Query 028992
Match_columns 200
No_of_seqs 175 out of 1362
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu2_A Mitochondrial import re 100.0 4.3E-36 1.5E-40 240.8 10.5 144 1-145 6-149 (158)
2 4gco_A Protein STI-1; structur 99.8 3.9E-18 1.3E-22 128.2 15.0 101 7-128 22-122 (126)
3 4ga2_A E3 SUMO-protein ligase 99.8 1.7E-18 5.8E-23 133.2 11.5 117 11-148 10-148 (150)
4 4gyw_A UDP-N-acetylglucosamine 99.8 6.3E-18 2.2E-22 162.1 17.3 121 8-149 19-160 (723)
5 2pl2_A Hypothetical conserved 99.8 1.8E-17 6.3E-22 134.0 15.1 131 8-149 15-166 (217)
6 2h6f_A Protein farnesyltransfe 99.8 6E-18 2E-22 150.7 13.2 121 8-149 107-249 (382)
7 3gyz_A Chaperone protein IPGC; 99.8 1.6E-17 5.5E-22 130.0 13.5 99 8-127 46-144 (151)
8 2pl2_A Hypothetical conserved 99.8 3.6E-17 1.2E-21 132.3 16.0 120 8-149 49-200 (217)
9 4gco_A Protein STI-1; structur 99.7 1.6E-17 5.4E-22 124.8 11.4 100 24-144 5-125 (126)
10 3vtx_A MAMA; tetratricopeptide 99.7 3.2E-16 1.1E-20 121.3 17.4 121 8-149 15-156 (184)
11 2h6f_A Protein farnesyltransfe 99.7 1.8E-16 6E-21 141.2 14.5 120 8-148 141-288 (382)
12 4ga2_A E3 SUMO-protein ligase 99.7 1.7E-16 5.7E-21 122.0 12.2 95 8-123 41-136 (150)
13 3upv_A Heat shock protein STI1 99.7 6E-16 2.1E-20 113.4 13.8 100 7-127 13-118 (126)
14 4i17_A Hypothetical protein; T 99.7 4.3E-16 1.5E-20 124.7 13.9 120 8-148 17-167 (228)
15 3gyz_A Chaperone protein IPGC; 99.7 4.3E-17 1.5E-21 127.6 7.5 93 8-121 12-104 (151)
16 2vgx_A Chaperone SYCD; alterna 99.7 5.1E-16 1.7E-20 119.4 13.2 93 8-121 31-123 (148)
17 1hxi_A PEX5, peroxisome target 99.7 2.9E-16 1E-20 116.9 10.7 94 7-121 26-119 (121)
18 2xcb_A PCRH, regulatory protei 99.7 4E-16 1.4E-20 117.8 11.6 96 8-124 28-123 (142)
19 3sz7_A HSC70 cochaperone (SGT) 99.7 5.4E-16 1.9E-20 119.1 12.4 100 8-128 21-122 (164)
20 4gcn_A Protein STI-1; structur 99.7 6.5E-16 2.2E-20 115.8 12.4 98 7-125 17-121 (127)
21 3vtx_A MAMA; tetratricopeptide 99.7 3E-16 1E-20 121.4 9.6 95 9-124 84-178 (184)
22 3k9i_A BH0479 protein; putativ 99.7 1.6E-16 5.3E-21 116.3 6.9 100 10-130 2-107 (117)
23 2hr2_A Hypothetical protein; a 99.6 5.2E-16 1.8E-20 124.1 10.0 94 7-121 20-136 (159)
24 3urz_A Uncharacterized protein 99.6 1.4E-15 4.7E-20 122.2 12.2 105 8-146 14-134 (208)
25 3rkv_A Putative peptidylprolyl 99.6 2.5E-15 8.6E-20 115.1 12.1 100 7-127 20-138 (162)
26 2vgx_A Chaperone SYCD; alterna 99.6 2.3E-15 7.9E-20 115.7 11.0 102 19-141 8-130 (148)
27 4i17_A Hypothetical protein; T 99.6 9E-15 3.1E-19 116.9 14.0 91 8-119 52-149 (228)
28 1w3b_A UDP-N-acetylglucosamine 99.6 1.5E-14 5.1E-19 123.9 16.1 121 8-149 213-354 (388)
29 4gyw_A UDP-N-acetylglucosamine 99.6 3.1E-15 1.1E-19 143.5 12.9 93 8-121 53-145 (723)
30 1w3b_A UDP-N-acetylglucosamine 99.6 2.5E-14 8.4E-19 122.5 16.6 40 9-48 78-117 (388)
31 1elw_A TPR1-domain of HOP; HOP 99.6 4.7E-14 1.6E-18 99.2 14.5 99 8-127 14-112 (118)
32 2xcb_A PCRH, regulatory protei 99.6 2.7E-15 9.3E-20 113.2 8.5 82 19-121 5-86 (142)
33 4eqf_A PEX5-related protein; a 99.6 2.3E-14 8E-19 121.4 15.2 92 7-119 74-165 (365)
34 3q49_B STIP1 homology and U bo 99.6 1.5E-14 5.1E-19 106.2 12.1 91 8-119 19-109 (137)
35 2pzi_A Probable serine/threoni 99.6 1.3E-14 4.4E-19 137.0 14.0 119 10-149 403-549 (681)
36 2lni_A Stress-induced-phosphop 99.6 2.9E-14 9.9E-19 102.9 12.5 93 8-121 26-118 (133)
37 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.4E-18 109.2 17.3 116 10-146 69-205 (243)
38 2xev_A YBGF; tetratricopeptide 99.6 6.1E-14 2.1E-18 101.8 14.0 100 8-128 12-117 (129)
39 3as5_A MAMA; tetratricopeptide 99.6 5.6E-14 1.9E-18 105.8 14.3 120 8-148 18-158 (186)
40 1a17_A Serine/threonine protei 99.6 3.3E-14 1.1E-18 106.5 12.9 94 8-122 23-116 (166)
41 4eqf_A PEX5-related protein; a 99.6 4.3E-14 1.5E-18 119.8 14.6 93 8-121 187-281 (365)
42 2dba_A Smooth muscle cell asso 99.6 7.2E-14 2.5E-18 102.8 13.4 99 8-127 38-139 (148)
43 2vyi_A SGTA protein; chaperone 99.6 1.5E-13 5E-18 98.1 14.6 93 8-121 22-114 (131)
44 3urz_A Uncharacterized protein 99.6 2.9E-14 9.8E-19 114.4 11.9 104 8-121 64-191 (208)
45 2vq2_A PILW, putative fimbrial 99.6 1.9E-13 6.6E-18 106.4 16.2 121 8-149 18-162 (225)
46 1fch_A Peroxisomal targeting s 99.6 1E-13 3.4E-18 116.6 15.5 119 9-148 192-344 (368)
47 2pzi_A Probable serine/threoni 99.5 5.9E-15 2E-19 139.3 8.3 117 8-146 443-580 (681)
48 3hym_B Cell division cycle pro 99.5 9.4E-14 3.2E-18 114.3 14.6 119 9-148 67-207 (330)
49 2q7f_A YRRB protein; TPR, prot 99.5 7.6E-14 2.6E-18 110.5 13.4 120 9-149 34-174 (243)
50 3upv_A Heat shock protein STI1 99.5 6E-14 2.1E-18 102.6 11.8 95 29-144 1-122 (126)
51 4abn_A Tetratricopeptide repea 99.5 4E-14 1.4E-18 127.8 12.8 128 9-149 113-273 (474)
52 2vsy_A XCC0866; transferase, g 99.5 6E-14 2.1E-18 127.9 14.1 115 12-147 3-138 (568)
53 3uq3_A Heat shock protein STI1 99.5 7.3E-14 2.5E-18 111.0 12.8 121 8-149 48-222 (258)
54 3uq3_A Heat shock protein STI1 99.5 6.6E-14 2.3E-18 111.3 12.5 114 8-142 115-255 (258)
55 2kck_A TPR repeat; tetratricop 99.5 7.6E-14 2.6E-18 97.5 11.3 92 8-120 16-110 (112)
56 1na0_A Designed protein CTPR3; 99.5 3.3E-13 1.1E-17 95.5 14.6 94 8-122 19-112 (125)
57 1fch_A Peroxisomal targeting s 99.5 3E-13 1E-17 113.7 16.7 91 8-119 74-164 (368)
58 3ieg_A DNAJ homolog subfamily 99.5 2E-13 6.8E-18 113.0 15.4 90 8-118 13-102 (359)
59 4abn_A Tetratricopeptide repea 99.5 4.4E-14 1.5E-18 127.6 12.3 127 8-147 147-305 (474)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.9E-13 1E-17 109.0 15.8 109 9-138 54-182 (275)
61 2e2e_A Formate-dependent nitri 99.5 5.3E-14 1.8E-18 108.5 10.9 92 9-121 21-115 (177)
62 2ho1_A Type 4 fimbrial biogene 99.5 2E-13 7E-18 109.4 14.2 119 9-148 48-189 (252)
63 1p5q_A FKBP52, FK506-binding p 99.5 6.3E-15 2.2E-19 127.6 5.5 118 10-148 125-278 (336)
64 2fbn_A 70 kDa peptidylprolyl i 99.5 2.3E-13 7.8E-18 107.3 14.0 97 8-125 48-160 (198)
65 2kat_A Uncharacterized protein 99.5 2.7E-14 9.2E-19 103.4 7.5 85 15-120 2-86 (115)
66 3cv0_A Peroxisome targeting si 99.5 3.8E-13 1.3E-17 110.5 15.2 120 8-148 148-300 (327)
67 3hym_B Cell division cycle pro 99.5 1.8E-13 6.2E-18 112.5 13.3 119 8-147 169-317 (330)
68 1p5q_A FKBP52, FK506-binding p 99.5 2.4E-13 8E-18 117.7 14.5 97 8-125 157-268 (336)
69 3sz7_A HSC70 cochaperone (SGT) 99.5 1.4E-13 4.9E-18 105.4 11.7 96 27-143 6-122 (164)
70 2y4t_A DNAJ homolog subfamily 99.5 5.2E-13 1.8E-17 115.5 16.4 92 8-120 36-127 (450)
71 2ond_A Cleavage stimulation fa 99.5 2E-13 6.8E-18 115.3 13.5 115 14-149 80-218 (308)
72 3u4t_A TPR repeat-containing p 99.5 1.3E-13 4.5E-18 111.4 11.8 129 9-148 14-190 (272)
73 3qky_A Outer membrane assembly 99.5 3E-13 1E-17 110.6 14.1 93 8-121 25-131 (261)
74 2ho1_A Type 4 fimbrial biogene 99.5 8.3E-13 2.8E-17 105.8 15.7 120 8-148 81-223 (252)
75 3u4t_A TPR repeat-containing p 99.5 1E-13 3.5E-18 112.1 10.2 96 31-148 2-122 (272)
76 4g1t_A Interferon-induced prot 99.5 7.3E-13 2.5E-17 115.7 16.2 120 8-146 61-221 (472)
77 2fo7_A Synthetic consensus TPR 99.5 1.6E-12 5.6E-17 92.4 15.3 93 8-121 11-103 (136)
78 2c2l_A CHIP, carboxy terminus 99.5 3.2E-13 1.1E-17 113.7 13.3 118 7-145 13-148 (281)
79 3ieg_A DNAJ homolog subfamily 99.5 8.3E-13 2.9E-17 109.2 15.2 120 8-148 47-202 (359)
80 4gcn_A Protein STI-1; structur 99.5 2.5E-13 8.4E-18 101.6 10.8 71 30-121 6-76 (127)
81 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.4E-17 101.7 15.3 118 8-146 52-194 (225)
82 2vsy_A XCC0866; transferase, g 99.5 4.4E-13 1.5E-17 122.2 14.7 110 8-138 33-166 (568)
83 1elr_A TPR2A-domain of HOP; HO 99.5 6.6E-13 2.3E-17 94.9 12.5 91 8-119 14-111 (131)
84 3as5_A MAMA; tetratricopeptide 99.5 1E-12 3.6E-17 98.8 14.1 93 8-121 52-144 (186)
85 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.6E-13 1.6E-17 107.9 12.5 110 11-141 18-152 (275)
86 3cv0_A Peroxisome targeting si 99.5 2.1E-12 7.3E-17 106.0 16.5 120 8-148 31-186 (327)
87 2if4_A ATFKBP42; FKBP-like, al 99.5 7.4E-14 2.5E-18 121.1 8.0 97 10-127 191-304 (338)
88 1hh8_A P67PHOX, NCF-2, neutrop 99.5 7.6E-13 2.6E-17 103.9 13.1 93 8-121 47-155 (213)
89 3fp2_A TPR repeat-containing p 99.5 7.6E-13 2.6E-17 116.7 13.5 149 9-180 254-425 (537)
90 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.2E-12 4.3E-17 105.6 13.7 105 7-121 13-130 (225)
91 4g1t_A Interferon-induced prot 99.4 5.9E-13 2E-17 116.3 12.4 120 12-145 152-292 (472)
92 1na0_A Designed protein CTPR3; 99.4 3.3E-12 1.1E-16 90.2 13.9 99 27-146 3-123 (125)
93 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.3E-13 7.7E-18 106.9 8.4 89 8-120 16-104 (213)
94 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 7.3E-13 2.5E-17 119.4 12.6 93 8-121 278-385 (457)
95 2vyi_A SGTA protein; chaperone 99.4 1.3E-12 4.4E-17 93.1 11.4 101 26-147 6-127 (131)
96 3q49_B STIP1 homology and U bo 99.4 1.6E-12 5.4E-17 95.2 12.1 75 26-121 3-77 (137)
97 2xpi_A Anaphase-promoting comp 99.4 2.3E-12 7.7E-17 115.6 15.5 117 8-145 451-595 (597)
98 3ma5_A Tetratricopeptide repea 99.4 2.1E-13 7.2E-18 97.7 7.1 73 27-120 2-74 (100)
99 2e2e_A Formate-dependent nitri 99.4 2.4E-12 8.2E-17 99.1 12.9 96 8-122 54-150 (177)
100 3qou_A Protein YBBN; thioredox 99.4 8.3E-13 2.8E-17 111.3 11.0 98 29-147 114-232 (287)
101 2y4t_A DNAJ homolog subfamily 99.4 2.8E-12 9.6E-17 110.8 14.5 130 8-148 153-343 (450)
102 2r5s_A Uncharacterized protein 99.4 4.1E-13 1.4E-17 104.3 8.1 119 8-148 16-158 (176)
103 1hxi_A PEX5, peroxisome target 99.4 1.3E-12 4.5E-17 96.9 10.5 68 33-121 18-85 (121)
104 3fp2_A TPR repeat-containing p 99.4 2.4E-12 8.3E-17 113.4 13.9 120 9-149 321-477 (537)
105 1ihg_A Cyclophilin 40; ppiase 99.4 1.2E-12 4.2E-17 115.4 12.0 99 8-127 233-347 (370)
106 2fbn_A 70 kDa peptidylprolyl i 99.4 2.7E-13 9.2E-18 106.9 6.8 118 10-148 16-170 (198)
107 3mkr_A Coatomer subunit epsilo 99.4 4.1E-12 1.4E-16 107.8 14.4 52 59-121 183-234 (291)
