHHHHHHhhCCCChHH-HHHHHHHHHHcC
Confidence 432 2233334 23333333333 555677666544
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.22 E-value=2.6e-10 Score=115.69 Aligned_cols=116 Identities=20% Similarity=0.258 Sum_probs=104.1
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH----------
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---------- 78 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a---------- 78 (200)
-+.+.+++|+..++++++.+|++++++..+|.++...+++ ++|+..|+++++++|++...
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~----------~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR----------ARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 3457899999999999999999999999999999999998 99999999999999987642
Q ss_pred ----HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC
Q 028992 79 ----LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA 133 (200)
Q Consensus 79 ----~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~ 133 (200)
...+|.++...| ++++|+.+|+++++++|++. .|+++++++|..
T Consensus 350 ~~~~~~~~g~~~~~~g-----------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 350 RYWLLIQQGDAALKAN-----------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred hHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 234577888877 99999999999999999986 899999999999
Q ss_pred hHHHHHHHHHHH
Q 028992 134 PELHMELHKHGI 145 (200)
Q Consensus 134 ~e~~~~l~~~~~ 145 (200)
+.++..++..+.
T Consensus 419 ~~a~~~L~~l~~ 430 (1157)
T PRK11447 419 TNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=4.5e-11 Score=112.98 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=105.8
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
.-.||.|.+.|+.|+..+|.+-.+|+-+|.+|++++++ +.|.-.|++|++|||.+.-...++|.++..+|
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~----------e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL----------EFAEFHFQKAVEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh----------hHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence 34688999999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------HHHHHH-------HhCCCChHHHHHHHHHHHhc
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------LYQKSL-------EVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------~y~kAl-------e~~~k~~e~~~~l~~~~~~~ 147 (200)
+.|+|+.+|++|+.+||.|. .|.+|| ++.|+..-.|.-+|+++-..
T Consensus 538 -----------~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 538 -----------RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred -----------hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999998 444554 57899999999999887643
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.21 E-value=3.1e-10 Score=107.02 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=84.7
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
...+.+++|++.++...+.+|.++..+..+|.++...|++ ++|+..|++++..+|++ .++.+++.++..
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~ 748 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY----------PAAIQAYRKALKRAPSS-QNAIKLHRALLA 748 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777666 77777777777777776 666677777777
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.| ++++|++.++++++.+|++. .|+++++..|+.+..+.+++..+..+
T Consensus 749 ~g-----------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 749 SG-----------NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 66 77777777777777777765 66677777777777777777666544
Q ss_pred c
Q 028992 148 Q 148 (200)
Q Consensus 148 ~ 148 (200)
+
T Consensus 818 ~ 818 (899)
T TIGR02917 818 K 818 (899)
T ss_pred C
Confidence 3
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.19 E-value=5e-10 Score=113.60 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=108.3
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+.+.+++|++.++++++++|+++.++..+|.++...|++ ++|+..|+++++++|++..++..++.+|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~----------~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY----------AAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 3667899999999999999999999999999999999998 999999999999999999999999998754
Q ss_pred cCc---------ccC----------------------ChHHhhcCHHHHHHHHHHHHHhCCCCH----------------
Q 028992 89 CGF---------LTA----------------------DLSEAKGDFDKASECFQRAVDEEPTNE---------------- 121 (200)
Q Consensus 89 ~G~---------l~~----------------------~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------- 121 (200)
... +.+ +.....+++++|+.+|+++++++|++.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 320 000 112246899999999999999999986
Q ss_pred -----HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 122 -----LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 122 -----~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
.|+++++..|..++.++.++..+.
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 677888899999999998876543
No 39
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.18 E-value=4.4e-10 Score=108.18 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=97.6
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+-+.+++|+..++..+..+|+++++++++|.+++..|++ ++|++.|+++++++|++++++..+|.++..
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~----------~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP----------DAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999888888 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
.| ++++|+..|++++.++|++. .|++.+...|..++++..+.
T Consensus 123 ~g-----------~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 123 SK-----------QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred cC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 88 99999999999999999986 46666778888888887664
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.1e-10 Score=106.02 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.|++|...++++++++|+++-.+..++.++.+++++ +++...|+++.+.-|+.++++...|.+++.++
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----------~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq-- 476 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI----------AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ-- 476 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH--
Confidence 566666666666666666666666666666666655 66666666666666666666666666666655
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCC------CH----------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPT------NE----------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~------~~----------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
+|++|++.|.+|+++.|. +. +.+||++++|+--+++..++...
T Consensus 477 ---------qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 477 ---------QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred ---------hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 999999999999999999 43 88999999999999999999988
Q ss_pred Hhccc
Q 028992 145 INQQT 149 (200)
Q Consensus 145 ~~~~~ 149 (200)
++|+-
T Consensus 548 lQ~~~ 552 (606)
T KOG0547|consen 548 LQRGK 552 (606)
T ss_pred HHHhh
Confidence 86553
No 41
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.17 E-value=5.1e-10 Score=89.92 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=85.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
+.+++.|++|...+++++..+|+. +.+++++|.++..+|++ ++|+..|++++.++|++..++..+|.
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH----------DKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456789999999999999987764 57999999999999999 99999999999999999999999999
Q ss_pred HHHhcCcc---cCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 85 AHTSCGFL---TADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 85 a~~~~G~l---~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+|...|.. ..+..+|...+++|++++++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99998832 2344455555666777777777777765
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=5.2e-10 Score=89.29 Aligned_cols=103 Identities=17% Similarity=0.054 Sum_probs=81.6
Q ss_pred HHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
..++.|++|+..+++++.+.|+. +.+++++|.++...|++ ++|+..|++|+.++|...+++.++|.+
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH----------TKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35678999999999999987763 45899999999999999 999999999999999999999999999
Q ss_pred HHhcCc---ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 86 HTSCGF---LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~---l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+..+|+ ...+...|...+++|+.+|++++..+|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 995552 122444455555566666666666666543
No 43
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.15 E-value=1.4e-10 Score=106.71 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=67.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCcccCChHHhhcCH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---LWSLGNAHTSCGFLTADLSEAKGDF 103 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a---~~~LG~a~~~~G~l~~~~~~a~~~~ 103 (200)
.+|++++.|+|+|.+|..++++ ++|+.+|++||+++|+++++ |+|+|.+|..+| ++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry----------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~ 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV----------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EG 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CH
Confidence 5899999999999999999998 99999999999999999965 999999999999 99
Q ss_pred HHHHHHHHHHHHhC
Q 028992 104 DKASECFQRAVDEE 117 (200)
Q Consensus 104 d~A~~~fqkAl~l~ 117 (200)
++|+.++++|+++.
T Consensus 129 dEAla~LrrALels 142 (453)
T PLN03098 129 KKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999983
No 44
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=6.9e-10 Score=98.69 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=102.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+.....+++|+..+.+++.+||.+.++|+..|.++..++ .+ ++++..++++++.||++..+|..+|.++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l----------~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADL----------EEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhH----------HHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 455668899999999999999999999999999999886 34 8999999999999999999999999998
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
..+| ....++++.+++++++.||.|. .|.++|+.++....++...+..+.
T Consensus 117 ~~l~---------~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 117 EKLG---------PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHcC---------chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 8877 1124788999999999999985 667788889999999998887765
Q ss_pred h
Q 028992 146 N 146 (200)
Q Consensus 146 ~ 146 (200)
.
T Consensus 188 ~ 188 (320)
T PLN02789 188 R 188 (320)
T ss_pred h
Confidence 3
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=95.90 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=99.4
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-----------c------------------ccccH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------D------------------SKKII 58 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-----------~------------------~~~~~ 58 (200)
+-+.+.|++|++.++++++.+|.+..++..++.++...|+++... . ..+.+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 455667777777777777777777777777777777766654310 0 12456
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------- 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------- 121 (200)
++|+..|+++++++|++..+++.+|.+|...| ++++|+++|+++++.+|++.
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999988 99999999999999998862
Q ss_pred -----HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 122 -----LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 122 -----~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
.++++++..|+.+ .+..++..+..++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~ 297 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCC
Confidence 5666777888764 44777777765543
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.10 E-value=2e-10 Score=81.83 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 12 LLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+.|+.|+..+++.++.+|. +...++++|.+++.+|++ ++|+..+++ ++++|.+.+.++.+|.++..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y----------~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY----------EEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH----------HHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH----------HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999995 577888899999999999 999999999 999999999999999999999
Q ss_pred CcccCChHHhhcCHHHHHHHHHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
| ++++|+++|++|
T Consensus 72 ~-----------~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 G-----------KYEEAIKALEKA 84 (84)
T ss_dssp T------------HHHHHHHHHHH
T ss_pred C-----------CHHHHHHHHhcC
Confidence 9 999999999986
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.09 E-value=3.3e-09 Score=103.57 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=51.7
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+.+.+++|++.++++++++|++++++..+|.++...+++ ++|+..++++++.+|+++. +..+|.++...
T Consensus 61 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~----------~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY----------DEALVKAKQLVSGAPDKAN-LLALAYVYKRA 129 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHC
Confidence 344555555555555555555555555555555555555 5555555555555555555 55555555555
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
| ++++|+.+|+++++++|++.
T Consensus 130 g-----------~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 130 G-----------RHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred C-----------CHHHHHHHHHHHHHhCCCCH
Confidence 5 55555555555555555554
No 48
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=3.5e-09 Score=94.19 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=103.2
Q ss_pred HHhc-hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 9 DRLL-LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 9 ~~l~-~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
.+++ .+++++..+++++..||.+.++|+..+.++..+++. .++++++++++++++||++..+|..+|.++.
T Consensus 82 ~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~--------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 82 EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD--------AANKELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch--------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455 579999999999999999999999999999877652 1267899999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHHhCCCChHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------------~y~kAle~~~k~~e~~~~ 139 (200)
.+| ++++|++++.++|+.||.|. .+.++++++|+...++..
T Consensus 154 ~l~-----------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y 222 (320)
T PLN02789 154 TLG-----------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY 222 (320)
T ss_pred Hhh-----------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 988 99999999999999999996 134778889999999988
Q ss_pred HHHHHHh
Q 028992 140 LHKHGIN 146 (200)
Q Consensus 140 l~~~~~~ 146 (200)
++..+..
T Consensus 223 l~~ll~~ 229 (320)
T PLN02789 223 LRGLFKD 229 (320)
T ss_pred HHHHHhc
Confidence 8888765
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=9.2e-10 Score=93.64 Aligned_cols=96 Identities=25% Similarity=0.325 Sum_probs=89.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~a 85 (200)
+.+++.-+.|.+.|++|++++|++.++++|.|.-|+.+|++ ++|-..|++|+.. -|.-++++-|+|.|
T Consensus 79 Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 79 YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 57889999999999999999999999999999999999999 9999999999964 56677899999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
-...| +++.|.++|+|+++++|+++.-.
T Consensus 149 al~~g-----------q~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 149 ALKAG-----------QFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HhhcC-----------CchhHHHHHHHHHHhCcCCChHH
Confidence 99999 99999999999999999998433
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=9.2e-10 Score=101.83 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
..-.|-+.+.++++++|.+...++.+|.+|....+. ++-...|.+|..+||+++++|+..|.+++.++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~----------~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~-- 408 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS----------EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ-- 408 (606)
T ss_pred CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc----------HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH--
Confidence 445778889999999999999999999999998887 89999999999999999999999999999988
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
+|++|+.-|++|+.++|+|. .|+.+....|..||.|.-.+.++..||-
T Consensus 409 ---------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 409 ---------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred ---------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 99999999999999999997 5556667889999999999999987774
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.05 E-value=6.1e-10 Score=95.39 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=81.4
Q ss_pred HHHhchHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKD--PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~--P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
+.+.+.++++.+..+.+.... |.++..+..+|.++...|+. ++|+..|++|++++|++++++..++.+
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP----------DKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456666777777777755444 66777888888888877776 888888888888888888888888877
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
+...| +++++...+++..+..|+++ .|++++..+|++|..+..++.++
T Consensus 190 li~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 190 LIDMG-----------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HCTTC-----------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHCC-----------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 77777 77776666666666655554 66777777888888888888877
Q ss_pred Hhcc
Q 028992 145 INQQ 148 (200)
Q Consensus 145 ~~~~ 148 (200)
...+
T Consensus 259 ~~~g 262 (280)
T PF13429_consen 259 EQAG 262 (280)
T ss_dssp T---
T ss_pred cccc
Confidence 6433
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.05 E-value=5.4e-09 Score=92.28 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=93.5
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-HYTLWSLGNAHTS 88 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-~~a~~~LG~a~~~ 88 (200)
+.+.+++|++.++++++.+|++.+++..+|.++...|++ ++|+..|+++++.+|.+ ..++..++.+|..
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999988 99999999999999987 4667789999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
.| ++++|+.+++++++.+|++. .++++++..|+.+.++.-+.
T Consensus 262 ~g-----------~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 262 LG-----------DEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred cC-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 88 99999999999999999876 45555666666665543333
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.04 E-value=3.2e-09 Score=90.97 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+.+..++|++.++++++++|+|++++..++.+++..|++ +++.+.++...+..|+++..+..+|.+|..
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 4566777777777777777777777777777777666665 666666666666667777777777777777
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+| ++++|+.+|++++..+|+++
T Consensus 227 lg-----------~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 227 LG-----------RYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HT------------HHHHHHHHHHHHHHSTT-H
T ss_pred cc-----------cccccccccccccccccccc
Confidence 66 77777777777777777776
No 54
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.04 E-value=1.7e-09 Score=87.20 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=74.5
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992 20 TAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98 (200)
Q Consensus 20 ~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~ 98 (200)
...-...++ +++.+.++.+|.-+...|++ ++|+..|+-+..+||.+++.|++||.++..+|
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l----------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g-------- 83 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEF----------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK-------- 83 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------
Confidence 344455778 89999999999999999998 99999999999999999999999999999988
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCH
Q 028992 99 AKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 99 a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|++|+.+|.+|+.++|+++
T Consensus 84 ---~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 84 ---HWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred ---hHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999875
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=1.6e-09 Score=104.12 Aligned_cols=97 Identities=30% Similarity=0.369 Sum_probs=88.4
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
...+..+.+++|.+.|..++.+||+++.+.+.+|.+|++.|+. .+-++.+.+..|+++||.+|++|+.||.+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~--------~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP--------RLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc--------chHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999975 12455559999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+..+| ++++|.+||+-|+++++.++
T Consensus 764 ~k~~G-----------d~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 764 FKKLG-----------DSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHcc-----------chHHHHHHHHHHHhhccCCC
Confidence 99999 99999999999999999876
No 56
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=4.9e-10 Score=104.80 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=82.7
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
.+.|+.|+.+++.|+..+|+|...|++||..|..-.+. +|||+.|++||+|-|....++||||..++.+|
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 35789999999999999999999999999999887777 99999999999999999999999999999999
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.|++|+++|-.||.+.+.+
T Consensus 513 -----------~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 513 -----------AYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred -----------hHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998874
No 57
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=6e-09 Score=89.88 Aligned_cols=113 Identities=21% Similarity=0.187 Sum_probs=102.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+|-.+.+++|.+.|+..++-||+|.-++-+.=.++..+|+- .+||..+.+-|+.-|.|+++|+.|+.+|.
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~----------l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN----------LEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 56677899999999999999999999999888888888888 89999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
+.| +|++|.-|+++.+-.+|.++ .|.++|+++|+.....++|-
T Consensus 166 ~~~-----------~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 166 SEG-----------DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred hHh-----------HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 988 99999999999999999998 77888888886666665554
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.98 E-value=6.4e-09 Score=93.41 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
+...|..++..+++ ++|++.|++||+++|+++.+|+++|.+|..+| ++++|+.++++|+
T Consensus 5 l~~~a~~a~~~~~~----------~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al 63 (356)
T PLN03088 5 LEDKAKEAFVDDDF----------ALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAI 63 (356)
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Confidence 55678888888888 99999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 115 DEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 115 ~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
+++|++. .|+++++++|+.++++..+++.-
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999987 88899999999999999998763
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=1.1e-08 Score=88.73 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWSLGNA 85 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---~~~a~~~LG~a 85 (200)
+.|++|+..++..+..+|++ +.+++.+|.+++..+++ ++|+..|+++++..|+ .+++++.+|.+
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 58999999999999999998 68999999999999888 9999999999988887 58999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
+..+| ++++|+.+|++.++..|++...++|.+
T Consensus 227 ~~~~g-----------~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 227 MQDKG-----------DTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 99988 999999999999999999997777654
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=1.2e-08 Score=99.04 Aligned_cols=106 Identities=5% Similarity=-0.067 Sum_probs=98.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhc
Q 028992 22 EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKG 101 (200)
Q Consensus 22 e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~ 101 (200)
.......|++++++.+||.+...+|++ +||...++.+++++|++..++.+++.++..++
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~----------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~----------- 134 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRS----------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ----------- 134 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-----------
Confidence 333456799999999999999999999 99999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 102 DFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 102 ~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
++|+|+..++++++.+|++. .|++++.-+|+.++++.+++..+...+
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999999999999999997 899999989999999999999987444
No 61
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=5.1e-09 Score=91.80 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------
Q 028992 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------- 121 (200)
Q Consensus 57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------- 121 (200)
.|++|+.+|.+||+++|+++-.|.|.+-+|.++| .|+.|++-.+.||.+||.+.
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4699999999999999999999999999999999 99999999999999999996
Q ss_pred ------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 122 ------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 122 ------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
.|+|+|+++|.......+|..+-.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 899999999999998888875543
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1e-08 Score=95.42 Aligned_cols=94 Identities=22% Similarity=0.303 Sum_probs=58.9
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
|+=+.+.|.+|++.|.++++.+|+|+..+.|.+.||+.++++ .+|++..+.++++||+..-+|.-=|.++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~----------~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY----------PEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666 6666666666666666666666666666
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..+. +|++|+++|+++++.||++.
T Consensus 437 ~~mk-----------~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 437 RAMK-----------EYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHH-----------HHHHHHHHHHHHHhcCchhH
Confidence 5544 66666666666666666665
No 63
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.96 E-value=1.9e-09 Score=73.08 Aligned_cols=59 Identities=31% Similarity=0.453 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
+++|++.|++++..+|++.++++.+|.+|...| ++++|..++++++..+|+++.|...+
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 499999999999999999999999999999999 99999999999999999998777655
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.3e-08 Score=93.73 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=88.3
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
-||=-|+.-..|++.|++|+++||.|-.+|+.+|.+|--+..+ .-|+-.|++|+++.|+|+..|..||.|
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh----------~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH----------FYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch----------HHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 4566678889999999999999999999999999999988877 999999999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
|.+++ +.++|++||++|+...-.+.
T Consensus 442 Y~kl~-----------~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 442 YEKLN-----------RLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhc-----------cHHHHHHHHHHHHhccccch
Confidence 99998 99999999999999987754
No 65
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.94 E-value=5.6e-09 Score=71.75 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=61.4
Q ss_pred HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 39 GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 39 G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
..+++..+++ ++|+.+++++++++|+++..++.+|.+|..+| +|++|+.+|+++++.+|
T Consensus 2 ~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDY----------EEALEVLERALELDPDDPELWLQRARCLFQLG-----------RYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCH----------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCC
Confidence 4566776777 99999999999999999999999999999999 99999999999999999
Q ss_pred CCHHHHHHHH
Q 028992 119 TNELYQKSLE 128 (200)
Q Consensus 119 ~~~~y~kAle 128 (200)
++........
T Consensus 61 ~~~~~~~~~a 70 (73)
T PF13371_consen 61 DDPDARALRA 70 (73)
T ss_pred CcHHHHHHHH
Confidence 9886555443
No 66
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=1.4e-08 Score=99.33 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=108.7
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
..+.+++|++.++++...+|.++..+..+|.++...+++ ++|+..|+++++++|++++++..+|.++...
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQW----------QNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999999999999999 9999999999999999999999999999998
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
| ++++|+.+++++++.+|++. .|++++++.|+.++++..++..+.
T Consensus 97 g-----------~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 97 G-----------QYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred C-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8 99999999999999999985 888999999999999999988775
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.2e-08 Score=87.80 Aligned_cols=97 Identities=21% Similarity=0.197 Sum_probs=86.8
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
|.+.|+.|...+.++..++|+|.+.|.-+|.+|-++|++ ++|...|.+|+++.|+++.+..|||..|...
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 567899999999999999999999999999999999999 9999999999999999999999999999998
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
| ++++|..++.++...-+.+...+..|
T Consensus 182 g-----------d~~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 182 G-----------DLEDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred C-----------CHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 8 99999999999988888776544444
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.4e-09 Score=96.34 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=114.8
Q ss_pred hhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 5 ~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
.+..-++...|++.+..+..--.+|.-++---.-|+.++..++| .+|+..|.+||+.||+++..|-|++.
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy----------~~Av~~YteAIkr~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY----------PEAVKHYTEAIKRDPEDARLYSNRAA 400 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 45778999999999999999999999999888999999999998 99999999999999999999999999
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
||+.+| ++..|+...+++++++|++. .|.++++.+|+.-++--.+.+.
T Consensus 401 c~~kL~-----------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 401 CYLKLG-----------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHh-----------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 999999 99999999999999999997 8999999999999999888888
Q ss_pred HHhc
Q 028992 144 GINQ 147 (200)
Q Consensus 144 ~~~~ 147 (200)
+..|
T Consensus 470 ~~a~ 473 (539)
T KOG0548|consen 470 VEAQ 473 (539)
T ss_pred HHHh
Confidence 7765
No 69
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=1.5e-08 Score=82.35 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=89.4
Q ss_pred CCChhHHHH----------hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 2 EFSQSDFDR----------LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 2 ~~~~~~~~~----------l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+++++++|. .+.+++|...++-....||.+++.+..||.++..++++ ++|+..|..|..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~Ai~~Y~~A~~l 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QKACDLYAVAFTL 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHc
Confidence 456666654 46899999999999999999999999999999998888 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++++|...+..|.||..+| +.++|..||+-+++ +|.+.
T Consensus 101 ~~~dp~p~f~agqC~l~l~-----------~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLMR-----------KAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred ccCCCCccchHHHHHHHhC-----------CHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999 99999999999999 56655
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.3e-08 Score=93.74 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=89.3
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc---------------c----------------c
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS---------------D----------------S 54 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~---------------~----------------~ 54 (200)
-++-|+..++-|-+.+..|+.+.|+|+-++.-+|.+.+..+.|..+. + -
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 46778888889999999999999999988877777766544433210 0 0
Q ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
.+++++||..|++||.+.|+++++|-.+|.+|..+| ++++|+++|-+|+.++|+|...+.-|
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg-----------nld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG-----------NLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-----------ChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 145699999999999999999999999999999988 99999999999999999997444333
No 71
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.87 E-value=6.7e-09 Score=70.12 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=54.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~ 76 (200)
+-+.+.|++|++.++++++.+|++++++..+|.++..+|++ ++|+..|+++++++|++|
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTT-H
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCC
Confidence 45678999999999999999999999999999999999998 999999999999999986
No 72
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.86 E-value=8.3e-09 Score=70.25 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=53.8
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCC
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDP 73 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP 73 (200)
.+-+++.|++|++.++++++++|+++.+++++|.++..++ ++ ++|+..|++|+++||
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHcCc
Confidence 4567889999999999999999999999999999999998 67 999999999999999
No 73
>PRK11906 transcriptional regulator; Provisional
Probab=98.85 E-value=2.1e-08 Score=92.57 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=84.7
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
...-.+|++.+++++++||+|+.+++.+|.++...+++ +.|+..|++|+.++|+.+++|+.+|.++.-.|
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 34467899999999999999999999999999999998 99999999999999999999999999999988
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+.++|.+++++|++++|.-.
T Consensus 387 -----------~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 387 -----------KIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred -----------CHHHHHHHHHHHhccCchhh
Confidence 99999999999999999754
No 74
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4e-08 Score=86.07 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
.+..+..++..+..||+|++-|..||.+|..++++ .+|...|.+|++|.|++++.+-.+|.+++.++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~----------~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a--- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA----------SDALLAYRNALRLAGDNPEILLGLAEALYYQA--- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---
Confidence 34445566666777777777777777777777777 67777777777777777777777777665433
Q ss_pred CChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 94 ADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
......++...|++|+.+||+|.
T Consensus 205 -----~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 205 -----GQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred -----CCcccHHHHHHHHHHHhcCCccH
Confidence 12245566667777777777665
No 75
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9.5e-08 Score=83.75 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=91.1
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
=++..|..|...|.+++.+.|++++.+..+|.+|...+.- .+..++...|++||++||++..+++.||..++.
T Consensus 167 m~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 167 MALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-------QMTAKARALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4677999999999999999999999999999999987653 455899999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
.| +|.+|+..+++-++..|.+..-+-.+
T Consensus 240 ~g-----------~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 240 QG-----------DYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred cc-----------cHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99 99999999999999999887544444
No 76
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=3.7e-08 Score=66.12 Aligned_cols=67 Identities=27% Similarity=0.531 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
+++++|.++...+++ ++|+..|+++++++|+++.+++.+|.++...| ++++|+++|+++
T Consensus 2 ~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYKLGDY----------DEALEYYEKALELDPDNADAYYNLAAAYYKLG-----------KYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 578899999998888 99999999999999999999999999999988 999999999999
Q ss_pred HHhCCCCH
Q 028992 114 VDEEPTNE 121 (200)
Q Consensus 114 l~l~P~~~ 121 (200)
++..|.+.
T Consensus 61 ~~~~~~~~ 68 (100)
T cd00189 61 LELDPDNA 68 (100)
T ss_pred HhCCCcch
Confidence 99988775
No 77
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=8e-08 Score=76.64 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHh
Q 028992 14 SEHNRKTAEANYAKDPLD--ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTS 88 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d--~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~ 88 (200)
|..+...+...+..++.+ +..++++|.++...+++ ++|+..|++|+.+.|+. +.++.++|.+|..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY----------AEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 566666776666777777 67789999999999998 99999999999998774 4589999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.| ++++|+.+|++|+.++|.+.
T Consensus 85 ~g-----------~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 85 NG-----------EHTKALEYYFQALERNPFLP 106 (168)
T ss_pred cC-----------CHHHHHHHHHHHHHhCcCcH
Confidence 99 99999999999999988875
No 78
>PRK11906 transcriptional regulator; Provisional
Probab=98.81 E-value=5.2e-08 Score=90.00 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 14 SEHNRKTAEANY---AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 14 fe~A~~~~e~a~---~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
.+.|+..+.+++ +++|+++.++..++.++.......... ......+|++.-++|+++||.|+.+++.+|.++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467888899999 999999999999999988764433333 5566799999999999999999999999999999988
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+++.|+..|++|+.++|+++
T Consensus 353 -----------~~~~a~~~f~rA~~L~Pn~A 372 (458)
T PRK11906 353 -----------QAKVSHILFEQAKIHSTDIA 372 (458)
T ss_pred -----------chhhHHHHHHHHhhcCCccH
Confidence 99999999999999999998
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.79 E-value=9.8e-08 Score=69.93 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
+++++.+|..+...+++ ++|+..|++++..+|++ +.+++.+|.++...| ++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDY----------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-----------KYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-----------cHHHHHH
Confidence 57889999999999998 99999999999999987 579999999999988 9999999
Q ss_pred HHHHHHHhCCCCH
Q 028992 109 CFQRAVDEEPTNE 121 (200)
Q Consensus 109 ~fqkAl~l~P~~~ 121 (200)
+|++++..+|++.
T Consensus 61 ~~~~~~~~~p~~~ 73 (119)
T TIGR02795 61 AFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHCCCCC
Confidence 9999999999863
No 80
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.7e-08 Score=88.67 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=92.6
Q ss_pred HHHHhchHHHHHHHHHHHHhhCC----CC-----------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDP----LD-----------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P----~d-----------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
.+=|.+.|+.|...|++++..=+ .+ ..++.|++.+++.+.++ .+|+.+.+++|++
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~----------~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY----------KEAIESCNKVLEL 286 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH----------HHHHHHHHHHHhc
Confidence 34456788899999888775322 11 22679999999999999 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH--------HhCCCChHHHHHHHHH
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL--------EVSTKAPELHMELHKH 143 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl--------e~~~k~~e~~~~l~~~ 143 (200)
+|+|.-++|-.|.||..+| +|+.|+..|++|++++|+|-..+.-| +.+.+.-+.|.++-..
T Consensus 287 ~~~N~KALyRrG~A~l~~~-----------e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALG-----------EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CCCchhHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 99999999999999999998444444 3444445555444433
Q ss_pred H
Q 028992 144 G 144 (200)
Q Consensus 144 ~ 144 (200)
.
T Consensus 356 ~ 356 (397)
T KOG0543|consen 356 L 356 (397)
T ss_pred c
Confidence 3
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=7.1e-08 Score=80.09 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=94.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH-----
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL----- 79 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~---~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~----- 79 (200)
+.+++.+++|+..++++++.+|+++. +++.+|.++..... ......+..++|++.|+++++.+|++..++
T Consensus 80 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 80 YYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 35678999999999999999999887 79999999987510 011122345999999999999999997653
Q ss_pred ------------HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 80 ------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 80 ------------~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
+.+|.+|...| ++++|+..|+++++..|++ |..++++..++..+...
T Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~----------~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 158 MDYLRNRLAGKELYVARFYLKRG-----------AYVAAINRFETVVENYPDT----------PATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHCCCC----------cchHHHHHHHHHHHHHc
Confidence 35677788877 9999999999999999985 56678888888888754
Q ss_pred c
Q 028992 148 Q 148 (200)
Q Consensus 148 ~ 148 (200)
+
T Consensus 217 g 217 (235)
T TIGR03302 217 G 217 (235)
T ss_pred C
Confidence 4
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.78 E-value=2.4e-08 Score=67.61 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=59.1
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
.+.|++|++.+++++..+|++.++++.+|.+++..|++ ++|...+++++..+|+++.++..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY----------DEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H----------HHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 56899999999999999999999999999999999999 99999999999999999888777664
No 83
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.77 E-value=1.3e-07 Score=89.08 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~a~~~~G 90 (200)
.+++|+..++++++++|+++.++..++.++.....+.. .....+..+.+..++++.+ +|.++.+|..+|..+...|
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 37799999999999999999999999888866544321 1112233444444444432 4444455555555544444
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
++++|..+|++|++++|
T Consensus 435 -----------~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 435 -----------KTDEAYQAINKAIDLEM 451 (517)
T ss_pred -----------CHHHHHHHHHHHHHcCC
Confidence 55555555555555555
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.74 E-value=1.2e-07 Score=76.09 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=65.8
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDF 103 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~ 103 (200)
.+|..+.+++++|..+...|++ ++|+.+|+++++++|+. ..++.++|.++...| ++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~ 88 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEY----------AEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EH 88 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CH
Confidence 3455777899999999999998 99999999999998875 468999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 028992 104 DKASECFQRAVDEEPTNE 121 (200)
Q Consensus 104 d~A~~~fqkAl~l~P~~~ 121 (200)
++|+.+|+++++.+|++.