108 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 7.4E-14 2.5E-18 125.9 3.7 116 10-146 246-397 (457)
109 2fo7_A Synthetic consensus TPR 99.4 5.4E-12 1.8E-16 89.6 12.7 92 8-120 45-136 (136)
110 2xpi_A Anaphase-promoting comp 99.4 6.6E-12 2.2E-16 112.6 16.3 117 11-148 420-564 (597)
111 3mkr_A Coatomer subunit epsilo 99.4 2.3E-12 7.9E-17 109.3 12.5 95 12-127 180-275 (291)
112 2dba_A Smooth muscle cell asso 99.4 5E-12 1.7E-16 92.8 12.7 99 26-145 22-144 (148)
113 1elw_A TPR1-domain of HOP; HOP 99.4 6.8E-12 2.3E-16 88.0 12.6 92 31-143 3-115 (118)
114 1wao_1 Serine/threonine protei 99.4 2.1E-12 7.2E-17 117.3 12.5 92 9-121 17-108 (477)
115 2gw1_A Mitochondrial precursor 99.4 1.7E-12 5.9E-17 113.3 10.4 120 8-149 247-387 (514)
116 3qou_A Protein YBBN; thioredox 99.4 3E-12 1E-16 107.8 11.5 120 8-148 127-269 (287)
117 2ond_A Cleavage stimulation fa 99.4 4.9E-12 1.7E-16 106.7 12.5 118 13-144 31-178 (308)
118 1na3_A Designed protein CTPR2; 99.4 7.1E-12 2.4E-16 85.4 10.9 83 29-145 6-88 (91)
119 3qky_A Outer membrane assembly 99.4 1.6E-11 5.3E-16 100.3 14.2 92 8-120 62-181 (261)
120 2r5s_A Uncharacterized protein 99.3 7.9E-13 2.7E-17 102.7 5.7 100 28-149 2-123 (176)
121 2hr2_A Hypothetical protein; a 99.3 6.7E-12 2.3E-16 100.2 10.6 90 31-147 10-115 (159)
122 3rkv_A Putative peptidylprolyl 99.3 8.5E-12 2.9E-16 95.2 10.0 94 31-145 10-143 (162)
123 2gw1_A Mitochondrial precursor 99.3 8.5E-12 2.9E-16 108.9 11.3 118 10-148 316-463 (514)
124 2kck_A TPR repeat; tetratricop 99.3 1.1E-11 3.7E-16 86.4 9.1 89 27-147 1-89 (112)
125 1qqe_A Vesicular transport pro 99.3 6.6E-12 2.2E-16 105.5 9.4 120 8-148 47-213 (292)
126 2l6j_A TPR repeat-containing p 99.3 1.1E-11 3.6E-16 87.4 8.6 90 31-148 3-92 (111)
127 1a17_A Serine/threonine protei 99.3 9.2E-11 3.2E-15 87.5 13.9 92 31-143 12-124 (166)
128 1qqe_A Vesicular transport pro 99.3 4E-12 1.4E-16 106.8 6.1 94 8-122 127-234 (292)
129 2l6j_A TPR repeat-containing p 99.3 2E-12 6.7E-17 91.2 3.3 84 8-112 14-103 (111)
130 3bee_A Putative YFRE protein; 99.3 3.9E-11 1.3E-15 86.8 9.9 75 28-120 2-76 (93)
131 2kc7_A BFR218_protein; tetratr 99.3 9.3E-12 3.2E-16 87.1 6.3 84 8-120 10-94 (99)
132 1elr_A TPR2A-domain of HOP; HO 99.2 5.5E-11 1.9E-15 84.7 10.2 71 29-120 1-71 (131)
133 2xev_A YBGF; tetratricopeptide 99.2 9.7E-11 3.3E-15 84.7 11.2 67 33-120 3-72 (129)
134 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.3E-11 2.2E-15 95.5 10.2 104 8-122 51-182 (225)
135 2lni_A Stress-induced-phosphop 99.2 2E-10 6.9E-15 82.4 11.7 98 27-145 11-129 (133)
136 3edt_B KLC 2, kinesin light ch 99.2 2.8E-11 9.6E-16 96.7 7.7 116 12-148 22-183 (283)
137 1na3_A Designed protein CTPR2; 99.2 1.4E-10 4.6E-15 78.9 10.1 73 8-90 19-91 (91)
138 3edt_B KLC 2, kinesin light ch 99.2 4.3E-11 1.5E-15 95.6 8.4 88 8-116 53-156 (283)
139 2kc7_A BFR218_protein; tetratr 99.2 2.7E-10 9.1E-15 79.6 10.7 67 35-122 3-70 (99)
140 2ooe_A Cleavage stimulation fa 99.2 1.6E-10 5.4E-15 104.2 12.0 113 15-148 303-439 (530)
141 1zu2_A Mitochondrial import re 99.2 7E-11 2.4E-15 94.2 8.3 67 54-121 14-80 (158)
142 2c2l_A CHIP, carboxy terminus 99.2 6.6E-11 2.3E-15 99.5 8.1 72 29-121 1-72 (281)
143 3nf1_A KLC 1, kinesin light ch 99.1 1.9E-10 6.6E-15 93.5 9.8 120 8-148 37-209 (311)
144 1pc2_A Mitochondria fission pr 99.1 2E-10 6.7E-15 91.1 9.1 96 13-126 13-110 (152)
145 1ouv_A Conserved hypothetical 99.1 1.9E-09 6.5E-14 88.0 15.1 83 9-116 17-107 (273)
146 3nf1_A KLC 1, kinesin light ch 99.1 4E-11 1.4E-15 97.6 4.9 91 8-119 121-227 (311)
147 1ouv_A Conserved hypothetical 99.1 2.5E-09 8.5E-14 87.3 15.0 109 11-146 55-194 (273)
148 2ooe_A Cleavage stimulation fa 99.1 6.6E-10 2.2E-14 100.2 12.2 115 15-143 255-399 (530)
149 3ulq_A Response regulator aspa 99.1 1.5E-10 5.1E-15 99.5 7.5 120 9-149 114-279 (383)
150 1ihg_A Cyclophilin 40; ppiase 99.1 5.2E-10 1.8E-14 98.5 10.5 96 32-148 223-355 (370)
151 1dce_A Protein (RAB geranylger 99.1 1.7E-09 5.9E-14 100.7 14.5 126 13-147 44-191 (567)
152 3k9i_A BH0479 protein; putativ 99.1 9.4E-11 3.2E-15 85.2 4.5 71 57-138 5-99 (117)
153 3dra_A Protein farnesyltransfe 99.1 1.5E-09 5.2E-14 94.2 12.7 117 13-147 48-193 (306)
154 4a1s_A PINS, partner of inscut 99.1 5.5E-10 1.9E-14 95.4 9.5 88 8-116 58-155 (411)
155 3dra_A Protein farnesyltransfe 99.1 4.8E-09 1.6E-13 91.1 15.5 121 9-147 78-233 (306)
156 3rjv_A Putative SEL1 repeat pr 99.0 1.5E-09 5.2E-14 87.2 11.1 116 9-147 29-175 (212)
157 2qfc_A PLCR protein; TPR, HTH, 99.0 4.9E-09 1.7E-13 87.4 14.2 118 10-148 87-250 (293)
158 1wao_1 Serine/threonine protei 99.0 1.3E-10 4.6E-15 105.4 4.7 93 8-121 50-155 (477)
159 1dce_A Protein (RAB geranylger 99.0 4.7E-09 1.6E-13 97.8 14.4 115 13-145 88-237 (567)
160 2if4_A ATFKBP42; FKBP-like, al 99.0 2E-10 6.9E-15 99.4 4.4 93 9-122 241-334 (338)
161 2ifu_A Gamma-SNAP; membrane fu 99.0 6E-10 2.1E-14 94.1 7.1 90 8-119 46-147 (307)
162 3ulq_A Response regulator aspa 99.0 8.8E-10 3E-14 94.6 8.2 88 8-116 153-253 (383)
163 3dss_A Geranylgeranyl transfer 99.0 8.9E-09 3E-13 90.6 14.7 125 14-147 46-192 (331)
164 3ro2_A PINS homolog, G-protein 99.0 1.5E-09 5.1E-14 88.1 8.9 93 7-120 14-116 (338)
165 3sf4_A G-protein-signaling mod 99.0 6.5E-10 2.2E-14 93.7 6.8 119 9-148 198-361 (406)
166 3sf4_A G-protein-signaling mod 99.0 6.2E-10 2.1E-14 93.9 6.0 114 14-148 163-321 (406)
167 3q15_A PSP28, response regulat 98.9 1.3E-09 4.4E-14 93.8 7.6 120 9-149 112-276 (378)
168 3u3w_A Transcriptional activat 98.9 1.1E-08 3.8E-13 85.2 12.9 86 10-116 87-184 (293)
169 4a1s_A PINS, partner of inscut 98.9 3.5E-10 1.2E-14 96.6 3.6 131 8-148 96-277 (411)
170 3ro3_A PINS homolog, G-protein 98.9 1.3E-09 4.5E-14 79.5 5.8 111 9-147 20-142 (164)
171 3dss_A Geranylgeranyl transfer 98.9 4.7E-08 1.6E-12 86.0 16.8 152 11-184 87-281 (331)
172 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-09 6.6E-14 91.0 7.4 88 12-121 129-228 (307)
173 2kat_A Uncharacterized protein 98.9 4.3E-09 1.5E-13 75.5 8.1 52 59-121 2-53 (115)
174 3q7a_A Farnesyltransferase alp 98.9 2E-08 6.8E-13 89.1 13.9 119 14-145 105-253 (349)
175 2qfc_A PLCR protein; TPR, HTH, 98.9 2.1E-08 7.3E-13 83.5 12.3 89 10-119 127-228 (293)
176 3gw4_A Uncharacterized protein 98.9 1.6E-08 5.6E-13 77.7 10.3 84 11-116 5-95 (203)
177 3u3w_A Transcriptional activat 98.9 4.3E-09 1.5E-13 87.7 7.5 89 8-117 165-267 (293)
178 3q15_A PSP28, response regulat 98.9 7.7E-09 2.6E-13 88.9 9.2 91 8-119 192-293 (378)
179 3q7a_A Farnesyltransferase alp 98.9 2.4E-08 8.3E-13 88.5 12.5 119 10-148 66-215 (349)
180 4f3v_A ESX-1 secretion system 98.8 9.4E-09 3.2E-13 88.7 9.4 72 34-127 173-247 (282)
181 3ro2_A PINS homolog, G-protein 98.8 2E-09 6.9E-14 87.3 4.7 129 9-148 94-277 (338)
182 3gw4_A Uncharacterized protein 98.8 9.6E-09 3.3E-13 79.0 7.5 110 9-148 37-161 (203)
183 3u64_A Protein TP_0956; tetrat 98.8 2.1E-08 7.3E-13 87.2 10.2 88 27-120 147-237 (301)
184 3ro3_A PINS homolog, G-protein 98.8 1.8E-08 6.2E-13 73.3 8.0 91 8-119 59-161 (164)
185 4f3v_A ESX-1 secretion system 98.8 1.2E-08 4.1E-13 88.1 7.5 111 9-142 113-249 (282)
186 2v5f_A Prolyl 4-hydroxylase su 98.8 1.1E-07 3.6E-12 68.8 11.1 76 30-126 3-85 (104)
187 3u64_A Protein TP_0956; tetrat 98.7 2.5E-08 8.7E-13 86.8 7.9 94 6-120 171-273 (301)
188 3ly7_A Transcriptional activat 98.7 1.5E-07 5E-12 84.2 13.0 98 13-122 214-345 (372)
189 3e4b_A ALGK; tetratricopeptide 98.7 1E-07 3.4E-12 85.3 11.3 113 13-146 194-330 (452)
190 1hz4_A MALT regulatory protein 98.7 1E-07 3.6E-12 80.8 10.4 118 10-148 26-188 (373)
191 3rjv_A Putative SEL1 repeat pr 98.7 6.8E-08 2.3E-12 77.4 8.6 89 13-116 68-158 (212)
192 3n71_A Histone lysine methyltr 98.6 1.7E-07 5.9E-12 86.1 11.5 99 8-127 319-438 (490)
193 1klx_A Cysteine rich protein B 98.6 4.4E-07 1.5E-11 68.6 11.6 84 14-118 41-128 (138)
194 3qwp_A SET and MYND domain-con 98.6 1.7E-07 5.8E-12 84.6 10.6 101 6-127 295-416 (429)
195 3ma5_A Tetratricopeptide repea 98.6 1.6E-07 5.4E-12 66.7 7.4 73 8-90 17-91 (100)
196 3qww_A SET and MYND domain-con 98.6 1.1E-07 3.9E-12 86.1 8.0 95 11-126 311-426 (433)
197 1klx_A Cysteine rich protein B 98.5 8E-07 2.7E-11 67.1 10.8 96 12-146 9-105 (138)
198 1nzn_A CGI-135 protein, fissio 98.5 4.4E-07 1.5E-11 69.7 9.0 94 10-121 13-108 (126)
199 2xm6_A Protein corresponding t 98.5 1.9E-06 6.6E-11 76.6 14.5 109 11-146 56-195 (490)
200 2xm6_A Protein corresponding t 98.5 1.9E-06 6.6E-11 76.6 14.1 117 12-146 237-375 (490)
201 3e4b_A ALGK; tetratricopeptide 98.5 2.5E-06 8.4E-11 76.2 13.7 109 15-145 162-294 (452)
202 1hz4_A MALT regulatory protein 98.4 4E-07 1.4E-11 77.2 7.8 90 9-119 64-167 (373)
203 2v5f_A Prolyl 4-hydroxylase su 98.3 4.9E-06 1.7E-10 59.9 9.6 65 9-83 16-87 (104)
204 1xi4_A Clathrin heavy chain; a 98.2 2.2E-05 7.4E-10 80.4 14.5 80 10-120 1088-1167(1630)
205 1y8m_A FIS1; mitochondria, unk 98.1 5.3E-05 1.8E-09 59.3 12.8 77 28-122 35-112 (144)
206 3bee_A Putative YFRE protein; 98.0 1.2E-05 4.1E-10 57.6 6.9 54 14-77 25-78 (93)
207 3mv2_B Coatomer subunit epsilo 98.0 3.9E-05 1.3E-09 66.9 11.1 93 8-119 110-210 (310)
208 3o48_A Mitochondria fission 1 98.0 4.7E-05 1.6E-09 58.9 10.1 75 29-121 37-112 (134)
209 3ly7_A Transcriptional activat 98.0 5.4E-05 1.8E-09 67.6 11.3 106 23-135 185-345 (372)
210 4b4t_Q 26S proteasome regulato 97.9 2.2E-05 7.6E-10 67.3 8.0 88 10-118 16-126 (434)
211 3mv2_B Coatomer subunit epsilo 97.9 5.6E-05 1.9E-09 65.9 10.1 85 9-117 147-241 (310)
212 1xi4_A Clathrin heavy chain; a 97.8 9.3E-05 3.2E-09 75.9 10.7 85 8-121 1205-1314(1630)
213 1b89_A Protein (clathrin heavy 97.8 6.8E-05 2.3E-09 68.5 8.7 139 10-178 160-339 (449)
214 1pc2_A Mitochondria fission pr 97.8 6.4E-05 2.2E-09 59.3 7.1 63 13-85 50-114 (152)
215 4b4t_Q 26S proteasome regulato 97.7 6.4E-05 2.2E-09 64.4 7.5 85 13-118 110-206 (434)
216 3n71_A Histone lysine methyltr 97.6 0.00011 3.8E-09 67.4 6.8 87 8-115 361-463 (490)