T Consensus 89 ~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 89 DKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHHHhCcccH
Confidence 999999999999988765
No 85
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.73 E-value=1.2e-08 Score=71.25 Aligned_cols=67 Identities=31% Similarity=0.479 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHhcCcccCChHHhhc
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI----DPAK---HYTLWSLGNAHTSCGFLTADLSEAKG 101 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l----dP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~ 101 (200)
|+-+.++.++|.++..+|++ ++|+..|++|+.+ .+++ ..++.++|.+|..+|
T Consensus 2 ~~~a~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g----------- 60 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRY----------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG----------- 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------
Confidence 55578899999999999999 9999999999966 2232 457889999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 028992 102 DFDKASECFQRAVDE 116 (200)
Q Consensus 102 ~~d~A~~~fqkAl~l 116 (200)
++++|+++|++|+++
T Consensus 61 ~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 61 DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999986
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=7.9e-08 Score=84.00 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----HHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----YTLWSLG 83 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----~a~~~LG 83 (200)
+...+.+++|++.++++++++|+++.++..+|.++.+.|++ ++|+..+++++..+|.++ ..+|.+|
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 35677899999999999999999999999999999999998 999999999999988654 3567899
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
.++...| ++++|+.+|++++..+|
T Consensus 194 ~~~~~~G-----------~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLERG-----------DYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHCC-----------CHHHHHHHHHHHhcccc
Confidence 9999999 99999999999987777
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.73 E-value=1.7e-07 Score=92.67 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=90.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKF 65 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~~l 65 (200)
|.+.++.|+..++++++.+|+++-...-|..++...|++..+.. ..+.+++|++.|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566677777777777777764332255555544444432110 114458999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHH
Q 028992 66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQK 125 (200)
Q Consensus 66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~k 125 (200)
+++++++|++++++..|+.+|...+ +.++|++.+++++..+|++. .|++
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~-----------q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAG-----------RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcC-----------CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999998888888888877 88888888888888888875 6777
Q ss_pred HHHhCCCChHHHHHHHHHHHh
Q 028992 126 SLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 126 Ale~~~k~~e~~~~l~~~~~~ 146 (200)
+++..|+.++++.++...+..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHH
Confidence 788888888888888876653
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.1e-07 Score=83.24 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=118.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+=||+++-+|.+.++.+++..|. ++.+..++.+|.+..|. +.|+..+.+.+..-|.+...+...+.+|.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP----------~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQP----------ERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccH----------HHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 45889999999999999988875 78888999999999888 99999999999999999998888888998
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH-
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI- 145 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~- 145 (200)
.++ ++++|+++|+++++++|.|- .||+-|+|--..||++.||+.-.+
T Consensus 302 am~-----------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 302 AME-----------QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHH-----------hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 877 99999999999999999995 899999999999999999998665
Q ss_pred hccccCCCCCcch----hhhhc-ccccchhhhh
Q 028992 146 NQQTLGGGSSASS----AQSSK-KKSSDLKYDI 173 (200)
Q Consensus 146 ~~~~~~~~~~~~~----~~~~~-~~~~~~~y~~ 173 (200)
.||--. .-++. .+..+ -..+|+||.+
T Consensus 371 aqQ~D~--~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 371 AQQIDL--VLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred hcchhh--hHHHHHHHHhhccCcchhhhhhhcc
Confidence 455311 12222 22332 3678998875
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=3.9e-07 Score=78.59 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=57.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
.+|.|.+.+.-+|..++..|+| .+|+..|++|..++|++.++|..+|.+|...| ++++|
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~----------~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-----------r~~~A 153 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNF----------GEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-----------RFDEA 153 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcch----------HHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-----------ChhHH
Confidence 3444444444455555555555 89999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHhCCCCH
Q 028992 107 SECFQRAVDEEPTNE 121 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~ 121 (200)
-.-|.+|+++.|+++
T Consensus 154 r~ay~qAl~L~~~~p 168 (257)
T COG5010 154 RRAYRQALELAPNEP 168 (257)
T ss_pred HHHHHHHHHhccCCc
Confidence 888888888888876
No 90
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=1.8e-07 Score=88.24 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 14 SEHNRKTAEANYAK--DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 14 fe~A~~~~e~a~~~--~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
.+.+.+.+++++.+ +|.++.++..+|......+++ ++|+..|++|+.++| +..+|..+|.++...|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G- 467 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYELKG- 467 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC-
Confidence 45666777776664 888999999999998888888 999999999999999 5899999999999999
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
++++|+++|++|++++|.++.|-
T Consensus 468 ----------~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 468 ----------DNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred ----------CHHHHHHHHHHHHhcCCCCchHH
Confidence 99999999999999999988543
No 91
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.4e-07 Score=64.70 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=59.6
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG 83 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG 83 (200)
+...|++|++.+++++.++|+++..+...|.++..+|++ ++|++.|+++++++|+++++.....
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456899999999999999999999999999999999999 9999999999999999999876554
No 92
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=8.7e-07 Score=68.48 Aligned_cols=100 Identities=23% Similarity=0.180 Sum_probs=88.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---CHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWS 81 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---~~~a~~~ 81 (200)
++.++..++|+..|+++++..+.+ ..++..+|.+|..+|++ ++|+..|++++.-.|+ +..+...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHHH
Confidence 577899999999999999986665 56889999999999999 9999999999999898 8888888
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhC
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS 130 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~ 130 (200)
++.++...| +.++|+..+-.++.. ....|++++...
T Consensus 81 ~Al~L~~~g-----------r~~eAl~~~l~~la~--~~~~y~ra~~~y 116 (120)
T PF12688_consen 81 LALALYNLG-----------RPKEALEWLLEALAE--TLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHCC-----------CHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 999999999 999999999998874 444999998754
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=7.4e-07 Score=77.84 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=69.4
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc----------------------------ccccccHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV----------------------------SDSKKIINEAI 62 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~----------------------------~~~~~~~~eAi 62 (200)
.+.+++|++.++++++.+|+|..++.. +..+..++.+... ....+.+++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 357888999999999999999887765 5555555443210 01123467788
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 63 ~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..++++++++|+++.++..+|.+|...| ++++|+.+++++++..|.
T Consensus 135 ~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 135 EAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCC
Confidence 8888888888888777777888887777 888888888888777664
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1e-06 Score=82.92 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=109.9
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKF 65 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~~l 65 (200)
-.+.+.+||+.+.++-.+||..+.+|...|.++...+.+.|... ..+.++-|...|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 34678999999999999999999999999999988877765321 124578899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC----CCC-------H-------------
Q 028992 66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE----PTN-------E------------- 121 (200)
Q Consensus 66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~----P~~-------~------------- 121 (200)
.+|+.|.|++|-++..+|.+.+..+ .|.+|..+|+.++..- ++. .
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~-----------~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYE-----------EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHh-----------hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999999999999999888755 9999999999999321 111 0
Q ss_pred ----HHHHHHHhCCCChHHHHHHHHHHHhccccCCCCCcch
Q 028992 122 ----LYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASS 158 (200)
Q Consensus 122 ----~y~kAle~~~k~~e~~~~l~~~~~~~~~~~~~~~~~~ 158 (200)
.|+++|.+.|+++..|..+|-.+.-++.. ..|+.+.
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl-d~Aid~f 512 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNL-DKAIDHF 512 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh-HHHHHHH
Confidence 88999999999999999999888766654 2244444
No 95
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.7e-06 Score=74.95 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
-+|++..-.-++.-++|.++|.-++.+|+..++| +.|+-|||+.+-++|.+|-.+--||.+++.+|
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g---- 202 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG---- 202 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh----
Confidence 4788888899999999999999999999999999 99999999999999999999999999987766
Q ss_pred ChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 95 DLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..++++-|.+||.+|++++|.+.
T Consensus 203 ----g~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 203 ----GAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred ----hHHHHHHHHHHHHHHHHhChHhH
Confidence 26689999999999999999665
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.50 E-value=4.6e-06 Score=75.78 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=89.2
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc-----------------------ccH-----HHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK-----------------------KII-----NEAI 62 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~-----------------------~~~-----~eAi 62 (200)
.+.+++|+..+++..+.+|+++.++..++.++...++++...+.. +.+ ++++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 368999999999999999999999999999999998876321100 112 2223
Q ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHhCCCC
Q 028992 63 SKFEEALVIDP----AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVSTKA 133 (200)
Q Consensus 63 ~~le~AL~ldP----~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----~y~kAle~~~k~ 133 (200)
+.++++.+..| +++..+.+++..+...| ++++|.+..+++++..|++. .++....+.++.
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-----------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-----------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 47777888888 58999999999999988 99999999999999999998 555555555544
Q ss_pred h
Q 028992 134 P 134 (200)
Q Consensus 134 ~ 134 (200)
+
T Consensus 315 ~ 315 (409)
T TIGR00540 315 N 315 (409)
T ss_pred h
Confidence 4
No 97
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.50 E-value=1.7e-06 Score=84.75 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc------------------------ccccccHHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV------------------------SDSKKIINEAISKFEE 67 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~------------------------~~~~~~~~eAi~~le~ 67 (200)
+.+++|.+.+.+.+.++|.++.++..||.++-.+|+.+.+ +...+++++|+.||.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7899999999999999999999999999999998876432 1233567888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
|++.+|.+-...|.....|..+| +...|+.+|++.+.++|
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G-----------~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTG-----------DLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHhhCC
Confidence 88888888888888888888877 88888888888888888
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=3.3e-06 Score=78.21 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=102.9
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+.+.+++|+..+...+...|+|+-.+...+.++++.++. .+|++.|++++.++|+.+-...++|++|...
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~----------~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA----------KEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH----HHHHhCCCChHHHHHHHHHHHhccc
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ----KSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~----kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
| ++.+|+...++.+..+|+++... ++-+..-+..+.+...+..++-.+.
T Consensus 388 g-----------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 388 G-----------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred C-----------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9 99999999999999999998333 3334556677777777777664443
No 99
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2e-06 Score=84.80 Aligned_cols=134 Identities=19% Similarity=0.141 Sum_probs=109.3
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.|=+|++-+.|+..+++++++||.++.++..||...+...+. ..+..++..+.+|..+||.+|.++..|++-+
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-------~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS-------DSYKKGVQLLQRAYKENNENPVALNHLANHF 280 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-------HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 356788899999999999999999999999999888764432 2348888888899999998888888777776
Q ss_pred HhcCc--------------------------ccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 028992 87 TSCGF--------------------------LTADLSEAKGDFDKASECFQRAVDEEPTNE------------------- 121 (200)
Q Consensus 87 ~~~G~--------------------------l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------- 121 (200)
+..|- ...-..-++|+||+|..||.+++..+|++.
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~ 360 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEE 360 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHH
Confidence 65551 012233567799999999999999999993
Q ss_pred ---HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 122 ---LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 122 ---~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
++++.++..|...+...-||..+..-
T Consensus 361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 88899999999999999999888754
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.46 E-value=3.1e-06 Score=83.82 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhh
Q 028992 21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAK 100 (200)
Q Consensus 21 ~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~ 100 (200)
+--.....|+.++..+.-+.+..+.|++ ..|++.|+++++.+|+++.+.+.+..++...|
T Consensus 23 ~~~~~~~~p~~~~~~y~~aii~~r~Gd~----------~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G---------- 82 (822)
T PRK14574 23 FISGFVVNPAMADTQYDSLIIRARAGDT----------APVLDYLQEESKAGPLQSGQVDDWLQIAGWAG---------- 82 (822)
T ss_pred HHcccccCccchhHHHHHHHHHHhCCCH----------HHHHHHHHHHHhhCccchhhHHHHHHHHHHcC----------
Confidence 3334568899999999999999999998 99999999999999999755557777777777
Q ss_pred cCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 101 GDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 101 ~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
++++|+.++++++.-+|.+. .|+++++.+|+.++++..++..+
T Consensus 83 -~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y 146 (822)
T PRK14574 83 -RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQ 146 (822)
T ss_pred -CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 66666666666662222221 66666666666666666554333
No 101
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.45 E-value=1.3e-06 Score=83.12 Aligned_cols=89 Identities=24% Similarity=0.206 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+.|...++.++..++..|.+++.+...|..|..+|+- ++|-++.+.+++.|+..+-+|..+|.++.+..
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~----------~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK- 89 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK----------EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK- 89 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch----------HHHHHHHHHHhccCcccchhHHHHHHHHhhhh-
Confidence 3677888999999999999999999999999999998 99999999999999999999999999999966
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|++|++||+.|+.++|+|.
T Consensus 90 ----------~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 90 ----------KYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred ----------hHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999999998
No 102
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.45 E-value=1.9e-07 Score=56.53 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 64 ~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
+|++||++||+++++|++||.+|...| ++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhcC
Confidence 479999999999999999999999999 9999863
No 103
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=4.6e-07 Score=81.13 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=71.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
|-|..+++|.+.|+..++++|.+.++..-.|.-++.-++. +-|+..|++.|.+--.+++.+.|+|.|.+.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P----------E~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP----------EMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh----------HHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 3445556666666666666666666555555555555555 666666666666666666666666666666
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCC--CCH----------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEP--TNE----------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P--~~~----------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
-+ +||-++.+|+||+..-- +.. .+|-+|.-+++..|.+.||+..-
T Consensus 371 aq-----------Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 371 AQ-----------QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred hc-----------chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 55 67777777777765533 222 66666666777777777776544
Q ss_pred H
Q 028992 145 I 145 (200)
Q Consensus 145 ~ 145 (200)
.
T Consensus 440 ~ 440 (478)
T KOG1129|consen 440 A 440 (478)
T ss_pred h
Confidence 4
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=2.9e-06 Score=76.98 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=66.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+.+..++|.+..+++++ .|.|++.....+.+. .+++ ++++..+++.++.+|++++.+.++|.++...
T Consensus 275 ~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~~~~----------~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 275 ECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK--TNNP----------EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc--CCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 34455666666666666 333444333333321 1333 8899999999999999999999999999998
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
+ ++++|.++|+++++.+|++..
T Consensus 342 ~-----------~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 342 G-----------EWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred C-----------CHHHHHHHHHHHHhcCCCHHH
Confidence 8 999999999999999999874
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.41 E-value=2.2e-06 Score=77.26 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.|.+|+..|-+|++.||++-.++++.|.+|+.+|+- .-|+.-|.++|++.|+...+....|++++++|
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks----------k~al~Dl~rVlelKpDF~~ARiQRg~vllK~G-- 120 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS----------KAALQDLSRVLELKPDFMAARIQRGVVLLKQG-- 120 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC----------ccchhhHHHHHhcCccHHHHHHHhchhhhhcc--
Confidence 577888888888888888888888888888888887 77888888888888888888888888888888
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+++|..-|++.|+.+|++.
T Consensus 121 ---------ele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 121 ---------ELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred ---------cHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999886
No 106
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.41 E-value=1e-05 Score=73.35 Aligned_cols=130 Identities=11% Similarity=0.094 Sum_probs=97.1
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHH---------------HH------------
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIIN---------------EA------------ 61 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~---------------eA------------ 61 (200)
-+.+.+++|++.+++..+.+|+++.++..++.++...|+++...+....+. .+
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999988843221000000 01
Q ss_pred -HHHHHHHH----HhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------
Q 028992 62 -ISKFEEAL----VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------- 121 (200)
Q Consensus 62 -i~~le~AL----~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------- 121 (200)
.+.+.+.. +-.|+++.++..++.++...| +.++|.+..+++++..|+..
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g-----------~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~ 312 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD-----------DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQ 312 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHH
Confidence 01111111 234568888888899999988 99999999999999766554
Q ss_pred ---HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 122 ---LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 122 ---~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
..++.++..|++|+++..+++.++.++-
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 5556667889999999999999987664
No 107
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.40 E-value=6e-07 Score=53.24 Aligned_cols=34 Identities=38% Similarity=0.663 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+.+|+++|.+|..+| ++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence 468999999999999 9999999999999999985
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=2e-06 Score=67.23 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=70.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
..+.|++|.+.++.++...|++ +.+..+++.+++..+++ ++|+..|+. +.-++-.+.++..+|.+|
T Consensus 60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 3478999999999999988665 45788899999998888 999999966 455666778888999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
...| ++++|+..|++||
T Consensus 129 ~~~g-----------~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQG-----------DYDEARAAYQKAL 145 (145)
T ss_pred HHCC-----------CHHHHHHHHHHhC
Confidence 9988 9999999999985
No 109
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=6.3e-06 Score=69.64 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=90.9
Q ss_pred hchHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~-----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
-+.|++|...|..|++..|..++ .+.|.|.|++.++.. +.||.-+-+||+|+|..-.|+--.+.+
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~----------e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW----------ESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH----------HHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 35799999999999999998655 668899999998888 999999999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH-hCCCC
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE-VSTKA 133 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle-~~~k~ 133 (200)
|...- .|++|+.-|++.++.+|.....|+++. +.|+.
T Consensus 178 yek~e-----------k~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 178 YEKME-----------KYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHhhh-----------hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 99866 999999999999999999998888884 34443
No 110
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=1.1e-06 Score=72.34 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=60.4
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
..|....+++|+..+++++.+||+..+++++||++|..++...... +...-+++|..+|++|..++|++....-.|..
T Consensus 44 g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 44 GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3477789999999999999999999999999999999998854433 45566899999999999999999765444433
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.37 E-value=2.9e-06 Score=84.12 Aligned_cols=97 Identities=27% Similarity=0.290 Sum_probs=87.1
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
|.=|-+.||+|++..+++++.||+|-.++.-+|.++..+++ . ++|-++|-.|.++||++.-||-.||+.
T Consensus 11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~l----------e~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDL----------EKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCH----------HHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 34466789999999999999999999999999999999988 6 999999999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
|.+. |+ -.+++++..||++++.+.|+..
T Consensus 81 ye~~----~d----Il~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERY----ND----ILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHcc----ch----hhhhhHhHHHHHHHHHhhhhhh
Confidence 9872 12 2279999999999999998876
No 112
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.8e-06 Score=73.63 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=94.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+|.++.-.-||-.+..++.++|.-+++++.+|.-|...|+| +-|.+.|.-.+++||..-.++.|.|.+++
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f----------daa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc----------hHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45667777899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHhCCCCh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVSTKAP 134 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----~y~kAle~~~k~~ 134 (200)
.-| +|.-|.+-|.+--+.||+++ .|-.-.+++|+..
T Consensus 145 Y~g-----------R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A 185 (297)
T COG4785 145 YGG-----------RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQA 185 (297)
T ss_pred ecC-----------chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHH
Confidence 888 99999999999999999998 5555556666544
No 113
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.37 E-value=4.3e-06 Score=82.57 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc---------------------------ccccccHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV---------------------------SDSKKIINEAISKF 65 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~---------------------------~~~~~~~~eAi~~l 65 (200)
-|..+.....+++..||.||.+++.|++-++..++++.+ .-+.|.+++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 467788889999999999999998888888877766532 11336679999999
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------
Q 028992 66 EEALVIDPAK-HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------- 121 (200)
Q Consensus 66 e~AL~ldP~~-~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------- 121 (200)
.++++.+|++ .-.++.||..|...| +++.|+.||++.+...|++.
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~-----------dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRG-----------DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhc-----------hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999999 788899999999988 99999999999999999997
Q ss_pred --HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 122 --LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 122 --~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
...|+++..|.+.++|.+++..+-.+
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 44577788899999999998877643
No 114
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-06 Score=74.42 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
.+|..|+..|.+++.++|+.+.-++|.+.+++.+.++ +.+.+-..+|++++|+..-+++.||.+.....
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~----------~~v~~dcrralql~~N~vk~h~flg~~~l~s~- 92 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW----------EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK- 92 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh----------hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-
Confidence 4799999999999999999999999999999999999 99999999999999999999999999998866
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.|++|+.++++|..+
T Consensus 93 ----------~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 ----------GYDEAIKVLQRAYSL 107 (284)
T ss_pred ----------cccHHHHHHHHHHHH
Confidence 899999999999655
No 115
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=9.8e-07 Score=81.87 Aligned_cols=142 Identities=18% Similarity=0.281 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.|.+|-.++..++..+--++.+++|.|++-+..|++ +.|.+.|++||.-|....++++|+|..+..+|
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~----------dka~~~ykeal~ndasc~ealfniglt~e~~~-- 538 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL----------DKAAEFYKEALNNDASCTEALFNIGLTAEALG-- 538 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH----------HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc--
Confidence 566777777777777777788888877777766666 99999999999999999999999999999999
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhccccC
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTLG 151 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~~~ 151 (200)
++|+|++||-+.-.+=-++. +|-++..+.|.+|.....|+..+-..+.
T Consensus 539 ---------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd-- 607 (840)
T KOG2003|consen 539 ---------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD-- 607 (840)
T ss_pred ---------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc--
Confidence 99999999998765544443 5556666778888888888876653221
Q ss_pred CCCCcchhhhhcccccchhhhhhhHHHHHHHHHHHHH
Q 028992 152 GGSSASSAQSSKKKSSDLKYDIFGWAILAVGIVAWVG 188 (200)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~y~~~g~~~l~~~~~~~~~ 188 (200)
|.+.-.-|||--.+.---+-.|-|+|
T Consensus 608 -----------ksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 608 -----------KSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred -----------hhhhhhhhhhcccccCcchHHHHHHH
Confidence 22333456665555544555666765
No 116
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.35 E-value=1.6e-06 Score=78.22 Aligned_cols=102 Identities=20% Similarity=0.105 Sum_probs=95.5
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
++|=+.+.|++|+.+|.+++..+|.++-.++|.+.+|+++.+| -.|.+-++.|+.+|-...-+|-..|.+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F----------A~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF----------AQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH----------HHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
-..+| ..++|.+-++.+|++.|++...+|.+.
T Consensus 175 R~~Lg-----------~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 175 RESLG-----------NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHh-----------hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 99988 999999999999999999998887764
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.34 E-value=6.8e-06 Score=71.38 Aligned_cols=85 Identities=22% Similarity=0.223 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHH-HHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 31 DADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 31 d~~~l~~lG~al-~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
+....+..+..+ +..+++ ++|+..|++.++..|++ +.+++.||.+|+..| ++++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y----------~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-----------~~~~A 199 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQ----------DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-----------KKDDA 199 (263)
T ss_pred CHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-----------CHHHH
Confidence 457788888887 455677 99999999999999998 589999999999988 99999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 107 SECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
+.+|++++...|++. +.+++++.++..+..
T Consensus 200 ~~~f~~vv~~yP~s~----------~~~dAl~klg~~~~~ 229 (263)
T PRK10803 200 AYYFASVVKNYPKSP----------KAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHHHHHHCCCCc----------chhHHHHHHHHHHHH
Confidence 999999999999874 455555556555543
No 118
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.33 E-value=1e-06 Score=55.77 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
|+++..+|.++..+|++ ++|+..|+++++.+|++++++..||.
T Consensus 1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46899999999999999 99999999999999999999999985
No 119
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.32 E-value=1.6e-06 Score=51.02 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+.+++.+|.+|..+| ++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence 478999999999999 9999999999999999986
No 120
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6e-06 Score=75.84 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
|+|.+.+++++.++|....+-..++..+..-|+. +++|+.++++|.+-|+. ..|..||.++....
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~----------~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~N---- 485 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT----------KDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQN---- 485 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc----------chHHHHHHHHHhhcccc-HHHHHHHHHHHHhh----
Confidence 6788888888888888888888888888877777 89999999999888876 56788898888876
Q ss_pred ChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992 95 DLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (200)
Q Consensus 95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~ 129 (200)
.+.+|+.+|++|+++||++..-.+.++.
T Consensus 486 -------e~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 486 -------EPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred -------hHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 9999999999999999999987777743
No 121
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1e-05 Score=74.32 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+.|+.|+-..++++..+|++.+.+...|.+|+.+++. ++|+-.|+.|..+.|.+-+.|-.|-.+|...|+
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~----------~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH----------TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch----------HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 4688899999999999999999999999999999999 999999999999999999999999889988883
Q ss_pred cc-------------CChHHhhc------------CHHHHHHHHHHHHHhCCCCH---------------------HHHH
Q 028992 92 LT-------------ADLSEAKG------------DFDKASECFQRAVDEEPTNE---------------------LYQK 125 (200)
Q Consensus 92 l~-------------~~~~~a~~------------~~d~A~~~fqkAl~l~P~~~---------------------~y~k 125 (200)
+. |...++.. --|+|.+++++++.++|++. +.++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 21 11111111 12677777777777777775 4445
Q ss_pred HHHhCCCChHHHHHHHHHHHhccc
Q 028992 126 SLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 126 Ale~~~k~~e~~~~l~~~~~~~~~ 149 (200)
+|...++ -.+|..||..+..++.
T Consensus 464 ~L~~~~D-~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 464 HLIIFPD-VNLHNHLGDIMRAQNE 486 (564)
T ss_pred HHhhccc-cHHHHHHHHHHHHhhh
Confidence 5544433 4567777777665554
No 122
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.29 E-value=3e-05 Score=70.48 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=91.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~-~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
.+.+.++.|.+.++++.+..|++. .+....+.+++..+++ ++|...+++.++.+|+++.++..++.+|.
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~----------~~Al~~l~~l~~~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL----------HAARHGVDKLLEMAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 355677778888888777777764 4555567777777777 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHHhCC----CChHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVST----KAPELHM 138 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------------~y~kAle~~~----k~~e~~~ 138 (200)
..| ++++|.+.+++..+..+.++ ...++.+..| +.++++.
T Consensus 199 ~~~-----------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 199 RSG-----------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI 267 (409)
T ss_pred HHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence 988 99999999999987644332 1112233445 5889999
Q ss_pred HHHHHHHhcc
Q 028992 139 ELHKHGINQQ 148 (200)
Q Consensus 139 ~l~~~~~~~~ 148 (200)
.++..+..++
T Consensus 268 ~~a~~l~~~g 277 (409)
T TIGR00540 268 ALAEHLIDCD 277 (409)
T ss_pred HHHHHHHHCC
Confidence 9988776544
No 123
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.1e-06 Score=78.46 Aligned_cols=113 Identities=22% Similarity=0.297 Sum_probs=94.9
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------------H
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------------T 78 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------------a 78 (200)
++++.+|....-..+++|+.+.++++..|.++...... +.|+.+|+++|.+||++-+ .
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~----------~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA----------DKAINHFQQALRLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred cccchhHHHHHHHHHhcccchhHHHHhcccccccccch----------HHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence 56889999999999999999999999999999998887 9999999999999999765 3
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHHhCCCC
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVSTKA 133 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------------~y~kAle~~~k~ 133 (200)
+-.-||-.+..| ++.+|.+||..||.+||+|- .+..++.+++..
T Consensus 252 ~k~~gN~~fk~G-----------~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 252 KKERGNDAFKNG-----------NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHhhhhhHhhcc-----------chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 455677777777 99999999999999999996 455666777777
Q ss_pred hHHHHHHHHHH
Q 028992 134 PELHMELHKHG 144 (200)
Q Consensus 134 ~e~~~~l~~~~ 144 (200)
..+++.-++..
T Consensus 321 ikall~ra~c~ 331 (486)
T KOG0550|consen 321 IKALLRRANCH 331 (486)
T ss_pred HHHHHHHHHHH
Confidence 66666555433
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.27 E-value=2e-05 Score=67.49 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=92.8
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNL---TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGN 84 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l---~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~ 84 (200)
-+.|++|++.++......|..+.+. +++|.+++.++++ ++|+..|++.++++|+++ .+++.+|.
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y----------~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL----------PLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4789999999999999999987765 8999999999998 999999999999999875 67889999
Q ss_pred HHHhcC------cccCChH-HhhcCHHHHHHHHHHHHHhCCCCHHHHHHH----HhCCCChHHHHHHHHHHHh
Q 028992 85 AHTSCG------FLTADLS-EAKGDFDKASECFQRAVDEEPTNELYQKSL----EVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 85 a~~~~G------~l~~~~~-~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl----e~~~k~~e~~~~l~~~~~~ 146 (200)
++..++ ++..+.. .-.....+|+..|++.|+.-|++.....|- ++..+..+-.+.+++.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875544 1221111 112235689999999999999998554443 2333334444455554443
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.27 E-value=2.2e-06 Score=77.23 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=84.1
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTR----WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~----lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
+..-+-..|.++++..++.++.+|.-+.+.++ +..|+.+-+++ -+||..+.++|.++|++.+++..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~----------~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF----------GEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH----------HHHHHHHHHHHhcCchHHHHHHH
Confidence 33445568899999999999999996665544 44555555666 99999999999999999999999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
.+.+|..-. .||.||.-|++|.+.+|+|...|..++
T Consensus 347 RAeA~l~dE-----------~YD~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 347 RAEAYLGDE-----------MYDDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHhhhH-----------HHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 999998844 999999999999999999985555543
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=6.3e-06 Score=79.52 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
..|+++.+.++..+++||.-.+.|+++|.+.+.++++ +.|+..|.+++.++|++.++|.||..+|+.+|
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~----------q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~- 567 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE----------QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK- 567 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh----------HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-
Confidence 5799999999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.-.+|-.++++|+..+-++.
T Consensus 568 ----------~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 568 ----------KKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred ----------hhHHHHHHHHHHhhcCCCCC
Confidence 88999999999999885553
No 127
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.20 E-value=1.8e-05 Score=77.68 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=70.4
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
-.+.+++.++|+-+|.+|++.+|.+-+...+....|.++|+. ..|...|.+.+.++| ..+.-+++..+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~----------~~Am~~f~~l~~~~p-~~d~er~~d~i~ 284 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL----------KRAMETFLQLLQLDP-PVDIERIEDLIR 284 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH----------HHHHHHHHHHHhhCC-chhHHHHHHHHH
Confidence 356788899999999999999999999999999999998888 999999999999999 556666655554
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
.... .... .+.-+.|++.++.++.
T Consensus 285 ~~~~----~~~~-~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 285 RVAH----YFIT-HNERERAAKALEGALS 308 (895)
T ss_pred HHHH----HHHH-hhHHHHHHHHHHHHHh
Confidence 3211 0001 1144788888888777
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.3e-06 Score=75.95 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=84.6
Q ss_pred hhHHHHhchHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 5 QSDFDRLLLSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80 (200)
Q Consensus 5 ~~~~~~l~~fe~A~~~~e~a~~~~P~d~~----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~ 80 (200)
.++.=|-+.|-.|-+.|..++.++|++.. .+.|.+.+...+|+. .+||+-.++|++|||.--.++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl----------~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL----------REAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc----------hhhhhhhhhhhhcCHHHHHHHH
Confidence 45666778999999999999999999654 577888888888888 9999999999999999999999
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..|+||..++ .+++|++.|++|++.+-+
T Consensus 326 ~ra~c~l~le-----------~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 326 RRANCHLALE-----------KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHhhccc
Confidence 9999999988 999999999999988766
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=8.8e-06 Score=81.03 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=85.4
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc--------ccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD--------SKKIINEAISKFEEALVIDPAKHYTL 79 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~--------~~~~~~eAi~~le~AL~ldP~~~~a~ 79 (200)
+.+...+++|.+.++.+++.+|+....++.+|.+++..+++..+.- ....+ .+++.+-..+...|.+-.|+
T Consensus 41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLAL 119 (906)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHH
Confidence 3467789999999999999999999999999998888777654321 11122 66777776777778888999
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+.||.||-++| +.++|...|++++++||+|+
T Consensus 120 ~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~ 150 (906)
T PRK14720 120 RTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNP 150 (906)
T ss_pred HHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccH
Confidence 99999999999 99999999999999999998
No 130
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.17 E-value=1.3e-05 Score=75.66 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=77.5
Q ss_pred HHHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-------
Q 028992 7 DFDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------- 71 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------- 71 (200)
.+-..+.||.|...++.++.. +|.=...+..+|.+|..+++| .+|+..|++||.|
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~----------~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY----------DEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHhcCC
Confidence 345678999999999999998 777777777799999999999 9999999999977
Q ss_pred -CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 72 -DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 72 -dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
+|.-..++.+|+.+|...| +|++|..|+++|+++-
T Consensus 278 ~h~~va~~l~nLa~ly~~~G-----------Kf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQG-----------KFAEAEEYCERALEIY 313 (508)
T ss_pred CCHHHHHHHHHHHHHHhccC-----------ChHHHHHHHHHHHHHH
Confidence 5555578899999999999 9999999999998874
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.17 E-value=1.9e-05 Score=76.58 Aligned_cols=106 Identities=22% Similarity=0.123 Sum_probs=77.3
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+...-++++-+..++..++|..+..++..|..+...|++ +||.+.|..|+.+||+++.+...+|.+|...
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~----------~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL----------EEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 334456677777777777788787888888777777777 7888888888888888888877888887777
Q ss_pred CcccCChHHhhcCHHHHHH--HHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 90 GFLTADLSEAKGDFDKASE--CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~--~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
| +-.-|.+ ....|+++||.| +++|+.+|..+-.++.
T Consensus 732 G-----------~~~la~~~~~L~dalr~dp~n-------------~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 732 G-----------SPRLAEKRSLLSDALRLDPLN-------------HEAWYYLGEVFKKLGD 769 (799)
T ss_pred C-----------CcchHHHHHHHHHHHhhCCCC-------------HHHHHHHHHHHHHccc
Confidence 7 4444444 666666666654 8999999988876664
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.2e-05 Score=73.19 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=79.6
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+|..|.+|++.+.+++.++|+|..++++.|.|++.++++ +.|+..|++|++++|+|..+...|..+-...
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999 9999999999999999999998888776553
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+...++..+.|.+.+..-+..