217 4e6h_A MRNA 3'-END-processing 97.5 0.00061 2.1E-08 64.9 11.4 112 10-142 446-583 (679)
218 1b89_A Protein (clathrin heavy 97.5 9.7E-05 3.3E-09 67.5 5.3 70 59-145 165-252 (449)
219 4e6h_A MRNA 3'-END-processing 97.5 0.0012 4E-08 63.0 12.5 82 14-116 325-407 (679)
220 3qww_A SET and MYND domain-con 97.1 0.00049 1.7E-08 62.1 5.9 77 55-148 311-396 (433)
221 2uy1_A Cleavage stimulation fa 96.8 0.03 1E-06 50.7 14.2 120 14-146 195-366 (493)
222 3qwp_A SET and MYND domain-con 96.7 0.0028 9.6E-08 56.9 7.0 50 56-116 301-358 (429)
223 3ffl_A Anaphase-promoting comp 96.6 0.01 3.4E-07 47.4 8.7 82 10-112 32-147 (167)
224 1nzn_A CGI-135 protein, fissio 96.2 0.011 3.7E-07 45.0 6.3 60 15-84 55-116 (126)
225 3o48_A Mitochondria fission 1 95.9 0.03 1E-06 43.1 7.6 62 14-85 59-121 (134)
226 2uy1_A Cleavage stimulation fa 95.8 0.071 2.4E-06 48.2 11.2 82 10-113 298-380 (493)
227 1ya0_A SMG-7 transcript varian 95.7 0.044 1.5E-06 50.4 9.3 54 57-121 167-220 (497)
228 3ffl_A Anaphase-promoting comp 95.6 0.016 5.5E-07 46.2 5.3 63 34-117 22-93 (167)
229 1y8m_A FIS1; mitochondria, unk 95.6 0.051 1.7E-06 42.3 7.9 59 15-83 59-118 (144)
230 1zbp_A Hypothetical protein VP 95.4 0.062 2.1E-06 46.0 8.5 61 56-127 11-75 (273)
231 2ff4_A Probable regulatory pro 95.2 0.23 7.9E-06 43.6 11.9 89 36-145 175-278 (388)
232 4h7y_A Dual specificity protei 94.1 0.75 2.6E-05 36.2 11.0 86 13-120 34-127 (161)
233 1zbp_A Hypothetical protein VP 94.0 0.64 2.2E-05 39.6 11.5 101 10-120 9-133 (273)
234 4gns_B Protein CSD3, chitin bi 92.6 1 3.6E-05 43.4 11.6 48 55-113 350-397 (754)
235 3mkq_A Coatomer beta'-subunit; 92.5 0.65 2.2E-05 42.6 9.8 107 27-146 676-795 (814)
236 3kae_A CDC27, possible protein 91.4 1.5 5E-05 35.8 9.4 77 30-127 60-154 (242)
237 1ya0_A SMG-7 transcript varian 90.5 0.7 2.4E-05 42.3 7.7 66 13-88 167-232 (497)
238 4g26_A Pentatricopeptide repea 90.4 5.2 0.00018 36.1 13.4 89 13-123 85-178 (501)
239 3lpz_A GET4 (YOR164C homolog); 90.4 7.6 0.00026 33.9 13.9 124 3-147 107-295 (336)
240 4g26_A Pentatricopeptide repea 90.4 3.7 0.00013 37.0 12.4 98 8-127 115-217 (501)
241 3mkq_B Coatomer subunit alpha; 90.3 2.6 8.9E-05 33.5 10.0 43 11-68 18-60 (177)
242 4h7y_A Dual specificity protei 87.6 1.4 4.7E-05 34.7 6.4 63 7-79 69-131 (161)
243 2wpv_A GET4, UPF0363 protein Y 86.5 1.9 6.6E-05 37.2 7.4 91 3-114 105-215 (312)
244 4gns_B Protein CSD3, chitin bi 85.2 1.3 4.5E-05 42.7 6.2 48 11-68 350-397 (754)
245 3mkq_A Coatomer beta'-subunit; 83.7 3.6 0.00012 37.6 8.3 39 59-113 669-707 (814)
246 3mkq_B Coatomer subunit alpha; 81.7 3.8 0.00013 32.5 6.7 42 59-116 22-63 (177)
247 2ff4_A Probable regulatory pro 79.6 4.7 0.00016 35.1 7.2 52 9-70 182-233 (388)
248 4b4t_R RPN7, 26S proteasome re 77.9 2.6 8.9E-05 37.3 5.0 86 10-116 109-197 (429)
249 3kae_A CDC27, possible protein 74.8 30 0.001 28.1 9.9 96 28-149 29-128 (242)
250 1wfd_A Hypothetical protein 15 74.4 6.8 0.00023 27.6 5.5 50 53-121 7-56 (93)
251 4b4t_S RPN3, 26S proteasome re 74.1 8.1 0.00028 35.7 7.3 67 32-121 231-304 (523)
252 4fhn_B Nucleoporin NUP120; pro 73.2 20 0.00068 35.6 10.4 75 24-119 834-931 (1139)
253 3iqu_A 14-3-3 protein sigma; s 71.2 27 0.00093 28.8 9.3 71 35-116 126-205 (236)
254 2w2u_A Hypothetical P60 katani 71.1 6.3 0.00022 27.2 4.6 17 55-71 13-29 (83)
255 2v6y_A AAA family ATPase, P60 70.8 7.9 0.00027 26.6 5.1 15 57-71 7-21 (83)
256 4gq4_A Menin; tumor suppressor 69.2 13 0.00044 33.8 7.2 81 31-130 261-353 (489)
257 1qsa_A Protein (soluble lytic 65.2 23 0.00078 33.1 8.5 78 16-115 270-347 (618)
258 1wy6_A Hypothetical protein ST 65.1 44 0.0015 26.1 8.6 43 64-117 113-155 (172)
259 1om2_A Protein (mitochondrial 64.3 11 0.00037 27.0 4.7 32 80-122 24-55 (95)
260 3re2_A Predicted protein; meni 62.8 27 0.00094 31.2 7.9 69 61-143 276-356 (472)
261 3ax2_A Mitochondrial import re 62.3 15 0.00052 24.9 5.0 31 80-121 21-51 (73)
262 2br9_A 14-3-3E, 14-3-3 protein 62.0 26 0.0009 28.8 7.4 70 36-116 124-202 (234)
263 2v6x_A Vacuolar protein sortin 62.0 16 0.00054 24.9 5.2 16 56-71 8-23 (85)
264 3uzd_A 14-3-3 protein gamma; s 61.4 45 0.0015 27.7 8.8 72 35-116 124-203 (248)
265 2npm_A 14-3-3 domain containin 61.2 25 0.00085 29.5 7.2 74 36-116 150-227 (260)
266 2crb_A Nuclear receptor bindin 60.9 11 0.00038 27.0 4.2 28 32-69 15-42 (97)
267 2ijq_A Hypothetical protein; s 60.8 41 0.0014 26.1 7.9 62 35-115 35-103 (161)
268 1o9d_A 14-3-3-like protein C; 60.7 30 0.001 29.0 7.6 70 36-116 129-207 (260)
269 3ubw_A 14-3-3E, 14-3-3 protein 59.6 28 0.00097 29.2 7.2 74 36-116 150-228 (261)
270 2cpt_A SKD1 protein, vacuolar 58.7 14 0.00048 27.1 4.7 15 57-71 14-28 (117)
271 4b4t_R RPN7, 26S proteasome re 58.4 28 0.00095 30.5 7.4 90 8-118 141-239 (429)
272 2crb_A Nuclear receptor bindin 58.3 11 0.00037 27.1 3.8 41 82-140 21-61 (97)
273 3qtm_A Uncharacterized protein 56.5 20 0.00067 30.8 5.7 79 12-90 99-199 (346)
274 3spa_A Mtrpol, DNA-directed RN 54.7 1.3E+02 0.0046 30.3 12.1 96 7-124 136-240 (1134)
275 3t5x_A PCI domain-containing p 54.0 20 0.0007 28.4 5.3 34 77-121 15-48 (203)
276 3txn_A 26S proteasome regulato 53.8 88 0.003 27.4 9.9 83 12-115 113-209 (394)
277 4a5x_A MITD1, MIT domain-conta 53.6 25 0.00085 24.3 5.0 13 59-71 14-26 (86)
278 3msv_A Nuclear import adaptor, 53.5 26 0.00089 30.5 6.0 79 12-90 146-246 (393)
279 4gq2_M Nucleoporin NUP120; bet 53.1 49 0.0017 32.2 8.8 37 23-69 831-867 (950)
280 3qtm_A Uncharacterized protein 51.1 23 0.00078 30.4 5.2 91 30-120 65-176 (346)
281 4fhn_B Nucleoporin NUP120; pro 50.8 29 0.001 34.4 6.9 37 67-114 833-869 (1139)
282 3efz_A 14-3-3 protein; 14-3-3, 50.3 25 0.00086 29.7 5.4 71 36-116 146-226 (268)
283 2cfu_A SDSA1; SDS-hydrolase, l 47.9 30 0.001 32.3 6.2 35 56-90 463-497 (658)
284 4gq2_M Nucleoporin NUP120; bet 47.4 18 0.00061 35.4 4.6 38 66-114 830-867 (950)
285 3txn_A 26S proteasome regulato 46.5 45 0.0015 29.4 6.7 61 36-117 103-169 (394)
286 1om2_A Protein (mitochondrial 46.4 37 0.0013 24.2 5.0 33 36-78 24-56 (95)
287 3t5v_B Nuclear mRNA export pro 44.0 95 0.0032 27.8 8.6 92 11-120 139-254 (455)
288 3ax2_A Mitochondrial import re 41.8 57 0.002 22.0 5.2 36 36-81 21-56 (73)
289 3msv_A Nuclear import adaptor, 41.2 35 0.0012 29.7 4.9 91 30-120 112-223 (393)
290 4b4t_P 26S proteasome regulato 41.0 1.8E+02 0.0063 25.4 11.7 86 10-116 149-247 (445)
291 2rpa_A Katanin P60 ATPase-cont 36.5 30 0.001 23.7 3.2 25 81-116 17-41 (78)
292 2o8p_A 14-3-3 domain containin 35.5 1.8E+02 0.0062 23.7 8.3 65 36-116 124-197 (227)
293 2dl1_A Spartin; SPG20, MIT, st 35.1 30 0.001 25.6 3.1 54 58-130 19-77 (116)
294 3spa_A Mtrpol, DNA-directed RN 34.3 2.2E+02 0.0075 28.8 10.0 73 34-128 129-208 (1134)
295 3u84_A Menin; MLL, JUND, ledgf 34.1 1.3E+02 0.0044 27.5 7.6 69 61-143 298-378 (550)
296 4gof_A Small glutamine-rich te 33.0 20 0.00068 22.8 1.6 24 53-76 25-48 (52)
297 1s6c_B Potassium voltage-gated 32.7 7.4 0.00025 22.1 -0.4 26 172-197 4-30 (30)
298 2cwy_A Hypothetical protein TT 30.2 84 0.0029 21.8 4.8 57 36-115 5-67 (94)
299 3s6n_M SurviVal motor neuron p 29.9 35 0.0012 20.0 2.2 16 102-117 17-32 (37)
300 4a1g_A Mitotic checkpoint seri 29.4 64 0.0022 24.7 4.3 49 59-118 82-132 (152)
301 3myv_A SUSD superfamily protei 29.2 1.3E+02 0.0043 26.4 6.9 48 58-116 164-219 (454)
302 1wy6_A Hypothetical protein ST 28.6 1.1E+02 0.0039 23.8 5.5 37 25-71 118-154 (172)
303 4abx_A DNA repair protein RECN 28.1 66 0.0023 24.6 4.3 53 56-119 70-122 (175)
304 3lew_A SUSD-like carbohydrate 27.3 1.7E+02 0.0059 25.9 7.5 49 58-117 174-233 (495)
305 2lxb_A Small glutamine-rich te 26.3 34 0.0012 23.3 2.0 26 52-77 29-54 (74)
306 3t5x_A PCI domain-containing p 26.3 1.4E+02 0.0047 23.4 6.0 37 32-78 14-50 (203)
307 2g0u_A Type III secretion syst 25.1 1.3E+02 0.0045 21.2 5.0 35 12-46 30-64 (92)
308 2cpt_A SKD1 protein, vacuolar 24.9 69 0.0024 23.3 3.6 14 102-115 33-46 (117)
309 3kez_A Putative sugar binding 24.3 1.9E+02 0.0065 25.3 7.1 48 58-116 170-225 (461)
310 2vxg_A LD41624, GE-1, CG6181-P 23.9 1.8E+02 0.0062 21.7 5.9 54 3-78 68-121 (139)
311 2wvi_A Mitotic checkpoint seri 23.4 1.1E+02 0.0037 23.7 4.7 48 59-117 77-126 (164)
312 3esl_A Checkpoint serine/threo 23.2 1.4E+02 0.0049 23.8 5.5 48 59-117 96-145 (202)
313 3mcx_A SUSD superfamily protei 23.1 1.6E+02 0.0055 25.8 6.4 50 58-118 176-233 (477)
314 2rkl_A Vacuolar protein sortin 23.0 1.5E+02 0.0051 18.7 5.5 27 35-71 23-49 (53)
315 2ls4_A High affinity copper up 28.0 18 0.00063 19.7 0.0 14 175-188 3-16 (26)
316 2ca5_A MXIH; transport protein 20.2 2.2E+02 0.0077 19.7 5.7 33 14-46 26-58 (85)
No 1
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=100.00 E-value=4.3e-36 Score=240.83 Aligned_cols=144 Identities=58% Similarity=0.921 Sum_probs=141.4
Q ss_pred CCCChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80 (200)
Q Consensus 1 ~~~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~ 80 (200)
||| +.|++|+.+||+|++.++++++++|+++++|++||.+|..+++++.+.++++++++||.+|++||++||+++++||
T Consensus 6 ~~~-~~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 6 MDT-ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp CSC-CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccc-ccHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence 899 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
+||++|+++|+|+|+.+++.++|++|++||++|++++|++..|++++++.+++|++|++++++++
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999854
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=3.9e-18 Score=128.21 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=94.2
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+-+.+.|++|++.++++++++|+++.+++++|.++..+|++ ++|+..|++|+++||+++.+|+++|.+|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF----------QRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345678999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
..+| ++++|+.+|+++++++|++...+..|.