T Consensus 339 ----------~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 339 ----------REYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred ----------HHHHHHHHHHHHHHhhccccc
Confidence 235666788888888765544
No 133
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.10 E-value=7.2e-05 Score=59.54 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=86.0
Q ss_pred HhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG 83 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG 83 (200)
+-+.|++|++.++......|. ...+...+|.+++..+++ ++|+..+++-++++|+++ .+++..|
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y----------~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY----------EEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 446899999999999988876 567899999999999998 999999999999999987 4778899
Q ss_pred HHHHhcC--cc--cCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 84 NAHTSCG--FL--TADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126 (200)
Q Consensus 84 ~a~~~~G--~l--~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA 126 (200)
.+++.+. +| .+....-.....+|...|++.|+.-|+++.-..|
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9988764 11 0133333445789999999999999998754443
No 134
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=98.10 E-value=0.00013 Score=57.92 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=79.4
Q ss_pred CCCChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-hCCCC-HHH
Q 028992 1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-IDPAK-HYT 78 (200)
Q Consensus 1 ~~~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~-~~a 78 (200)
|++...+.+-..-+-...+.+.+.-...--..++.++++.+|....+ ...+++.|.+|+..++ -.|.. -+.
T Consensus 1 ~~~~~~~p~a~~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~-------~~dv~~GI~iLe~l~~~~~~~~rRe~ 73 (149)
T KOG3364|consen 1 FSGSLKEPWAIEDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRD-------TEDVQEGIVILEDLLKSAHPERRREC 73 (149)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccc-------hHHHHHhHHHHHHHhhhcCcccchhh
Confidence 44555555555555556666666555555567888999999986433 4556999999999997 55553 478
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
+|.|+..+..++ +|++|+.|....++.+|+|..
T Consensus 74 lyYLAvg~yRlk-----------eY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 74 LYYLAVGHYRLK-----------EYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhHHHHHHHh-----------hHHHHHHHHHHHHhhCCCcHH
Confidence 899999999988 999999999999999999863
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.09 E-value=8.4e-06 Score=80.95 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc--------------------------ccccHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD--------------------------SKKIINEAISKFE 66 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~--------------------------~~~~~~eAi~~le 66 (200)
....|++.|.+|.++||.|+++....+..+.+....+.+.. -.+....||..|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 45679999999999999999999777777766444332110 1145699999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 67 ~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
-||+.||++...|-.||.+|...| ++.-|++.|.||..++|.+-
T Consensus 587 sALR~dPkD~n~W~gLGeAY~~sG-----------ry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 587 SALRTDPKDYNLWLGLGEAYPESG-----------RYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhcCCchhHHHHHHHHHHHHhcC-----------ceehHHHhhhhhHhcCcHhH
Confidence 999999999999999999999999 99999999999999999986
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.09 E-value=3.5e-05 Score=59.52 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
+.+++..|.++-.+|+. ++||..|++|+...++. ..+++.+|.+|..+| ++++|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~----------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDSLGRE----------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALA 59 (120)
T ss_pred CchHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHH
Confidence 35789999999999998 99999999999986555 578999999999999 9999999
Q ss_pred HHHHHHHhCCCCH
Q 028992 109 CFQRAVDEEPTNE 121 (200)
Q Consensus 109 ~fqkAl~l~P~~~ 121 (200)
.+++++...|+.+
T Consensus 60 ~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 60 LLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHCCCcc
Confidence 9999999989843
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.08 E-value=3.1e-05 Score=66.26 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
.+++.++..|..+...|++ ++|++.|++++...|..+.+. +.+|.+|...+ ++++|
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y----------~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-----------~y~~A 88 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNW----------KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLA 88 (243)
T ss_pred CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHH
Confidence 3788889999999998888 999999999999999998765 89999999988 99999
Q ss_pred HHHHHHHHHhCCCCH-----HHHHHH
Q 028992 107 SECFQRAVDEEPTNE-----LYQKSL 127 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~-----~y~kAl 127 (200)
+.+|++.++..|+++ .|.+++
T Consensus 89 ~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 89 QAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 999999999999986 555554
No 138
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.04 E-value=7e-06 Score=48.55 Aligned_cols=34 Identities=29% Similarity=0.604 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~ 75 (200)
+.+|+++|.++..++++ ++|+.+|++||++||++
T Consensus 1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence 57899999999999999 99999999999999974
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=4.9e-05 Score=70.62 Aligned_cols=98 Identities=20% Similarity=0.123 Sum_probs=78.6
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+....++|.+.+++++.++|+.+-.+.++|.+|+..|++ ++||..+++.+.-+|++++.|..|+.+|..+
T Consensus 352 ~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 352 EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 445789999999999999999999999999999999999 8999999999999999999999999999998
Q ss_pred Cc------ccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 90 GF------LTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 90 G~------l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
|- -+.+..-=.|++++|+....+|.+..
T Consensus 422 g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 422 GNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 81 01111122235555555555555443
No 140
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.99 E-value=1.5e-05 Score=46.75 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~ 75 (200)
+++++.+|.++..++++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence 57899999999999999 99999999999999986
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=1e-05 Score=57.33 Aligned_cols=54 Identities=26% Similarity=0.455 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 56 KIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+.+++|+..|+++++.+|+ +...++.+|.+|+..| +|++|+.++++ +..+|.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-----------~y~~A~~~~~~-~~~~~~~~ 58 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-----------KYEEAIELLQK-LKLDPSNP 58 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHC-HTHHHCHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-----------CHHHHHHHHHH-hCCCCCCH
Confidence 4569999999999999996 4667788999999999 99999999999 77877663
No 142
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=2.7e-05 Score=49.15 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
|+++..+|.+|..+| ++++|+++|+++++.+|+|...+..+
T Consensus 1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 468899999999999 99999999999999999997655444
No 143
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.95 E-value=0.00011 Score=60.86 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=78.8
Q ss_pred HhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG 83 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG 83 (200)
+.+.|++|++.++......|. -+++++.+|.++...+++ ++|+..|++-++..|+++ .+++.+|
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y----------~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY----------EEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 456899999999999998876 567899999999999998 999999999999999976 5889999
Q ss_pred HHHHhcCcccCCh---HHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 84 NAHTSCGFLTADL---SEAKGDFDKASECFQRAVDEEPTNELYQKS 126 (200)
Q Consensus 84 ~a~~~~G~l~~~~---~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA 126 (200)
.++..+. ++. ..-.....+|+..|+..++.-|++.....|
T Consensus 87 ~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A 129 (203)
T PF13525_consen 87 LSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA 129 (203)
T ss_dssp HHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred HHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence 9987643 111 222336789999999999999999844433
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.00011 Score=73.48 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCCh
Q 028992 17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL 96 (200)
Q Consensus 17 A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~ 96 (200)
+.+.+-..+-..|++-.+++.+|.||-.+|+. ++|+..++++|++||+++.++.++|..|..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------- 162 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNEN----------KKLKGVWERLVKADRDNPEIVKKLATSYEE-------- 162 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------
Confidence 44455555555677779999999999999998 999999999999999999999999999987
Q ss_pred HHhhcCHHHHHHHHHHHHHhCCCCHH-------HHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 97 SEAKGDFDKASECFQRAVDEEPTNEL-------YQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 97 ~~a~~~~d~A~~~fqkAl~l~P~~~~-------y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
. ++++|++++++|+...=+... ..+-++.+|...+....+-+....+-
T Consensus 163 ---~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 163 ---E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred ---h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 3 899999999999988655544 44555678888888888888777543
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.95 E-value=1.8e-05 Score=69.51 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=58.1
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE--LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~--l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
++.+++.|.+.++..-+.+.+ .++++++.+++. .|. ..+++|...|++.....|..+..+..++.++.
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g~--------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATGG--------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHTT--------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 566778888877776666544 345555555544 332 11277777777766666677777777777777
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+| +|++|...+++|++.+|+++
T Consensus 213 ~~~-----------~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 213 QLG-----------HYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HCT------------HHHHHHHHHHHCCC-CCHH
T ss_pred HhC-----------CHHHHHHHHHHHHHhccCCH
Confidence 777 77777777777777777776
No 146
>PRK15331 chaperone protein SicA; Provisional
Probab=97.95 E-value=0.0002 Score=58.36 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=70.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992 24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDF 103 (200)
Q Consensus 24 a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~ 103 (200)
...+.++..+..+..|.-+...|++ ++|...|+-...+||.+++.+..||.++..++ +|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~----------~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-----------~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRL----------DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-----------QF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-----------HH
Confidence 4456777888899999999998888 99999999999999999999999999999987 99
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 028992 104 DKASECFQRAVDEEPTNE 121 (200)
Q Consensus 104 d~A~~~fqkAl~l~P~~~ 121 (200)
++|+.+|-.|..++++++
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHHHHHHHHHcccCCC
Confidence 999999999999999887
No 147
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.00024 Score=61.83 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=85.9
Q ss_pred HhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWSLG 83 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---~~~a~~~LG 83 (200)
+-+.|..|...|..-+...|+ -++++++||.+++.+|++ ++|...|..+.+-.|+ -|++++.||
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y----------~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY----------EDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc----------hHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 345688999999998898888 468999999999999999 9999999999998776 469999999
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
.++..+| +-|+|-..|++.++.-|+.+.-+++-
T Consensus 223 ~~~~~l~-----------~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 223 VSLGRLG-----------NTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHhc-----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999998 99999999999999999998655543
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.0002 Score=65.68 Aligned_cols=86 Identities=21% Similarity=0.138 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
..++.|+..+++..+.+|+ +...++.+++..++- .+|+..++++|+.+|.+.+.+..-+..+...+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E----------~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~- 248 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE----------VEAIRLLNEALKENPQDSELLNLQAEFLLSKK- 248 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-
Confidence 4789999999999888875 666788888876665 89999999999999999999999999999977
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+++.|+++.++|+.+.|++.
T Consensus 249 ----------~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 249 ----------KYELALEIAKKAVELSPSEF 268 (395)
T ss_pred ----------CHHHHHHHHHHHHHhCchhH
Confidence 99999999999999999986
No 149
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.93 E-value=1.8e-05 Score=46.55 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.+|+.+|.+|..+| ++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~-----------~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-----------DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-----------SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCC
Confidence 57899999999999 9999999999999999965
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00011 Score=67.34 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
-.+|++...+++..+|.|++.+...+..|+..+++ +.|+.+.++|..+.|++...|+.|+.+|..+|
T Consensus 216 E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~--- 282 (395)
T PF09295_consen 216 EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY----------ELALEIAKKAVELSPSEFETWYQLAECYIQLG--- 282 (395)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC---
Confidence 46889999999999999999999999999998888 99999999999999999999999999999999
Q ss_pred CChHHhhcCHHHHHHHHH
Q 028992 94 ADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fq 111 (200)
+|++|+....
T Consensus 283 --------d~e~ALlaLN 292 (395)
T PF09295_consen 283 --------DFENALLALN 292 (395)
T ss_pred --------CHHHHHHHHh
Confidence 9999996655
No 151
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.00028 Score=56.26 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHh
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----YTLWSLGNAHTS 88 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----~a~~~LG~a~~~ 88 (200)
..+.|++.+.+++.+-|..+.+++|.+.++...++. ++|+.-+++|+++.-... .++...|.+|..
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~----------e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDD----------EEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999888887 899999999998865443 467788999998
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCC
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVST 131 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~ 131 (200)
+| +.|+|..-|+.|-++-..++. ++-+++||
T Consensus 128 ~g-----------~dd~AR~DFe~AA~LGS~FAr-~QLV~lNP 158 (175)
T KOG4555|consen 128 LG-----------NDDAARADFEAAAQLGSKFAR-EQLVELNP 158 (175)
T ss_pred hC-----------chHHHHHhHHHHHHhCCHHHH-HHHHhcCh
Confidence 88 888898888888888655432 34445665
No 152
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.87 E-value=3.4e-05 Score=71.50 Aligned_cols=55 Identities=9% Similarity=-0.136 Sum_probs=51.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADN---LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~---l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
+-+++.|++|+..++++++++|+++++ |+|+|.+|..+|++ ++|+++|++|+++.
T Consensus 85 L~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----------dEAla~LrrALels 142 (453)
T PLN03098 85 LFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG----------KKAADCLRTALRDY 142 (453)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence 456889999999999999999999976 99999999999998 99999999999983
No 153
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.86 E-value=1.7e-05 Score=47.88 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992 21 AEANYAKDPLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 21 ~e~a~~~~P~d~~~l~~lG~al~~l~~~ 48 (200)
|+++++++|+|+++|+++|.+|...|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 6889999999999999999999999998
No 154
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.81 E-value=2.4e-05 Score=72.62 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
..|+.|...|.+|++++|+++..+-+.+.+++..+.| ..|+.-+.+|++++|...-+|+-.|.+...++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~----------~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~- 86 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF----------GGALHDALKAIELDPTYIKAYVRRGTAVMALG- 86 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechh----------hhHHHHHHhhhhcCchhhheeeeccHHHHhHH-
Confidence 4799999999999999999999999999999999998 99999999999999999999999999999998
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
.|.+|..-|++...+.|+....++.+.
T Consensus 87 ----------~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 ----------EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred ----------HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 999999999999999999986666553
No 155
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.79 E-value=1.1e-05 Score=72.24 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
++|..|++.+-.++.++|..+..+.+.+.+++++++. ..||.-+..|++|||+...-|-..|.++..+|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp----------~~airD~d~A~ein~Dsa~~ykfrg~A~rllg- 196 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP----------NAAIRDCDFAIEINPDSAKGYKFRGYAERLLG- 196 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCC----------chhhhhhhhhhccCcccccccchhhHHHHHhh-
Confidence 5799999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++++|.+++..|++++=+-+
T Consensus 197 ----------~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 197 ----------NWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred ----------chHHHHHHHHHHHhccccHH
Confidence 99999999999998864443
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.00016 Score=61.93 Aligned_cols=59 Identities=32% Similarity=0.406 Sum_probs=54.7
Q ss_pred ccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 52 SDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 52 ~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.||.|...-|.--|.++|.|+|+-++++..||.-++.-| +||.|.+.|.-.+++||.++
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-----------~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-----------cchHHHHHhhhHhccCCcch
Confidence 356666688999999999999999999999999999988 99999999999999999997
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.00015 Score=70.17 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---------cCCccc---------ccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 16 HNRKTAEANYAKDPLDADNLTRWGEALLEL---------SQFESV---------SDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 16 ~A~~~~e~a~~~~P~d~~~l~~lG~al~~l---------~~~~~~---------~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
+|-+...+.++ +|+|+-.+..+|.++... ++..++ .-+.+.++++..+|+..++++|-..+
T Consensus 442 kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 442 KAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG 520 (777)
T ss_pred hHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence 33344444445 688899998888876542 221111 12335689999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHH
Q 028992 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPEL 136 (200)
Q Consensus 78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~ 136 (200)
.|+.+|.+..+++ ++..|.++|.+++.++|++. ....|+.-+.+..+.
T Consensus 521 ~wf~~G~~ALqle-----------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 521 TWFGLGCAALQLE-----------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HHHhccHHHHHHh-----------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence 9999999999988 99999999999999999997 444555555555555
Q ss_pred HHHHH
Q 028992 137 HMELH 141 (200)
Q Consensus 137 ~~~l~ 141 (200)
+.|..
T Consensus 590 WENym 594 (777)
T KOG1128|consen 590 WENYM 594 (777)
T ss_pred eechh
Confidence 55554
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.00078 Score=52.46 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNA 85 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a 85 (200)
.....+.+.++.....+|+. ..+...+|.++...|++ ++|+..|++++...|+. +.+.+.|+.+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------DEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 45566677788888899998 67788899999999998 99999999999988665 4578889999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
+...| +|++|+..++.
T Consensus 95 ~~~~~-----------~~d~Al~~L~~ 110 (145)
T PF09976_consen 95 LLQQG-----------QYDEALATLQQ 110 (145)
T ss_pred HHHcC-----------CHHHHHHHHHh
Confidence 99988 99999999966
No 159
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.73 E-value=0.00036 Score=55.58 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
.+..+++-|...+..|++ ++|+..|+.....-|-.+ .+...||.+|+..| ++++|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y----------~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-----------~y~~A~ 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNY----------EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-----------DYEEAI 67 (142)
T ss_pred CHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-----------CHHHHH
Confidence 567889999999998888 999999999999988754 68889999999988 999999
Q ss_pred HHHHHHHHhCCCCH-----HHHHHHH
Q 028992 108 ECFQRAVDEEPTNE-----LYQKSLE 128 (200)
Q Consensus 108 ~~fqkAl~l~P~~~-----~y~kAle 128 (200)
..+++-++++|+++ .|+++|.
T Consensus 68 a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 68 AAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 99999999999997 7777764
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.73 E-value=0.00025 Score=58.72 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
+++.++..|..++..|++ .+|+..|++.+...|.. +++.+.+|.++...| ++++|+
T Consensus 4 ~~~~lY~~a~~~~~~g~y----------~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-----------~y~~A~ 62 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDY----------EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-----------DYEEAI 62 (203)
T ss_dssp -HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-----------CHHHHH
Confidence 678899999999999998 99999999999998875 478999999999988 999999
Q ss_pred HHHHHHHHhCCCCH
Q 028992 108 ECFQRAVDEEPTNE 121 (200)
Q Consensus 108 ~~fqkAl~l~P~~~ 121 (200)
..|++-++..|+++
T Consensus 63 ~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 63 AAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHH-TT-T
T ss_pred HHHHHHHHHCCCCc
Confidence 99999999999986
No 161
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.00029 Score=63.14 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=68.3
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
-...++|++.+++..++.|.+-.+ .++-.|+++.+- ....+..+.|+..+++|++-||+...+-..+|.++...|
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~---~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g 228 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQ---ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKG 228 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence 345677777777777777765432 344444444331 111233478888899999999999888888999888877
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|.+|++.++++++.||++-
T Consensus 229 -----------~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 229 -----------DYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred -----------chHHHHHHHHHHHHhChHHH
Confidence 99999999999999988874
No 162
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00031 Score=65.65 Aligned_cols=89 Identities=17% Similarity=0.077 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+.+++|.+.|.+++.-+....++++|+|..+-.+|+. ++|+.||-+.-.|--++.++++.++++|..+.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l----------deald~f~klh~il~nn~evl~qianiye~le- 572 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL----------DEALDCFLKLHAILLNNAEVLVQIANIYELLE- 572 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-
Confidence 3577888888888888888888888888888888877 88888888877777788888888888888866
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+...|++++-++..+=|+++
T Consensus 573 ----------d~aqaie~~~q~~slip~dp 592 (840)
T KOG2003|consen 573 ----------DPAQAIELLMQANSLIPNDP 592 (840)
T ss_pred ----------CHHHHHHHHHHhcccCCCCH
Confidence 88888888888888888887
No 163
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.69 E-value=0.0032 Score=47.00 Aligned_cols=120 Identities=24% Similarity=0.303 Sum_probs=87.3
Q ss_pred HHHHhchHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYA--KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~--~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
.+.....+..+...+..... ..+.....+..+|..+...+++ .+++..++.++..++.........+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY----------EEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 34455667777777777776 7888888888888888887776 88888888888888887666666666
Q ss_pred -HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--C-H---------------------HHHHHHHhCCC-ChHHHH
Q 028992 85 -AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--N-E---------------------LYQKSLEVSTK-APELHM 138 (200)
Q Consensus 85 -a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~-~---------------------~y~kAle~~~k-~~e~~~ 138 (200)
++...| ++++|+.+|++++..+|. . . .+.+++...+. ....+.
T Consensus 138 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 138 GALYELG-----------DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHHcC-----------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 787877 888888888888887773 1 1 45555566666 466666
Q ss_pred HHHHHHHhc
Q 028992 139 ELHKHGINQ 147 (200)
Q Consensus 139 ~l~~~~~~~ 147 (200)
.++..+..+
T Consensus 207 ~~~~~~~~~ 215 (291)
T COG0457 207 NLGLLYLKL 215 (291)
T ss_pred HhhHHHHHc
Confidence 666655543
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00094 Score=59.93 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGF 91 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-~a~~~LG~a~~~~G~ 91 (200)
.++.|+...++|+..||++..+-+.+|.+....|+| +.|++.++.+++.||... ++.-.|-.||..+|
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg- 263 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLG- 263 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC-
Confidence 567799999999999999999999999999999999 999999999999999965 67778999999999
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHh
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLEV 129 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAle~ 129 (200)
+.++.+.+..++.+..++.+ .|+...+.
T Consensus 264 ----------~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~ 295 (389)
T COG2956 264 ----------KPAEGLNFLRRAMETNTGADAELMLADLIELQ 295 (389)
T ss_pred ----------CHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence 99999999999999998876 55555544
No 165
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.63 E-value=9.8e-05 Score=66.85 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
--.|+-|+.+|.| +|||.||-+++.++|.++-.+.|.+.+|+.+. .|..|..-+..|+.
T Consensus 101 KE~GN~yFKQgKy----------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-----------~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 101 KERGNTYFKQGKY----------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-----------SFAQAEEDCEAAIA 159 (536)
T ss_pred HHhhhhhhhccch----------hHHHHHhhhhhccCCCCccchhhHHHHHHHHH-----------HHHHHHHhHHHHHH
Confidence 4567888888888 99999999999999999999999999999987 88888888888888
Q ss_pred hCCCCH---------------------HHHHHHHhCCCChHHHHHHHH
Q 028992 116 EEPTNE---------------------LYQKSLEVSTKAPELHMELHK 142 (200)
Q Consensus 116 l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~ 142 (200)
+|-.+. .|+.+|++.|+..|+.-.++.
T Consensus 160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 876654 788899999999888877764
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.62 E-value=0.0013 Score=49.12 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=68.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDP---LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-KHYTLWSLG 83 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P---~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-~~~a~~~LG 83 (200)
+..++.++.|...+++++..+| .........+..+...+++ ++|+..+.+++...|. ...++..++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKALKLNPDDDAEALLNLG 209 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHHHhhCcccchHHHHHhh
Confidence 3456677788888888777666 3555555555555555555 8888888888888888 688888888
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..+...+ ++++|+.++.+++...|+
T Consensus 210 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 210 LLYLKLG-----------KYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence 8888877 888888888888888887
No 167
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00068 Score=59.02 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
+++..++.+..++..|+| .+|...|..=++.-|+. ++++|.||.+++.+| +|++|.
T Consensus 140 ~~~~~Y~~A~~~~ksgdy----------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-----------~y~~Aa 198 (262)
T COG1729 140 PATKLYNAALDLYKSGDY----------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-----------DYEDAA 198 (262)
T ss_pred chhHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-----------cchHHH
Confidence 345589999999998888 99999999999999985 589999999999999 999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 108 ECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 108 ~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
..|.++++-.|++ ||+|+..+.|+..+...+
T Consensus 199 ~~f~~~~k~~P~s----------~KApdallKlg~~~~~l~ 229 (262)
T COG1729 199 YIFARVVKDYPKS----------PKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHHHHHhCCCC----------CCChHHHHHHHHHHHHhc
Confidence 9999999999985 789999999998775433
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.55 E-value=0.00042 Score=66.49 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-.|+.-++|.+....++..|+...-+|+-+|.++..-..+ ++||.||+.||+++|+|-..|..|+.....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999876666 999999999999999999999999998888
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++ +++-....-.+-++++|++-
T Consensus 122 mR-----------d~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 122 MR-----------DYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HH-----------hhhhHHHHHHHHHHhhhhhH
Confidence 77 77777777777778887775
No 169
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.53 E-value=0.00048 Score=54.89 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
.+..-|+++.+.|+. +.|++.|.+||.+-|..+.+|.|.+.++..+| +.++|++-+.+|
T Consensus 45 ~LEl~~valaE~g~L----------d~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~A 103 (175)
T KOG4555|consen 45 ELELKAIALAEAGDL----------DGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKA 103 (175)
T ss_pred HHHHHHHHHHhccch----------HHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHH
Confidence 345678888888887 99999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCH
Q 028992 114 VDEEPTNE 121 (200)
Q Consensus 114 l~l~P~~~ 121 (200)
+++.-+-.
T Consensus 104 leLag~~t 111 (175)
T KOG4555|consen 104 LELAGDQT 111 (175)
T ss_pred HHhcCccc
Confidence 99976543
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.50 E-value=0.00056 Score=60.11 Aligned_cols=96 Identities=22% Similarity=0.145 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.+.+|.-.|++.....|.++..++.++.+++.+|++ ++|.+.+++|+..||++++++.|+..+...+|
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g-- 249 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPNDPDTLANLIVCSLHLG-- 249 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC--
Confidence 367888899998888889999999999999999999 99999999999999999999999999999988
Q ss_pred cCChHHhhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992 93 TADLSEAKGDF-DKASECFQRAVDEEPTNELYQKSLEV 129 (200)
Q Consensus 93 ~~~~~~a~~~~-d~A~~~fqkAl~l~P~~~~y~kAle~ 129 (200)
.- +.+.+++.+.-..+|+++....--+.
T Consensus 250 ---------k~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 250 ---------KPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp ----------TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred ---------CChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66 67888999999999999865544433
No 171
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.50 E-value=0.00018 Score=43.56 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH--HhCCCC
Q 028992 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV--DEEPTN 120 (200)
Q Consensus 78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl--~l~P~~ 120 (200)
+|.+||++|..+| +|++|+.+|++++ ..+|++
T Consensus 1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT------------HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcccccC
Confidence 5789999999999 9999999999955 545543
No 172
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.48 E-value=0.00043 Score=65.40 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=70.0
Q ss_pred HhchHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--------C
Q 028992 10 RLLLSEHNRKTAEANYA--------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--------P 73 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~--------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--------P 73 (200)
.+..|.+|.-.|++|+. .+|.-+.++.+||.+|...|+| .||..++++|++|- |
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf----------~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKF----------AEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHHHHHhhccChH
Confidence 35577888888888874 5688888999999999999999 88888888888772 2
Q ss_pred CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 74 AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 74 ~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.-+..+.+++.++...+ .+++|+.++++++++
T Consensus 323 ~v~~~l~~~~~~~~~~~-----------~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMN-----------EYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHH
Confidence 23345667888888877 999999999999986
No 173
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0013 Score=57.28 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=82.2
Q ss_pred hHHHHhchHHHHHHHHHHHHh--------hCCCCHH----------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYA--------KDPLDAD----------NLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~--------~~P~d~~----------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~ 67 (200)
+.+=|++.|++|...|..|+- ..|.+++ .+.|.+.|++..+.| =++++...+
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~----------yevleh~se 255 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY----------YEVLEHCSE 255 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH----------HHHHHHHHH
Confidence 345577899999999988873 4577765 457888888888887 999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.|..+|.+.-||+-.|.++..-= +.++|..-|+++++++|.-.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~W-----------n~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVW-----------NEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHhcChhhH
Confidence 99999999999999999998877 99999999999999999765
No 174
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.42 E-value=0.0016 Score=63.12 Aligned_cols=36 Identities=11% Similarity=-0.035 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~ 48 (200)
.+|+|++.++++++..|+....|..+|.++-.+++.
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 556666666666666666666666666666554443
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0013 Score=55.85 Aligned_cols=89 Identities=28% Similarity=0.341 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-----TLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-----a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
++-+-.-|+-++..|.| ++|.+.|.+||.+-|.-+. .|-|.|.+..+++ ..+.|
T Consensus 95 ad~lK~EGN~~F~ngdy----------eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------k~e~a 153 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDY----------EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------KWESA 153 (271)
T ss_pred HHHHHHHHHHhhhcccH----------HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------hHHHH
Confidence 34455667888887777 9999999999999998664 4557888999988 99999
Q ss_pred HHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992 107 SECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
+.-..+||+++|.+. -|++.++..|.--++.-.+.
T Consensus 154 I~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 154 IEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999775 55556666666655554444
No 176
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.41 E-value=0.00062 Score=65.14 Aligned_cols=96 Identities=23% Similarity=0.265 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 13 LSEHNRKTAEANYAKDPLDAD-NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~-~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
.-..|.++...|+...|...+ .+.+++.+++..+-. .+|...+.++|.|+-..|-.++.+|++|..+.
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~----------~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~- 690 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH----------LDATKLLLQALAINSSEPLTFLSLGNAYLALK- 690 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh----------ccHHHHHHHHHhhcccCchHHHhcchhHHHHh-
Confidence 345788999999999998554 578999999987665 99999999999999999999999999999988
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~ 129 (200)
+.++|++.|+.|++++|++..++..|.+
T Consensus 691 ----------~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 691 ----------NISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred ----------hhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999999988887754
No 177
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.40 E-value=0.00024 Score=38.69 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.+++++|.++...| ++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLG-----------DYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHh-----------hHHHHHHHHHHHHccCCCC
Confidence 57899999999988 9999999999999999864
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.37 E-value=0.0017 Score=61.64 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=80.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+++++.+++|++..+++++..|..++.+...|.+|-..|++ ++|.+.+++|-.+|+.|-..--..+..+.
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999887777777777
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
..| +.++|.+.+..-.+.+
T Consensus 274 Ra~-----------~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAG-----------RIEEAEKTASLFTRED 292 (517)
T ss_pred HCC-----------CHHHHHHHHHhhcCCC
Confidence 877 8888888777765554
No 179
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.36 E-value=0.00035 Score=40.32 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
++++.+|.++...| ++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g-----------~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLG-----------DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCcCC
Confidence 58999999999988 9999999999999999985
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.0063 Score=51.26 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCccc
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-IDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
+...+.+.+.++..|. ..+++++|+++.++|++ .||+..|++++. +--+++..+..++++.+..+
T Consensus 73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~----------~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~--- 138 (251)
T COG4700 73 ERHLREATEELAIAPT-VQNRYRLANALAELGRY----------HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ--- 138 (251)
T ss_pred hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhh----------hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc---
Confidence 3344444555555565 46788888888888888 888888888874 56677777777888888777
Q ss_pred CChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHHHHHHhcccc
Q 028992 94 ADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~~ 150 (200)
++..|...+++..+.+|..- .++.++...| .|+...-++.-++.|+-.
T Consensus 139 --------~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 139 --------EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred --------cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence 77777777777777766553 3333333332 256666666666665532
Q ss_pred CCCCCcch-hhhhcccccchhhh--hhhHHHHHHHHH
Q 028992 151 GGGSSASS-AQSSKKKSSDLKYD--IFGWAILAVGIV 184 (200)
Q Consensus 151 ~~~~~~~~-~~~~~~~~~~~~y~--~~g~~~l~~~~~ 184 (200)
.++-..+ ...+.-+.+--||- .-+|+=.+.+-+
T Consensus 210 -~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~ 245 (251)
T COG4700 210 -REANAQYVAVVDTAKRSRPHYRKHHREWIKTANERL 245 (251)
T ss_pred -hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 2333333 12222222333443 788888877644
No 181
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.36 E-value=0.0044 Score=60.11 Aligned_cols=120 Identities=14% Similarity=0.071 Sum_probs=103.2
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
=+|++...|.||+.|..-++..|+.+-.|..++..--..|+. ..|...|+++..-||+++..|...-..-
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~----------~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL----------VRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch----------hhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 368899999999999999999999999999999888777766 9999999999999999999888777777
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
...| +.+.|....-+||+.=|++. ....||..+..+|-....+++.+-++
T Consensus 764 lR~g-----------n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 764 LRAG-----------NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 7888 99999999999999999997 45566667777777777777666543
No 182
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.35 E-value=0.00031 Score=41.17 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~ 75 (200)
+++++.+|.++..+|++ ++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 36799999999999998 99999999999999953
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.31 E-value=0.0018 Score=64.12 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
..|.+|+....+.++++|+-.-+...-|..+.++|+. ++|..+++..-..-+++...+--+-++|..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~----------~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~- 91 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG----------DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG- 91 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc----------hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-
Confidence 3799999999999999999999999999999999999 99999999888888999999999999999988
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+|+|..+|++++..+|+.+
T Consensus 92 ----------~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 92 ----------KLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred ----------hhhHHHHHHHHHHhhCCcHH
Confidence 99999999999999999954
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.27 E-value=0.00037 Score=48.22 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=44.9
Q ss_pred HHHhchHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 8 FDRLLLSEHNRKTAEANYAK---D----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~---~----P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
+.+++.|++|++.+++++.+ . |.-+.++.++|.++..+|++ ++|+..|++|+++.
T Consensus 15 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 15 YRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALEYYQKALDIF 76 (78)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhh
Confidence 45788999999999999864 1 23366889999999999998 99999999999873
No 185
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.25 E-value=0.0061 Score=57.38 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcccCChHHhhcCHHH------HH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDK------AS 107 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~------A~ 107 (200)
.++|.++.++|+. +|||..+++.++.+|. +-.++.+|-.++...+.. .|...-...||+ |.