T Consensus 92 ~~~~-----------~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMR-----------EWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 9999 999999999999999999987666554
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=1.7e-18 Score=133.24 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=105.0
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
.+.+++|++.+++++..+|+++..++.+|.+|..++++ ++|++.|+++++++|+++++|+++|.+|...|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY----------DLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 35678899999999999999999999999999999998 99999999999999999999999999999988
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------H-HHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------L-YQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~-y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
++++|+.+|++|++++|++. . ++++++++|+.|+++.-.++.+..++
T Consensus 80 -----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 -----------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred -----------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999986 3 47888899999988877777665443
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=6.3e-18 Score=162.11 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=115.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.+++|++.++++++++|+++++++++|.+|..+|++ ++|+..|++|++++|+++++|++||++|.
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~----------~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
.+| ++++|+++|++|++++|++. .|+++++++|+.+++|.+|+..+..
T Consensus 89 ~~g-----------~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 89 EMQ-----------DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 999 99999999999999999997 8999999999999999999998876
Q ss_pred ccc
Q 028992 147 QQT 149 (200)
Q Consensus 147 ~~~ 149 (200)
++.
T Consensus 158 ~g~ 160 (723)
T 4gyw_A 158 VCD 160 (723)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.8e-17 Score=134.02 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=114.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|+..++++++.+|+++++++++|.++..+|++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV----------NPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..+..........|++++|+.+|+++++++|++. .|+++++++ +.++++.+++..+..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 9811111111111399999999999999999996 888999999 999999999999886
Q ss_pred ccc
Q 028992 147 QQT 149 (200)
Q Consensus 147 ~~~ 149 (200)
++-
T Consensus 164 ~g~ 166 (217)
T 2pl2_A 164 MGR 166 (217)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=6e-18 Score=150.71 Aligned_cols=121 Identities=11% Similarity=-0.002 Sum_probs=113.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+.+.+.+++|++.++++++++|++.++|+++|.++..+|+ + ++|+..|++|++++|+++.+|+++|.+|
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~----------~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL----------HEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999997 8 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
..+| ++++|+.+|++||+++|++. .|+++|+++|+.+.+|.+++..+.
T Consensus 177 ~~~g-----------~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 177 EWLR-----------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcc-----------CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9988 99999999999999999996 899999999999999999999998
Q ss_pred hccc
Q 028992 146 NQQT 149 (200)
Q Consensus 146 ~~~~ 149 (200)
.+++
T Consensus 246 ~l~~ 249 (382)
T 2h6f_A 246 NTTG 249 (382)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 7443
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=1.6e-17 Score=130.01 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+++.|++|++.+++++.++|+++.+|+++|.++..+|++ ++|+.+|++|++++|+++.+|+++|.+|.
T Consensus 46 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~----------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF----------QQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH----------HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
.+| ++++|+.+|++|++++|+.+.-++|-
T Consensus 116 ~lg-----------~~~eA~~~~~~al~l~~~~~~~~~A~ 144 (151)
T 3gyz_A 116 RLK-----------APLKAKECFELVIQHSNDEKLKIKAQ 144 (151)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999 99999999999999999987544443
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=3.6e-17 Score=132.32 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=111.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----------cCCcccccccccHHHHHHHHHHHHHhCCCCH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-----------SQFESVSDSKKIINEAISKFEEALVIDPAKH 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-----------~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~ 76 (200)
+.+++.+++|+..++++++++|+++++++++|.++..+ |++ ++|+..|+++++++|+++
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL----------EQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH----------HHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH----------HHHHHHHHHHHHhCcccH
Confidence 35778999999999999999999999999999999998 777 999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChH
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE 135 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e 135 (200)
.+++++|.+|...| ++++|+.+|++|++++ ++. .|+++++++|+.++
T Consensus 119 ~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 119 PLHLQRGLVYALLG-----------ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999 9999999999999999 775 89999999999999
Q ss_pred HHHHHHHHHHhccc
Q 028992 136 LHMELHKHGINQQT 149 (200)
Q Consensus 136 ~~~~l~~~~~~~~~ 149 (200)
++.+++..+..++-
T Consensus 187 ~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 187 LRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHccC
Confidence 99999998876553
No 9
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=1.6e-17 Score=124.85 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992 24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDF 103 (200)
Q Consensus 24 a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~ 103 (200)
.-.+||+.++.+.++|.+++..|++ ++|+..|++|++++|+++.+|+++|.+|..+| ++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~ 63 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDY----------PTAMRHYNEAVKRDPENAILYSNRAACLTKLM-----------EF 63 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-----------cH
Confidence 3468999999999999999999999 99999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 104 DKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 104 d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
++|+.+|++|++++|++. .|+++++++|+.++++.+|++.+
T Consensus 64 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999997 88999999999999999988753
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=3.2e-16 Score=121.25 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=113.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.|++|++.++++++++|++++++.++|.++..++++ ++|+..+++++..+|+++.++..+|.++.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP----------NDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..+ ++++|+.++++++.++|++. .|+++++++|..+++|.++|..+..
T Consensus 85 ~~~-----------~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 85 MID-----------EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcC-----------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 988 99999999999999999986 7889999999999999999999986
Q ss_pred ccc
Q 028992 147 QQT 149 (200)
Q Consensus 147 ~~~ 149 (200)
++-
T Consensus 154 ~g~ 156 (184)
T 3vtx_A 154 KGL 156 (184)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 11
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=1.8e-16 Score=141.20 Aligned_cols=120 Identities=8% Similarity=-0.013 Sum_probs=112.4
Q ss_pred HHHhch-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLL-SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~-fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+.+++. +++|++.++++++++|+++++|+++|.++..+|++ ++|+..|++||++||++..+|+++|.++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~----------~eAl~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP----------SQELEFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence 346776 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCChHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~~e~~~~ 139 (200)
..+| ++++|+.+|+++|+++|++. .|+++++++|+.+.+|.+
T Consensus 211 ~~~g-----------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~ 279 (382)
T 2h6f_A 211 QEFK-----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 279 (382)
T ss_dssp HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHcC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9988 99999999999999999986 288999999999999999
Q ss_pred HHHHHHhcc
Q 028992 140 LHKHGINQQ 148 (200)
Q Consensus 140 l~~~~~~~~ 148 (200)
++..+..++
T Consensus 280 l~~ll~~~g 288 (382)
T 2h6f_A 280 LKGILQDRG 288 (382)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHccC
Confidence 999887643
No 12
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=1.7e-16 Score=122.01 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=88.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+++.|++|++.++++++++|+++++|+++|.++..++++ ++|+..|+++++++|+++++++++|.+|.
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT----------DKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHH-HHHHHHhCCCCHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASEC-FQRAVDEEPTNELY 123 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~-fqkAl~l~P~~~~y 123 (200)
..| ++++|+.+ +++|++++|+++..
T Consensus 111 ~~~-----------~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 111 KND-----------VTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHC-----------SSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HcC-----------ChHHHHHHHHHHHHHhCcCCHHH
Confidence 988 99887776 59999999999843
No 13
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6e-16 Score=113.42 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=92.2
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+-+.+.|++|++.++++++++|+++.+++++|.++..++++ ++|+..|+++++++|+++.+++++|.+|
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345778999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEE------PTNELYQKSL 127 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~------P~~~~y~kAl 127 (200)
..+| ++++|+.+|+++++++ |++......+
T Consensus 83 ~~~~-----------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 83 IAVK-----------EYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHh-----------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 9999 9999999999999999 7666544444
No 14
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=4.3e-16 Score=124.68 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=110.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+-+.+.|++|++.++++++++| .+..+++++|.++..++++ ++|+..|+++++++|+++.+++++|.+|
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY----------KEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH----------HHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 4567899999999999999999 9999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHHhCCC--ChHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTK--APEL 136 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------------~y~kAle~~~k--~~e~ 136 (200)
..+| ++++|+.+|+++++++|++. .|+++++++|+ .+++
T Consensus 87 ~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 87 RDMK-----------NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHcc-----------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 9999 99999999999999999975 67778888888 8888
Q ss_pred HHHHHHHHHhcc
Q 028992 137 HMELHKHGINQQ 148 (200)
Q Consensus 137 ~~~l~~~~~~~~ 148 (200)
+.+++..+..++
T Consensus 156 ~~~l~~~~~~~~ 167 (228)
T 4i17_A 156 LYSLGVLFYNNG 167 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776544
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=4.3e-17 Score=127.59 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=87.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
.+++..+..+...+++++.++|+++++++++|.++...|++ ++|+..|+++++++|+++.+|++||.+|.
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRI----------EEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 36677788888889999999999999999999999999999 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+| +|++|+.+|++|++++|++.
T Consensus 82 ~~g-----------~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 82 IKE-----------QFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHSSSCC
T ss_pred HHc-----------cHHHHHHHHHHHHhhCCCCc
Confidence 999 99999999999999999874
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=5.1e-16 Score=119.42 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|+++.+|+++|.++..+|++ ++|+..|++|++++|+++.+++++|.+|.
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----------DLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44677899999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++++|+.+|+++++++|+++
T Consensus 101 ~~g-----------~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 101 QXG-----------ELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHHTTCG
T ss_pred HcC-----------CHHHHHHHHHHHHHHCcCCC
Confidence 988 99999999999999998875
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.67 E-value=2.9e-16 Score=116.91 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=84.8
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+-+.+.+++|+..++++++.+|+++++|+.+|.++..+|++ ++|+..|++|++++|++++++++||.+|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 355778999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
...| ++++|+.+|+++++++|++.
T Consensus 96 ~~~g-----------~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEH-----------NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHH-----------HHHHHHHHHHHHHC------
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCcCCC
Confidence 9988 99999999999999999864
No 18
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=4e-16 Score=117.77 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=90.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|+++.+|+++|.++..+|++ ++|+..|++|++++|+++.+++++|.+|.
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY----------EQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
.+| ++++|+.+|+++++++|+++.+.
T Consensus 98 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 98 QLG-----------DLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCcchH
Confidence 999 99999999999999999886443
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.67 E-value=5.4e-16 Score=119.05 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=93.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.++++++++|+++.+++++|.++..++++ ++|+..|+++++++|+++.+|+++|.+|.
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH----------EKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL--YQKSLE 128 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~--y~kAle 128 (200)
.+| ++++|+.+|+++++++|++.. +++++.
T Consensus 91 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 91 DMA-----------DYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred Hcc-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999 999999999999999999864 566554
No 20
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=6.5e-16 Score=115.76 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=88.9
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-------HHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-------YTL 79 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-------~a~ 79 (200)
.+-+.+.|++|++.|+++++++|+++.+++++|.++..+|++ ++|+..|++|++++|++. .+|
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF----------AECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------HHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456788999999999999999999999999999999999999 999999999999999874 578
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
+++|.++..+| ++++|+++|++++.++|+....++
T Consensus 87 ~~lg~~~~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQN-----------DLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCcCHHHHHH
Confidence 88899998888 999999999999999998655443
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=3e-16 Score=121.38 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+...++.|.+.+++++.++|++.+++..+|.++..+|++ ++|+..|+++++++|+++.+++++|.+|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH----------DKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc----------hhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 3445666666777777777777777777777777766666 777777777777777777777777777777
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~ 124 (200)
+| ++++|+.+|++|++++|+++.|+
T Consensus 154 ~g-----------~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 154 KG-----------LRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp TT-----------CHHHHHHHHHHHHHTTHHHHHHC
T ss_pred CC-----------CHHHHHHHHHHHHhCCccCHHHH
Confidence 66 77777777777777777666554
No 22
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.65 E-value=1.6e-16 Score=116.32 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=88.2
Q ss_pred HhchHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAK---DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~---~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.++.|++|++.+++++++ +|+++.+++++|.++..+|++ ++|+..|+++++++|+++.+++++|.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY----------RKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 357889999999999999 699999999999999999999 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHhC
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSLEVS 130 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---~y~kAle~~ 130 (200)
...| ++++|+.+|+++++.+|+++ .|.+++...