T Consensus 263 rRLAmCarklGr~----------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-ad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 263 RRLAMCARKLGRL----------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-ADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred HHHHHHHHHhCCh----------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-HHHHHHHHHhccccCCchHH
Confidence 4555566665555 9999999999998886 456899999999887710 111111112332 55
Q ss_pred HHHHHHHHh--------CCCC--------------HHHHHHHHhCCCChHHHHH
Q 028992 108 ECFQRAVDE--------EPTN--------------ELYQKSLEVSTKAPELHME 139 (200)
Q Consensus 108 ~~fqkAl~l--------~P~~--------------~~y~kAle~~~k~~e~~~~ 139 (200)
=||.+|+-. .|+. +..++|++.||..|....+
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 566666521 1222 2577777777777765544
No 186
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0034 Score=56.55 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=81.1
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
+++=+.+.|..|++.|.+.++.+-.|++ .++|.+.|.+.+++| ..||.-..+|+.++|++.-++|-
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny----------Rs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY----------RSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHhcCcchhhhhhh
Confidence 4556778999999999999998766554 678999999999998 99999999999999999999999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
-+.|+..+. +|++|+.+.+..+..+-+.
T Consensus 159 ~Akc~~eLe-----------~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELE-----------RFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHH-----------HHHHHHHHHhhhhhhhHHH
Confidence 999999977 9888888888877765443
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0046 Score=53.77 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=74.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.|..-.+.||+.++++.+..+...+++...|..-...++- .+.|...||.+++.-|.+.+.|.....-+.
T Consensus 11 ~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d---------~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 11 MRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD---------PKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS----------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45666789999999999977777888887776665553332 155999999999999999999999888888
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..+ +.+.|-..|++++..-|...
T Consensus 82 ~~~-----------d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 82 KLN-----------DINNARALFERAISSLPKEK 104 (280)
T ss_dssp HTT------------HHHHHHHHHHHCCTSSCHH
T ss_pred HhC-----------cHHHHHHHHHHHHHhcCchh
Confidence 888 99999999999998766554
No 188
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0029 Score=48.90 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
++..++..+...|++ ++|+..+++++.+||-+-.+|..+-.+|...| +..+|+..|++.
T Consensus 64 ~~~~l~~~~~~~~~~----------~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g-----------~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDY----------EEALRLLQRALALDPYDEEAYRLLMRALAAQG-----------RRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHH
Confidence 334555555566666 99999999999999999999999999999999 888888877776
Q ss_pred H
Q 028992 114 V 114 (200)
Q Consensus 114 l 114 (200)
.
T Consensus 123 ~ 123 (146)
T PF03704_consen 123 R 123 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.0077 Score=50.75 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=80.6
Q ss_pred HHHHhchHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLG 83 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG 83 (200)
..-+++++.+|+..|++++. +--+|+..+..++.+++.++++ -+|...++...+-+|. .++.+..+|
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~----------A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF----------AAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 44578889999999988886 6788899999999999999888 8899999999998886 577888889
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+|..+| .+++|...|+.++..-|+..
T Consensus 168 R~laa~g-----------~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 168 RTLAAQG-----------KYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHhcC-----------CchhHHHHHHHHHHhCCCHH
Confidence 9998888 99999999999999888754
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0019 Score=58.94 Aligned_cols=101 Identities=15% Similarity=0.064 Sum_probs=85.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------------------
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------------------ 53 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------------------ 53 (200)
+|+.|++|+..|+.+...+--+++.+.+++.+.+.+|++..+..
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 78899999999999999988899999999999999988754210
Q ss_pred -c-------------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 54 -S-------------KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 54 -~-------------~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
+ ..-++|||..|.+.|.-+|+--..-.+++.||.++. .++-+.+..+-=++.-|+
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-----------Yydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-----------YYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-----------hhhhHHHHHHHHHHhCCC
Confidence 0 012799999999999999999888889999999987 788888888877888888
Q ss_pred CH
Q 028992 120 NE 121 (200)
Q Consensus 120 ~~ 121 (200)
+.
T Consensus 218 St 219 (557)
T KOG3785|consen 218 ST 219 (557)
T ss_pred cH
Confidence 76
No 191
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.11 E-value=0.0038 Score=56.99 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
..+.-++.+++.++.+|+++..+..+|..+++.+.+ .+|-+.|+.|++.-|+..+ +..+|.++-.+|
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w----------~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g-- 375 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW----------GKASEALEAALKLRPSASD-YAELADALDQLG-- 375 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhcCCChhh-HHHHHHHHHHcC--
Confidence 455667788888999999999999999999998888 9999999999999998755 567899999999
Q ss_pred cCChHHhhcCHHHHHHHHHHHHH
Q 028992 93 TADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
+..+|.++++.++.
T Consensus 376 ---------~~~~A~~~r~e~L~ 389 (400)
T COG3071 376 ---------EPEEAEQVRREALL 389 (400)
T ss_pred ---------ChHHHHHHHHHHHH
Confidence 99999999999884
No 192
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.05 E-value=0.0044 Score=58.77 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
+++.+.-...++.+.|++ ++|+.+|++....-++...++-..|.+|..+| ++++|...|
T Consensus 3 ~SE~lLY~~~il~e~g~~----------~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----------~~~eA~~~y 61 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDY----------EEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----------RKEEAEKIY 61 (517)
T ss_pred HHHHHHHHHHHHHHCCCH----------HHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence 456777778888888887 99999999999999999999999999999999 999999999
Q ss_pred HHHHHhCCCCHHHHHHHHh
Q 028992 111 QRAVDEEPTNELYQKSLEV 129 (200)
Q Consensus 111 qkAl~l~P~~~~y~kAle~ 129 (200)
+..|+.||+|..|...|+.
T Consensus 62 ~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 62 RELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCcHHHHHHHHH
Confidence 9999999999977766643
No 193
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.03 E-value=0.0063 Score=44.57 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.-.++.++++++-||+++++.+.++.++...| ++++|++.+-..++.+|++.
T Consensus 5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g-----------~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 5 APDIAALEAALAANPDDLDARYALADALLAAG-----------DYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHCC-TTCC
T ss_pred cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCcccc
Confidence 34577899999999999999999999999988 99999999999999999883
No 194
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.002 Score=55.71 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH---HH-HHHHhCC
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL---YQ-KSLEVST 131 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~---y~-kAle~~~ 131 (200)
+.+.+||.+|-+||.++|..+..+-|.+.+|++.. +++.+..-.++|++++|+... +. ..+-...
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-----------~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-----------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-----------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44699999999999999999999999999999987 999999999999999999872 22 3334567
Q ss_pred CChHHHHHHHHHH--Hhccc-cCCCCCcch
Q 028992 132 KAPELHMELHKHG--INQQT-LGGGSSASS 158 (200)
Q Consensus 132 k~~e~~~~l~~~~--~~~~~-~~~~~~~~~ 158 (200)
+.+++-..|.+++ .-++- ..+..++..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~ 122 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKA 122 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 8899999999884 33332 234455554
No 195
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.94 E-value=0.0015 Score=35.40 Aligned_cols=33 Identities=36% Similarity=0.694 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~ 75 (200)
..+.++|.++..++++ ++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence 5788999999999999 99999999999999964
No 196
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.92 E-value=0.02 Score=50.83 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcc--cccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCCh
Q 028992 19 KTAEANYAKDPLDADNLTRWGEALLELSQFES--VSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL 96 (200)
Q Consensus 19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~--~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~ 96 (200)
..+++.+..+|+|.+.|..+..-.-.+-..+. ..+.....+.-++.|++||+.||++...+..+=.+....-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~------ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW------ 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------
Confidence 55778889999999999999887777655444 2344556788999999999999999888777666666655
Q ss_pred HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 97 SEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 97 ~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+-++-.+-+++++..+|++.
T Consensus 80 -----~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 80 -----DSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred -----CHHHHHHHHHHHHHHCCCCh
Confidence 78888899999999999887
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.0017 Score=60.16 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=61.8
Q ss_pred hchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH----HhCCCCHHHH-
Q 028992 11 LLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL----VIDPAKHYTL- 79 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL----~ldP~~~~a~- 79 (200)
|+.|.+|+..-+..+.+.... -.++.|+|++++.+|+| +.|+++|..++ ++--.-.++-
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f----------e~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF----------ELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc----------HhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 345555555544444443332 23678899999999998 99999998765 4444555544
Q ss_pred -HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 80 -WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 80 -~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
|.|||+|+.+. +|.+||.|++|=+.+...
T Consensus 278 cYSLgNtytll~-----------e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 278 CYSLGNTYTLLK-----------EVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHhhhHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 66999999877 999999999997776443
No 198
>PLN03077 Protein ECB2; Provisional
Probab=96.85 E-value=0.014 Score=57.66 Aligned_cols=123 Identities=8% Similarity=0.023 Sum_probs=81.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-------------------------cccccHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-------------------------DSKKIINEAI 62 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-------------------------~~~~~~~eAi 62 (200)
+-|.+.+++|++.++.. +.|...|+.+...|...|+.+.+. ...+++++|.
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 45666666776666553 456666666666666655542210 0114458888
Q ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------
Q 028992 63 SKFEEALVI---DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------ 121 (200)
Q Consensus 63 ~~le~AL~l---dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------ 121 (200)
..|++..+. .|+ ...|.++..+|...| ++++|.+.+++. ...|+-.
T Consensus 610 ~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G-----------~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 610 EYFHSMEEKYSITPN-LKHYACVVDLLGRAG-----------KLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHhCC-----------CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 888777643 333 356778888888877 899999988875 3566654
Q ss_pred --HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 122 --LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 122 --~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
..++.+++.|+.+..|.-|++.+...
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 34567789999999999998877543
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.83 E-value=0.022 Score=52.03 Aligned_cols=100 Identities=18% Similarity=0.056 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE-ALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~-AL~ldP~~~~a~~~LG~a~~ 87 (200)
.|+.-++..+..-.+ -++.+.+....|.||.+.++. |.-++|+..+.. ....++.+++++..+|.+|-
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-------gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-------GDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-------CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344444444443333 455778888999999983221 222999999998 55778889999999999996
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.. |+. ......+.+++|+.+|+++.+.+|+.-
T Consensus 229 D~-~~~-s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 229 DL-FLE-SNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HH-HHH-cCccchHHHHHHHHHHHHHHcCCcccc
Confidence 53 221 122234469999999999999998764
No 200
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.81 E-value=0.0074 Score=58.38 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=71.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-|.+.+++|.+.+++. ...| +..+|..+..++...|++ +.|...+++.++++|++...|..|.++|.
T Consensus 472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~----------~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNL----------ELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCc----------HHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 56777888888877653 2233 456688888888887777 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
..| ++++|.+.+++..+..
T Consensus 540 ~~G-----------~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 540 SSG-----------RQAEAAKVVETLKRKG 558 (697)
T ss_pred hCC-----------CHHHHHHHHHHHHHcC
Confidence 999 9999999999877653
No 201
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.70 E-value=0.0078 Score=40.03 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
+.+|.|+.+++.+| +|++|..+.+++++.+|+|...+
T Consensus 2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHH
Confidence 57899999999999 99999999999999999998544
No 202
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.69 E-value=0.016 Score=42.46 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcC
Q 028992 18 RKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGNAHTSCG 90 (200)
Q Consensus 18 ~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--~~a~~~LG~a~~~~G 90 (200)
+..++++++.||+|.++.+.++.++...|++ ++|++.|-++++.||+. ..+.-.|=.+...+|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~----------e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDY----------EEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 5667889999999999999999999999998 99999999999999886 444444444444444
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.071 Score=46.89 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=76.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
=||-+++-|.+..++....+ +-.+++.|+.+++.+..- ...+++|...|++--+--|..+..+...++|+..
T Consensus 148 lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~g------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATG------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH
Confidence 36667788887777766554 456788899999886543 3346999999999888677788889999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+| +|++|....+.|+..+++++
T Consensus 220 ~~-----------~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 220 LG-----------RYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred hc-----------CHHHHHHHHHHHHhccCCCH
Confidence 88 99999999999999998874
No 204
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.66 E-value=0.0039 Score=56.02 Aligned_cols=69 Identities=20% Similarity=0.109 Sum_probs=59.9
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
+..|-+..|+|.+.++.|++++|+++++++..|...-...+ +-+|-.+|-+||.++|.+.+++.|....
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~----------iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE----------IVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh----------hHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 55677899999999999999999999999999987765433 4899999999999999999998887654
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.56 E-value=0.0023 Score=55.44 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHhc-CcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 59 NEAISKFEEALVI--DPAK----HYTLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 59 ~eAi~~le~AL~l--dP~~----~~a~~~LG~a~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++|+.+|++|+.+ .-++ ..++..+|.+|... | ++++|+++|++|+++
T Consensus 91 ~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-----------d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 91 DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-----------DYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 8999999999987 2222 35778899999887 7 999999999999987
No 206
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.54 E-value=0.029 Score=54.31 Aligned_cols=123 Identities=11% Similarity=-0.038 Sum_probs=65.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-------------------------cccccHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-------------------------DSKKIINEAI 62 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-------------------------~~~~~~~eAi 62 (200)
+-|.+.+++|++.+++..+ .|...|+.+..+|...|+...+. ...+.+++|.
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 3455566666666655432 24455666666666555541100 0012235666
Q ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 028992 63 SKFEEALVIDPAK--HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------- 121 (200)
Q Consensus 63 ~~le~AL~ldP~~--~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------- 121 (200)
..|++..+..+-. ...|.++..+|...| ++++|.+.|++. ...|+..
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G-----------~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREG-----------LLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcC-----------CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 6665555432222 234556666666666 777777777653 2344432
Q ss_pred -HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 122 -LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 122 -~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
.+++.+++.|..+..|.-|.+.+.
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHH
Confidence 344555677777777777776554
No 207
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.50 E-value=0.0051 Score=35.27 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~ 75 (200)
++++++|.++..+|++ ++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence 5789999999999888 99999999999999974
No 208
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.46 E-value=0.03 Score=51.23 Aligned_cols=94 Identities=21% Similarity=0.159 Sum_probs=73.9
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
-+.+++..++|.+..+.+++.+=+.- +..+-..+ ..++. +.=+...|+.++..|+++..+.-||..+
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l-~~~d~----------~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL-RPGDP----------EPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc-CCCCc----------hHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 35778899999999999998765443 33322222 12222 6667778999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
...+ .|.+|..+|+.|+...|+...|.
T Consensus 339 ~k~~-----------~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 339 LKNK-----------LWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHhh-----------HHHHHHHHHHHHHhcCCChhhHH
Confidence 9988 99999999999999999877443
No 209
>PRK10941 hypothetical protein; Provisional
Probab=96.43 E-value=0.02 Score=50.09 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
.++=.++.+.+++ +.|+.+.+..+.++|+++.-+...|.+|..+| .+..|..-++.-|+
T Consensus 185 ~nLK~~~~~~~~~----------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQM----------ELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHH
Confidence 4555566666666 99999999999999999999999999999999 99999999999999
Q ss_pred hCCCCH
Q 028992 116 EEPTNE 121 (200)
Q Consensus 116 l~P~~~ 121 (200)
.-|+++
T Consensus 244 ~~P~dp 249 (269)
T PRK10941 244 QCPEDP 249 (269)
T ss_pred hCCCch
Confidence 999887
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.42 E-value=0.019 Score=53.68 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHT 87 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~~a~~~LG~a~~ 87 (200)
...+.|.+..+......|+.+--+..-|..+...|+. ++|++.|++++..... ++-.+|.+|-++.
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~----------~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL----------EEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH----------HHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999998888 9999999998853333 4567899999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.++ +|++|.++|.+.++.+.-+.
T Consensus 317 ~~~-----------~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 317 FQH-----------DWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred HHc-----------hHHHHHHHHHHHHhccccHH
Confidence 988 99999999999999876654
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.41 E-value=0.0087 Score=55.59 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=70.7
Q ss_pred hchHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC------CHHH
Q 028992 11 LLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA------KHYT 78 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~------~~~a 78 (200)
++.||.|.+.|.++|.+. .-.++..+-+|+.|..+..+ +.||..+++=|.|.-. ...+
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~----------~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV----------QKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 678999999999988643 23566789999999988787 9999999888877443 4468
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.|.||+++..+| .-++|+.+.++.++.
T Consensus 318 cwSLgna~~alg-----------~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 318 CWSLGNAFNALG-----------EHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHhhh-----------hHHHHHHHHHHHHHH
Confidence 899999999999 999999999988765
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.38 E-value=0.033 Score=48.36 Aligned_cols=76 Identities=28% Similarity=0.300 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
-++.|++-|...+.-|++ ++|+..|+......|..+ .+...++-++++-+ ++++|+
T Consensus 33 p~~~LY~~g~~~L~~gn~----------~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-----------~y~~A~ 91 (254)
T COG4105 33 PASELYNEGLTELQKGNY----------EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-----------EYDLAL 91 (254)
T ss_pred CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-----------cHHHHH
Confidence 467899999999998888 999999999999988865 68889999999987 999999
Q ss_pred HHHHHHHHhCCCCH-----HHHHHH
Q 028992 108 ECFQRAVDEEPTNE-----LYQKSL 127 (200)
Q Consensus 108 ~~fqkAl~l~P~~~-----~y~kAl 127 (200)
.+.++=+.+.|+++ .|-+.|
T Consensus 92 ~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 92 AYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHhCCCCCChhHHHHHHHH
Confidence 99999999999997 455555
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.33 E-value=0.023 Score=49.16 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CH---HH
Q 028992 12 LLSEHNRKTAEANYAKDPL--D----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KH---YT 78 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~--d----~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~---~a 78 (200)
+.+++|++.|++|.+..-. . .+++.+.|.++..++++ ++|++.|++.....-+ .. +.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHH
Confidence 6789999999998875321 2 45678899999998888 9999999998875221 22 34
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+...+.+++..| +.-.|...|++....+|...
T Consensus 199 ~l~a~l~~L~~~-----------D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 199 FLKAILCHLAMG-----------DYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTT------------HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCC
Confidence 567788888888 99999999999999999775
No 214
>PLN03077 Protein ECB2; Provisional
Probab=96.27 E-value=0.035 Score=55.01 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=63.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.|.+.+++|.+.+++. ...|+ +.+|..+-.++...++. +.|....+++++++|++...|..|+++|.
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~----------e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV----------ELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 34555566666555542 23333 44444444444443333 78888889999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHH----hCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVD----EEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~----l~P~~~ 121 (200)
..| ++++|.+..+..-+ .+|+..
T Consensus 703 ~~g-----------~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 703 DAG-----------KWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCC-----------ChHHHHHHHHHHHHcCCCCCCCcc
Confidence 988 99999999987754 356543
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.046 Score=52.46 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=76.1
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc-----------------------ccccHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD-----------------------SKKIINEAISKFEE 67 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~-----------------------~~~~~~eAi~~le~ 67 (200)
-..|++|.+.+.+.+...|+|.+++...-++++.+++|+.... ..++.++|+.+++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 3479999999999999999999999999999999888754210 1245677777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
-+|+.+..++-..+.+++.+| +|++|.+.|+..++-+-++
T Consensus 104 --~~~~~~~~ll~L~AQvlYrl~-----------~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 104 --GLDRLDDKLLELRAQVLYRLE-----------RYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred --cccccchHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCch
Confidence 567777778888888888888 9999999999987665444
No 216
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.26 E-value=0.012 Score=35.31 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.++.+||.+|..+| ++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQG-----------RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence 57889999999999 999999999999976
No 217
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.15 E-value=0.073 Score=50.35 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=69.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChH
Q 028992 18 RKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS 97 (200)
Q Consensus 18 ~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~ 97 (200)
...|+++...-+.|...|.++-.-....+.+ .+--..|.++|..+|++++.|..-+.=.+..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~----------~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n------- 153 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTY----------GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN------- 153 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-------
Confidence 4568889999999999999987766554434 88888999999999999999877666555543
Q ss_pred HhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 98 EAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 98 ~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
-+++.|...|.++|+.+|+++
T Consensus 154 ---~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 154 ---LNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred ---cchHHHHHHHHHHhhcCCCCh
Confidence 259999999999999999998
No 218
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.072 Score=46.86 Aligned_cols=92 Identities=22% Similarity=0.133 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
+.+|.-.|+.--.+-|-.+..++..+++.+.++++ ++|.+.+++||.-++++++++.|+-.+-...|
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G--- 255 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAKDPETLANLIVLALHLG--- 255 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC---
Confidence 45666677777777888999999999999999999 99999999999999999999999999888888
Q ss_pred CChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 94 ADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
.+-+--..+..+.....|+++....
T Consensus 256 -------kd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 256 -------KDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred -------CChHHHHHHHHHHHhcCCcchHHHH
Confidence 1333345566677777888775443
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.11 E-value=0.0078 Score=36.22 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
++.++|.++..+|++ ++|+++|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence 478999999999999 99999999966553
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.06 E-value=0.16 Score=44.18 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=79.3
Q ss_pred hchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGN 84 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~~LG~ 84 (200)
-+.+++|.+.+++....+|.+ .++...++-++...+++ ++|+...++=+++.|++++ ++|..|.
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y----------~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY----------DLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 368999999999999999885 46788889999988888 9999999999999999885 5667787
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+++.. .++...-...-.+|+.-|+..|+.-|++.
T Consensus 117 s~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 117 SYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 76442 23333333366789999999999999997
No 221
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.02 E-value=0.015 Score=52.30 Aligned_cols=53 Identities=25% Similarity=0.503 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+.|-..|+.|+.++|++++++..+|....... +.=+|-.||-+|+.++|.|.
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-----------~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHN-----------EIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-----------hhHhhhhhhheeeeeCCCch
Confidence 399999999999999999999999999987766 89999999999999999997
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.01 E-value=0.03 Score=37.21 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG 83 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG 83 (200)
+.++.++.++.+++++ ++|....+.+|+++|++..+.-...
T Consensus 2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 5789999999999999 9999999999999999999765443
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.017 Score=51.85 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=71.4
Q ss_pred hchHHHHHHH-------HHHHHhhCC--CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 11 LLLSEHNRKT-------AEANYAKDP--LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 11 l~~fe~A~~~-------~e~a~~~~P--~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
-...+.|+++ ++-.++.-| ++++..++.|..+++.|++ ++|+.+|+.|++..--++..-|+
T Consensus 114 ~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy----------EaAvqkFqaAlqvsGyqpllAYn 183 (459)
T KOG4340|consen 114 VLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY----------EAAVQKFQAALQVSGYQPLLAYN 183 (459)
T ss_pred HHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH----------HHHHHHHHHHHhhcCCCchhHHH
Confidence 3345555554 233445556 7999999999999998888 99999999999999999999999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH----hCCCC
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD----EEPTN 120 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~----l~P~~ 120 (200)
++.++++.| +++.|+++....++ ..|+.
T Consensus 184 iALaHy~~~-----------qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 184 LALAHYSSR-----------QYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHHhhh-----------hHHHHHHHHHHHHHhhhhcCCcc
Confidence 999999988 99999987766554 45554
No 224
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.043 Score=49.31 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=51.5
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
|-.+|+++++...--.+.+|.+--.+..+|-||....+| .+|-.||++.-.+.|+.....+.-+..+
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f----------~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF----------ALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999998888 7777777777777776554444433333
No 225
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.77 E-value=0.019 Score=53.63 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------HHH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------LYQ 124 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------~y~ 124 (200)
+.|+..|-+||+++|+.+..+-+.+.++...+ +|..|+.-+-+|++++|.+. .|+
T Consensus 21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e-----------~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVE-----------SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHHHHHHHHHHhcCCcceeeechhhhhheeec-----------hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 99999999999999999999999999999988 99999999999999999997 344
Q ss_pred HH-------HHhCCCChHHHHHHH
Q 028992 125 KS-------LEVSTKAPELHMELH 141 (200)
Q Consensus 125 kA-------le~~~k~~e~~~~l~ 141 (200)
+| ..+.|..|.+--.++
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHH
Confidence 44 467899998887777
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.15 Score=49.04 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=59.4
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccc--------c--------HHHHHHH----HHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKK--------I--------INEAISK----FEEAL 69 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~--------~--------~~eAi~~----le~AL 69 (200)
|+...++|++.++ -+++.+...+...|-++.++++|+.+.+... . +..+... ..+.+
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 4555666666665 4677777788888888888888844322110 0 0111111 22233
Q ss_pred HhCCC-CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 70 VIDPA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 70 ~ldP~-~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.+.|. ..+-+||.+.++...| +|.+|++.+++|+++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~g-----------ky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENG-----------KYNQAIELLEKALRI 204 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHH
Confidence 34444 5577889999998888 999999999999553
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.27 Score=43.72 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=79.9
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc---------ccccH---HHHH------------HHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------SKKII---NEAI------------SKF 65 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~---------~~~~~---~eAi------------~~l 65 (200)
....|.+|...+..++..+|++.++...++.+|+..|+.+.... ..+.. ...| ..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34578999999999999999999999999999999998854211 01111 1112 345
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++.+.-||+++++-+.|+..|...| +.++|.+.+-..++.|-+..
T Consensus 226 ~~~~aadPdd~~aa~~lA~~~~~~g-----------~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 226 QRRLAADPDDVEAALALADQLHLVG-----------RNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhccccc
Confidence 6667779999999999999999988 99999999999998876654
No 228
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.65 E-value=0.03 Score=48.44 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+-|.+.|.+||++-|+....|+.+|....+.| +++.|.+.|++.+++||++.
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag-----------~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAG-----------EFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-----------cHHHHHHHHHHHHcCCcccc
Confidence 88899999999999999999999999999988 99999999999999999986
No 229
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.63 E-value=0.22 Score=51.22 Aligned_cols=40 Identities=3% Similarity=-0.126 Sum_probs=21.5
Q ss_pred HHhchHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCC
Q 028992 9 DRLLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~ 48 (200)
-|.+.+++|++.++...+.+ +.+...++.+..+|.+.|++
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 34455555555555555554 33555555555555555554
No 230
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.62 E-value=0.073 Score=52.51 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=67.5
Q ss_pred hchHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDA-----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HYTL 79 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~-----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~a~ 79 (200)
.+.+++|...+++++...|... .++..+|.++...|++ ++|+..+++++.+.... ..++
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~----------~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL----------ARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 4578999999999988655432 3456788888888888 99999999999774432 2355
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.++|.++...| ++++|..+++++++.
T Consensus 535 ~~la~~~~~~G-----------~~~~A~~~~~~al~~ 560 (903)
T PRK04841 535 LQQSEILFAQG-----------FLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence 67899999988 999999999999886
No 231
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.085 Score=48.42 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=87.3
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~-~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
+||=.-..|+.|+...+-....+-..- +.-.++|-|++.+|++ ++|+..|+-+..-+.-+.+.+.+|+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY----------~~Al~~Y~~~~~~~~~~~el~vnLAc 99 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY----------EEALNVYTFLMNKDDAPAELGVNLAC 99 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH----------HHHHHHHHHHhccCCCCcccchhHHH
Confidence 456566689999999888776655433 4556689999999998 99999999999888888899999999
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHhC--CCChHHHHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVS--TKAPELHMELHKHG 144 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----~y~kAle~~--~k~~e~~~~l~~~~ 144 (200)
+++.+| .|.+|...-.+ -|+++ .+.-|..++ .+-..+|.+|+...
T Consensus 100 c~FyLg-----------~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~ 151 (557)
T KOG3785|consen 100 CKFYLG-----------QYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL 151 (557)
T ss_pred HHHHHH-----------HHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH
Confidence 999999 99999776555 47777 455555664 23366777777655
No 232
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.45 E-value=0.13 Score=39.41 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=76.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCccccccccc-HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKI-INEAISKFEEALVIDPAKHYTLWSLG 83 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~-~~eAi~~le~AL~ldP~~~~a~~~LG 83 (200)
+=+-+.+-+|++..+..+..++++. ..+..-|.++..++.--.-++.+-. +.-++++|.++..+.|..+..++.||
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 3455788899999999999999988 5677788888877653222333322 47899999999999999999999999
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.=+-+-- .|++++.-.++++..
T Consensus 86 ~~l~s~~-----------~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 86 SQLGSVK-----------YYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhhhHH-----------HHHHHHHHHHHHhcc
Confidence 8876644 788888888888765
No 233
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.43 E-value=0.27 Score=50.58 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=52.6
Q ss_pred hchHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-PAKHYTLWSLGNA 85 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-P~~~~a~~~LG~a 85 (200)
.+.+++|.+.++..... .| |...+..+-.+|.+.|++ ++|++.|++..+.+ +.+..+|..+..+
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l----------deA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQV----------DRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 34455555555544331 22 233444444455554444 77777777776665 3455666667777
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHh--CCCCHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDE--EPTNELY 123 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l--~P~~~~y 123 (200)
|...| ++++|+..|++..+. .|+...|
T Consensus 624 y~k~G-----------~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 624 CSQKG-----------DWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 77766 777777777777765 5665433
No 234
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.066 Score=46.89 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------CCCCHH----------HHHHHHHHHHhcCccc
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------DPAKHY----------TLWSLGNAHTSCGFLT 93 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------dP~~~~----------a~~~LG~a~~~~G~l~ 93 (200)
..++..-|+-|+.+|+| +||+++|++|+-+ .|..++ .+.|.+.|+...|
T Consensus 178 v~~l~q~GN~lfk~~~y----------kEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~--- 244 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRY----------KEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE--- 244 (329)
T ss_pred hHHHHHhhhhhhhhccH----------HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH---
Confidence 34677889999999988 8888888887644 566555 4568888888877
Q ss_pred CChHHhhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHh--CCCChHHHHHHHHHHH
Q 028992 94 ADLSEAKGDFDKASECFQRAVDEEPTNE--LYQKSLEV--STKAPELHMELHKHGI 145 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~--~y~kAle~--~~k~~e~~~~l~~~~~ 145 (200)
+|-+++++....+..+|+|. .|++|-.- .=+..|+...+.+.+-
T Consensus 245 --------e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 245 --------EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred --------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 99999999999999999997 55544321 2233444444444443
No 235
>PRK10941 hypothetical protein; Provisional
Probab=95.41 E-value=0.085 Score=46.12 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=60.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
+-+...|+.|++..+..+.++|+|+.-+--.|.+|.+++.+ ..|+.-|+.-++.-|+++++-...-.+
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45667899999999999999999999999999999999999 999999999999999999986554433
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.33 E-value=0.054 Score=49.73 Aligned_cols=93 Identities=22% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-----
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDA-----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----- 77 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~-----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~----- 77 (200)
.||+-.|.+++.+....+.+--.++ ..+..+|++.+.++.| +.+++.||.|+++.-++.|
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f----------q~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF----------QKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH----------HHHHHHHHHHHHHhhccCCceeee
Confidence 3555566666655555555443333 5777789999999998 9999999999998665554
Q ss_pred -HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 78 -TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 78 -a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++..||..+..+. ++++|+-+-.+|.++--+..
T Consensus 163 qvcv~Lgslf~~l~-----------D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLK-----------DYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred ehhhhHHHHHHHHH-----------hhhHHhhhhHhHHHHHHhcC
Confidence 4567899998877 99999999999998865443
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.26 E-value=0.16 Score=46.51 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=57.1
Q ss_pred hchHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 11 LLLSEHNRKTAEA-NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 11 l~~fe~A~~~~e~-a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
-+.-++|+..... .....+.+++.+..+|.+|-.+-. ..........+.||..|.++.+++|+... =.|++.++...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~-~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL-ESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-HcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHc
Confidence 6677999999888 667788899999999999987522 11112334479999999999999976433 35666665555
Q ss_pred C
Q 028992 90 G 90 (200)
Q Consensus 90 G 90 (200)
|
T Consensus 273 g 273 (374)
T PF13281_consen 273 G 273 (374)
T ss_pred C
Confidence 5
No 238
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.16 E-value=0.25 Score=42.93 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH--HHHHH-HHHHHHh
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH--YTLWS-LGNAHTS 88 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~--~a~~~-LG~a~~~ 88 (200)
+..+.|++.+|.+++.-|.+.+.|.....-|+.+++. +.|...||+++..-|.+. ..+|. .-.-=..
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 4566699999999999999999999999999988776 999999999998877766 33343 4333455
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
.| +.+...+..+|+.+.-|+........
T Consensus 120 ~G-----------dl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 120 YG-----------DLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HS------------HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred cC-----------CHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 67 99999999999999999976444433
No 239
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.16 E-value=0.03 Score=48.48 Aligned_cols=97 Identities=21% Similarity=0.167 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+..+.|.+.+.+++++-|.+..-|+++|.-....|++ +.|...|++.|++||.++..-- .=+..+|+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~----------daAa~a~~~~L~ldp~D~~gaa---~kLa~lg~ 75 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF----------DAAAAAYEEVLELDPEDHGGAA---LKLAVLGR 75 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH----------HHHHHHHHHHHcCCcccccchh---hhHHhhcC
Confidence 4578899999999999999999999999999999998 9999999999999999986311 11233442
Q ss_pred c-cCChHH---hhcCHHHHHHHHHHHHHhCCCCH
Q 028992 92 L-TADLSE---AKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 92 l-~~~~~~---a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
- +|..+. ...-||.=.+-|+..+-.+=++.
T Consensus 76 ~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~ 109 (287)
T COG4976 76 GETPEKPPSAYVETLFDQYAERFDHILVDKLGYS 109 (287)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1 222221 23346666666666665554443
No 240
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.07 E-value=0.14 Score=43.18 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=68.2
Q ss_pred HHHHhchHHHHHHHHHHHHh----hCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-----
Q 028992 7 DFDRLLLSEHNRKTAEANYA----KDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----- 74 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~----~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----- 74 (200)
||....-+++|++.|.-|+- ....+ +..+.+++-.+..+++- ..-+..+..|...|++|++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 34445567778777776663 22222 44556666666655542 22345579999999999977543
Q ss_pred -CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 75 -KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 75 -~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
....+|.+|..+..+| ++++|+.+|.+.+...-.
T Consensus 163 ~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred hHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCCCC
Confidence 2467889999999999 999999999999976433
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.04 E-value=0.14 Score=48.93 Aligned_cols=105 Identities=14% Similarity=0.022 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
...++..|.+++..-|+....+.+.+.+|.+.+=. +..-.|+.-...|+++||....+|+.|+.++..++
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-------~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~--- 459 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-------GDSYLALRDCHVALRLNPSIQKAHFRLARALNELT--- 459 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-------ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh---
Confidence 34678889999999999999999999999875432 22367888888999999999999999999999999
Q ss_pred CChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHH
Q 028992 94 ADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL 136 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~ 136 (200)
++.+|+.|-..+....|.+..-.-.++..++++..
T Consensus 460 --------r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 460 --------RYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred --------hHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 99999999999999999777666666666666654
No 242
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.02 E-value=0.26 Score=38.69 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHhhCC------------CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992 12 LLSEHNRKTAEANYAKDP------------LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL 79 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P------------~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~ 79 (200)
+.|++|...+.++++..- -|+-++..|+.++..+|+|. ++..-.+.|+..|.+==+++-+....|
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~---e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYD---ECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HH---HHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHHhhccccccccchhH
Confidence 379999999999987541 25668899999999999991 111122334444444445566655443
Q ss_pred ----HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 80 ----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 80 ----~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++.+.++..+| +.++|++.|+++.+.
T Consensus 100 IaaVfsra~Al~~~G-----------r~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLG-----------RKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHH
Confidence 56788888888 999999999998764
No 243
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.92 E-value=0.051 Score=32.41 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+.++.++|.+|..+|++ ++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRY----------EEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHH
Confidence 46789999999999999 9999999999976
No 244
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.71 E-value=0.2 Score=49.40 Aligned_cols=67 Identities=19% Similarity=0.102 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID------PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld------P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
+..+|.++...|++ ++|+..|++++... +....++..+|.+|...| +.++|..
T Consensus 694 ~~~~a~~~~~~g~~----------~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G-----------~~~~A~~ 752 (903)
T PRK04841 694 WRNIARAQILLGQF----------DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG-----------RKSEAQR 752 (903)
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC-----------CHHHHHH
Confidence 45788888888888 99999999999862 223457889999999999 9999999
Q ss_pred HHHHHHHhCCCCHH
Q 028992 109 CFQRAVDEEPTNEL 122 (200)
Q Consensus 109 ~fqkAl~l~P~~~~ 122 (200)
++++|+++......
T Consensus 753 ~L~~Al~la~~~g~ 766 (903)
T PRK04841 753 VLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHhCccch
Confidence 99999999866553
No 245
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.60 E-value=0.17 Score=38.71 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 39 GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 39 G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
+..++..|++ -+|++..+..+...+++.. .+..=|.++..++.-+-+..-..-.+-.|++||.+++.
T Consensus 3 A~~~~~rGnh----------iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 3 AKDYFARGNH----------IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred HHHHHHccCH----------HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 4556777777 9999999999999999884 45556777766654443333333456678888888888
Q ss_pred hCCCCH
Q 028992 116 EEPTNE 121 (200)
Q Consensus 116 l~P~~~ 121 (200)
+.|+.+
T Consensus 73 Lsp~~A 78 (111)
T PF04781_consen 73 LSPDSA 78 (111)
T ss_pred cChhHH
Confidence 888763
No 246
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.57 E-value=0.25 Score=49.48 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=66.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
..|++..++|.+..+.....-++|-..+--+-.+|.++++. ++|+.+|++++.-+|+ -+-++.+=++|.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL----------DEAVHLYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999 9999999999999999 788888888887
Q ss_pred hcC
Q 028992 88 SCG 90 (200)
Q Consensus 88 ~~G 90 (200)
.-+
T Consensus 122 R~~ 124 (932)
T KOG2053|consen 122 REK 124 (932)
T ss_pred HHH
Confidence 755
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.43 Score=42.41 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH--
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC-- 109 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~-- 109 (200)
.+.-..-+..+...+++ .+|...|..++..+|++.++...|+.+|...| +++.|...
T Consensus 134 ~e~~~~~~~~~~~~e~~----------~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g-----------~~e~A~~iL~ 192 (304)
T COG3118 134 EEEALAEAKELIEAEDF----------GEAAPLLKQALQAAPENSEAKLLLAECLLAAG-----------DVEAAQAILA 192 (304)
T ss_pred HHHHHHHhhhhhhccch----------hhHHHHHHHHHHhCcccchHHHHHHHHHHHcC-----------ChHHHHHHHH
Confidence 33444555566666777 99999999999999999999999999999988 44443333
Q ss_pred --------------------HHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 110 --------------------FQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 110 --------------------fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
..+|-. -|+-...+..+..+|+++++.+.++.++...+-
T Consensus 193 ~lP~~~~~~~~~~l~a~i~ll~qaa~-~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 193 ALPLQAQDKAAHGLQAQIELLEQAAA-TPEIQDLQRRLAADPDDVEAALALADQLHLVGR 251 (304)
T ss_pred hCcccchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 333222 345557788888999999999999998875553
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.38 E-value=0.21 Score=38.31 Aligned_cols=51 Identities=20% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL 69 (200)
.+.+.+++|+..+++++..+|.|-.++..+-.+|...|+. .+|+..|++..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~ 123 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYR 123 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHH
Confidence 4567899999999999999999999999999999999998 78887777653
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.32 E-value=0.24 Score=45.61 Aligned_cols=90 Identities=21% Similarity=0.166 Sum_probs=67.6
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC----
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPL----D------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID---- 72 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~----d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld---- 72 (200)
=|-++..+++|+-...+|+++--. | .-+++.++++|..+|+. -+|.++.++|.++.
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L----------gdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL----------GDAMECCEEAMKLALQHG 240 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHhC
Confidence 367788888888888887765422 2 34678899999998888 88999999998873
Q ss_pred --CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 73 --PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 73 --P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
|.....+.++|.+|...| +.|.|..-|+.|...-
T Consensus 241 dra~~arc~~~~aDIyR~~g-----------d~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRG-----------DLERAFRRYEQAMGTM 276 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcc-----------cHhHHHHHHHHHHHHH
Confidence 345566788999999988 7777777777766543
No 250
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.29 E-value=0.88 Score=40.36 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=53.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG 83 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG 83 (200)
-++....|.-+..+++|++.||++...+..+=.+..+.... ++.....++++..+|+++..|...=
T Consensus 41 ~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~----------~~l~~~we~~l~~~~~~~~LW~~yL 106 (321)
T PF08424_consen 41 AERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS----------EKLAKKWEELLFKNPGSPELWREYL 106 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCChHHHHHHH
Confidence 35667788999999999999999998887766666555444 7778899999999999999886543
No 251
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.85 E-value=0.56 Score=49.28 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a 85 (200)
+++-..|.+|.+.++..++.--+...+|..||..|+...+- +.|.+.+++||+.-|+ +.+..--.+..
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~----------~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA----------EAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH----------HHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 34444566677777777776667777888888888776654 5555566666666665 44444444444
Q ss_pred HHhcC
Q 028992 86 HTSCG 90 (200)
Q Consensus 86 ~~~~G 90 (200)
-+++|
T Consensus 1610 EFk~G 1614 (1710)
T KOG1070|consen 1610 EFKYG 1614 (1710)
T ss_pred HhhcC
Confidence 44444
No 252
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.44 Score=45.87 Aligned_cols=88 Identities=20% Similarity=0.099 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHH-HHHHHhCCCCHHHHHHH------HHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKF-EEALVIDPAKHYTLWSL------GNA 85 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~l-e~AL~ldP~~~~a~~~L------G~a 85 (200)
.+..+.-.....+..||+++.+..++|.++...+.. ..++..+ +.++...|++......+ |..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 151 (620)
T COG3914 82 DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ----------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRY 151 (620)
T ss_pred cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHH
Confidence 345666778889999999999999999999886665 5555544 55999999999988777 555
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
...+| +..++....++++++.|.+.
T Consensus 152 ~~~l~-----------~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 152 LKLLG-----------RTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHhc-----------cHHHHHHHHHHHHHhhhhhh
Confidence 55555 99999999999999999987
No 253
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=1.1 Score=43.97 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSL 82 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~L 82 (200)
=|+..|+.+++.|+..+.--|.|-. ..-++..||+.+.|. +.|++.+++|-+.||.++-.-..+
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL----------D~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL----------DNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHhhccccHHHHHHH
Confidence 3667889999999999887777654 457888899998888 999999999999999999877766
Q ss_pred HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992 83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 83 G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
-.+...-| .-++|+.+..+....--+-..=---+....+-|..-.-+..+++
T Consensus 435 ~~~~~~E~-----------~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~ 486 (872)
T KOG4814|consen 435 LQSFLAED-----------KSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLM 486 (872)
T ss_pred HHHHHHhc-----------chHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHH
Confidence 66666655 88999999888765533321111112223455655555665554
No 254
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.28 E-value=0.28 Score=41.33 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 61 Ai~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
|+.+|.+|+.+.|+....|..||.++...| +.=.|+-+|-|++-..--++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~-----------~~l~avy~y~Rsl~~~~Pf~ 50 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG-----------DDLDAVYYYIRSLAVRIPFP 50 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT------------HHHHHHHHHHHHSSSB--H
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcccc-----------chHHHHHHHHHHHhcCCCcH
Confidence 678999999999999999999999999988 99999999999996643334
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.18 E-value=0.91 Score=36.89 Aligned_cols=68 Identities=13% Similarity=-0.007 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
..+++...+...-.+.|+.++..+--|..++..+++ .+|+..|+++..-.|..+.+--.++.|+..+|
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 567788888888899999999999999999999998 99999999999999999998889999998877
No 256
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=0.92 Score=39.53 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc----ccccc------------HHHHHHHHHHHHHhCCCCH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS----DSKKI------------INEAISKFEEALVIDPAKH 76 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~----~~~~~------------~~eAi~~le~AL~ldP~~~ 76 (200)
.||+|.+.+.++-...- =+.+|..-|.++++..+++--. |+-.. -++|+.++++|++|--+-.
T Consensus 29 k~eeAadl~~~Aan~yk-laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYK-LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence 57888888877633221 1345556666666655433211 11122 3556666666665533321
Q ss_pred H------HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 77 Y------TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 77 ~------a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
. -+..+|.+|.+- ..++++|+.+|++|-+.-.+.+
T Consensus 108 rf~~aAk~~~~iaEiyEsd----------l~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESD----------LQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHHhhhhhHHHHHhhh----------HHHHHHHHHHHHHHHHHHcchh
Confidence 1 122344444331 1378899999998887655544
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.93 E-value=1.5 Score=41.83 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------
Q 028992 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------- 121 (200)
Q Consensus 57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------- 121 (200)
.++.....|++-|+-.|.+-.+|...|..-+++| +.|.|-..|.-|+...--+.
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg-----------dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG-----------DTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 3477777888888888888888888888888888 88888888888887653222
Q ss_pred --------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 122 --------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 122 --------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
+|++-|+.++..+ .+..+++--.
T Consensus 521 ~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 521 GEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred chHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 7777777776665 6666665443
No 258
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.47 Score=42.08 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
...++-+.+.+++..++| -+|...|.+.++.||.++.+-.+-+.|+..+| +..+|++-.
T Consensus 251 ~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg-----------~l~DAiK~~ 309 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVANNNKALCLLYLG-----------KLKDALKQL 309 (366)
T ss_pred hHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhhhchHHHHHHHHH-----------HHHHHHHHH
Confidence 344445555555555555 89999999999999999999999999999988 999999999
Q ss_pred HHHHHhCCCCH
Q 028992 111 QRAVDEEPTNE 121 (200)
Q Consensus 111 qkAl~l~P~~~ 121 (200)
+.++...|...
T Consensus 310 e~~~~~~P~~~ 320 (366)
T KOG2796|consen 310 EAMVQQDPRHY 320 (366)
T ss_pred HHHhccCCccc
Confidence 99999999876
No 259
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.79 E-value=0.85 Score=39.44 Aligned_cols=133 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc--ccHHHHHHH----HHHHHHhCCCCH
Q 028992 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK--KIINEAISK----FEEALVIDPAKH 76 (200)
Q Consensus 3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~--~~~~eAi~~----le~AL~ldP~~~ 76 (200)
++.++.+|..+...|++.. +.-...-.|++.|..+|..|.+.+++..+..+. +.-.++... ..-..+-+|...
T Consensus 62 ~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 62 FPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp S-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred CCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 4556677889999999998 322333359999999999999987763321110 111222222 233446789999
Q ss_pred HHHHHHHHH-HHhcCcccCChHHhhcCHHHHHHHHHHHHHh----CCC-----------CH-------------------
Q 028992 77 YTLWSLGNA-HTSCGFLTADLSEAKGDFDKASECFQRAVDE----EPT-----------NE------------------- 121 (200)
Q Consensus 77 ~a~~~LG~a-~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l----~P~-----------~~------------------- 121 (200)
+.+...+.. |...+ +...|...+..-++. +|+ .+
T Consensus 141 dlfi~RaVL~yL~l~-----------n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~ 209 (260)
T PF04190_consen 141 DLFIARAVLQYLCLG-----------NLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPL 209 (260)
T ss_dssp HHHHHHHHHHHHHTT-----------BHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHH
T ss_pred hHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHH
Confidence 999988887 45567 999888877666655 443 12
Q ss_pred ------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 122 ------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 122 ------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.|+..|+.+|...+.-..||..+++.
T Consensus 210 F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 210 FKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence 66666666677777777788887763
No 260
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.57 E-value=0.46 Score=28.92 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH--HHHHHHhCCCC
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC--FQRAVDEEPTN 120 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~--fqkAl~l~P~~ 120 (200)
++.++.+|..+...| ++++|++. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~-----------ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKG-----------KYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHhcccC
Confidence 356788899999988 99999999 55998998875
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.57 E-value=0.46 Score=34.48 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 58 INEAISKFEEALVIDPA----K-----HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~----~-----~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
+.+|++.+.+.+..-.. . ..++.+++.++...| ++++|+..+++||++-..
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHH
Confidence 37887777776655222 2 457788999999988 999999999999987443
No 262
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=1.4 Score=42.50 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHH--HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 17 NRKTAEANYAKDPLDADNLTRW--GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 17 A~~~~e~a~~~~P~d~~~l~~l--G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
++..+..-...+|.+++.+... ...+..++.. ..++-.++.++..||++..++.+||.++...|
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~---- 115 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADS----------TLAFLAKRIPLSVNPENCPAVQNLAAALELDG---- 115 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccc----------hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh----
Confidence 3334444445788888875433 4444444444 78899999999999999999999999987754
Q ss_pred ChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 95 DLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
..+.-+..+-+.|....|+|. ...+++++.|+.++.-..+......|
T Consensus 116 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 116 ------LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred ------hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 256666677777999999886 23344466777766655555554444
Q ss_pred ccc
Q 028992 148 QTL 150 (200)
Q Consensus 148 ~~~ 150 (200)
...
T Consensus 190 cs~ 192 (620)
T COG3914 190 CSW 192 (620)
T ss_pred ccc
Confidence 433
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.17 E-value=1.6 Score=41.51 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=72.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKHYTLWSLGN 84 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-dP~~~~a~~~LG~ 84 (200)
..|++..++|++.++..++.+|. .-.++.++-.+|++++++ .|+...+.+==.+ -|+ .|-+|...
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y----------ad~q~lL~kYdDi~lpk--SAti~YTa 336 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY----------ADVQALLAKYDDISLPK--SATICYTA 336 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH----------HHHHHHHHHhccccCCc--hHHHHHHH
Confidence 35789999999999999998887 455899999999999888 7776666652222 133 34556555
Q ss_pred HHHhcC----cccCChHHhhc---CHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 85 AHTSCG----FLTADLSEAKG---DFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 85 a~~~~G----~l~~~~~~a~~---~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
++.+.. .+.|+.....| ---.|++.+.||++.||..+.|.-
T Consensus 337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 654421 12233222222 123488999999999999997763
No 264
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.56 Score=41.64 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHh
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTS 88 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~ 88 (200)
.|..|...+.+.+..||.++.+-++.+.|++.+|+. .+|+...+.++.++|... ...+||...|..
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 567788888889999999999999999999999998 999999999999999854 466778777644
No 265
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.87 E-value=0.29 Score=44.21 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCcccCChHHhhcCHH
Q 028992 26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFD 104 (200)
Q Consensus 26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~-LG~a~~~~G~l~~~~~~a~~~~d 104 (200)
..-|+|+..|.....-... ++++.+--..|.+++..+|.+.+.|.. -..-+...+ +++
T Consensus 101 nkff~D~k~w~~y~~Y~~k----------~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-----------ni~ 159 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIK----------KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-----------NIE 159 (435)
T ss_pred hcCCCCcHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-----------cHH
Confidence 3448888888776655544 345688889999999999999998753 445567777 999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 028992 105 KASECFQRAVDEEPTNE 121 (200)
Q Consensus 105 ~A~~~fqkAl~l~P~~~ 121 (200)
.+...|+++++.||+++
T Consensus 160 s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 160 SSRAMFLKGLRMNSRSP 176 (435)
T ss_pred HHHHHHHhhhccCCCCc
Confidence 99999999999999998
No 266
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.82 E-value=0.074 Score=48.18 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+++||+.|-.|++++|.....|-..++++..+. ...+|+.-+..|+.++|+.+
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence 399999999999999999999999999999988 99999999999999999997
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.43 E-value=0.79 Score=39.67 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCcccc---cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChH------HhhcCHH
Q 028992 34 NLTRWGEALLELSQFESVS---DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS------EAKGDFD 104 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~---~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~------~a~~~~d 104 (200)
..-..+.+++.+|++.... ......++++..|++|++++|+...+|+.+|..+...-...+... .......
T Consensus 247 ~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (352)
T PF02259_consen 247 SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLE 326 (352)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHH
Confidence 3445566666666652222 123556999999999999999999999999998876432222111 2334556
Q ss_pred HHHHHHHHHHHhCCC
Q 028992 105 KASECFQRAVDEEPT 119 (200)
Q Consensus 105 ~A~~~fqkAl~l~P~ 119 (200)
.|+.+|-+|+...++
T Consensus 327 ~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 327 QAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhhCCC
Confidence 799999999999988
No 268
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.63 Score=42.25 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=60.8
Q ss_pred hhCCC-CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCcccCChHHhh
Q 028992 26 AKDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSLGNAHTSCGFLTADLSEAK 100 (200)
Q Consensus 26 ~~~P~-d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~----a~~~LG~a~~~~G~l~~~~~~a~ 100 (200)
+-.|+ .++++---|+-|+...+| .+|+++|-+.|+-+-.+++ .|.|.+-|...+|
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kry----------k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~---------- 133 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRY----------KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG---------- 133 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhH----------HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH----------
Confidence 33444 456666778888877777 9999999999988555444 4568999999988
Q ss_pred cCHHHHHHHHHHHHHhCCCCH
Q 028992 101 GDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 101 ~~~d~A~~~fqkAl~l~P~~~ 121 (200)
||..|+.-..+|+.++|.+.
T Consensus 134 -NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 134 -NYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred -HHHHHHHHHHHHHhcCcchh
Confidence 99999999999999999997
No 269
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.31 E-value=1.5 Score=44.77 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
|=-.+.|+.|+..|++.-.--|+-. ++.++.|..+++...-+.++ ..+++|+..|++ |.--|.-|--|..-+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP---RDFTQALSEFSY-LHGGVGAPLEYLGKAL 560 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh---HHHHHHHHHHHH-hcCCCCCchHHHhHHH
Confidence 3345679999999999888888754 58899999999876543222 457899999987 5566777777766777
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|..+| +|++=++||.-|++--|+++
T Consensus 561 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 561 VYQRLG-----------EYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHhh-----------hHHHHHHHHHHHHHhcCCCC
Confidence 788877 99999999999999999987
No 270
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.16 E-value=0.34 Score=29.99 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
++++..+|.+-++.++| ++|+.-|+++|+|
T Consensus 1 Adv~~~Lgeisle~e~f----------~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENF----------EQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccH----------HHHHHHHHHHHHH
Confidence 36789999999999999 9999999999987
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=2.6 Score=35.61 Aligned_cols=92 Identities=12% Similarity=0.171 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHT 87 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~~ 87 (200)
.|++|...++.++. +|.|.. +-.|++.+++.++++ ++|+..+...- ++.-.. .--..|.++.
T Consensus 104 ~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k~----------D~AL~~L~t~~--~~~w~~~~~elrGDill 170 (207)
T COG2976 104 NLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKKA----------DAALKTLDTIK--EESWAAIVAELRGDILL 170 (207)
T ss_pred cHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhccc--cccHHHHHHHHhhhHHH
Confidence 45666666665543 233333 447888899888888 78777665421 111111 2235788999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~ 129 (200)
..| +-++|...|++|++.++ ++.-+..++|
T Consensus 171 ~kg-----------~k~~Ar~ay~kAl~~~~-s~~~~~~lqm 200 (207)
T COG2976 171 AKG-----------DKQEARAAYEKALESDA-SPAAREILQM 200 (207)
T ss_pred HcC-----------chHHHHHHHHHHHHccC-ChHHHHHHHh
Confidence 988 99999999999999984 4455555554
No 272
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.09 E-value=1.8 Score=41.31 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=65.6
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
.+.+..||..+++|+..+-.+...|...+.+-....+. .-|...+.+|+.+-|.-...|+..-..--.+|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v----------NhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV----------NHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH----------hHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 34556678888888888877888887777776654443 77777777788777777666666555555566
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
|..-|-+.|++=++..|+-.
T Consensus 156 -----------Ni~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 156 -----------NIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred -----------ccHHHHHHHHHHHcCCCcHH
Confidence 88888888888888888765
No 273
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.03 E-value=0.98 Score=42.96 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSL 82 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~L 82 (200)
.+.+--+.+.+++..+|++++.|..-+.-.++.+.- ++.|...|.++|+.+|+.+..|.+.
T Consensus 120 ~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n---------i~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 120 TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN---------IESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc---------hHHHHHHHHHHhhcCCCChHHHHHH
Confidence 366777889999999999999999988888886551 3899999999999999999988764
No 274
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.86 E-value=0.2 Score=47.56 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHhcCcccCC
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---------IDP---------AKHYTLWSLGNAHTSCGFLTAD 95 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~---------ldP---------~~~~a~~~LG~a~~~~G~l~~~ 95 (200)
.|+|+|.+.+.++.+ .-++-.|.+||+ +.| +.-+++||.|..|...|
T Consensus 285 f~NNlGcIh~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g----- 349 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCY----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG----- 349 (696)
T ss_pred eecCcceEeeehhhH----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----
Confidence 357999999998888 888888899886 122 24578999999999999
Q ss_pred hHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 96 LSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 96 ~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+.-.|.+||++|+..--.|+
T Consensus 350 ------rPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 350 ------RPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ------CcHHHHHHHHHHHHHHhcCc
Confidence 99999999999998765554
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.67 E-value=1.3 Score=41.83 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHhCC
Q 028992 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLEVST 131 (200)
Q Consensus 57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAle~~~ 131 (200)
.+.++.-.-.=..+++| .+.++..+|.++.... +|++|-.|++. +-|++. .-+||+.++.
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-----------~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-----------RYQEAWEYLQK---LPPNERMRDSKVQKALALCQ 540 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-----------hHHHHHHHHHh---CCCchhhHHHHHHHHHHHHH
Confidence 34888888888889999 9999999999999877 99999999987 777665 4457766553
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=1.8 Score=39.75 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHh
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKH---YTLWSLGNAHTS 88 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-dP~~~---~a~~~LG~a~~~ 88 (200)
.+-+|...-++.+...|.|.-++-.--.+++.+|+. ..-...+++.+-- ||+-| .++-.++..+..
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~----------~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ----------IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch----------hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 344555666778888888888777777777777775 4444555666644 66663 233334455566
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.| -|++|.+.-++|+++||.+.
T Consensus 188 ~g-----------~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 188 CG-----------IYDDAEKQADRALQINRFDC 209 (491)
T ss_pred hc-----------cchhHHHHHHhhccCCCcch
Confidence 66 88888888888888888876
No 277
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.53 E-value=3 Score=44.12 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 14 SEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
-++|++...+|++.-|. +.+.....+..-+..|+. +.+...|+..|.-+|+.-|.|.-+-..-..+|
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~- 1648 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG- 1648 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccC-
Confidence 46789999999999998 888888888888888888 99999999999999999999988888888888
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhC--CCCH--HHHHHHHhCC
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEE--PTNE--LYQKSLEVST 131 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~--P~~~--~y~kAle~~~ 131 (200)
+.+.+...|+|++.+. |... .|+|-|++..
T Consensus 1649 ----------~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1649 ----------DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred ----------CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 9999999999999875 4443 7888887753
No 278
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=1.4 Score=38.76 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++.|..+.++.+.++|+++.-+--.|.+|..+| .+.-|++-++..++.-|+.+
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-----------c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-----------CYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-----------CchhhHHHHHHHHHhCCCch
Confidence 399999999999999999999999999999999 99999999999999999886
No 279
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=3.7 Score=38.09 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-Ccccc-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~-~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
.+=+++++.-...+..||+...+|+-.-.++.+.-- .+.-. +-...+++-+...+.+|++||+.-.+|+.+.-++.+.
T Consensus 43 ~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~ 122 (421)
T KOG0529|consen 43 EYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKN 122 (421)
T ss_pred ccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhC
Confidence 344677888888889999999999776666654321 11111 1122467778889999999999999999999998876
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSL 127 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---~y~kAl 127 (200)
+ .-++..=+....++++.||.|- .||+-+
T Consensus 123 p---------~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 123 P---------HSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred C---------CchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 5 2268889999999999999986 566554
No 280
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.92 E-value=0.57 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
++|..||.+-...+ +|++|+.-|++|+++.
T Consensus 2 dv~~~Lgeisle~e-----------~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENE-----------NFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHH
Confidence 57788899888866 9999999999999873
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.91 E-value=5.5 Score=33.90 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
+.|+..+.++.... ++++..++|.+|..- .......++|+..|++|-+... ..+++++| ++...|.-+|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKG------LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcC------CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCch
Confidence 57888888888777 889999999777642 2334556999999999999988 89999999 6666663333
Q ss_pred C----hHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 95 D----LSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 95 ~----~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
. ......+...|..+++++....+...
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 2 11234488889999999888876654
No 282
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.80 E-value=0.44 Score=26.48 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
.++++||.++..+| ++++|...+++
T Consensus 2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQG-----------DPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence 57889999999999 99999988763
No 283
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.79 E-value=1.3 Score=37.35 Aligned_cols=62 Identities=6% Similarity=-0.055 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 17 A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
|++.|..|..+.|.+...++.+|.+....++. -+|+..|-+++-..--.+.+.-||...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999998777 899999999997755568899999988877
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.77 E-value=4.4 Score=32.94 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.++...|...--+.|+.++.-..-|..+...| ++++|+..|+...+..|..+
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-----------~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRG-----------DWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhccCCCCh
Confidence 89999999988999999999999999999988 99999999999888888776
No 285
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=2.3 Score=39.07 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=44.4
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-----YTLWSLGN 84 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-----~a~~~LG~ 84 (200)
-.++|.+|.+.+.+++++||.|.=+.+..+-++.-.+++ +|+.+..++--.. =+.. .-||.-+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----------Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al 255 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH----------KEGKEFMYKTEDD-WRQSWMLASHNYWHTAL 255 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh----------hhHHHHHHhcccc-hhhhhHHHhhhhHHHHH
Confidence 345566666666666666666665555555555555555 5665554443211 1111 12344444
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
.|..-+ +|++|++.|.+-+
T Consensus 256 ~~iE~a-----------eye~aleIyD~ei 274 (491)
T KOG2610|consen 256 FHIEGA-----------EYEKALEIYDREI 274 (491)
T ss_pred hhhccc-----------chhHHHHHHHHHH
Confidence 444444 7777777776655
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.92 E-value=3 Score=39.87 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-------IDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-------ldP~~~~a~~~LG~a~~ 87 (200)
.++.+.++.+ .+-.+.....++|.+++.-+. ......+.|+..|+.|.+ .. ++.+.+.+|.+|.
T Consensus 229 ~~a~~~~~~~--a~~g~~~a~~~~g~~y~~G~~-----g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 229 SEAFKYYREA--AKLGHSEAQYALGICYLAGTY-----GVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYL 299 (552)
T ss_pred hHHHHHHHHH--HhhcchHHHHHHHHHHhhccc-----cccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHh
Confidence 3455555543 345788899999999986322 234456999999998877 33 5668899999997
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
... ..+.. +.+.|+.+|.+|.+....+..|.-+.
T Consensus 300 ~g~-~~~~~-----d~~~A~~~~~~aA~~g~~~a~~~lg~ 333 (552)
T KOG1550|consen 300 QGL-GVEKI-----DYEKALKLYTKAAELGNPDAQYLLGV 333 (552)
T ss_pred cCC-CCccc-----cHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 743 11111 88999999999999988887555444
No 287
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.86 E-value=0.58 Score=42.39 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTR-WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~-lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
-+.+.+.+--..+.+++.++|+|++.|.- -.--+...+++ +-+...|.++|+.||+.|..|+.
T Consensus 118 ~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani----------~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 118 IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI----------ESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH----------HHHHHHHHhhhccCCCCchHHHH
Confidence 34557777788899999999999999976 44456666777 99999999999999999998764
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.68 E-value=6.4 Score=33.95 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=60.9
Q ss_pred HHhchHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---------
Q 028992 9 DRLLLSEHNRKTAEANYAKDP----LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--------- 75 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P----~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--------- 75 (200)
.+-+.|+-|.....++...++ ..+.+.+.-+..+...|+. .+|+..+++.+......
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~----------~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ----------EEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhccccccHHH
Confidence 345567777777777766552 2466666677777777776 89999998888721111
Q ss_pred ------------------HHHHHHHHHHHHhcCcccCCh--HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 76 ------------------HYTLWSLGNAHTSCGFLTADL--SEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 76 ------------------~~a~~~LG~a~~~~G~l~~~~--~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..-.-..+.++...|...... ....+.+++++..|++|+.++|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 111123344444443111000 1123577788888888888877765
No 289
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.67 E-value=2.4 Score=37.22 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=59.3
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
-+....+.|....++.+.++|+|+.-+.-.|.+|..++.+ .-|++-++..++.-|+++.+-.......
T Consensus 192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445788899999999999999999999999999999998 8999999999999999999866544433
No 290
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.53 E-value=5.3 Score=39.38 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=21.7
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~ 48 (200)
|.++-|+..+..|++.+.+---.|++..|.|.-|-+..-|
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF 527 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence 3445555555555555555555555555555555443333
No 291
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.52 E-value=10 Score=32.18 Aligned_cols=92 Identities=15% Similarity=0.029 Sum_probs=65.8
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
...+..+.+.++.+-. -.++...+.+|..+..-.. .....++|+..|+ ...+..++.+.++||..|..-.
T Consensus 54 ~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~g------v~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 54 PPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKG------VSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGR 123 (292)
T ss_pred cccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccC------ccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCC
Confidence 3467777777777655 3445778888888865322 2344688999999 5566788999999999997621
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
. ...+..+|..+|++|.+..-.