T Consensus 72 ~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 72 YNLG-----------RYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHT-----------CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9998 99999999999999999987 445555443
No 23
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.65 E-value=5.2e-16 Score=124.13 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=88.7
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPL-------DAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--- 71 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~-------d~~-----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--- 71 (200)
.+.+++.|++|++.|+++++++|+ +.. +|+++|.++..+|++ ++|+.+|++||++
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~----------~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF----------DEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhhhc
Confidence 355788999999999999999999 544 999999999999999 9999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 72 ----DPAKHYTL----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 72 ----dP~~~~a~----~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|+++.+| +++|.++..+| ++++|+.+|++|++++|++.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lg-----------r~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCcH
Confidence 99999999 99999999999 99999999999999999986
No 24
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.4e-15 Score=122.20 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=94.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTR----------------WGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~----------------lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+-+.+.|++|+..++++++.+|+++++++. +|.++..+|++ ++|+..|++++++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~ 83 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY----------DKAYLFYKELLQK 83 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHH
Confidence 346678999999999999999999999999 99999999998 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
+|+++++++++|.+|...| ++++|+.+|+++++++|++ +++|.++|..+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~P~~-------------~~a~~~lg~~~~~ 134 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRG-----------QEKDALRMYEKILQLEADN-------------LAANIFLGNYYYL 134 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCC-------------HHHHHHHHHHHHH
Confidence 9999999999999999988 9999999999999999876 4556666665543
No 25
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.63 E-value=2.5e-15 Score=115.08 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=91.9
Q ss_pred HHHHhchHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAK------------------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA 68 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~------------------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A 68 (200)
.+-+.+.|++|++.|++++.+ +|.++.+++++|.++..++++ ++|+..+++|
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------~~A~~~~~~a 89 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL----------HEAEETSSEV 89 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------HHHHHHHHHH
Confidence 345678999999999999999 788889999999999999999 9999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 028992 69 LVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-LYQKSL 127 (200)
Q Consensus 69 L~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-~y~kAl 127 (200)
|+++|+++.+|+.+|.+|..+| ++++|+.+|+++++++|++. ..+..+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAW-----------KLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHh-----------cHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999 99999999999999999987 544444
No 26
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=2.3e-15 Score=115.72 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=91.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992 19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98 (200)
Q Consensus 19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~ 98 (200)
..+++++.++|++++.++++|.++...|++ ++|+..|++++.++|+++.+|+++|.+|..+|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-------- 69 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXY----------EDAHXVFQALCVLDHYDSRFFLGLGACRQAMG-------- 69 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--------
Confidence 467888999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992 99 AKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 99 a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
++++|+.+|++|+.++|++. .|+++++++|+.|+...-..
T Consensus 70 ---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 70 ---QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp ---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 99999999999999999885 67777777777776644333
No 27
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=9e-15 Score=116.93 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=87.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-------HHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-------YTLW 80 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-------~a~~ 80 (200)
+.+++.|++|++.++++++.+|+++.++.++|.++..+|++ ++|+..|+++++++|+++ .+++
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN----------QEYIATLTEGIKAVPGNATIEKLYAIYYL 121 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999998 999999999999999999 6799
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
++|.++...| ++++|+.+|+++++++|+
T Consensus 122 ~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 122 KEGQKFQQAG-----------NIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHTT-----------CHHHHHHHHHHHTTSSCH
T ss_pred HHhHHHHHhc-----------cHHHHHHHHHHHHhcCCC
Confidence 9999999988 999999999999999999
No 28
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.61 E-value=1.5e-14 Score=123.87 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=111.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.|++|++.+++++.++|+++.++.++|.++...|++ ++|+..|+++++++|++++++.++|.++.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI----------DLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..| ++++|+.+|+++++++|++. .|++++++.|+.+++|.+++..+..
T Consensus 283 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 283 EKG-----------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHS-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HcC-----------CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 988 99999999999999999986 7888999999999999999998886
Q ss_pred ccc
Q 028992 147 QQT 149 (200)
Q Consensus 147 ~~~ 149 (200)
++-
T Consensus 352 ~g~ 354 (388)
T 1w3b_A 352 QGK 354 (388)
T ss_dssp TTC
T ss_pred cCC
Confidence 553
No 29
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=3.1e-15 Score=143.49 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=90.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.+++|++.++++++++|+++++++++|.+|..+|++ ++|++.|++|++++|+++++|++||.+|.
T Consensus 53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~----------~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV----------QGALQCYTRAIQINPAFADAHSNLASIHK 122 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+| ++++|+.+|++|++++|++.
T Consensus 123 ~~g-----------~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 123 DSG-----------NIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCSCCH
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCh
Confidence 999 99999999999999999997
No 30
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.60 E-value=2.5e-14 Score=122.51 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=28.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~ 48 (200)
.+.+.+++|++.+++++.++|+++++++++|.++...|++
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH
Confidence 4556677777777777777777777777777777777766
No 31
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=4.7e-14 Score=99.22 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=91.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|+++.++.++|.++...+++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY----------QKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
..| ++++|+.+|+++++.+|++......+
T Consensus 84 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 84 FLN-----------RFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999 99999999999999999887544433
No 32
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=2.7e-15 Score=113.17 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=75.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992 19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98 (200)
Q Consensus 19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~ 98 (200)
..+++++.++|++++.++.+|.+++..|++ ++|+..|+++++++|+++.+|+++|.+|...|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-------- 66 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKW----------DDAQKIFQALCMLDHYDARYFLGLGACRQSLG-------- 66 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--------
Confidence 467788899999999999999999999998 99999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCH
Q 028992 99 AKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 99 a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++++|+.+|++|++++|++.
T Consensus 67 ---~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 67 ---LYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCT
T ss_pred ---hHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999875
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.59 E-value=2.3e-14 Score=121.42 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=81.3
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+-+.+.|++|++.+++++..+|+++.+++.+|.++..+|++ ++|+..|+++++++|+++.++.++|.+|
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE----------QAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..+| ++++|+.+|+++++++|+
T Consensus 144 ~~~g-----------~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 144 TNTS-----------HQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHCHH
T ss_pred Hccc-----------cHHHHHHHHHHHHHhCcc
Confidence 9998 666666666666655554
No 34
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.59 E-value=1.5e-14 Score=106.19 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=87.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|+++.+++++|.++..++++ ++|+..|+++++++|+++.+++++|.+|.
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..| ++++|+.+|+++++++|+
T Consensus 89 ~~~-----------~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 89 EME-----------SYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHh-----------hHHHHHHHHHHHHHHChh
Confidence 999 999999999999999998
No 35
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.58 E-value=1.3e-14 Score=137.01 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=111.4
Q ss_pred HhchHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 10 RLLLSEHNRKTAEANY--------AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~--------~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
..+.+++|++.+++++ +.+|+++++++++|.++..+|++ ++|+..|+++++++|+++.+|++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDV----------AKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCH----------HHHHHHHHHHhccCcchHHHHHH
Confidence 3567899999999999 99999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHH
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
+|.+|..+| ++++|+.+|++|++++|++. .|+++++++|+.+++|.+++
T Consensus 473 lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 473 RAVAELLTG-----------DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHH
Confidence 999999988 99999999999999999985 58999999999999999999
Q ss_pred HHHHhccc
Q 028992 142 KHGINQQT 149 (200)
Q Consensus 142 ~~~~~~~~ 149 (200)
..+..++-
T Consensus 542 ~~~~~~g~ 549 (681)
T 2pzi_A 542 RARSAEGD 549 (681)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99986653
No 36
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-14 Score=102.86 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=87.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+.+.|++|++.++++++.+|+++.++.++|.++...+++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF----------QLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45678999999999999999999999999999999998888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++++|+.+|+++++.+|++.
T Consensus 96 ~~~-----------~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 96 AMK-----------DYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCGGGT
T ss_pred HHh-----------hHHHHHHHHHHHHHhCCCch
Confidence 988 99999999999999988763
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.3e-13 Score=109.19 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=60.8
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+++.+++|++.++++++.+|+++.++..+|.++...|++ ++|+..|+++++++|+++.+++.+|.++...
T Consensus 69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY----------KEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555555554444 5555555555555555555555555555554
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
| ++++|+.+|+++++.+|++. .|+++++..|+.+..+..++..+..
T Consensus 139 ~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 139 E-----------QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp S-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred c-----------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4 55555555555555555543 4444445555555555555555543
No 38
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=6.1e-14 Score=101.85 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=93.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWS 81 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~ 81 (200)
+-+.+.|++|++.++++++.+|+++ ++++++|.++..+|++ ++|+..|+++++++|++ +++++.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF----------QLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 4567899999999999999999999 8999999999999998 99999999999999999 999999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle 128 (200)
+|.+|..+| ++++|+.+|+++++..|++.....+..
T Consensus 82 la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 82 LGLSQYGEG-----------KNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 999999999 999999999999999999986665553
No 39
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=5.6e-14 Score=105.80 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=107.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.++++++.+|.++.++..+|.++...+++ ++|+..|+++++++|+++.++.++|.++.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV----------DRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999998888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..| ++++|+.+|+++++.+|++. .|+++++..|..+..+..++..+..
T Consensus 88 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 88 QVQ-----------KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred Hhc-----------CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 988 99999999999999999886 6777788888888999988888875
Q ss_pred cc
Q 028992 147 QQ 148 (200)
Q Consensus 147 ~~ 148 (200)
++
T Consensus 157 ~~ 158 (186)
T 3as5_A 157 MG 158 (186)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 40
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=3.3e-14 Score=106.55 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=89.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|+++.++.++|.++..++++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------GYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
.+| ++++|+.+|+++++++|++..
T Consensus 93 ~~~-----------~~~~A~~~~~~a~~~~p~~~~ 116 (166)
T 1a17_A 93 ALG-----------KFRAALRDYETVVKVKPHDKD 116 (166)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHSTTCHH
T ss_pred Hhc-----------cHHHHHHHHHHHHHhCCCCHH
Confidence 999 999999999999999999874
No 41
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.57 E-value=4.3e-14 Score=119.79 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=87.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
+.+++.+++|++.++++++.+|+ ++.+++++|.++..+|++ ++|+..|+++++++|+++.++.++|.+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF----------NRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34577899999999999999999 999999999999999998 999999999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
|...| ++++|+.+|+++++++|++.
T Consensus 257 ~~~~g-----------~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 257 LANGD-----------RSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcC-----------CHHHHHHHHHHHHhcCCCch
Confidence 99999 99999999999999999875
No 42
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.2e-14 Score=102.78 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
+-+.+.|++|++.++++++.+|++ ..++.++|.++..++++ ++|+..|+++++++|+++.+++++|.
T Consensus 38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY----------DKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH----------HHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 446678999999999999999998 99999999999999998 99999999999999999999999999
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
+|...| ++++|+.+|+++++++|++......+
T Consensus 108 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 108 ALEKLG-----------RLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHT-----------CHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHcC-----------CHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 999988 99999999999999999987665554
No 43
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.56 E-value=1.5e-13 Score=98.10 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=88.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.+++++..+|+++.++..+|.++...+++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY----------AGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch----------HHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++++|+.+|+++++.+|++.
T Consensus 92 ~~~-----------~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 92 SLN-----------KHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHSTTCH
T ss_pred HhC-----------CHHHHHHHHHHHHhcCccch
Confidence 988 99999999999999988764
No 44
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.56 E-value=2.9e-14 Score=114.42 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=89.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.+++|++.++++++++|+++++++++|.++..+|++ ++|+..|+++++++|+++++++++|.+|.
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE----------KDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999 99999999999999999999999999987
Q ss_pred hcCc-------------ccCCh-----------HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGF-------------LTADL-----------SEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~-------------l~~~~-----------~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..|. +.|.. ....++|++|+.+|++|++++|+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 6551 11211 1224578889999999999999865
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.9e-13 Score=106.41 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=110.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.++++++.+|+++.++..+|.++...|++ ++|+..|+++++++|++..++.++|.++.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN----------DKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hc-CcccCChHHhhcCHHHHHHHHHHHHH--hCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 88 SC-GFLTADLSEAKGDFDKASECFQRAVD--EEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 88 ~~-G~l~~~~~~a~~~~d~A~~~fqkAl~--l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
.. | ++++|+.+|+++++ .+|++. .|+++++..|..+..+..++..
T Consensus 88 ~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 88 GRLN-----------RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp TTTC-----------CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcC-----------cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 98 8 99999999999999 555544 7888889999999999999998
Q ss_pred HHhccc
Q 028992 144 GINQQT 149 (200)
Q Consensus 144 ~~~~~~ 149 (200)
+..++.
T Consensus 157 ~~~~~~ 162 (225)
T 2vq2_A 157 KMLAGQ 162 (225)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 876543
No 46
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.55 E-value=1e-13 Score=116.59 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=107.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
-+.+.+++|++.++++++.+|+ ++.++.++|.++...|++ ++|+..|+++++++|+++.++.++|.++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY----------DKAVDCFTAALSVRPNDYLLWNKLGATL 261 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 3778999999999999999999 899999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC-----------h
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA-----------P 134 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~-----------~ 134 (200)
...| ++++|+.+|+++++++|++. .|++++++.|+. +
T Consensus 262 ~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 262 ANGN-----------QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 9998 99999999999999999886 677777777777 7
Q ss_pred HHHHHHHHHHHhcc
Q 028992 135 ELHMELHKHGINQQ 148 (200)
Q Consensus 135 e~~~~l~~~~~~~~ 148 (200)
..+..++..+..++
T Consensus 331 ~~~~~l~~~~~~~g 344 (368)
T 1fch_A 331 NIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 78888887776443
No 47
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.55 E-value=5.9e-15 Score=139.32 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=110.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+++.|++|++.++++++.+|+++++++++|.++..+|++ ++|+..|++|++++|+++.+++++|.+|.
T Consensus 443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY----------DSATKHFTEVLDTFPGELAPKLALAATAE 512 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
.+| ++++ +.+|++|++++|++. .|+++++++|+.+++|.+++..++.
T Consensus 513 ~~g-----------~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 513 LAG-----------NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHT-----------CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HcC-----------ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 988 9999 999999999999996 7778888999999999999999864
No 48
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.55 E-value=9.4e-14 Score=114.25 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=104.2
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
-+++.+++|+..++++++.+|+++.+++.+|.++...+ ++ ++|+..|+++++++|+++.++..+|.++.