T Consensus 124 ------g-v~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 124 ------G-VPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ------C-cccCHHHHHHHHHHHHHcCCh
Confidence 1 233889999999999988443
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.45 E-value=3.3 Score=34.89 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
+++..+.+|.-|.. ..-+.++..|-++|++.+. +++++..|+++|..+| +++.|
T Consensus 140 t~elq~aLAtyY~k-----------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~-----------~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYTK-----------RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK-----------NYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc-----------chhhh
Confidence 55555555555543 2238999999999998655 4899999999999988 99887
Q ss_pred H
Q 028992 107 S 107 (200)
Q Consensus 107 ~ 107 (200)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.08 E-value=1.3 Score=32.02 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=43.2
Q ss_pred HhchHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPL---------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~---------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
|.+.|..|++.+.+.+..-.. ...++.++|.+....|++ ++|+..+++|+++-....|
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLARENGD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHCC
Confidence 566788888777777754322 235667888888888888 9999999999998655444
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.61 E-value=14 Score=33.51 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=62.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-------CCC------------CHH---HH
Q 028992 22 EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------DPA------------KHY---TL 79 (200)
Q Consensus 22 e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------dP~------------~~~---a~ 79 (200)
-..+..+|-+.+.+..++.++..+|++ ..+...++.|+-.|++++.- ++. |-. ++
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~---~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDH---AQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 344688999999999999999998877 23344567777777765532 222 222 34
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC-CH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-NE 121 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~-~~ 121 (200)
+.....+...| -+.-|.++.+-.+.+||. ++
T Consensus 107 ~r~i~~L~~RG-----------~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 107 FRYIQSLGRRG-----------CWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHhcC-----------cHHHHHHHHHHHHhcCCCCCc
Confidence 44555566666 999999999999999999 54
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.61 E-value=3.2 Score=36.64 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq 111 (200)
..+++.+..++...+++ +.+++.+++.+.++|-+-.+|..+=.+|...| +...|+..|+
T Consensus 153 ~~~l~~lae~~~~~~~~----------~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-----------~~~~ai~~y~ 211 (280)
T COG3629 153 IKALTKLAEALIACGRA----------DAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-----------RQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-----------CchHHHHHHH
Confidence 34556666777666666 99999999999999999999999999999988 8888888888
Q ss_pred HHHHh
Q 028992 112 RAVDE 116 (200)
Q Consensus 112 kAl~l 116 (200)
+.-..
T Consensus 212 ~l~~~ 216 (280)
T COG3629 212 QLKKT 216 (280)
T ss_pred HHHHH
Confidence 76653
No 296
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=87.50 E-value=0.24 Score=47.67 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=30.3
Q ss_pred hhhcccccchhhhhhhHHHHHHHHHHHHHHhhcCC
Q 028992 160 QSSKKKSSDLKYDIFGWAILAVGIVAWVGMANSRI 194 (200)
Q Consensus 160 ~~~~~~~~~~~y~~~g~~~l~~~~~~~~~~~~~~~ 194 (200)
..|+||+||=+|-|.|=||-|.+||++||||-.-+
T Consensus 501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~ 535 (576)
T PTZ00441 501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV 535 (576)
T ss_pred ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence 45677889999999999999999999999997433
No 297
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.51 E-value=16 Score=36.14 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
-+++-.-.||++++.-|.+-.+|+..=.+-...-+ ........++.--.||++++..--+-|.+|.+.+..++.+|
T Consensus 41 p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk--~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~-- 116 (835)
T KOG2047|consen 41 PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVK--HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG-- 116 (835)
T ss_pred ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhh--ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 34566778999999999999999876544333222 22233456788888999999988888999999999999999
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
+...--..|.+||.-=|--. .||+-|.++|++.+=|.++-
T Consensus 117 ---------~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L 179 (835)
T KOG2047|consen 117 ---------LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL 179 (835)
T ss_pred ---------hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777777777776554332 67777778777766655543
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.08 E-value=5.4 Score=32.23 Aligned_cols=70 Identities=17% Similarity=0.007 Sum_probs=61.1
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
...++++.......-.+.|+.++..+--|..++..+++ .||+..|++..+-.|..+.+--.++.|+..+|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34566777777777889999999999999999999998 99999999999998898988888888888877
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=11 Score=33.13 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhC
Q 028992 59 NEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS 130 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~ 130 (200)
.|++..|++|..+--.+ ..+-..|+.+-..+. ..+.|+|++.|++++.+=-+...-+.+.++.
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le---------nv~Pd~AlqlYqralavve~~dr~~ma~el~ 153 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALE---------NVKPDDALQLYQRALAVVEEDDRDQMAFELY 153 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 77777777776652111 112223333322211 2368888888888887765555555554443
No 300
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=4.5 Score=35.86 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
..|+...+.++.+||.+-++|.-.-.++..++.. +.+-.+.+.+.++-+|++-.+|-..-.+...+|
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d---------L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~---- 126 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD---------LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG---- 126 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc----
Confidence 4577788888999999999998888888876543 467778888888999999888888777777766
Q ss_pred ChHHhhcCHH-HHHHHHHHHHHhCCCC
Q 028992 95 DLSEAKGDFD-KASECFQRAVDEEPTN 120 (200)
Q Consensus 95 ~~~~a~~~~d-~A~~~fqkAl~l~P~~ 120 (200)
+.. .=+++.++.++.|..|
T Consensus 127 -------d~s~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 127 -------DPSFRELEFTKLMLDDDAKN 146 (318)
T ss_pred -------CcccchHHHHHHHHhccccc
Confidence 433 4455555555554444
No 301
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.82 E-value=2.1 Score=23.56 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEA 41 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~a 41 (200)
.++.+++.+++++...|.+++.|.....-
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 47889999999999999999999877654
No 302
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.93 E-value=0.82 Score=41.62 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
.+++.+-+.++.. ..|+..-..+++.+++...+||-.|.++...- ++++|++..+.|..
T Consensus 279 ~n~~~~~lk~~~~----------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~-----------~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 279 RNLAAVGLKVKGR----------GGARFRTNEALRDERSKTKAHYRRGQAYKLLK-----------NYDEALEDLKKAKQ 337 (372)
T ss_pred cchHHhcccccCC----------CcceeccccccccChhhCcHHHHHHhHHHhhh-----------chhhhHHHHHHhhc
Confidence 4455555555554 67777777888899999999999999999977 99999999999999
Q ss_pred hCCCCHHHHHHHHhCC
Q 028992 116 EEPTNELYQKSLEVST 131 (200)
Q Consensus 116 l~P~~~~y~kAle~~~ 131 (200)
.+|++....++++...
T Consensus 338 ~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 338 KAPNDKAIEEELENVR 353 (372)
T ss_pred cCcchHHHHHHHHHhh
Confidence 9999998888776543
No 303
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.91 E-value=31 Score=32.47 Aligned_cols=104 Identities=20% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc---------------c----------------c
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------------S----------------K 55 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~---------------~----------------~ 55 (200)
+.+|++-.+.|+.+++.++.+-|.-+=++...=..++..|+...... . .
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999876555444444444444422100 0 0
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..-..|...-.+++++.|+...+-..-+.+|+..| +..++-..++.+.+.+|.-.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~-----------~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDG-----------NLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc-----------chhhhhhHHHHHHhcCCChH
Confidence 01245666677889999999998888888999988 99999999999999999766
No 304
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.87 E-value=3.8 Score=39.29 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
..-++++|.|..|+..|+. ..|.+||.+|...--.+|..|.-|+.+..
T Consensus 333 ks~eilYNcG~~~Lh~grP----------l~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRP----------LLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred cchhhHHhhhHHHHhcCCc----------HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3568999999999999999 99999999999999999999999998764
No 305
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.79 E-value=1.3 Score=43.08 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred HHhchHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCCcccccccccHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 028992 9 DRLLLSE-HNRKTAEANYAKDPLDADNLTRWGEALLE-LSQFESVSDSKKIINEAISKFEEALVIDPAKH--YTLWSLGN 84 (200)
Q Consensus 9 ~~l~~fe-~A~~~~e~a~~~~P~d~~~l~~lG~al~~-l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~--~a~~~LG~ 84 (200)
+++++|- .-...+-.+++.+|.+.-.+ +++..|-+ .|+. .+|+.|+..|+-..|.+. -++..||.
T Consensus 189 ~~~~r~~~~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~----------~~A~~Ca~~a~hf~~~h~kdi~lLSlaT 257 (886)
T KOG4507|consen 189 KRLGRSIDDIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEP----------YQAVECAMRALHFSSRHNKDIALLSLAT 257 (886)
T ss_pred hhhhhhHHHHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCCh----------hhhhHHHHHHhhhCCcccccchhhhHHH
Confidence 4555443 34445667777788777555 44455544 3444 888888888887766643 46677888
Q ss_pred HHHhcCccc------------------CCh-----HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 85 AHTSCGFLT------------------ADL-----SEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 85 a~~~~G~l~------------------~~~-----~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++...||+. |+. ..-+++|.....||..|.+.+|...
T Consensus 258 iL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 258 VLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred HHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 888877621 111 1234578888999999999999886
No 306
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.54 E-value=13 Score=33.38 Aligned_cols=47 Identities=21% Similarity=0.132 Sum_probs=42.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
...+-+|+..+|.++..+|.|+.....|-.+|..+| -.+.|...|+.
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG-----------~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG-----------AGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHh
Confidence 345689999999999999999999999999999999 88888888764
No 307
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.37 E-value=19 Score=33.76 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
....+.|...+++.++.-|+..-.++..|.++...| +.++|+++|++|+....
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g-----------~~~~Ai~~~~~a~~~q~ 298 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG-----------NLEEAIESFERAIESQS 298 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc-----------CHHHHHHHHHHhccchh
Confidence 445699999999999999999999999999999988 99999999999995443
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.05 E-value=8.5 Score=36.79 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYA-------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 13 ~fe~A~~~~e~a~~-------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
.++.|+..++.+.+ .. ++.+.+.+|.+|..-.-. +-. ..+.|+..|.+|-+.. ++++.+.||.+
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~----~~~-d~~~A~~~~~~aA~~g--~~~a~~~lg~~ 334 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGV----EKI-DYEKALKLYTKAAELG--NPDAQYLLGVL 334 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCC----ccc-cHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 45666666666654 33 566788899998863322 111 5588999999888874 55677899999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
+..-. ...++..|.++|.+|...-=..+.|+.++
T Consensus 335 ~~~g~--------~~~d~~~A~~yy~~Aa~~G~~~A~~~la~ 368 (552)
T KOG1550|consen 335 YETGT--------KERDYRRAFEYYSLAAKAGHILAIYRLAL 368 (552)
T ss_pred HHcCC--------ccccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 86621 12467888888888887655555444443
No 309
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.46 E-value=8.1 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH---HHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGN---AHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~---a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++|+.+.++||+..++.++-+..||. +|...| .|.+.+++--+=+++
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-----------kyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-----------KYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 99999999999999998886665554 566667 899988887766654
No 310
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.35 E-value=3.9 Score=32.72 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992 15 EHNRKTAEANYA-KDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (200)
Q Consensus 15 e~A~~~~e~a~~-~~P~-d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a 78 (200)
.+.+..++..++ -+|. +-+.++.++..+.+++++ +.++..++..|+.+|++..+
T Consensus 52 ~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY----------~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 52 QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY----------SKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH----------HHHHHHHHHHHhhCCCcHHH
Confidence 345667777775 5555 667899999999999988 99999999999999999986
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.71 E-value=4.6 Score=36.32 Aligned_cols=58 Identities=29% Similarity=0.291 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
.+...+..+++.|.+ .+|++..++++.+||-+...+..|-++|...| +--.|++.|++
T Consensus 281 llgkva~~yle~g~~----------neAi~l~qr~ltldpL~e~~nk~lm~~la~~g-----------D~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKP----------NEAIQLHQRALTLDPLSEQDNKGLMASLATLG-----------DEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCCh----------HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc-----------cchhhhhHHHH
Confidence 445566677777777 99999999999999999999999999999988 55555555554
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.39 E-value=5.3 Score=34.61 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSL 127 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAl 127 (200)
+.+||...++-++-+|.+......|-..|...| ++++|..-++-+-+++|++. +|+..+
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaG-----------dw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-----------DWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-----------hHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 499999999999999999999999999999988 99999999999999999986 666555
No 313
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.71 E-value=5.1 Score=33.72 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=47.4
Q ss_pred hhHHHHhchHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 5 QSDFDRLLLSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 5 ~~~~~~l~~fe~A~~~~e~a~~~~P~------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
.++-.-..++..|++.|+++++.... +..+++.+|....++|++ ++|+..|.+++..
T Consensus 132 ~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~----------~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 132 GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY----------DEAKRWFSRVIGS 194 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHcC
Confidence 34556678999999999999976633 356888999999999999 9999999998865
No 314
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.65 E-value=15 Score=27.73 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=32.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS 46 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~ 46 (200)
|+.....+......+..+..++.++..++.+...+.+..
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 344456888899999999999999999999999998753
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.64 E-value=1.5 Score=24.21 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~ 67 (200)
.+++.+|.++...|++ ++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~----------~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDP----------DEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence 4678999999999998 999988763
No 316
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=80.97 E-value=8.4 Score=37.26 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=59.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhc
Q 028992 22 EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKG 101 (200)
Q Consensus 22 e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~ 101 (200)
++-++.||.|.+.|+.+-.-+.- + -+++..+.||+-+..-|..+.+|...........
T Consensus 10 ~~rie~nP~di~sw~~lire~qt--~---------~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk----------- 67 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT--Q---------PIDKVRETYEQLVNVFPSSPRAWKLYIERELASK----------- 67 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc--C---------CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-----------
Confidence 67789999999999876544322 1 2499999999999999999999987666655544
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 028992 102 DFDKASECFQRAVDEEPT 119 (200)
Q Consensus 102 ~~d~A~~~fqkAl~l~P~ 119 (200)
+|+.-.+.|.|||..-=+
T Consensus 68 dfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 68 DFESVEKLFSRCLVKVLN 85 (656)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999999865433
No 317
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=80.30 E-value=3.7 Score=23.40 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
++.+.||..|.. |. ....+.++|+.+|++|.+..
T Consensus 2 ~a~~~lg~~~~~-G~------g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEY-GL------GVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHc-CC------CCCcCHHHHHHHHHHHHHcc
Confidence 577889998854 31 12458999999999998754
No 318
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.22 E-value=14 Score=29.85 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=50.2
Q ss_pred ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 54 SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 54 ~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
...+.++.++..++.++..| ++.++.+++.++...| +.++|....+++..+-|.+ .|.++.
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G-----------~~~eA~~~~~~~~~lyP~~-~~~~~~ 183 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLG-----------DPEEARQWLARARRLYPAD-EFAAAQ 183 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCcH-HHHHHH
Confidence 34556788888899999999 6788999999999999 9999999999999999933 344433
No 319
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.16 E-value=5.1 Score=21.85 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
.+.|...|++++...|.+++.|.....
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 488999999999999999998877654
No 320
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.06 E-value=24 Score=32.96 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=73.7
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+.++...+++-++..+.++..||.+-.+|+...-+|...... .+..=+..++++|++||.+-.+|-..=-++
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~--------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS--------DWNTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 456666888999999999999999999999999999876543 236778889999999999998886655554
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.... ++ ...-.+=+++-.++|.-|+.|-
T Consensus 156 ~~~~--~~-----~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 156 EQAE--RS-----RNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred HHHh--cc-----cccchhHHHHHHHHHhccchhh
Confidence 3321 00 0023445667777777777765
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.93 E-value=62 Score=31.51 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=77.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc-------------------------ccccccHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV-------------------------SDSKKIINEAIS 63 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~-------------------------~~~~~~~~eAi~ 63 (200)
++++.|+.....+++.+--..+..+.|.+...-+...|...-. -++.+.+.+|..
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKV 387 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHH
Confidence 4566777777777777777777777777777766665443110 123345677777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH---HHHHHHHhCCCCH-------------------
Q 028992 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE---CFQRAVDEEPTNE------------------- 121 (200)
Q Consensus 64 ~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~---~fqkAl~l~P~~~------------------- 121 (200)
.|++...--|+...+-.--.+.....| +++.+.. .+...+.-.-++.
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~-----------~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKG-----------NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhc-----------chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 777777655777766665555555655 5555552 2211111111111
Q ss_pred ------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 122 ------LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 122 ------~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
...++++..|+.-.++.++.+..+.|++
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4445566777777788888777776664
No 322
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.69 E-value=5.7 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHH--HHHHHHhCCCC
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISK--FEEALVIDPAK 75 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~--le~AL~ldP~~ 75 (200)
++.+..+|..+...+++ ++|+.. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence 35678888899888887 999999 55888888865
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.21 E-value=23 Score=28.67 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=52.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC--CCHHHH---
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--AKHYTL--- 79 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP--~~~~a~--- 79 (200)
+.+.+.++.|++.|.++...... -.+.+.++-.+.+..+++ ..+...+++|-.+-- .+.+..
T Consensus 46 ~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 46 YCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHhccchHHHHHHH
Confidence 56777888888888887775433 233445555555555665 556566665554422 222222
Q ss_pred -HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 80 -WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 80 -~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
..-|..+...+ +|.+|...|-.++
T Consensus 116 k~~~gL~~l~~r-----------~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQR-----------DFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhc-----------hHHHHHHHHHccC
Confidence 23455555656 9999999887765
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.88 E-value=14 Score=35.58 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHH--HHHHHHhcC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWS--LGNAHTSCG 90 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~--LG~a~~~~G 90 (200)
-.|-+....++...|.+|+.....+.+..++|.+++........+.++..-..++++--. +.-+.|. +..+-..+|
T Consensus 306 ~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 306 IAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 345555667788899999999999999999999854433222223332222222211000 0011111 111111111
Q ss_pred ---------cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 91 ---------FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 91 ---------~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+.......+.+.||+|..++++.+.++|.-.
T Consensus 386 ~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 386 NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 1224556778899999999999999998754
No 325
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.09 E-value=49 Score=30.68 Aligned_cols=88 Identities=17% Similarity=0.081 Sum_probs=57.9
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-----------------
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID----------------- 72 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld----------------- 72 (200)
|...=++-++.+..++++||..+.++..++.--. .. +-+|...|++||+.-
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa-----~T-------i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEA-----TT-------IVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh-----hh-------HHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 3444556677888999999999998877664321 11 244555555555431
Q ss_pred ------CCCHHHHH--HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 73 ------PAKHYTLW--SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 73 ------P~~~~a~~--~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
..+..+|. .|+.|-.++| +..+|++.|+...+.-|-.
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklG-----------rlrEA~K~~RDL~ke~pl~ 308 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLG-----------RLREAVKIMRDLMKEFPLL 308 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhhhccHH
Confidence 11333333 4677777888 9999999999988888843
No 326
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=77.91 E-value=11 Score=29.76 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHhchHHHHHHHHHHHH-------hhCCCCHHHH----HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 8 FDRLLLSEHNRKTAEANY-------AKDPLDADNL----TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~-------~~~P~d~~~l----~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+-+|+.|++++..+++++ +++.+....| ++.+.++-.+|+. +||+..|+.+-+.
T Consensus 65 ~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM 129 (144)
T PF12968_consen 65 LAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM 129 (144)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence 457889999999888887 5777776666 5778888888888 9999999887643
No 327
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.19 E-value=4.1 Score=27.64 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhC
Q 028992 58 INEAISKFEEALVID 72 (200)
Q Consensus 58 ~~eAi~~le~AL~ld 72 (200)
++.|+....+|++.|
T Consensus 2 ~~~A~~~~~~Av~~D 16 (69)
T PF04212_consen 2 LDKAIELIKKAVEAD 16 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777777776654
No 328
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.29 E-value=8.8 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
...+.....+...+..|++ ..|.+.++.++..||++.++....+.+|..+|
T Consensus 68 GG~d~vl~~A~~~~~~gd~----------~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDY----------QWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5667777778887777777 99999999999999999999999999999887
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.99 E-value=27 Score=28.25 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.++...+...--+-|+.++...+-|.++...| ++++|+..|+...+-.|..+
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-----------~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARG-----------NYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcC-----------CHHHHHHHHHhhhccCCCch
Confidence 88888888888999999999999999999998 99999999999888777654
No 330
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=75.76 E-value=4.5 Score=28.57 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhCCC
Q 028992 58 INEAISKFEEALVIDPA 74 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~ 74 (200)
+.+|++.+.+|++.|-.
T Consensus 3 l~~A~~l~~~Ave~d~~ 19 (75)
T cd02677 3 LEQAAELIRLALEKEEE 19 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788888888776544
No 331
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=75.59 E-value=5.2 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGE 40 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~ 40 (200)
.++.|+..|++.+..+|+ +.+|.+|+.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 478899999999999975 888888874
No 332
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=75.42 E-value=4.5 Score=23.55 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHHHH--HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 76 HYTLWSLG--NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 76 ~~a~~~LG--~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
+++.+.|| .+|.. |. . -...+.++|+.+|++|.+.+
T Consensus 1 a~A~~~lg~~~~~~~-g~--~---g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYN-GK--G---GVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHH-TS--T---SSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhh-cc--C---CccccccchHHHHHHHHHcc
Confidence 56888999 54443 31 0 01226999999999998753
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.12 E-value=13 Score=34.82 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
-+++..|-.||.+.+.+| +++-|.+||+++=+.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g-----------~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQG-----------NIELAEECYQKAKDF 376 (443)
T ss_dssp CSTHHHHHHHHHHHHHTT-----------BHHHHHHHHHHCT-H
T ss_pred cCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhcCc
Confidence 447788889999999988 999999999996544
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.11 E-value=7.3 Score=34.08 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 59 NEAISKFEEALVI---DPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 59 ~eAi~~le~AL~l---dP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
..|=..|.+|-.+ .-+.++ .|..-+++|.+ + +.++|+.|+++|+++-.+-..++.
T Consensus 51 ~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~-----------~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 51 SAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-V-----------DPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-c-----------ChHHHHHHHHHHHHHHHhhhHHHH
Confidence 6666666666544 223333 45556666644 3 899999999999998666554443
No 335
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.99 E-value=27 Score=34.67 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH----HHH
Q 028992 58 INEAISKFEEALVIDPAKHY------TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ----KSL 127 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~------a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~----kAl 127 (200)
|..+++.|+..++--|.+-. ...+|..||..+. +.|+|.++++.|-+.+|.+...+ +++
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~-----------QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE-----------QLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 49999999999988777543 4567888888876 99999999999999999998444 333
Q ss_pred HhCCCChHHHHHHHH
Q 028992 128 EVSTKAPELHMELHK 142 (200)
Q Consensus 128 e~~~k~~e~~~~l~~ 142 (200)
....+.-++..-+..
T Consensus 439 ~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQK 453 (872)
T ss_pred HHhcchHHHHHHHHH
Confidence 444455555544443
No 336
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.34 E-value=20 Score=28.94 Aligned_cols=53 Identities=26% Similarity=0.251 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
.+..++.+++.+...| ++.++.+++.++..+|+. ++|....+++..+-|.+.-
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~----------~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDP----------EEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCcHHH
Confidence 4555667777777788 789999999999999998 9999999999999994433
No 337
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.84 E-value=6.4 Score=36.51 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 37 RWGEALLELSQFESVSDSKKIINEAISKFEEALVID---------PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 37 ~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld---------P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
.+..++.-+|+| ..|+..++- ++++ +-+...+|.+|-+|+-++ +|.+|+
T Consensus 127 gLlRvh~LLGDY----------~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlr-----------RY~DAi 184 (404)
T PF10255_consen 127 GLLRVHCLLGDY----------YQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLR-----------RYADAI 184 (404)
T ss_pred HHHHHHHhccCH----------HHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHH-----------HHHHHH
Confidence 344455667787 777777654 2232 235567899999999988 999999
Q ss_pred HHHHHHHH
Q 028992 108 ECFQRAVD 115 (200)
Q Consensus 108 ~~fqkAl~ 115 (200)
.+|...+-
T Consensus 185 r~f~~iL~ 192 (404)
T PF10255_consen 185 RTFSQILL 192 (404)
T ss_pred HHHHHHHH
Confidence 99998874
No 338
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=72.72 E-value=6.5 Score=36.39 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH-hhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 54 SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE-AKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 54 ~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~-a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
+...+..|+..|++|-. -++|+.|..++-++.++|-|.-.... -..-|.+|.++.++|-.. .+..|+..|+
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a--t~GKy~diLd 401 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA--TNGKYQDILD 401 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT--T----HHHHH
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc--cccchHHHHh
Confidence 34567899999999876 67888999999999998866544333 445688899999988655 4556665554
No 339
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.37 E-value=16 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 028992 59 NEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~ 77 (200)
++||+.|.+++...|+++.
T Consensus 30 ~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhCCChHH
Confidence 3444444444444444433
No 340
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.37 E-value=42 Score=32.32 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC---CCCH---------
Q 028992 57 IINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE---PTNE--------- 121 (200)
Q Consensus 57 ~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~---P~~~--------- 121 (200)
.+..+|.|++..+...|.. +..+..||.+++.. ..|+|-|..+.++|..+. |++.
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~y----------T~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRY----------TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 4689999999999887764 34566788876542 128999999999998764 3331
Q ss_pred -----------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 122 -----------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 122 -----------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
..||++++....|-.|.+|--+++.-.
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 789999999999988888887775433
No 341
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=71.26 E-value=9.3 Score=27.03 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
...|++...+|++.|- .| ...+|...|.+|+++|..++...|+..
T Consensus 3 ~~~a~~l~~~Ave~D~---------------~g----~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 3 ELAAKEVLKRAVELDQ---------------EG----RFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred hHHHHHHHHHHHHHHH---------------hc----cHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 3677777777766543 22 111222245556666666666676543
No 342
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=71.19 E-value=4.6 Score=39.05 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
-.|++.+-.++.+||-.-.+|++++.+|.+++++ .+|+++...+....|.+..
T Consensus 428 ~~AlrDch~Alrln~s~~kah~~la~aL~el~r~----------~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSIQKAHFRLARALNELTRY----------LEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH----------HHhhhhHHHHhhcCchhhh
Confidence 4578888999999999999999999999999998 9999999988888996654
No 343
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=71.15 E-value=8.5 Score=26.52 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhCC
Q 028992 58 INEAISKFEEALVIDP 73 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP 73 (200)
++.|+....+|++.|-
T Consensus 3 ~~~a~~l~~~Av~~D~ 18 (75)
T cd02656 3 LQQAKELIKQAVKEDE 18 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777777755543
No 344
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.74 E-value=9.6 Score=27.05 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhC
Q 028992 59 NEAISKFEEALVID 72 (200)
Q Consensus 59 ~eAi~~le~AL~ld 72 (200)
..|++...+|++.|
T Consensus 4 ~~Ai~~a~~Ave~D 17 (76)
T cd02681 4 RDAVQFARLAVQRD 17 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777765
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=69.73 E-value=30 Score=35.52 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---------------------IDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~---------------------ldP~~~~a~~~LG~a~~ 87 (200)
-.|+..|-.||.-+-..|.. +-|+..|+.|-. ....+--|-|.||.-|.
T Consensus 909 ~~d~~L~~WWgqYlES~Gem----------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEM----------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred ccchHHHHHHHHHHhcccch----------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 34556666777665555554 777777665532 23445567788888888
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
..| ++-+|+.+|.||-..
T Consensus 979 n~g-----------~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 979 NDG-----------DVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhH-----------HHHHHHHHHHHHHHH
Confidence 888 999999998886443
No 346
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.41 E-value=16 Score=32.17 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq 111 (200)
+..+.+-++++....+| +.|..+|++|.+---++. .+|.-+.+|.+.+.|..+ ...+.++..+|+
T Consensus 31 as~yekAAvafRnAk~f----------eKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake----~~klsEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKF----------EKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKE----LSKLSEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccH----------HHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH----HHHhHHHHHHHH
Confidence 34555666677776777 888889999886655553 334444444333322111 116677777777
Q ss_pred HHHHh
Q 028992 112 RAVDE 116 (200)
Q Consensus 112 kAl~l 116 (200)
||..+
T Consensus 96 KAs~l 100 (308)
T KOG1585|consen 96 KASEL 100 (308)
T ss_pred HHHHH
Confidence 77665
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.10 E-value=20 Score=22.68 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA 126 (200)
++|+.+|...| +++.|.+..+..+. +++.+.-.+|
T Consensus 3 LdLA~ayie~G-----------d~e~Ar~lL~evl~-~~~~~q~~eA 37 (44)
T TIGR03504 3 LDLARAYIEMG-----------DLEGARELLEEVIE-EGDEAQRQEA 37 (44)
T ss_pred hHHHHHHHHcC-----------ChHHHHHHHHHHHH-cCCHHHHHHH
Confidence 67899999999 99999999999994 5555443333
No 348
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.10 E-value=78 Score=27.19 Aligned_cols=92 Identities=18% Similarity=0.102 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHhhC-CCCHHH-------HHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHh----CC---CC
Q 028992 12 LLSEHNRKTAEANYAKD-PLDADN-------LTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVI----DP---AK 75 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~-P~d~~~-------l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~l----dP---~~ 75 (200)
+.++-|.-.+.++-... ..+++. +++.|..++..+ ++ ++|+..+++|+++ .+ ..
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~----------~~a~~wL~~a~~~l~~~~~~~~~~ 76 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKY----------EEAVKWLQRAYDILEKPGKMDKLS 76 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHHHHhhhhccccC
Confidence 45555555555554433 334443 455555555555 55 9999999999888 22 22
Q ss_pred -------HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 76 -------HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 76 -------~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..++..|+++|...+ ..+.+++|....+.+-..-|+..
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~--------~~~~~~ka~~~l~~l~~e~~~~~ 121 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWD--------TYESVEKALNALRLLESEYGNKP 121 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHHHHhCCCCc
Confidence 235567888887755 12356677777777777777744
No 349
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.06 E-value=30 Score=29.67 Aligned_cols=102 Identities=9% Similarity=-0.083 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHH------------HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNL------------TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL 79 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l------------~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~ 79 (200)
+.|+.|++.++.+++.+-.-|+.+ ..|+..-...|+. .+ .-+...+..+..-.. -|+...+-
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~---~e--~~~~~~~~~l~~~~d-mpd~vrAK 170 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGES---VE--PYFLRVFLDLTTEWD-MPDEVRAK 170 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCC---CC--hHHHHHHHHHHhcCC-CChHHHHH
Confidence 578999999999999885555443 3444444444431 00 001111111111011 24444444
Q ss_pred H--HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 80 W--SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 80 ~--~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
| .+|.++..-.--.| ....++...|+.++++|+++||+-.
T Consensus 171 l~K~~G~~llr~~~g~~--~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEP--IGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHhhcccCCC--ccCcccHHHHHHHHHHHHHhCCCCC
Confidence 4 35555532000001 1112378899999999999999865
No 350
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=65.47 E-value=38 Score=32.15 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
+-+.+..||+++++. +-|+.+-.+.+-+||....-|..-+.+...+. +|.+|...+--|
T Consensus 230 Ietklv~CYL~~rkp----------dlALnh~hrsI~lnP~~frnHLrqAavfR~Le-----------Ry~eAarSamia 288 (569)
T PF15015_consen 230 IETKLVTCYLRMRKP----------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLE-----------RYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHhhhhcCCC----------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 447899999999998 99999999999999999999988888888766 777777765555
Q ss_pred H
Q 028992 114 V 114 (200)
Q Consensus 114 l 114 (200)
.
T Consensus 289 ~ 289 (569)
T PF15015_consen 289 D 289 (569)
T ss_pred H
Confidence 4
No 351
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.41 E-value=14 Score=25.46 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
+++|+....+|++.|- .| ...+|...|.+|++.|.+++...|+
T Consensus 5 ~~~A~~li~~Av~~d~---------------~g----~~~eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 5 LSKAKELISKALKADE---------------AG----DYEEALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHH---------------cC----CHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4677777777766554 33 2222333455555666666666654
No 352
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.25 E-value=15 Score=26.04 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHh
Q 028992 102 DFDKASECFQRAVDE 116 (200)
Q Consensus 102 ~~d~A~~~fqkAl~l 116 (200)
+|++|+.+|..||+.
T Consensus 21 ny~eA~~lY~~ale~ 35 (75)
T cd02680 21 NAEEAIELYTEAVEL 35 (75)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777777777777765
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.00 E-value=55 Score=31.51 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHhchHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhcCCccccc--ccccHHHHHHHHHHHHHh---CCC--
Q 028992 9 DRLLLSEHNRKTAEANY---AKDPLDA----DNLTRWGEALLELSQFESVSD--SKKIINEAISKFEEALVI---DPA-- 74 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~---~~~P~d~----~~l~~lG~al~~l~~~~~~~~--~~~~~~eAi~~le~AL~l---dP~-- 74 (200)
.-.++++++++..++.. ...|..+ .....|-..+...-.+..+-. ..+.+..|...++++... .|.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 398 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKL 398 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccch
Confidence 56678999999999888 2222221 111222211111111100000 112226666666655544 333
Q ss_pred ----CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH--------HHHHhCCCCH
Q 028992 75 ----KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ--------RAVDEEPTNE 121 (200)
Q Consensus 75 ----~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq--------kAl~l~P~~~ 121 (200)
.+..++..|..+...| +.+.|..+|+ .+...++.++
T Consensus 399 ~~~~~~~~~yL~gl~~q~~g-----------~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 399 YESLYPLLHYLLGLYYQSTG-----------DLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred hhhhhHHHHHHHHHHHHHcC-----------CHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 4778888998888877 9999999998 6666667666
No 354
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.86 E-value=19 Score=30.67 Aligned_cols=69 Identities=28% Similarity=0.323 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHH-hcCcccCChHHhhcCHHHHH
Q 028992 37 RWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTL---WSLGNAHT-SCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 37 ~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~---~~LG~a~~-~~G~l~~~~~~a~~~~d~A~ 107 (200)
..|..+..+..+..+.+.....+.|...|++|+. +.|.+|--+ .|.+.-|+ ..| +.++|+
T Consensus 121 mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~-----------~~~~A~ 189 (236)
T PF00244_consen 121 MKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILN-----------DPEKAI 189 (236)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS------------HHHHH
T ss_pred HhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcC-----------ChHHHH
Confidence 4677777788877666666677899999998886 477777533 34444433 355 999999
Q ss_pred HHHHHHHHh
Q 028992 108 ECFQRAVDE 116 (200)
Q Consensus 108 ~~fqkAl~l 116 (200)
+.-++|++.
T Consensus 190 ~ia~~afd~ 198 (236)
T PF00244_consen 190 EIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887754
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.59 E-value=12 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ 70 (200)
.+.++.+|+++|+. +.|.+.+++.+.
T Consensus 2 kLdLA~ayie~Gd~----------e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDL----------EGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence 35789999999999 999999999995
No 356
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=63.32 E-value=10 Score=35.22 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc--ccccccHHHHHHHHHHHHHh
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV--SDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~--~~~~~~~~eAi~~le~AL~l 71 (200)
..+..|++++++|-. -++|+.|.+++.+++.+|+.... .+..+.|.+|..++.+|=..
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 467788888888755 77899999999999999985433 23556789999999888654
No 357
>PF12854 PPR_1: PPR repeat
Probab=61.29 E-value=21 Score=20.77 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
.-.|..|=..|.+.| ++++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G-----------~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAG-----------RVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCC-----------CHHHHHHHHHh
Confidence 456777888999988 99999999976
No 358
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=60.59 E-value=66 Score=27.37 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.|++|.+.+.....-| ..+..-+.+|.-++. |.- -+......|++.++.|-. -+.+++-.++|.++..-.
T Consensus 50 nF~~A~kv~K~nCden-~y~kSCyKyG~y~~~-GKg----G~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~-- 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLA-GKG----GDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGE-- 119 (248)
T ss_pred HHHHHHHHHHhccccc-CCcHHHHHhhhhhhc-ccC----CCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCc--
Confidence 4555555544443332 356777788775543 321 234556899999987654 678888888888876521
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCHHH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNELY 123 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y 123 (200)
-..++.=+.++|..|+.||.+++-....+
T Consensus 120 --~~r~~dpd~~Ka~~y~traCdl~~~~aCf 148 (248)
T KOG4014|consen 120 --KDRKADPDSEKAERYMTRACDLEDGEACF 148 (248)
T ss_pred --CCccCCCCcHHHHHHHHHhccCCCchHHH
Confidence 11223336889999999999998776633
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=60.51 E-value=36 Score=30.06 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=46.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+...+.|+.+.+..++.+..+|-|-.+|..+=.+|...|+. ..||..|++.-+.
T Consensus 163 ~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y~~l~~~ 216 (280)
T COG3629 163 LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAYRQLKKT 216 (280)
T ss_pred HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999998887 8888888876654
No 360
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.04 E-value=27 Score=34.40 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=52.3
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
+.--|...|-+.+...++|+++.++ ++-.+-++ +.+|+. +.|.... .+-++..=|-.||.+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D-~d~rFela---l~lgrl----------~iA~~la-----~e~~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD-PDQRFELA---LKLGRL----------DIAFDLA-----VEANSEVKWRQLGDA 675 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC-hhhhhhhh---hhcCcH----------HHHHHHH-----HhhcchHHHHHHHHH
Confidence 3344555555566666666666554 33333333 333444 5555533 234566677789999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
-++.| ++..|.+||++|-++.
T Consensus 676 al~~~-----------~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 676 ALSAG-----------ELPLASECFLRARDLG 696 (794)
T ss_pred Hhhcc-----------cchhHHHHHHhhcchh
Confidence 99988 9999999999987764
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.66 E-value=44 Score=24.13 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHH---HHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGE---ALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~---al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
.-++|+...+++++..++.++-+..+|. ++.+.|++ ..++.=|+..++-|-+++
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gky------r~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKY------REMLAFALQQLEIAEELE 77 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcc
Confidence 3467888999999999998887777765 67777887 445555666666665553
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.12 E-value=28 Score=31.61 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=32.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 67 ~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
..|..+|-+.+++..++.++..+| |...|.+-.+.|+-+|++++
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~g----d~~~A~~lleRALf~~e~~~ 74 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQG----DHAQANDLLERALFAFERAF 74 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999 55555555555555555554
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=57.25 E-value=1.3e+02 Score=25.90 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHhh----C---CCCHH-------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992 13 LSEHNRKTAEANYAK----D---PLDAD-------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~----~---P~d~~-------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a 78 (200)
.|+.|....+++++. . ...++ ++..++.+++..+.+ ...++|+..++.+-.--|+++..
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHH
Confidence 678888888888876 2 22222 455566666655443 23466777788887888998888
Q ss_pred HHH
Q 028992 79 LWS 81 (200)
Q Consensus 79 ~~~ 81 (200)
++.
T Consensus 124 ~~L 126 (278)
T PF08631_consen 124 FLL 126 (278)
T ss_pred HHH
Confidence 743
No 364
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=57.12 E-value=39 Score=29.19 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
-..|..+..+..+..+.+.+...+.|...|++|+++ .|.+|--+ .|.+..|+. ..++.++|.
T Consensus 122 KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yE----------I~~~~~~A~ 191 (244)
T smart00101 122 KMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYE----------ILNSPDRAC 191 (244)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH----------HcCCHHHHH
Confidence 356777777777777776667789999999999864 57777532 233333332 233888888
Q ss_pred HHHHHHHHh
Q 028992 108 ECFQRAVDE 116 (200)
Q Consensus 108 ~~fqkAl~l 116 (200)
..-++|++.
T Consensus 192 ~lAk~afd~ 200 (244)
T smart00101 192 NLAKQAFDE 200 (244)
T ss_pred HHHHHHHHH
Confidence 777776654
No 365
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.87 E-value=34 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhC
Q 028992 58 INEAISKFEEALVID 72 (200)
Q Consensus 58 ~~eAi~~le~AL~ld 72 (200)
++.|+..+.+|++.|
T Consensus 3 ~~~A~~l~~~Av~~D 17 (75)
T cd02678 3 LQKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777775543
No 366
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=56.53 E-value=1.1e+02 Score=24.81 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=53.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG 83 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~---~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG 83 (200)
++..++.-++.++ .|-.+.+ .+..+|.-+.+.|+. ++|+.+|.++..---... +.+.++-
T Consensus 15 ~~~~Le~elk~~~----~n~~kesir~~~~~l~~~~~~~Gd~----------~~A~k~y~~~~~~~~~~~~~id~~l~~i 80 (177)
T PF10602_consen 15 ELEKLEAELKDAK----SNLGKESIRMALEDLADHYCKIGDL----------EEALKAYSRARDYCTSPGHKIDMCLNVI 80 (177)
T ss_pred HHHHHHHHHHHHH----hccchHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 3334444444433 3455544 556999999999988 999999999877543322 3444455
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.+....| ++.....+..+|-..
T Consensus 81 rv~i~~~-----------d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 81 RVAIFFG-----------DWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHhC-----------CHHHHHHHHHHHHHH
Confidence 5555666 788877777777654
No 367
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=56.48 E-value=50 Score=34.02 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 56 KIINEAISKFEEA----------LVIDPA----------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 56 ~~~~eAi~~le~A----------L~ldP~----------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
+.++.|++.||++ |.-+|. ++..|-..|.-+.+.| +.|.|+.+|..|-+
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G-----------emdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG-----------EMDAALSFYSSAKD 940 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc-----------chHHHHHHHHHhhh
Confidence 3468888888864 444554 3344445788888888 89999988888754
Q ss_pred h
Q 028992 116 E 116 (200)
Q Consensus 116 l 116 (200)
.
T Consensus 941 ~ 941 (1416)
T KOG3617|consen 941 Y 941 (1416)
T ss_pred h
Confidence 3
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.38 E-value=98 Score=29.82 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHH-hcCCcccccccccHHHHHHHHHHHHHhC--CCCHHH----HHH
Q 028992 13 LSEHNRKTAEANYAKDPL----DADNLTRWGEALLE-LSQFESVSDSKKIINEAISKFEEALVID--PAKHYT----LWS 81 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~----d~~~l~~lG~al~~-l~~~~~~~~~~~~~~eAi~~le~AL~ld--P~~~~a----~~~ 81 (200)
....|++.++..++..+- ++.++.++|.+|++ ..++ ++|...+++++.+. ++-.+. .+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~----------~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l 105 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENL----------DLAETYLEKAILLCERHRLTDLKFRCQFL 105 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 345677777777742222 56688899999985 4445 99999999998887 444333 345
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
+..+|...+ ...|....+++|+.-
T Consensus 106 l~~i~~~~~------------~~~a~~~l~~~I~~~ 129 (608)
T PF10345_consen 106 LARIYFKTN------------PKAALKNLDKAIEDS 129 (608)
T ss_pred HHHHHHhcC------------HHHHHHHHHHHHHHH
Confidence 666666654 222555555555443
No 369
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=56.34 E-value=1.9 Score=29.42 Aligned_cols=17 Identities=47% Similarity=1.185 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028992 171 YDIFGWAILAVGIVAWV 187 (200)
Q Consensus 171 y~~~g~~~l~~~~~~~~ 187 (200)
++.-||-..++|+|.||
T Consensus 33 feakgwqtyavglvtwv 49 (70)
T PF10953_consen 33 FEAKGWQTYAVGLVTWV 49 (70)
T ss_pred ecccCceeeeehhHHHH
Confidence 56779999999999996
No 370
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.22 E-value=34 Score=29.80 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=53.7
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
+.=+-....+++..++..++.+|.|+....-+=..|+-.|++ +.|...++-+-+++|+...
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw----------~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW----------EKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH----------HHHHHHHHHHhhcCcccch
Confidence 333445789999999999999999999999999999998888 9999999999999999754
No 371
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=55.71 E-value=42 Score=24.45 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=13.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 65 FEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 65 le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+-....-+.+++.+..|+.+|..
T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~y~~ 90 (118)
T PF07739_consen 67 MELINQFTGGDPELLRGLAQMYVE 90 (118)
T ss_dssp HHHHHHSS---HHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHc
Confidence 333334556677888888888855
No 372
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.62 E-value=13 Score=26.70 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHHHHhCCC
Q 028992 101 GDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 101 ~~~d~A~~~fqkAl~l~P~ 119 (200)
+.|++|..+..+||..|-.
T Consensus 3 ~~~~~A~~~I~kaL~~dE~ 21 (79)
T cd02679 3 GYYKQAFEEISKALRADEW 21 (79)
T ss_pred hHHHHHHHHHHHHhhhhhc
Confidence 3677777777777766544
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=55.47 E-value=23 Score=25.12 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhC
Q 028992 59 NEAISKFEEALVID 72 (200)
Q Consensus 59 ~eAi~~le~AL~ld 72 (200)
+.|.....+|++.|
T Consensus 4 ~~A~~~a~~AVe~D 17 (75)
T cd02682 4 EMARKYAINAVKAE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666677776665
No 374
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.49 E-value=76 Score=30.95 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=49.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.|....+.++...+.-+.-....+-.+...+..+-..++. +.|-++|++.+..+|+ ++++..+.-++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNET----------ERAYALYETLIAQNND--EARYEYARRLYN 86 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhh----------HhHHHHHHHHHHhCCc--chHHHHHHHHHh
Confidence 3444555665555555544445555566666666666666 9999999999999999 667777888888
Q ss_pred cC
Q 028992 89 CG 90 (200)
Q Consensus 89 ~G 90 (200)
.|
T Consensus 87 ~~ 88 (578)
T PRK15490 87 TG 88 (578)
T ss_pred hh
Confidence 77
No 375
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.28 E-value=73 Score=25.69 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=29.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 65 FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 65 le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+....+-+-.+|+.+..+|++|...| +..+|.+..++|.+.
T Consensus 109 ~~~l~kn~~~~p~~L~kia~Ay~klg-----------~~r~~~ell~~ACek 149 (161)
T PF09205_consen 109 YNELKKNEEINPEFLVKIANAYKKLG-----------NTREANELLKEACEK 149 (161)
T ss_dssp HHHH-----S-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHT
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHh
Confidence 34444456678999999999999999 999999999998764
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=54.20 E-value=69 Score=29.98 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=47.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
...++++.|-++|.+-+..|++ +-|..+|+++ ++.+ .|...|...| +-++=
T Consensus 342 ~~~~~~~~W~~Lg~~AL~~g~~----------~lAe~c~~k~-----~d~~---~L~lLy~~~g-----------~~~~L 392 (443)
T PF04053_consen 342 KELDDPEKWKQLGDEALRQGNI----------ELAEECYQKA-----KDFS---GLLLLYSSTG-----------DREKL 392 (443)
T ss_dssp CCCSTHHHHHHHHHHHHHTTBH----------HHHHHHHHHC-----T-HH---HHHHHHHHCT------------HHHH
T ss_pred HhcCcHHHHHHHHHHHHHcCCH----------HHHHHHHHhh-----cCcc---ccHHHHHHhC-----------CHHHH
Confidence 3456899999999999999998 9999999885 2333 3445577777 66555
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 028992 107 SECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~~y~kAl 127 (200)
.+.-+.|....-.|..+.-++
T Consensus 393 ~kl~~~a~~~~~~n~af~~~~ 413 (443)
T PF04053_consen 393 SKLAKIAEERGDINIAFQAAL 413 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHH
Confidence 555555555554444444444
No 377
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=53.36 E-value=25 Score=18.82 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
|..+=++|...| ++++|.+.|++-.+.
T Consensus 3 y~~li~~~~~~~-----------~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMG-----------QFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccc-----------hHHHHHHHHHHHhHC
Confidence 455667788888 999999999987653
No 378
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=52.48 E-value=17 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP 73 (200)
+++.++++-+|..... ...+.++|..|++.++-+|
T Consensus 1 ~qt~FnyAw~Lv~S~~-------~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSNN-------REDQQEGIALLEELYRDEP 35 (35)
T ss_dssp -HHHHHHHHHHHHSSS-------HHHHHHHHHHHHHHCCCS-
T ss_pred CcchhHHHHHHhcCCC-------HHHHHHHHHHHHHHHhccC
Confidence 3567888888887544 3445899999999887665
No 379
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=52.17 E-value=15 Score=23.67 Aligned_cols=13 Identities=38% Similarity=1.224 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHh
Q 028992 178 ILAVGIVAWVGMA 190 (200)
Q Consensus 178 ~l~~~~~~~~~~~ 190 (200)
+...||.+|+||.
T Consensus 12 vIil~If~~iGl~ 24 (49)
T PF11044_consen 12 VIILGIFAWIGLS 24 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3456899999985
No 380
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.17 E-value=52 Score=30.18 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=72.7
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP---AKHYTLWSLG 83 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP---~~~~a~~~LG 83 (200)
.-+++..++++++.+++-+ -.-.-.+++.+.+.-|++.|+- +.|++.+.+..+-.- .+-|+.+++
T Consensus 80 neeki~eld~~iedaeenl-GE~ev~ea~~~kaeYycqigDk----------ena~~~~~~t~~ktvs~g~kiDVvf~~- 147 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENL-GESEVREAMLRKAEYYCQIGDK----------ENALEALRKTYEKTVSLGHKIDVVFYK- 147 (393)
T ss_pred hHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHhhcccchhhHHHH-
Confidence 3467778888888877641 1223467889999999998887 777776665554322 223444332
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHhCCCChHHHHH
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------~y~kAle~~~k~~e~~~~ 139 (200)
..+|++--|..-..+..++|...+++--+-+-.|- .|.-++.-..++..++..
T Consensus 148 ---iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 148 ---IRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLD 206 (393)
T ss_pred ---HHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23455555666667778888888877666665554 455555544444444443
No 381
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.02 E-value=35 Score=24.40 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhCC
Q 028992 58 INEAISKFEEALVIDP 73 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP 73 (200)
++.|.++.++||+.|-
T Consensus 5 ~~~A~~~I~kaL~~dE 20 (79)
T cd02679 5 YKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3777777777777753
No 382
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.25 E-value=43 Score=18.82 Aligned_cols=28 Identities=14% Similarity=-0.048 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 61 AISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 61 Ai~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.++...+++..||++..+|..+--++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4566789999999999999876555543
No 383
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.12 E-value=1.2e+02 Score=32.15 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
-+.+++|..+|.+.+..+.. .+||+.|-+ -++|..|...-.+-...| .||+=+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v----------~dAieSyik-----adDps~y~eVi~~a~~~~-----------~~edLv~ 1154 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLV----------KDAIESYIK-----ADDPSNYLEVIDVASRTG-----------KYEDLVK 1154 (1666)
T ss_pred hCChHHHHHHHHHHHhcCch----------HHHHHHHHh-----cCCcHHHHHHHHHHHhcC-----------cHHHHHH
Confidence 46789999999999986665 999999866 477788888777777877 9999999
Q ss_pred HHHHHHHh
Q 028992 109 CFQRAVDE 116 (200)
Q Consensus 109 ~fqkAl~l 116 (200)
|++.|=..
T Consensus 1155 yL~MaRkk 1162 (1666)
T KOG0985|consen 1155 YLLMARKK 1162 (1666)
T ss_pred HHHHHHHh
Confidence 99887654
No 384
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=51.05 E-value=1.7e+02 Score=27.67 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc-------------------ccHHHHHHHHH---HHHHh
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK-------------------KIINEAISKFE---EALVI 71 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~-------------------~~~~eAi~~le---~AL~l 71 (200)
-..|+..+..+.++.|+..-.-..-+.+|++.++.+.+..-. ..-+-++.-++ +...+
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 457888999999999999988888889999887764332100 00122333333 33345
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
.|++.+....+..+-+.-| +|-.|-.--+.+.++.|....|--
T Consensus 325 k~nnaes~~~va~aAlda~-----------e~~~ARa~Aeaa~r~~pres~~lL 367 (531)
T COG3898 325 KPNNAESSLAVAEAALDAG-----------EFSAARAKAEAAAREAPRESAYLL 367 (531)
T ss_pred CccchHHHHHHHHHHHhcc-----------chHHHHHHHHHHhhhCchhhHHHH
Confidence 6667777666666666666 777777777777777777665543
No 385
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.97 E-value=39 Score=18.24 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
|..+=.+|...| ++++|.+.|++..+.
T Consensus 3 ~n~li~~~~~~~-----------~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAG-----------RVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCC-----------CHHHHHHHHHHHHHc
Confidence 445666788877 999999999987654
No 386
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.46 E-value=47 Score=29.96 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 58 INEAISKFEEALVIDPAKHYTL----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~----~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
.++|++.|++++++.|.+.++= -.+-.+++.+| +|++-++.|++.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~-----------~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG-----------NYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc-----------cHHHHHHHHHHHH
Confidence 3999999999999999998743 33555677777 7777666666554
No 387
>PF13041 PPR_2: PPR repeat family
Probab=49.27 E-value=61 Score=19.93 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE--EPTNELYQKSL 127 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l--~P~~~~y~kAl 127 (200)
-.|..+=..|.+.| ++++|.+.|++..+. .|+...|...+
T Consensus 4 ~~yn~li~~~~~~~-----------~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 4 VTYNTLISGYCKAG-----------KFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHHCc-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566777888888 999999999999865 57776665544
No 388
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=47.42 E-value=65 Score=31.44 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC-------CHHHHHH
Q 028992 59 NEAISKFEEALVI-----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-------NELYQKS 126 (200)
Q Consensus 59 ~eAi~~le~AL~l-----dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~-------~~~y~kA 126 (200)
..+++.|++|+.. +-.+..-|.++|..|+.++ +|.+|+.++-.|-+.=-. -+.|+.-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~-----------~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEf 364 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHK-----------RYREALRSWAEAADVIRKYNYSREDEEIYKEF 364 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHTTSB--GGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHH-----------HHHHHHHHHHHHHHHHHHcccCccHHHHHHHH
Confidence 4556666666644 4445566778999999988 999999999998765322 2488888
Q ss_pred HHhCCCChHHHHHHHHH
Q 028992 127 LEVSTKAPELHMELHKH 143 (200)
Q Consensus 127 le~~~k~~e~~~~l~~~ 143 (200)
+++. -++-.++.+.
T Consensus 365 leIA---neLiP~~lk~ 378 (618)
T PF05053_consen 365 LEIA---NELIPNVLKS 378 (618)
T ss_dssp HHHH---HTHHHHHHHH
T ss_pred HHHH---HHHHHHHHHh
Confidence 8886 3444444443
No 389
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.33 E-value=37 Score=25.95 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 59 NEAISKFEEAL--VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 59 ~eAi~~le~AL--~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
.++...|+... .|--+.+.-|...+..+...| ++++|.+.|+++|
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~-----------~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG-----------NFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT------------HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhC
Confidence 47777777665 456667777778888888888 9999999999876
No 390
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.28 E-value=79 Score=30.54 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHhcCcccCChHHhhcC-HHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPA----KHYTLWSLGNAHTSCGFLTADLSEAKGD-FDKAS 107 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~----~~~a~~~LG~a~~~~G~l~~~~~~a~~~-~d~A~ 107 (200)
..+|.++..+|+. ..|..+|..+++- .-+ -|.|+|.||..|.++| . +++|.
T Consensus 453 lL~g~~lR~Lg~~----------~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~-----------g~~~e~~ 511 (546)
T KOG3783|consen 453 LLKGVILRNLGDS----------EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLG-----------GGLKEAR 511 (546)
T ss_pred HHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcc-----------cChHHHH
Confidence 5678999999987 8899999887732 222 3579999999999987 6 99999
Q ss_pred HHHHHHHHhCCCCH
Q 028992 108 ECFQRAVDEEPTNE 121 (200)
Q Consensus 108 ~~fqkAl~l~P~~~ 121 (200)
++..+|=+..-+++
T Consensus 512 ~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 512 ALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHhhccccc
Confidence 99999988887765
No 391
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.68 E-value=1.6e+02 Score=26.29 Aligned_cols=96 Identities=16% Similarity=0.043 Sum_probs=61.2
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhc
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA-HTSC 89 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a-~~~~ 89 (200)
...+-+|+-.+|.++..+|.+.+....+-.+|..+|-. ..|...|+. |.+.---.|.+-.+..- +...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~----------~~A~~~~~~-L~iK~IQ~DTL~h~~~~r~~~~ 264 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAG----------SLALEHYES-LDIKNIQLDTLGHLILDRLSTL 264 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHh-cChHHHHHHHhHHHHHHHHhcc
Confidence 34567888999999999999999999999999999888 888888853 33322222222111111 1112
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
|...... ...++.+..+|..+...-|+.
T Consensus 265 ~~~~~~~---~~~~~~~~~fy~~~~~~~~e~ 292 (365)
T PF09797_consen 265 GPFKSAP---ENLLENALKFYDNSEKETPEF 292 (365)
T ss_pred Ccccccc---hHHHHHHHHHHHHHHHHHHHH
Confidence 2111111 246777888888777765554
No 392
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.48 E-value=1.5e+02 Score=28.78 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH--------hcCCcccccccccHHHHHHHHHHHHHh---CCC
Q 028992 12 LLSEHNRKTAEANYAK------DPLDADNLTRWGEALLE--------LSQFESVSDSKKIINEAISKFEEALVI---DPA 74 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~--------l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~ 74 (200)
++|++|.++.++++.+ .|.+..++..+-..+++ .|++ .+|++....+... -|.
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~----------~~al~~i~dm~~w~~r~p~ 358 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY----------VEALEEIVDMKNWCTRFPT 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHhCCc
Confidence 5888999988888753 34455666655555554 4555 7777766655543 555
Q ss_pred -------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 75 -------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 75 -------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
.+..++.+|.--.+.+ .|+.|...|..|+++--
T Consensus 359 ~~Llr~~~~~ih~LlGlys~sv~-----------~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 359 PLLLRAHEAQIHMLLGLYSHSVN-----------CYENAEFHFIEATKLTE 398 (629)
T ss_pred hHHHHHhHHHHHHHHhhHhhhcc-----------hHHHHHHHHHHHHHhhh
Confidence 4456777888777766 89999999998887743
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.38 E-value=77 Score=29.11 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=49.4
Q ss_pred HHHhchHHHHHHHHHHHHhh----CCCCHHHH--HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAK----DPLDADNL--TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~----~P~d~~~l--~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
.+++...++|++..++..+. +-.|+-.+ +..|.++++.++. ..+++.+++..+.++....+.|+=+.-+|.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DL---k~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDL---KEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 35555666777766665532 22244444 4555666655554 334566777777777777888877778888
Q ss_pred HHHHHHh
Q 028992 82 LGNAHTS 88 (200)
Q Consensus 82 LG~a~~~ 88 (200)
++.-|++
T Consensus 162 lssqYyk 168 (380)
T KOG2908|consen 162 LSSQYYK 168 (380)
T ss_pred HHHHHHH
Confidence 8887766
No 394
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=45.59 E-value=4.5 Score=23.33 Aligned_cols=25 Identities=28% Similarity=0.834 Sum_probs=18.0
Q ss_pred hhhHHHHHHH-HHHHHHHhhcCCCCC
Q 028992 173 IFGWAILAVG-IVAWVGMANSRIPPP 197 (200)
Q Consensus 173 ~~g~~~l~~~-~~~~~~~~~~~~~~~ 197 (200)
+..|.=++-+ -++|+-+|++.+|+|
T Consensus 3 vaaWlPfaraaAIGW~p~a~~~lP~P 28 (28)
T PF11601_consen 3 VAAWLPFARAAAIGWLPLAQQPLPPP 28 (28)
T ss_dssp CHTTHHHHHHHHTTTSSTTSSSSSSS
T ss_pred chhhhhHHHHHhhcceeeccCCCCCC
Confidence 4567666544 788999999888843
No 395
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=45.51 E-value=74 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
....+..++..+..++.+++.+..|..+|...
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 48999999999999998888888888888764
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.31 E-value=48 Score=31.19 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 75 ~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
-...+|.+|.+-..++ +|..|.+||-+|++..|.+.
T Consensus 246 ~ARY~yY~GrIkaiql-----------dYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQL-----------DYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHhhHHHhhc-----------chhHHHHHHHHHHHhCcchh
Confidence 3456678999999988 99999999999999999865
No 397
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.80 E-value=1.8e+02 Score=33.11 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~ 109 (200)
.-+++|...+.+-...|++ +.|-..+-.|.+.. .+.++...+..+-..| +-..|+..
T Consensus 1668 ~~ge~wLqsAriaR~aG~~----------q~A~nall~A~e~r--~~~i~~E~AK~lW~~g-----------d~~~Al~~ 1724 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHL----------QRAQNALLNAKESR--LPEIVLERAKLLWQTG-----------DELNALSV 1724 (2382)
T ss_pred hhHHHHHHHHHHHHhcccH----------HHHHHHHHhhhhcc--cchHHHHHHHHHHhhc-----------cHHHHHHH
Confidence 3456777777777667777 88888888888777 6677778888888877 88888888
Q ss_pred HHHHHHhC-CCCH---------------------------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 110 FQRAVDEE-PTNE---------------------------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 110 fqkAl~l~-P~~~---------------------------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
.|+.+..+ |++. .|+.+.++.|+--.-|+.++.-+
T Consensus 1725 Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1725 LQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 88888554 3311 67777778777777777777433
No 398
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=44.70 E-value=97 Score=24.52 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCcccCChHHh
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---------------HYTLWSLGNAHTSCGFLTADLSEA 99 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---------------~~a~~~LG~a~~~~G~l~~~~~~a 99 (200)
++.+|..-+..+.+ -.+|-+|++|+.+.-+- .-.--||+..+..+|
T Consensus 4 htllAd~a~~~~~~----------l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~g--------- 64 (140)
T PF10952_consen 4 HTLLADQAFKEADP----------LRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQG--------- 64 (140)
T ss_pred HHHHHHHHhhcccH----------HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcC---------
Confidence 45566666665555 67777777777653221 112247888888888
Q ss_pred hcCHHHHHHHHHHHHHh
Q 028992 100 KGDFDKASECFQRAVDE 116 (200)
Q Consensus 100 ~~~~d~A~~~fqkAl~l 116 (200)
+-+=.++|++-|-+.
T Consensus 65 --d~~yELkYLqlASE~ 79 (140)
T PF10952_consen 65 --DSDYELKYLQLASEK 79 (140)
T ss_pred --ChHHHHHHHHHHHHH
Confidence 888889998876543
No 399
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=44.51 E-value=63 Score=22.54 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhC
Q 028992 58 INEAISKFEEALVID 72 (200)
Q Consensus 58 ~~eAi~~le~AL~ld 72 (200)
+++|+..+.+|++.|
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367777777775543
No 400
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=43.17 E-value=99 Score=31.39 Aligned_cols=72 Identities=24% Similarity=0.197 Sum_probs=50.1
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
--++..|+|+++|... ....+...+|..+.+| ++ +|...+.-|+++..+=.+|..+++
T Consensus 807 a~~~~We~A~~yY~~~--------~~~e~~~ecly~le~f----------~~----LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 807 AEMMEWEEAAKYYSYC--------GDTENQIECLYRLELF----------GE----LEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHhc--------cchHhHHHHHHHHHhh----------hh----HHHHHHhcCcccchHHHHHHHHHh
Confidence 3455667777776552 2234566777777666 33 555556668999988899999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
.| --++|.++|-|.
T Consensus 865 vG-----------MC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 865 VG-----------MCDQAVEAYLRR 878 (1189)
T ss_pred hc-----------hHHHHHHHHHhc
Confidence 88 888888877653
No 401
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.84 E-value=48 Score=25.61 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=26.0
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+|..+...| ++++|..+|-+||..-|+-.
T Consensus 68 ~lGE~L~~~G-----------~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQG-----------DYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT------------HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCC-----------CHHHHHHHHHHHHHhCCCHH
Confidence 5899998888 99999999999999988765
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.22 E-value=53 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=34.2
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~ 48 (200)
-+.|.+|.+..++++.+||.+.+.+..+=..|..+|+-
T Consensus 292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 35789999999999999999999999999999988875
No 403
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=42.03 E-value=2.8e+02 Score=28.36 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=57.1
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+++.+++-+..-+..-++-|..+.+|..|......+.+- ....++...|++|+. |-+.+..|...++-....
T Consensus 125 k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s-------~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~ 196 (881)
T KOG0128|consen 125 KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQS-------EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGF 196 (881)
T ss_pred HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhc
Confidence 345566666666666777888888888888887776553 122677777788774 344444444444433332
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+ .- ..-.++|+.-...|.+|+.-
T Consensus 197 ~--~~--~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 197 G--NV--AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred c--cc--ccccccchhhhHHHHHHHhh
Confidence 2 11 22234677777777777653
No 404
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.50 E-value=86 Score=30.30 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcc
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l 92 (200)
++..+......++.|+.+--+..-+..+...|+- +.|+..++..+++.=+ ++-.+|.+|-++..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~----------eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~-- 317 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNS----------EAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQH-- 317 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccH----------HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4555556666678899999999999999887765 8899988888772111 4556677777776655
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|..|..+|.+..+++-=+.