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN----------EHARRYLSKATTLEKTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH----------HHHHHHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888877 66 89999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..| ++++|+.+|+++++.+|++. .|++++++.|+.+.++.+++..+..
T Consensus 137 ~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 137 VES-----------EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHT-----------CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred Hcc-----------CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 988 99999999999999999874 7888999999999999999998875
Q ss_pred cc
Q 028992 147 QQ 148 (200)
Q Consensus 147 ~~ 148 (200)
++
T Consensus 206 ~~ 207 (330)
T 3hym_B 206 NG 207 (330)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=7.6e-14 Score=110.51 Aligned_cols=120 Identities=15% Similarity=0.226 Sum_probs=106.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+.+.+++|++.++++++.+|+++.++..+|.++...+++ ++|+..|+++++++|++..+++.+|.++..
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNEL----------ERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp --------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.| ++++|+.+|+++++.+|++. .|++++++.|+.+.++..++..+..+
T Consensus 104 ~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 104 KE-----------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE 172 (243)
T ss_dssp TT-----------CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hc-----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 88 99999999999999999986 78889999999999999999988865
Q ss_pred cc
Q 028992 148 QT 149 (200)
Q Consensus 148 ~~ 149 (200)
+.
T Consensus 173 ~~ 174 (243)
T 2q7f_A 173 GM 174 (243)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6e-14 Score=102.62 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
|.+++.+..+|.+++..|++ ++|+..|+++++++|+++.+++++|.+|..+| ++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDW----------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-----------SFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-----------CHHHHHH
Confidence 56788999999999999998 99999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhCCCCH---------------------HHHHHHHhC------CCChHHHHHHHHHH
Q 028992 109 CFQRAVDEEPTNE---------------------LYQKSLEVS------TKAPELHMELHKHG 144 (200)
Q Consensus 109 ~fqkAl~l~P~~~---------------------~y~kAle~~------~k~~e~~~~l~~~~ 144 (200)
+|+++++++|++. .|+++++++ |+.++++..+.+..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999986 666677777 66666666666543
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=4e-14 Score=127.81 Aligned_cols=128 Identities=14% Similarity=0.096 Sum_probs=109.6
Q ss_pred HHhchH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 9 DRLLLS-EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 9 ~~l~~f-e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
.+++.| ++|++.++++++++|+++++++++|.++..+|++ ++|+.+|++|++++|+ +.++.++|.+|.
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~-~~~~~~lg~~~~ 181 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV----------TSAHTCFSGALTHCKN-KVSLQNLSMVLR 181 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTCCC-HHHHHHHHHHHT
T ss_pred HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence 345688 9999999999999999999999999999999998 9999999999999999 799999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------------HHHHHHHhCC---CChH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------LYQKSLEVST---KAPE 135 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------------~y~kAle~~~---k~~e 135 (200)
.++ .....+..+++++|+.+|++|++++|++. .|+++++++| ..+.
T Consensus 182 ~~~--~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 182 QLQ--TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TCC--CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred Hhc--cCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 981 01111222399999999999999999975 3667778899 9999
Q ss_pred HHHHHHHHHHhccc
Q 028992 136 LHMELHKHGINQQT 149 (200)
Q Consensus 136 ~~~~l~~~~~~~~~ 149 (200)
+|.+++..+..++-
T Consensus 260 ~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 260 LHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998886553
No 52
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.54 E-value=6e-14 Score=127.92 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+.+++|++.++++++.+|++++++.++|.++...|++ ++|+..|+++++++|+++.+++++|.+|..+|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 71 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDT----------TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ- 71 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Confidence 3578888888888888888888888888888888887 88888888888888888888888888888888
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
++++|+.+|+++++++|++. .|+++++++|+.++++.+++..+..+
T Consensus 72 ----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 72 ----------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 88889999999888888886 77888888888888998888888766
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.3e-14 Score=111.01 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=108.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH----------
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD-------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---------- 70 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d-------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~---------- 70 (200)
+.+++.+++|++.++++++++|++ +.++..+|.++..++++ ++|+..|+++++
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL----------KKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCchhHHHHH
Confidence 456789999999999999999988 89999999999999998 666666666666
Q ss_pred ----------------hCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------
Q 028992 71 ----------------IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------- 121 (200)
Q Consensus 71 ----------------ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------- 121 (200)
++|+++.++..+|.++...| ++++|+.+|+++++.+|++.
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 186 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS-----------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL 186 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 88889999999999999988 99999999999999999987
Q ss_pred --------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 122 --------LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 122 --------~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
.|+++++++|+.++++..++..+..++.
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 7888999999999999999998886653
No 54
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.6e-14 Score=111.27 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=93.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.+++|++.+++++..+|.++.++.++|.++...|++ ++|+..|+++++++|+++.+++++|.+|.
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 184 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW----------PNAVKAYTEMIKRAPEDARGYSNRAAALA 184 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 34455666666666666668999999999999999998888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhC------CCChHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVS------TKAPELHMEL 140 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~------~k~~e~~~~l 140 (200)
..| ++++|+.+|+++++.+|++. .|++++++. |...+++..+
T Consensus 185 ~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 185 KLM-----------SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HhC-----------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 988 99999999999999999987 566666666 6666666555
Q ss_pred HH
Q 028992 141 HK 142 (200)
Q Consensus 141 ~~ 142 (200)
.+
T Consensus 254 ~~ 255 (258)
T 3uq3_A 254 YK 255 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 55
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=7.6e-14 Score=97.51 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=88.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a 85 (200)
+-+.+.+++|+..++++++.+|.++.++.++|.++..++++ ++|+..|+++++++|+ +..+++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY----------EEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34677899999999999999999999999999999999998 9999999999999999 99999999999
Q ss_pred HHhc-CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 86 HTSC-GFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 86 ~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+... | ++++|+++|++++..+|++
T Consensus 86 ~~~~~~-----------~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEG-----------KEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSS-----------CSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhC-----------CHHHHHHHHHHHhhcccCC
Confidence 9999 9 9999999999999999975
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=3.3e-13 Score=95.49 Aligned_cols=94 Identities=27% Similarity=0.431 Sum_probs=88.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+.+.+++|++.+++++..+|+++.++..+|.++...+++ ++|+..|+++++++|+++.+++.+|.+|.
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
..| ++++|+.+|+++++.+|++..
T Consensus 89 ~~~-----------~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 89 KQG-----------DYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred Hhc-----------CHHHHHHHHHHHHHhCCCcHH
Confidence 988 999999999999999887754
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=3e-13 Score=113.69 Aligned_cols=91 Identities=20% Similarity=0.097 Sum_probs=80.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.++++++.+|+++.+++.+|.++...|++ ++|+..|+++++++|+++.+++.+|.+|.
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE----------LLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..| ++++|+.+|+++++.+|+
T Consensus 144 ~~g-----------~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 144 NES-----------LQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HTT-----------CHHHHHHHHHHHHHTSTT
T ss_pred HcC-----------CHHHHHHHHHHHHHhCcC
Confidence 988 555555555555555554
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=2e-13 Score=113.01 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=77.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|++++++..+|.++..+|++ ++|+..|+++++++|+++.++..+|.++.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS----------KAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45677899999999999999999999999999999999888 89999999999999999999999999998
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
..| ++++|+.+|+++++.+|
T Consensus 83 ~~~-----------~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 83 KQG-----------KLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHT-----------CHHHHHHHHHHHHTSCC
T ss_pred HcC-----------ChHHHHHHHHHHHhcCC
Confidence 888 66666666666666666
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=4.4e-14 Score=127.55 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=108.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.+++|++.++++++++|+ +.++.++|.++..+.. ....+..+.+++|+..|++|++++|+++.+|++||.+|.
T Consensus 147 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL 224 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhcc-CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999 7999999999998711 000111133399999999999999999999999999999
Q ss_pred hc--------CcccCChHHhhcCHHHHHHHHHHHHHhCC---CCH---------------------HHHHHHHhCCCChH
Q 028992 88 SC--------GFLTADLSEAKGDFDKASECFQRAVDEEP---TNE---------------------LYQKSLEVSTKAPE 135 (200)
Q Consensus 88 ~~--------G~l~~~~~~a~~~~d~A~~~fqkAl~l~P---~~~---------------------~y~kAle~~~k~~e 135 (200)
.+ | ++++|+.+|++|++++| ++. .|+++++++|+.++
T Consensus 225 ~~~~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 225 SLYFNTGQNPK-----------ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHTTCCHH-----------HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhccccc-----------hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 87 6 99999999999999999 775 88999999999999
Q ss_pred HHHHHHHHHHhc
Q 028992 136 LHMELHKHGINQ 147 (200)
Q Consensus 136 ~~~~l~~~~~~~ 147 (200)
++.+++..+..+
T Consensus 294 a~~~l~~~~~~l 305 (474)
T 4abn_A 294 PQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877543
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=2.9e-13 Score=109.01 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+++.+++|++.++++++.+|+++.++.++|.++...|++ ++|+..|+++++++|+++.+++++|.+|..
T Consensus 54 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998888 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHM 138 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~ 138 (200)
.| ++++|+.+|+++++++|++. .|++++...|..+..+.
T Consensus 124 ~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (275)
T 1xnf_A 124 GG-----------RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN 182 (275)
T ss_dssp TT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred hc-----------cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH
Confidence 88 99999999999999999886 45566666666655543
No 61
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.53 E-value=5.3e-14 Score=108.46 Aligned_cols=92 Identities=10% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA-HT 87 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a-~~ 87 (200)
-..+.+++|++.++++++.+|++++++..+|.++...+++ ++|+..|+++++++|+++.+++++|.+ +.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY----------SNSLLAYRQALQLRGENAELYAALATVLYY 90 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999988 999999999999999999999999999 77
Q ss_pred hcCcccCChHHhhcCH--HHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDF--DKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~--d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++ ++|+.+|+++++.+|++.
T Consensus 91 ~~~-----------~~~~~~A~~~~~~al~~~p~~~ 115 (177)
T 2e2e_A 91 QAS-----------QHMTAQTRAMIDKALALDSNEI 115 (177)
T ss_dssp HTT-----------TCCCHHHHHHHHHHHHHCTTCH
T ss_pred hcC-----------CcchHHHHHHHHHHHHhCCCcH
Confidence 888 88 999999999999998875
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2e-13 Score=109.35 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=108.8
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+.+.+++|++.++++++.+|+++.++..+|.++...+++ ++|+..|+++++++|++..++.++|.+|..
T Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP----------KLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999888 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHH--hCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVD--EEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~--l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
.| ++++|+.+|+++++ .+|++. .|++++++.|..+.++..++..+.
T Consensus 118 ~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 118 QK-----------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp TT-----------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred Hh-----------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 88 99999999999999 777765 778888999999999999999887
Q ss_pred hcc
Q 028992 146 NQQ 148 (200)
Q Consensus 146 ~~~ 148 (200)
.++
T Consensus 187 ~~g 189 (252)
T 2ho1_A 187 KER 189 (252)
T ss_dssp HTT
T ss_pred HcC
Confidence 655
No 63
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.52 E-value=6.3e-15 Score=127.57 Aligned_cols=118 Identities=15% Similarity=0.185 Sum_probs=109.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--------------
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------------- 75 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------------- 75 (200)
.|..|++|++.++.++..+|+++..+.++|.+++..+++ ++|+..|++|++++|++
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~----------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 194 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKY----------KQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 356778888888899999999999999999999999998 99999999999999999
Q ss_pred -HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC
Q 028992 76 -HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA 133 (200)
Q Consensus 76 -~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~ 133 (200)
..+++++|.+|..+| ++++|+.+|++|++++|++. .|+++++++|+.
T Consensus 195 ~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQ-----------AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 699999999999999 99999999999999999997 788999999999
Q ss_pred hHHHHHHHHHHHhcc
Q 028992 134 PELHMELHKHGINQQ 148 (200)
Q Consensus 134 ~e~~~~l~~~~~~~~ 148 (200)
++++.+++..+..++
T Consensus 264 ~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998776443
No 64
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=2.3e-13 Score=107.34 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=90.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDA----------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~----------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+-+.+.|++|++.+++++.+.|.++ .+++++|.++..++++ ++|+..|++++++
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~ 117 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY----------PKAIDHASKVLKI 117 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHh
Confidence 4567899999999999999999998 8999999999999998 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
+|+++.+++++|.+|..+| ++++|+.+|+++++++|++...+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFG-----------FLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp STTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHCCCcHHHHH
Confidence 9999999999999999988 999999999999999998864433
No 65
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.51 E-value=2.7e-14 Score=103.37 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
++|++.++++++.+|+++.+++++|.++...|++ ++|+..|+++++++|+++.+++++|.+|...|
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 67 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF----------DAALPHLRAALDFDPTYSVAWKWLGKTLQGQG---- 67 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC----
Confidence 4678899999999999999999999999999998 99999999999999999999999999999988
Q ss_pred ChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 95 DLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 95 ~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
++++|+.+|+++++++|++
T Consensus 68 -------~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 68 -------DRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp -------CHHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhcccc
Confidence 9999999999999998854
No 66
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=3.8e-13 Score=110.46 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=107.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+.+.+++|++.++++++.+|.++.++..+|.++...|++ ++|+..|+++++++|+++.++.++|.++.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY----------DSAAANLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCC------------Ch
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTK------------AP 134 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k------------~~ 134 (200)
..| ++++|+.+|+++++.+|++. .|++++++.|+ .+
T Consensus 218 ~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 218 NGN-----------RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 988 99999999999999999986 66777777777 67
Q ss_pred HHHHHHHHHHHhcc
Q 028992 135 ELHMELHKHGINQQ 148 (200)
Q Consensus 135 e~~~~l~~~~~~~~ 148 (200)
..+..++..+..++
T Consensus 287 ~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 287 SMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777776443
No 67
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.8e-13 Score=112.53 Aligned_cols=119 Identities=14% Similarity=0.064 Sum_probs=106.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC---------CCCHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID---------PAKHYT 78 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld---------P~~~~a 78 (200)
+.+++.+++|++.++++++.+|+++.++..+|.++...+++ ++|+..|++++++. |..+.+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 44667888999999999999999999999999999988888 99999999999997 788899
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHH
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELH 137 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~ 137 (200)
++++|.+|...| ++++|+.+|+++++++|++. .|+++++++|+.+..+
T Consensus 239 ~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 239 LNNLGHVCRKLK-----------KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HHHHHHHHHHhc-----------CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 999999999999 99999999999999999985 7777888899999999
Q ss_pred HHHHHHHHhc
Q 028992 138 MELHKHGINQ 147 (200)
Q Consensus 138 ~~l~~~~~~~ 147 (200)
..++..+..+
T Consensus 308 ~~l~~~~~~~ 317 (330)
T 3hym_B 308 TMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999887533
No 68
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.51 E-value=2.4e-13 Score=117.65 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=91.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---------------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
+-+++.|++|++.|++++.++|++ +.+++++|.++..++++ ++|+..|++|++++
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF----------SAAIESCNKALELD 226 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhC
Confidence 456789999999999999999999 79999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992 73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (200)
Q Consensus 73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k 125 (200)
|+++.+++++|.+|..+| ++++|+.+|++|++++|++.....
T Consensus 227 p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~~ 268 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLYPNNKAAKT 268 (336)
T ss_dssp TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred CCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999 999999999999999999984433
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.4e-13 Score=105.39 Aligned_cols=96 Identities=24% Similarity=0.307 Sum_probs=88.9
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
.++.+++.++.+|.+++..+++ ++|+..|+++++++|+++.+++++|.+|..+| ++++|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A 64 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEY----------SKAIDLYTQALSIAPANPIYLSNRAAAYSASG-----------QHEKA 64 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-----------CHHHH
Confidence 4567899999999999999998 99999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 107 SECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
+.+|+++++++|++. .|+++++++|+.++.|.+.+..
T Consensus 65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999987 8889999999999977666643
No 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.51 E-value=5.2e-13 Score=115.46 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=81.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.++++++.+|+++.+++.+|.++..+|++ ++|+..|+++++++|+++.+++.+|.+|.
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS----------KAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.+| ++++|+.+|+++++.+|++
T Consensus 106 ~~g-----------~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 106 KQG-----------KLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HTT-----------CHHHHHHHHHHHHTSCCCH
T ss_pred HcC-----------CHHHHHHHHHHHHhcCCCC
Confidence 988 6667777776666666654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=2e-13 Score=115.32 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCc
Q 028992 14 SEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHTSCGF 91 (200)
Q Consensus 14 fe~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~~~~G~ 91 (200)
+++|+..++++++ ++|++..+|.++|.++...|++ ++|+..|+++++++|++++ +|.++|.++..+|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~- 148 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE- 148 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhc-
Confidence 5999999999999 7999999999999999998888 9999999999999999997 9999999999988
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
++++|..+|++|++.+|.+. .|+++++.+|+.++++.+++..+..++.
T Consensus 149 ----------~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 218 (308)
T 2ond_A 149 ----------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp ----------CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999988652 6788999999999999999988876553
No 72
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.3e-13 Score=111.41 Aligned_cols=129 Identities=15% Similarity=0.088 Sum_probs=101.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc---------------------------ccccHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------------------------SKKIINEA 61 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~---------------------------~~~~~~eA 61 (200)
-+.+.|++|++.++++++.+|+++.++..+|.++..+|++..+.+ ..+.+++|
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence 345667777777777777777777777777777777666543210 11345899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------
Q 028992 62 ISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------- 121 (200)
Q Consensus 62 i~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------- 121 (200)
+..|+++++++|+++.++.++|.+|...| ++++|+.+|+++++.+|++.
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKG-----------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 99999999999999999886
Q ss_pred -HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 122 -LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 122 -~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
.|++++++.|+.+..+..++..+..++
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 567788899999999999998887654
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=3e-13 Score=110.55 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=86.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWS 81 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~ 81 (200)
+-+.+.|++|++.++++++.+|++ +++++.+|.++..+|++ ++|+..|+++++++|++ +.+++.
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY----------LLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 446789999999999999999999 99999999999999998 99999999999998855 679999
Q ss_pred HHHHHHh--------cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 82 LGNAHTS--------CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 82 LG~a~~~--------~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+|.++.. .| ++++|+.+|+++++.+|++.
T Consensus 95 lg~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQT-----------DTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHCCCTTSCCH-----------HHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHhcccccccch-----------hHHHHHHHHHHHHHHCcCch
Confidence 9999999 78 99999999999999999974
No 74
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=8.3e-13 Score=105.78 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=110.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV--IDPAKHYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~--ldP~~~~a~~~LG~a 85 (200)
+.+++.+++|++.++++++.+|+++.++.++|.++...|++ ++|+..|+++++ .+|.+..+++++|.+
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY----------EEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 45678999999999999999999999999999999999988 999999999999 899999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~ 144 (200)
+...| ++++|+.+|+++++.+|++. .|+++++..|..+..+..++..+
T Consensus 151 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 151 SLQMK-----------KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHTT-----------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHcC-----------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 99988 99999999999999999986 67788888999999998888887
Q ss_pred Hhcc
Q 028992 145 INQQ 148 (200)
Q Consensus 145 ~~~~ 148 (200)
..++
T Consensus 220 ~~~g 223 (252)
T 2ho1_A 220 KVFE 223 (252)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 7544
No 75
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=1e-13 Score=112.06 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
|++.+++.|.++...|++ ++|+..|+++++++|+++.+++.+|.+|...| ++++|+.+|
T Consensus 2 n~~~~~~~a~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~ 60 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNY----------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA-----------KYDLAQKDI 60 (272)
T ss_dssp ---CHHHHHHHHHTTTCH----------HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-----------hHHHHHHHH
Confidence 467889999999999998 99999999999999999999999999999988 888888888
Q ss_pred HHHHHhCCCCH-------------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 111 QRAVDEEPTNE-------------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 111 qkAl~l~P~~~-------------------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
+++++ .|++. .|+++++++|..+.++.+++..+..++
T Consensus 61 ~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 122 (272)
T 3u4t_A 61 ETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122 (272)
T ss_dssp HHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence 88887 33322 677777888888888888887776544
No 76
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=7.3e-13 Score=115.69 Aligned_cols=120 Identities=10% Similarity=0.115 Sum_probs=106.7
Q ss_pred HHHhchHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-------
Q 028992 8 FDRLLLSEHNRKTAEANYAK---------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------- 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~---------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------- 71 (200)
+.+++.+++|++.+++++++ +|....++.++|.++..+|++ ++|+..|++++++
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~----------~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL----------SDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhHhcccc
Confidence 35678999999999999986 788899999999999999998 9999999999998
Q ss_pred -CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHH
Q 028992 72 -DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKS 126 (200)
Q Consensus 72 -dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kA 126 (200)
++..+.++.++|.++...| +++|++|+.+|++|++++|++. .|+++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~---------~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCG---------GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHC---------TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 4567899999999988876 5689999999999999999986 67899
Q ss_pred HHhCCCChHHHHHHHHHHHh
Q 028992 127 LEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 127 le~~~k~~e~~~~l~~~~~~ 146 (200)
++++|+.+.++.+++..+..
T Consensus 202 l~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHH
T ss_pred hhcCCcchHHHHHHHHHHHH
Confidence 99999999999999876643
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.49 E-value=1.6e-12 Score=92.36 Aligned_cols=93 Identities=26% Similarity=0.426 Sum_probs=87.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.+++++..+|+++..+..+|.++...+++ ++|+..|++++.++|+++.+++++|.++.
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++++|+.+|+++++.+|++.
T Consensus 81 ~~~-----------~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 81 KQG-----------DYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp TTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred Hhc-----------CHHHHHHHHHHHHHhCCCCh
Confidence 988 99999999999999988764
No 78
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.49 E-value=3.2e-13 Score=113.72 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=102.9
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+-+.+.|++|++.+++++..+|+++.+++++|.++..+|++ ++|+..|++|++++|+++.+++++|.+|
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 355778999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
..+| ++++|+.+|+++++++|++. ..+......+..++++.-++..+.
T Consensus 83 ~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 83 LEME-----------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999 99999999999999999873 112222446777777777766553
No 79
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.48 E-value=8.3e-13 Score=109.25 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=111.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC---CCHHHHHHH--
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP---AKHYTLWSL-- 82 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP---~~~~a~~~L-- 82 (200)
+-+++.+++|++.++++++.+|+++.++..+|.++...|++ ++|+..|+++++++| +++.++..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL----------DEAEDDFKKVLKSNPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 999999999999999 999999888
Q ss_pred ----------HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCC
Q 028992 83 ----------GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVST 131 (200)
Q Consensus 83 ----------G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~ 131 (200)
|.++...| ++++|+.+|+++++.+|++. .|+++++..|
T Consensus 117 ~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 117 ADEMQRLRSQALDAFDGA-----------DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 68888888 99999999999999999986 7888889999
Q ss_pred CChHHHHHHHHHHHhcc
Q 028992 132 KAPELHMELHKHGINQQ 148 (200)
Q Consensus 132 k~~e~~~~l~~~~~~~~ 148 (200)
+.++.+..++..+..++
T Consensus 186 ~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLG 202 (359)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999887654
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.48 E-value=2.5e-13 Score=101.55 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~ 109 (200)
+.+.++.++|.+++..|+| ++|+.+|++|++++|+++.+|.++|.+|..+| +|++|+.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~----------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-----------~~~~A~~~ 64 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDF----------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-----------KFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-----------hHHHHHHH
Confidence 4467788999999999999 99999999999999999999999999999999 99999999
Q ss_pred HHHHHHhCCCCH
Q 028992 110 FQRAVDEEPTNE 121 (200)
Q Consensus 110 fqkAl~l~P~~~ 121 (200)
|++|++++|++.
T Consensus 65 ~~~al~~~~~~~ 76 (127)
T 4gcn_A 65 CEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHhCcccc
Confidence 999999998763
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=1.3e-12 Score=101.70 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=105.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cCCcccccccccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-SQFESVSDSKKIINEAISKFEEALV--IDPAKHYTLWSLGN 84 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-~~~~~~~~~~~~~~eAi~~le~AL~--ldP~~~~a~~~LG~ 84 (200)
+.+++.+++|++.+++++..+|+++.++.++|.++... |++ ++|+..|+++++ .+|.+..+++++|.
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP----------AESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH----------HHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 45678899999999999999999999999999999998 888 999999999999 77888999999999
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCC-CChHHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVST-KAPELHMELHK 142 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~-k~~e~~~~l~~ 142 (200)
++...| ++++|+.+|+++++.+|++. .|+++++..| ..+..+..++.
T Consensus 122 ~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 190 (225)
T 2vq2_A 122 CSAKQG-----------QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK 190 (225)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHcC-----------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999988 99999999999999999986 6778888888 88888876666
Q ss_pred HHHh
Q 028992 143 HGIN 146 (200)
Q Consensus 143 ~~~~ 146 (200)
....
T Consensus 191 ~~~~ 194 (225)
T 2vq2_A 191 IAKA 194 (225)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 82
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.48 E-value=4.4e-13 Score=122.17 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=98.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.+++|++.++++++++|++++++.++|.++..+|++ ++|+..|+++++++|+++.+++++|.+|.
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH----------AEAAVLLQQASDAAPEHPGIALWLGHALE 102 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHM 138 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~ 138 (200)
..| ++++|+++|+++++++|++. .|+++++.+|+....+.
T Consensus 103 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 103 DAG-----------QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHH
Confidence 988 99999999999999999885 56677777777654443
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.48 E-value=6.6e-13 Score=94.88 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=86.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-------HHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------HYTLW 80 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------~~a~~ 80 (200)
+-+.+.+++|+..+++++..+|+++.++.++|.++...+++ ++|+..|++++.++|++ +.+++
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999988 99999
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
++|.+|...| ++++|+.+|+++++.+|+
T Consensus 84 ~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEE-----------KYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTT-----------CHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhc-----------cHHHHHHHHHHHHHhCCC
Confidence 9999999998 999999999999999985
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=1e-12 Score=98.76 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=89.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+.+.+++|++.++++++.+|+++.++..+|.++...+++ ++|+..|+++++++|+++.+++.+|.++.
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY----------DLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..| ++++|+.+|+++++.+|++.
T Consensus 122 ~~~-----------~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 122 NLG-----------RFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred HcC-----------cHHHHHHHHHHHHhcCccch
Confidence 988 99999999999999999987
No 85
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=4.6e-13 Score=107.86 Aligned_cols=110 Identities=25% Similarity=0.193 Sum_probs=100.7
Q ss_pred hchHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+.|++|++.++++++. +|.++.+++.+|.++...|++ ++|+..|+++++++|+++.++..+|.+|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR----------ALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 46899999999999998 467889999999999999998 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH 141 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~ 141 (200)
...| ++++|+.+|+++++++|++. .|++++++.|+.+..+..++
T Consensus 88 ~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 88 TQAG-----------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcc-----------CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9998 99999999999999999986 78889999999986665544
No 86
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=2.1e-12 Score=105.97 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=106.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++..+|+++.++..+|.++...|++ ++|+..|+++++++|++..++..+|.+|.
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD----------GLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------------------HHHHHHHhCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------------LYQKSLEVST 131 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------------------~y~kAle~~~ 131 (200)
..| ++++|+.+|+++++.+|++. .|+++++..|
T Consensus 101 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 101 NEH-----------NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HTT-----------CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HcC-----------CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 988 88888888888888887642 3667777888
Q ss_pred CChHHHHHHHHHHHhcc
Q 028992 132 KAPELHMELHKHGINQQ 148 (200)
Q Consensus 132 k~~e~~~~l~~~~~~~~ 148 (200)
..+.++..++..+..++
T Consensus 170 ~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSN 186 (327)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 88888888888776544
No 87
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=7.4e-14 Score=121.08 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=81.4
Q ss_pred HhchHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDA-----------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~-----------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
+.+.|++|+..|++++.++|++. .+++++|.+++.++++ ++|+..|++||+++
T Consensus 191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~~ 260 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY----------DEAIGHCNIVLTEE 260 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC----------HHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhC
Confidence 45689999999999999999988 4999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
|+++.+|+++|.+|..+| ++++|+.+|++|++++|++...+..|
T Consensus 261 p~~~~a~~~lg~a~~~~g-----------~~~~A~~~l~~al~l~p~~~~a~~~L 304 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELG-----------QMDSARDDFRKAQKYAPDDKAIRREL 304 (338)
T ss_dssp TTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHTTC------------
T ss_pred CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999 99999999999999999987555444
No 88
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=7.6e-13 Score=103.87 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=88.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-----------
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----------- 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----------- 76 (200)
+-+++.+++|++.+++++.++|+++.+++++|.++..+|++ ++|+..|+++++++|++.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 45788999999999999999999999999999999999998 999999999999998877
Q ss_pred -----HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 77 -----YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 77 -----~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+++++|.+|...| ++++|+.+|+++++++|++.