T Consensus 318 ---------~~~~aad~~~~L~desdWS~ 337 (546)
T KOG3783|consen 318 ---------QYSRAADSFDLLRDESDWSH 337 (546)
T ss_pred ---------HHHHHhhHHHHHHhhhhhhH
Confidence 89999999998888765444
No 405
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=41.19 E-value=1.2e+02 Score=30.92 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=62.7
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
+|-+++.--+.-+..++.-+.+++-+-..+..|=..+...|.+ ++-...-++.-++-|..+..|.....-
T Consensus 87 sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl----------~kl~~ar~~~~~~~pl~~~lWl~Wl~d 156 (881)
T KOG0128|consen 87 SDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDL----------EKLRQARLEMSEIAPLPPHLWLEWLKD 156 (881)
T ss_pred CCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcch----------HHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3445666666777888888999999999999999999998887 555555566677888888888665544
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
.+... .+ ++-.++...|++|+
T Consensus 157 ~~~mt-~s-------~~~~~v~~~~ekal 177 (881)
T KOG0128|consen 157 ELSMT-QS-------EERKEVEELFEKAL 177 (881)
T ss_pred HHhhc-cC-------cchhHHHHHHHHHh
Confidence 43322 01 24555555555555
No 406
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=40.88 E-value=19 Score=32.97 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+..|+.....++..++....++++.|.++..+.++ ++|++.++.+...+|++..+.-.+-++-..
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~----------~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNY----------DEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhhhch----------hhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 344455555566668888999999999999998888 999999999999999999877666555443
No 407
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=40.38 E-value=3.7e+02 Score=26.37 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
-+.++..|..-+..-|..-.-|-..+.--..+|.. ++++..||+++.--|...+.|..+-+-+.. ..
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~----------~~s~~Vfergv~aip~SvdlW~~Y~~f~~n---~~ 127 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNA----------ENSVKVFERGVQAIPLSVDLWLSYLAFLKN---NN 127 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---cC
Confidence 37788888888999999888888888777776666 999999999999999888877765544433 23
Q ss_pred CChHHhhcCHHHHHHH----------HHHHHHhCCCCH-------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 94 ADLSEAKGDFDKASEC----------FQRAVDEEPTNE-------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~----------fqkAl~l~P~~~-------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
++.....+.|+.|+.+ ..+.++..-... .|++-|++--+.-..|...-++.+.|
T Consensus 128 ~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 128 GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 4444445555555442 233333321111 66666666444444444444555544
No 408
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=39.83 E-value=16 Score=21.34 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHHHHHH--HHHhhc
Q 028992 170 KYDIFGWAILAVGIVAW--VGMANS 192 (200)
Q Consensus 170 ~y~~~g~~~l~~~~~~~--~~~~~~ 192 (200)
+..++.|+ |..=++.| ||++|.
T Consensus 3 k~~lgcWi-lvLfvatwsdvglcKK 26 (29)
T PF11587_consen 3 KSHLGCWI-LVLFVATWSDVGLCKK 26 (29)
T ss_dssp TTTTTTHH-HHHHHHHHHHHTTSSS
T ss_pred cccccHHH-HHHHHHHHhhhccccC
Confidence 34566774 44556667 999997
No 409
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.63 E-value=70 Score=27.10 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 59 NEAISKFEEALVIDP------AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 59 ~eAi~~le~AL~ldP------~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
...|+.|++|.+.-- ......+.+|.-|...| ++++|+++|+++...
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g-----------~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLG-----------DYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence 444555555554422 23345568999999999 999999999999544
No 410
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.89 E-value=1e+02 Score=28.15 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 59 NEAISKFEEALVIDPA---KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~---~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
++....|...++.-|+ .+-.|.|++.++-..| .+++.+.+|++||.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~-----------~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTG-----------PIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHcCCC
Confidence 6778888888877776 4567889999999988 999999999999987544
No 411
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.54 E-value=90 Score=26.44 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
..-...|.+|+..|+- ++|+..|++|+..+++.+.
T Consensus 160 ~~~elrGDill~kg~k----------~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 160 IVAELRGDILLAKGDK----------QEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHhhhHHHHcCch----------HHHHHHHHHHHHccCChHH
Confidence 3456789999999888 9999999999999866554
No 412
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=37.23 E-value=57 Score=32.44 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP-AKHYTLWSLGNA 85 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP-~~~~a~~~LG~a 85 (200)
-+--.+|..||.++++.+++ ..|.++|.+|+++.- +-|++.+.+-+.
T Consensus 584 iD~f~aW~AWGlA~Lk~e~~----------aaAR~KFkqafklkgedipdvi~diin~ 631 (1141)
T KOG1811|consen 584 IDTFGAWHAWGLACLKAENL----------AAAREKFKQAFKLKGEDIPDVIFDIINL 631 (1141)
T ss_pred CCcccHHHHHHHHHHHhhhH----------HHHHHHHHHHhCCCCCccchHHHHHHHh
Confidence 44567899999999999998 999999999999863 345666655443
No 413
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.75 E-value=2.8e+02 Score=28.75 Aligned_cols=92 Identities=10% Similarity=-0.157 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
-|++|+..+++. .--|.-|--+...+.+|.+++.+ +|-|.+|+-|++.-|++|..-...-.+-..+.
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 600 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH-- 600 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH--
Confidence 466777776653 23344444444444555556666 99999999999999999976543322211110
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.-...+-..|..+.--++..-|..-
T Consensus 601 ----~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 601 ----ESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCcccc
Confidence 0000144456666666666666653
No 414
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.37 E-value=88 Score=29.04 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.+=|..-..||+|||+...+|..|+.--.. -.-+|.+.|++|++.
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~-------------Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEAT-------------TIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhhh-------------hHHHHHHHHHHHHHH
Confidence 455667788999999999999888764333 345566666666654
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.20 E-value=2.6e+02 Score=23.59 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
.+...+|.-++..|++ ++|+..|+.+...--+ ..++++.|-.|+...| +.++.
T Consensus 179 ~l~~~~A~ey~~~g~~----------~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~-----------~~~~~ 237 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDY----------DKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG-----------DVEDY 237 (247)
T ss_pred HHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-----------CHHHH
Confidence 3446778888888888 9999999999655322 3456677778888877 77776
Q ss_pred HHHHH
Q 028992 107 SECFQ 111 (200)
Q Consensus 107 ~~~fq 111 (200)
+.+.=
T Consensus 238 l~~~l 242 (247)
T PF11817_consen 238 LTTSL 242 (247)
T ss_pred HHHHH
Confidence 66543
No 416
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=34.52 E-value=3.2e+02 Score=24.05 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc----------cC-ChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL----------TA-DLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 60 eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l----------~~-~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+-.+.++.=++-.|++..++..+|+.+...+.. +. ....+....+.|..++.+|++++|...
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 456677777889999999999999998765532 11 112344467778888888888888775
No 417
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=34.28 E-value=1.8e+02 Score=23.31 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992 102 DFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 102 ~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
++.+|++-+--...-+|+.-.||.|++..|++.+.-..+.-...
T Consensus 16 r~~~A~Dt~~~l~~ae~gsRA~r~A~~elPEAl~till~~ll~~ 59 (144)
T PF01350_consen 16 RFQEALDTLYTLMTAEPGSRAYRMALEELPEALETILLVVLLGV 59 (144)
T ss_pred HHHHHHHHHHhhhhCCCCcHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999888888877775554
No 418
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.24 E-value=1.9e+02 Score=22.15 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
|--|.+|-.||..|...| +-|.|..-|+.--.+-|++..|-.-|-
T Consensus 69 ~vpPG~HAhLGlLys~~G-----------~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSG-----------KDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred CCCCcHHHHHHHHHhhcC-----------ChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 445678889999999999 999999999998889999887765553
No 419
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=34.23 E-value=2.5e+02 Score=24.74 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcc---ccc--------ccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 17 NRKTAEANYAKDPLDADNLTRWGEALLELS-QFES---VSD--------SKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 17 A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~---~~~--------~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
-....+.=++..|++..++...|..+...+ +.+. ..+ .....+.|+..|.+|+.++|+..-++..+-+
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 344455556789999999999999887743 1111 111 1134799999999999999999999988877
Q ss_pred HHHhcC
Q 028992 85 AHTSCG 90 (200)
Q Consensus 85 a~~~~G 90 (200)
+-..+|
T Consensus 142 ~s~~fg 147 (277)
T PF13226_consen 142 ISAYFG 147 (277)
T ss_pred HHhhcC
Confidence 776766
No 420
>KOG4449 consensus Translocase of outer mitochondrial membrane complex, subunit TOM7 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.39 E-value=33 Score=22.73 Aligned_cols=18 Identities=39% Similarity=0.896 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCC
Q 028992 175 GWAILAVGIVAWVGMANSRIPP 196 (200)
Q Consensus 175 g~~~l~~~~~~~~~~~~~~~~~ 196 (200)
||+= +|-|+|||+..-||
T Consensus 25 G~IP----~VlyLG~a~~a~~P 42 (53)
T KOG4449|consen 25 GWIP----LVLYLGFAFGARPP 42 (53)
T ss_pred chhh----HHHHhhhhhcCCCC
Confidence 7765 48899999977664
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.26 E-value=2.3e+02 Score=24.37 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
|.+.+...++..++.....- .++.+.-++.||.-- +.-.-.-.+++.|..+|..|..-| +|.+|..
T Consensus 46 ~~~~~~~~rl~~l~~~~~~~--~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~-----------~~~~A~~ 111 (260)
T PF04190_consen 46 PVDEESIARLIELISLFPPE--EPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEG-----------NYYEAER 111 (260)
T ss_dssp --SHHHHHHHHHHHHHS-TT---TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT------------HHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhc-----------cHHHHHH
Confidence 55666666777766654321 112223344444433 211122247789999999999987 8888888
Q ss_pred HHHHH
Q 028992 109 CFQRA 113 (200)
Q Consensus 109 ~fqkA 113 (200)
+|-..
T Consensus 112 Hfl~~ 116 (260)
T PF04190_consen 112 HFLLG 116 (260)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 87543
No 422
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.79 E-value=88 Score=16.98 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.|..+-.++.+.| +++.|...|+.-.+.
T Consensus 3 ty~~ll~a~~~~g-----------~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAG-----------DPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCC-----------CHHHHHHHHHHHHHh
Confidence 4566777888888 999999999886653
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.04 E-value=1.9e+02 Score=26.73 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+..|-..|..+..+| +.++|...|++|+.+.++-.
T Consensus 365 ~~~h~~RadlL~rLg-----------r~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 365 HLYHAARADLLARLG-----------RVEEARAAYDRAIALARNAA 399 (415)
T ss_pred cccHHHHHHHHHHhC-----------ChHHHHHHHHHHHHhcCChH
Confidence 344556788888988 99999999999999988754
No 424
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=30.93 E-value=37 Score=25.69 Aligned_cols=12 Identities=50% Similarity=1.176 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 028992 177 AILAVGIVAWVG 188 (200)
Q Consensus 177 ~~l~~~~~~~~~ 188 (200)
++|.+|+|+||+
T Consensus 40 ~~lv~glvgW~~ 51 (104)
T PF11460_consen 40 ALLVLGLVGWVS 51 (104)
T ss_pred HHHHHHHHHHHh
Confidence 478888999986
No 425
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=30.81 E-value=16 Score=30.40 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 028992 173 IFGWAILAVGIVAWVGMAN 191 (200)
Q Consensus 173 ~~g~~~l~~~~~~~~~~~~ 191 (200)
.-||+||+++|+.|+.+-|
T Consensus 35 ~yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 35 SYGWYILFGCILLYLLWQK 53 (190)
T ss_dssp -------------------
T ss_pred HhCHHHHHHHHHHHHHHHH
Confidence 5699999999999876544
No 426
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=4e+02 Score=23.89 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIIN-EAISKFEEALVIDPAKHYTLWSLGNAHTSCG-- 90 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~-eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G-- 90 (200)
..+-++...+..+-+|.+-++|+..-.+.-.++.. . .-++..+.+|..|-++-.+|-..-=+....+
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~----------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP----------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc----------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 34455677788889999999999999888888776 3 5577778888888888777754444443333
Q ss_pred -------------------------cc-cC-ChHHhhcCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 028992 91 -------------------------FL-TA-DLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSLE 128 (200)
Q Consensus 91 -------------------------~l-~~-~~~~a~~~~d~A~~~fqkAl~l~P~~~---~y~kAle 128 (200)
|+ +. ....-+...+.=+.+-.+.|...|+|+ .|.+.+-
T Consensus 164 ~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 00 00 111112244556667777777777777 5555553
No 427
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=29.45 E-value=3.4e+02 Score=24.80 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHHh--CCC---------------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 56 KIINEAISKFEEALVI--DPA---------------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 56 ~~~~eAi~~le~AL~l--dP~---------------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
..+..||..|+.-+.. +|+ --.|++.+|.+|.+ +++++..+-.++..+++.+|+..++.--
T Consensus 263 ~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K--~~~~~~~~~~~~l~~sl~~y~~vv~y~~ 340 (371)
T PF12309_consen 263 QLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSK--LITSDPKEQLENLEKSLEYYKWVVDYCE 340 (371)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHcc--ccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999888766 444 12367778877776 4688888999999999999999997643
Q ss_pred CC
Q 028992 119 TN 120 (200)
Q Consensus 119 ~~ 120 (200)
.+
T Consensus 341 ~~ 342 (371)
T PF12309_consen 341 KH 342 (371)
T ss_pred hC
Confidence 33
No 428
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.21 E-value=42 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.909 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHHHh
Q 028992 171 YDIFGWAILAVGIVAWVGMA 190 (200)
Q Consensus 171 y~~~g~~~l~~~~~~~~~~~ 190 (200)
....-|+.|+ +.||||+
T Consensus 82 ~~~LPW~LL~---lSW~gF~ 98 (103)
T PF11169_consen 82 SSWLPWGLLV---LSWIGFI 98 (103)
T ss_pred ccchhHHHHH---HHHHHHH
Confidence 3467788775 6888886
No 429
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.15 E-value=1.1e+02 Score=26.33 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=18.5
Q ss_pred ccccHHHHHHHHHHHHHhCCCC
Q 028992 54 SKKIINEAISKFEEALVIDPAK 75 (200)
Q Consensus 54 ~~~~~~eAi~~le~AL~ldP~~ 75 (200)
..+....|+..|++|+.+||+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3456689999999999999985
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=28.34 E-value=3.5e+02 Score=27.84 Aligned_cols=64 Identities=25% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992 37 RWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-----TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 37 ~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-----a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq 111 (200)
..|.+.+..+++ ++|+...+.++..=|.+.. ++..+|.+....| ++++|..+.+
T Consensus 463 L~a~val~~~~~----------e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G-----------~~~~Al~~~~ 521 (894)
T COG2909 463 LRAQVALNRGDP----------EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG-----------ELTQALALMQ 521 (894)
T ss_pred HHHHHHHhcCCH----------HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc-----------hHHHHHHHHH
Confidence 344455555555 9999999999998887654 5567888888888 9999999999
Q ss_pred HHHHhCCCCH
Q 028992 112 RAVDEEPTNE 121 (200)
Q Consensus 112 kAl~l~P~~~ 121 (200)
++.+..-.++
T Consensus 522 ~a~~~a~~~~ 531 (894)
T COG2909 522 QAEQMARQHD 531 (894)
T ss_pred HHHHHHHHcc
Confidence 9998866555
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.48 E-value=4.4e+02 Score=23.96 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-CCCCH-HHHHHHHHHHH--hcCcccCChHHhhcCHHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKH-YTLWSLGNAHT--SCGFLTADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-dP~~~-~a~~~LG~a~~--~~G~l~~~~~~a~~~~d~A~~~fq 111 (200)
...+..++..++| ..|...|+..... .++.. ..+..|..+|. ..- ++++|.++++
T Consensus 135 ~~~a~~l~n~~~y----------~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-----------d~~~A~~~l~ 193 (379)
T PF09670_consen 135 WRRAKELFNRYDY----------GAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-----------DHKEALEYLE 193 (379)
T ss_pred HHHHHHHHhcCCH----------HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Confidence 4455556666667 9999999999885 44443 45556666664 345 8999999999
Q ss_pred HHHHh
Q 028992 112 RAVDE 116 (200)
Q Consensus 112 kAl~l 116 (200)
+.+..
T Consensus 194 ~~~~~ 198 (379)
T PF09670_consen 194 KLLKR 198 (379)
T ss_pred HHHHH
Confidence 88865
No 432
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.43 E-value=1.3e+02 Score=23.64 Aligned_cols=37 Identities=14% Similarity=-0.023 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~ 48 (200)
+.|.-|.+.+..++..+|+|.++....+.+|..++.-
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4577788889999999999999999999999987753
No 433
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=26.63 E-value=1.6e+02 Score=27.15 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
.|...|..|.++|+. +||.+.|++|+.+-++..+..|.+...
T Consensus 367 ~h~~RadlL~rLgr~----------~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 367 YHAARADLLARLGRV----------EEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred cHHHHHHHHHHhCCh----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 455667777777777 999999999999999999988776654
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.06 E-value=2.6e+02 Score=21.23 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH
Q 028992 16 HNRKTAEANYAKD--PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (200)
Q Consensus 16 ~A~~~~e~a~~~~--P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL 69 (200)
.+++.+.-.+... -..+..+..||..+...+++ ++|.+.|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~----------~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF----------KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHhhC
Confidence 5566666655533 55788888888888888888 99999998875
No 435
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=25.32 E-value=2.3e+02 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH
Q 028992 23 ANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (200)
Q Consensus 23 ~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ 70 (200)
...+-+..+|+.+..+|.||.++|.. .+|-+.+.+|=+
T Consensus 111 ~l~kn~~~~p~~L~kia~Ay~klg~~----------r~~~ell~~ACe 148 (161)
T PF09205_consen 111 ELKKNEEINPEFLVKIANAYKKLGNT----------REANELLKEACE 148 (161)
T ss_dssp HH-----S-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred HHhhccCCCHHHHHHHHHHHHHhcch----------hhHHHHHHHHHH
Confidence 33334566899999999999999987 788888777754
No 436
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=24.98 E-value=2.3e+02 Score=20.41 Aligned_cols=46 Identities=17% Similarity=0.050 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
+..++|.+.+.--=.+-|+..+-..|-+.+|+.+| +-.+|+....-
T Consensus 20 ~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~-----------~~~~A~~~L~~ 65 (79)
T TIGR02498 20 SLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLN-----------HKNDAVKLLEN 65 (79)
T ss_pred CcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcC-----------cHHHHHHHHhc
Confidence 34588888888877899999999999999999998 88888877654
No 437
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=24.88 E-value=2.7e+02 Score=20.06 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS 46 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~ 46 (200)
..+-.+++.+..+++.+|+||..+..+-..+.+..
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn 55 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYN 55 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 45667778888889999999998877766665543
No 438
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=24.79 E-value=2.9e+02 Score=20.33 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=28.2
Q ss_pred cccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 51 VSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 51 ~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
..+-+..+...+..+++.-..++.--.++|.+|.+...
T Consensus 66 i~~l~~~~~~~l~~~e~~~~~~~~Y~~~lwllsLgiLL 103 (117)
T PF08928_consen 66 IEELKPYYPNILDYFEEIWDENDGYIYMLWLLSLGILL 103 (117)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 33455667888999999777776677888888877665
No 439
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=24.52 E-value=2.5e+02 Score=22.45 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=27.4
Q ss_pred CCCCHHHH-------HHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992 28 DPLDADNL-------TRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (200)
Q Consensus 28 ~P~d~~~l-------~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a 78 (200)
+|+|.+.. ..+|..|+..| +. ++|+.+|-.||.+-|+-.+.
T Consensus 79 ~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~----------~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 79 DPTDPSEKEAFFLQEVQLGEELMAQGTNV----------DEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCch----------HHHHHHHHHHHHhCCCHHHH
Confidence 45576543 45677776665 45 77888888888887776554
No 440
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.41 E-value=3.5e+02 Score=22.87 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHhchHHHHHHHHHHHHh-----hCCCCHHHH---HHHHHHHHH-hcCCcccccccccHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYA-----KDPLDADNL---TRWGEALLE-LSQFESVSDSKKIINEAISKFEEAL 69 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~-----~~P~d~~~l---~~lG~al~~-l~~~~~~~~~~~~~~eAi~~le~AL 69 (200)
.+|...-+.|.+.|+.|+. +.|.+|.-+ .|+++-|.+ +++. ++|+..-++|+
T Consensus 136 ~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~----------~~A~~ia~~af 196 (236)
T PF00244_consen 136 DEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDP----------EKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-H----------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHH
Confidence 3666677788888888774 567777432 344444433 3333 66666665554
No 441
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.62 E-value=1.8e+02 Score=31.00 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCCC
Q 028992 9 DRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAK 75 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~~ 75 (200)
.|++.+++|+....+++-. .|++...+.+++...+...+. ..|...+.+++.+ .|++
T Consensus 984 ~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~h 1053 (1236)
T KOG1839|consen 984 NRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNL----------SGALKSLNRALKLKLLSSGEDH 1053 (1236)
T ss_pred hhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCc----------cchhhhHHHHHHhhccccCCCC
Confidence 3555566666665555532 266777777777666655544 5666666666655 3444
Q ss_pred H---HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 76 H---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 76 ~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
| ....+++.++...+ +++.|+.|.+.|+.++
T Consensus 1054 P~~a~~~~nle~l~~~v~-----------e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVE-----------EADTALRYLESALAKN 1087 (1236)
T ss_pred CchhhhhhHHHHHHhhHH-----------HHHHHHHHHHHHHHHH
Confidence 4 44467888877766 9999999999999965
No 442
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=23.32 E-value=1.1e+02 Score=24.04 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=16.1
Q ss_pred chhhhhhhHHHHHHHHHHHH-HHhhcCC-CCCC
Q 028992 168 DLKYDIFGWAILAVGIVAWV-GMANSRI-PPPP 198 (200)
Q Consensus 168 ~~~y~~~g~~~l~~~~~~~~-~~~~~~~-~~~~ 198 (200)
|.+ -|+|.+++++||-.|| ++.+..+ ||+|
T Consensus 73 ewk-~v~~~~~~~i~~s~~~~~~~r~~~~~~~P 104 (136)
T cd00922 73 EWK-TVFGGVLAFIGITGVIFGLQRAFVYGPKP 104 (136)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 443 4666677777765553 3344444 4444
No 443
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=23.23 E-value=47 Score=23.68 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=13.7
Q ss_pred cccccchhhhhhhHHHH
Q 028992 163 KKKSSDLKYDIFGWAIL 179 (200)
Q Consensus 163 ~~~~~~~~y~~~g~~~l 179 (200)
-|-..++-|||+.|+++
T Consensus 34 ~ky~t~l~~DvL~~~ll 50 (77)
T PF11732_consen 34 LKYFTDLGYDVLTFCLL 50 (77)
T ss_pred HhhcchhhHHHHHHHHH
Confidence 35567899999999875
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.16 E-value=5.7e+02 Score=23.21 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHhh-CCCC-HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 12 LLSEHNRKTAEANYAK-DPLD-ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~-~P~d-~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
..|..|.+.++..... .++. .+.+..+..+|...-+|+ +++|.++|+..+..
T Consensus 145 ~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd--------~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 145 YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD--------HKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHH
Confidence 4788999999888875 3333 246777777777766652 36777777766543
No 445
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=1.3e+02 Score=28.62 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=35.9
Q ss_pred hhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 5 ~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
..+++|+-.+..-|..|..|+ ...+.|.++-++++. ++|+..|+++|.+
T Consensus 3 e~~~~~~~~~a~Ir~ayk~A~--------~~V~~gl~~dE~~~~----------e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 3 ESIFMRIPDTAQIRAAYKGAY--------ASVEQGLCYDEVNDW----------ENALAMYEKGLNL 51 (560)
T ss_pred cccccCchHHHHHHHHHHHHH--------HHHHhhcchhhhcCH----------HHHHHHHHHHHHH
Confidence 455667777777777777765 456788888888887 7777777777754
No 446
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=22.63 E-value=3.5e+02 Score=26.07 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~ 67 (200)
.|.++.-+..-..+.+| .+.++-.+|.++.+..++ +||-.+|..
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y----------~eA~~~l~~ 520 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY----------QEAWEYLQK 520 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH----------HHHHHHHHh
Confidence 45556666666778999 999999999999998887 999988865
No 447
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=22.44 E-value=2.1e+02 Score=18.84 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=10.9
Q ss_pred ccchhhh-----hhhHHHHHHH
Q 028992 166 SSDLKYD-----IFGWAILAVG 182 (200)
Q Consensus 166 ~~~~~y~-----~~g~~~l~~~ 182 (200)
.++|+|| ++|-++-|+-
T Consensus 4 ~~pF~YDy~tLrigGLi~A~vl 25 (50)
T PF02038_consen 4 DDPFYYDYETLRIGGLIFAGVL 25 (50)
T ss_dssp CSGGGGCHHHHHHHHHHHHHHH
T ss_pred CCCCccchhHhhccchHHHHHH
Confidence 4899999 5565544433
No 448
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.24 E-value=7.8e+02 Score=24.43 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhC------------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----------
Q 028992 14 SEHNRKTAEANYAKD------------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV----------- 70 (200)
Q Consensus 14 fe~A~~~~e~a~~~~------------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~----------- 70 (200)
|+++-..+..+.... |-+.+.+..++.+...+|++ .-+.+.++.++..|++|+.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~---e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDR---EMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcch---hhHHHHHHHHHHHHHHHhcccccccccccc
Q ss_pred ---hCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC-CH---------------HHHHHHHhCC
Q 028992 71 ---IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-NE---------------LYQKSLEVST 131 (200)
Q Consensus 71 ---ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~-~~---------------~y~kAle~~~ 131 (200)
+.|.|-.-|.+|=.-...+. -+|-+.-|.++.+-.+.++|. ++ .|.=-+++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~--------~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~- 401 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLA--------QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELS- 401 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHH--------hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHH-
Q ss_pred CChHHHHHHH
Q 028992 132 KAPELHMELH 141 (200)
Q Consensus 132 k~~e~~~~l~ 141 (200)
+.++.+.+|+
T Consensus 402 ~~~e~~n~l~ 411 (665)
T KOG2422|consen 402 NEPENMNKLS 411 (665)
T ss_pred HHHHhhccHh
No 449
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=21.96 E-value=73 Score=21.38 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALL 43 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~ 43 (200)
.+-++|++...++|.-||-+....+|...-..
T Consensus 11 ~Ra~eA~~~a~~aY~pdP~~Vt~~FN~~V~~~ 42 (56)
T PF04431_consen 11 KRAEEARKAALAAYVPDPENVTNEFNRHVHRA 42 (56)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999988876543
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.82 E-value=1.8e+02 Score=22.46 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL 79 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~ 79 (200)
..+|..|+..|++ ++|+.+|-.||.+-|+-.+.+
T Consensus 67 V~lGE~L~~~G~~----------~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 67 VQLGEQLLAQGDY----------EEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHTT-H----------HHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHhCCCH----------HHHHHHHHHHHHhCCCHHHHH
Confidence 5678888777766 899999999999988766543
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.39 E-value=2.6e+02 Score=30.01 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhc--CHHHHH
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKG--DFDKAS 107 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~--~~d~A~ 107 (200)
.++-..+.+|.+|+..++. .+|+.+|.+|+.---+. +++..+- ...++..++..+.+- .-..|.
T Consensus 918 lk~v~rfmlg~~yl~tge~----------~kAl~cF~~a~Sg~ge~-~aL~~lv---~~~~p~~~sv~dG~t~s~e~t~l 983 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEP----------VKALNCFQSALSGFGEG-NALRKLV---YFLLPKRFSVADGKTPSEELTAL 983 (1480)
T ss_pred hHHHHHHhhheeeecCCch----------HHHHHHHHHHhhccccH-HHHHHHH---HHhcCCCCchhcCCCCCchHHHH
Confidence 3455566777777776666 99999999998764443 2444332 222333232222111 112256
Q ss_pred HHHHHHHHhCCCCH-------HHHHHHHhC----CCChHHHHHHHHHHHh
Q 028992 108 ECFQRAVDEEPTNE-------LYQKSLEVS----TKAPELHMELHKHGIN 146 (200)
Q Consensus 108 ~~fqkAl~l~P~~~-------~y~kAle~~----~k~~e~~~~l~~~~~~ 146 (200)
+||.+++++=-.+. ..-+|++.. |..+-++.++-++.+.
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhld 1033 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLD 1033 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhc
Confidence 66666665522111 334555543 3334555566665553
No 452
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.09 E-value=5.1e+02 Score=25.52 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 74 AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 74 ~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
+...++|-+|.++..+| +-++|..+|+++..
T Consensus 344 ~~~rw~YW~aRa~~~~g-----------~~~~A~~~~~~~a~ 374 (644)
T PRK11619 344 EKDEWRYWQADLLLEQG-----------RKAEAEEILRQLMQ 374 (644)
T ss_pred cCHhhHHHHHHHHHHcC-----------CHHHHHHHHHHHhc
Confidence 56778888999988888 99999999999854
No 453
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.03 E-value=2.3e+02 Score=33.54 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
.++++.+|+|-+.+..|..++-+-+.+|..||.-+...=+ .-.....-...|++||=+|....
T Consensus 2822 ~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~--~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2822 LEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFN--KEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred HHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--ccCcccHHHHHHHHHHHHHhccc
Confidence 3688899999999999999999999999999997765321 11111333478999888888765
No 454
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.81 E-value=1e+02 Score=24.42 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHH--HhCCCCH--HHHHHHHhCCCChHHHHHHHHHH
Q 028992 101 GDFDKASECFQRAV--DEEPTNE--LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 101 ~~~d~A~~~fqkAl--~l~P~~~--~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
++|.+++.-|+-.. ++++++. .|...++..|+...+|..+...+
T Consensus 73 DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
No 455
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.71 E-value=1.5e+02 Score=27.58 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcC
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--------KHYTLWSLGNAHTSCG 90 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--------~~~a~~~LG~a~~~~G 90 (200)
+...|.-.+.++++ +.|+..|.+|..+--. ..+++|..|.+++..+
T Consensus 44 lv~~G~~~~~~~d~----------~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela 97 (400)
T KOG4563|consen 44 LVQAGRRALCNNDI----------DKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELA 97 (400)
T ss_pred HHHhhhHHHhcccH----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 9999999998877443 4578888999888877
No 456
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=20.37 E-value=1.5e+02 Score=28.59 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh-CCCC
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV-STKA 133 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~-~~k~ 133 (200)
+..++-|..|-.++-.||.+.. |.++++|.+ | +..+=++.-+.|+.++|..+.--++|+. .|++
T Consensus 264 ~d~edvi~ELg~aIfrDp~dGs--w~~AdaYLS-G-----------~Vr~KLK~akaAa~ldp~~ErNV~aL~~vqP~D 328 (637)
T COG4646 264 GDVEDVIDELGDAIFRDPEDGS--WHTADAYLS-G-----------QVRDKLKAAKAAAALDPVFERNVRALVEVQPAD 328 (637)
T ss_pred CCHHHHHHHHHHHHhcCccCCc--eEehhhhhh-h-----------hHHHHHHHHHHHhccChHhhhhhHHHhhcCccc
Confidence 3469999999999999999944 889999987 4 8888888899999999998877777753 4655
No 457
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=20.18 E-value=3.3e+02 Score=19.37 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq 111 (200)
...+|...+.-.=.+-|+.-.-+.|.+.+|+.++ +-.+|+....
T Consensus 9 L~~qa~aiLnvlPqLIpD~~~r~vC~alllfGLn-----------e~~~A~~~La 52 (75)
T PRK15356 9 LISQVHAMLPALTVIVPDKKLQLVCLALLLAGLN-----------EPLKAAKILS 52 (75)
T ss_pred hHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhcC-----------cHHHHHHHHh
Confidence 4578888888877899999999999999999988 8888887654
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.11 E-value=3e+02 Score=28.32 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 15 EHNRKTAEANYAK-DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 15 e~A~~~~e~a~~~-~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
++|+...-.++++ .|..++.+..-|.+|-.+ -+.+......-.+.|++-|++|++..|..... .|++..+...|
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDm-F~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM-FIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhh-hhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 4444444444443 356777777778877542 01111222344589999999999999986543 45555555444
Done!