T Consensus 117 ~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKE-----------EWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCCSGG
T ss_pred CccchHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCcccc
Confidence 99999999999999 99999999999999999763
No 89
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.45 E-value=7.6e-13 Score=116.68 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=123.6
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+.+.+++|++.+++++..+|+ +.++..+|.++...+++ ++|+..|+++++++|+++.++..+|.+|..
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS----------QEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH----------HHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 4556789999999999999999 99999999999999998 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.| ++++|+.+|+++++.+|++. .|+++++..|+.++++..++..+..+
T Consensus 323 ~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 323 LQ-----------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp TT-----------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 98 99999999999999999985 78889999999999999999998866
Q ss_pred cccCCCCCcch--hhhhcccccchhhhhhhHHHHH
Q 028992 148 QTLGGGSSASS--AQSSKKKSSDLKYDIFGWAILA 180 (200)
Q Consensus 148 ~~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~ 180 (200)
+-. ..+.... .....+.+.+.++.++.+..+|
T Consensus 392 g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 392 GDF-DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp TCH-HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 532 1122222 2333455666666555444433
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=1.2e-12 Score=105.62 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=86.2
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLW 80 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~ 80 (200)
.+-+.+.|++|++.+++++..+|++ .++++++|.++..+|++ ++|+..|+++++++|+++. +++
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL----------PLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456789999999999999999987 47999999999999998 9999999999999999875 899
Q ss_pred HHHHHHHhcCc-------ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 81 SLGNAHTSCGF-------LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 81 ~LG~a~~~~G~-------l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+|.++...|. ..+......+++++|+.+|+++++.+|++.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 99999876320 001111123489999999999999999986
No 91
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.9e-13 Score=116.26 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
..|++|++.++++++++|+++++++.+|.++..++++ +..++|++.|++|++++|+++.++.++|.++...+
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-------~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~- 223 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-------PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR- 223 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS-------CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH-
Confidence 3699999999999999999999999999998776544 12278999999999999999999999998876654
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
...+++++|+.+|++++..+|++. .|++++++.|+.+.+|.+++..+.
T Consensus 224 ------~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 224 ------EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp ------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ------hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 223478899999999999999986 788999999999999999997664
No 92
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.45 E-value=3.3e-12 Score=90.23 Aligned_cols=99 Identities=32% Similarity=0.542 Sum_probs=85.6
Q ss_pred hCCCC-HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992 27 KDPLD-ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105 (200)
Q Consensus 27 ~~P~d-~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~ 105 (200)
.+|.+ +.+++.+|.++...+++ ++|+..|+++++++|++..+++.+|.++...| ++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~ 61 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDE 61 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-----------CHHH
Confidence 46766 88999999999999988 99999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 106 A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
|+.+|+++++.+|++. .|+++++++|..+.++.+++.....
T Consensus 62 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999886 6677777888888888887776553
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.44 E-value=2.3e-13 Score=106.93 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=82.7
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.|++|++.+++++ +| ++.+++++|.++..+|++ ++|+..|+++++++|+++.+++++|.+|.
T Consensus 16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNM----------TEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 346789999999999985 44 889999999999999998 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
..| ++++|+.+|++++++.|++
T Consensus 83 ~~~-----------~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 83 QTE-----------KYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HTT-----------CHHHHHHHHHHHHHTTTTC
T ss_pred Hcc-----------cHHHHHHHHHHHHHhCCCc
Confidence 999 9999999999999998875
No 94
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.44 E-value=7.3e-13 Score=119.36 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=85.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---------------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
+-+.+.|++|+..|+++++++|++ ..+++++|.+++.++++ ++|+..|++||+++
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY----------TKAVECCDKALGLD 347 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHS
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcC
Confidence 456789999999999999999999 79999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
|+++.+|+++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 348 p~~~~a~~~~g~a~~~~g-----------~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMN-----------EFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTC----
T ss_pred CccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999 99999999999999999987
No 95
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=1.3e-12 Score=93.08 Aligned_cols=101 Identities=20% Similarity=0.364 Sum_probs=90.5
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992 26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105 (200)
Q Consensus 26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~ 105 (200)
+.+|.++..+..+|.++...+++ ++|+..|+++++++|+++.+++.+|.++...| ++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~ 64 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENF----------EAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-----------NYAG 64 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-----------chHH
Confidence 45677889999999999999998 99999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 106 A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
|+.+|+++++.+|++. .|++++++.|+.+.++..++..+..+
T Consensus 65 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 9999999999999986 67778888888888888888776643
No 96
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=1.6e-12 Score=95.22 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=69.6
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992 26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105 (200)
Q Consensus 26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~ 105 (200)
..+|.+++.+..+|.++...+++ ++|+..|+++++++|+++.+++++|.++..+| ++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----------~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKY----------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc-----------CHHH
Confidence 45789999999999999999998 99999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCH
Q 028992 106 ASECFQRAVDEEPTNE 121 (200)
Q Consensus 106 A~~~fqkAl~l~P~~~ 121 (200)
|+.+|+++++++|++.
T Consensus 62 A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 62 ALADCRRALELDGQSV 77 (137)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCchhH
Confidence 9999999999999865
No 97
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=2.3e-12 Score=115.61 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=103.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCC-HHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAK-HYTLW 80 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~-~~a~~ 80 (200)
+.+.+.+++|++.++++++.+|.++.+++.+|.++...|++ ++|+..|++++++ +|++ ..++.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM----------QTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 34567788888888888888888888888888888887777 9999999999999 7775 78999
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHH
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~ 139 (200)
++|.+|..+| ++++|+.+|+++++++|++. .|+++++++|+.++.+..
T Consensus 521 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 521 NLGHAYRKLK-----------MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHTT-----------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999999999 99999999999999999986 788999999999999999
Q ss_pred HHHHHH
Q 028992 140 LHKHGI 145 (200)
Q Consensus 140 l~~~~~ 145 (200)
+++.+.
T Consensus 590 l~~~~~ 595 (597)
T 2xpi_A 590 LKRALE 595 (597)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 987654
No 98
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.44 E-value=2.1e-13 Score=97.73 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=67.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
.+|+++.+++++|.++..+|++ ++|+..|+++++++|+++.+|+++|.+|...| ++++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA----------SRALALFEELVETDPDYVGTYYHLGKLYERLD-----------RTDDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHH
Confidence 5899999999999999999998 99999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhCCCC
Q 028992 107 SECFQRAVDEEPTN 120 (200)
Q Consensus 107 ~~~fqkAl~l~P~~ 120 (200)
+.+|++++++.|++
T Consensus 61 ~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 61 IDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcC
Confidence 99999999997754
No 99
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=2.4e-12 Score=99.06 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=87.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEA-LLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~a-l~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+.+++.+++|++.++++++++|+++.++.++|.+ +...+++. .++|+..|+++++++|+++.+++++|.+|
T Consensus 54 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 54 YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM--------TAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc--------hHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3567899999999999999999999999999999 66766631 18999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
...| ++++|+.+|+++++++|++..
T Consensus 126 ~~~g-----------~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 126 FMQA-----------NYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHTCCTTSC
T ss_pred HHcc-----------cHHHHHHHHHHHHhhCCCCcc
Confidence 9998 999999999999999999853
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.42 E-value=8.3e-13 Score=111.34 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
|.+++.+..+|..+...|++ ++|+..|+++++++|++++++++||.+|...| ++++|+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-----------~~~~A~~ 172 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNY----------TDALPLLXDAWQLSNQNGEIGLLLAETLIALN-----------RSEDAEA 172 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCH----------HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC-----------CHHHHHH
Confidence 55555555555555555555 55555555555555555555555555555555 5555555
Q ss_pred HHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 109 CFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 109 ~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
+|++++..+|++. .|+++++.+|+.++++++++..+..+
T Consensus 173 ~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~ 232 (287)
T 3qou_A 173 VLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV 232 (287)
T ss_dssp HHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 5555555555332 34555555555555555555555433
No 101
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=2.8e-12 Score=110.82 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=102.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAIS 63 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~ 63 (200)
+-+.+.+++|++.++++++.+|.++.+++.+|.++...|++..+.. ..+.+++|+.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566677777777777777777777777777777777776654321 1245699999
Q ss_pred HHHHHHHhCCCCHHHHHHH------------HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------
Q 028992 64 KFEEALVIDPAKHYTLWSL------------GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------- 121 (200)
Q Consensus 64 ~le~AL~ldP~~~~a~~~L------------G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------- 121 (200)
.|+++++++|++..++..+ |.++...| ++++|+.+|+++++++|++.
T Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-----------RYTDATSKYESVMKTEPSIAEYTVRSKERI 301 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999999988777 99999988 99999999999999988863
Q ss_pred ---------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 122 ---------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 122 ---------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
.|++++++.|+.+.++..++..+..++
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 667777888888888888888887544
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.41 E-value=4.1e-13 Score=104.35 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=87.4
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc----------------c--------cHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK----------------K--------IINEAIS 63 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~----------------~--------~~~eAi~ 63 (200)
+-+.+.+++|+..++++++.+|+++++++++|.++...|++..+.... . ...+|+.
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence 456789999999999999999999999999999999999874321100 0 0123577
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHH
Q 028992 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 64 ~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~ 143 (200)
.|+++++++|+++.+++++|.++...| ++++|+.+|+++++.+|++ ..+.++.+++..
T Consensus 96 ~~~~al~~~P~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~-----------~~~~a~~~l~~~ 153 (176)
T 2r5s_A 96 RLEQELAANPDNFELACELAVQYNQVG-----------RDEEALELLWNILKVNLGA-----------QDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTT-----------TTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHhCccc-----------ChHHHHHHHHHH
Confidence 777777777777777777777777777 7777777777777777753 235577777776
Q ss_pred HHhcc
Q 028992 144 GINQQ 148 (200)
Q Consensus 144 ~~~~~ 148 (200)
+..++
T Consensus 154 ~~~~g 158 (176)
T 2r5s_A 154 LSALG 158 (176)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66444
No 103
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.41 E-value=1.3e-12 Score=96.91 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
+.++.+|.+++..|++ ++|+..|+++++++|+++.+|+++|.++...| ++++|+.+|++
T Consensus 18 ~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANL----------AEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----------KDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHH
Confidence 4678999999999998 99999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCH
Q 028992 113 AVDEEPTNE 121 (200)
Q Consensus 113 Al~l~P~~~ 121 (200)
|++++|++.
T Consensus 77 al~l~P~~~ 85 (121)
T 1hxi_A 77 ARMLDPKDI 85 (121)
T ss_dssp HHHHCTTCH
T ss_pred HHHhCCCCH
Confidence 999999875
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.41 E-value=2.4e-12 Score=113.45 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=99.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+++.+++|++.+++++..+|+++.++.++|.++...|++ ++|+..|+++++++|+++.++.++|.++..
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF----------TESEAFFNETKLKFPTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4566777788888888888888777888888887777777 899999999999999999999999999988
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCC------------------------------H-------HHHHHHHhCC
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTN------------------------------E-------LYQKSLEVST 131 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~------------------------------~-------~y~kAle~~~ 131 (200)
.| ++++|+.+|+++++.+|++ . .|++++++.|
T Consensus 391 ~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 391 RG-----------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp TT-----------CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred hC-----------CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 88 9999999999999988754 1 5667788899
Q ss_pred CChHHHHHHHHHHHhccc
Q 028992 132 KAPELHMELHKHGINQQT 149 (200)
Q Consensus 132 k~~e~~~~l~~~~~~~~~ 149 (200)
+.++++..++..+..++-
T Consensus 460 ~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999998886553
No 105
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=1.2e-12 Score=115.42 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=91.1
Q ss_pred HHHhchHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 8 FDRLLLSEHNRKTAEANYA----------------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~----------------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+-+.+.|++|++.|+++++ .+|.++.++.++|.+++.++++ ++|+..|++||++
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~ 302 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW----------QGAVDSCLEALEI 302 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHh
Confidence 4567789999999999999 8899999999999999999998 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
+|+++.+++++|.+|..+| ++++|+.+|++|++++|++...+..+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g-----------~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLK-----------EYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999 99999999999999999876544433
No 106
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.41 E-value=2.7e-13 Score=106.91 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=102.0
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-------------
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH------------- 76 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~------------- 76 (200)
-++.|+++.+.++......+..+..+..+|.+++..+++ ++|+..|+++++++|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEI----------NEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 355677777777777777778889999999999999998 999999999999999998
Q ss_pred ---HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCC
Q 028992 77 ---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTK 132 (200)
Q Consensus 77 ---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k 132 (200)
.+++++|.+|..+| ++++|+.+|+++++++|++. .|+++++++|+
T Consensus 86 ~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNK-----------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 89999999999998 99999999999999999986 78899999999
Q ss_pred ChHHHHHHHHHHHhcc
Q 028992 133 APELHMELHKHGINQQ 148 (200)
Q Consensus 133 ~~e~~~~l~~~~~~~~ 148 (200)
.++++..++.....++
T Consensus 155 ~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLK 170 (198)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 107
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.41 E-value=4.1e-12 Score=107.77 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++|+..|+++++.+|+++.+++++|.++..+| ++++|+.+|+++++.+|+++
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQG-----------RWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 55555555555555555555555555555555 55555555555555555543
No 108
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=7.4e-14 Score=125.85 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=103.0
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--------------
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------------- 75 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------------- 75 (200)
.+..|++|++.++.++..+|+++..+.++|.+++..+++ ++|+..|++|++++|++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~----------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 315 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKY----------MQAVIQYGKIVSWLEMEYGLSEKESKASESF 315 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence 345677788888888899999999999999999999998 99999999999999999
Q ss_pred -HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC
Q 028992 76 -HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA 133 (200)
Q Consensus 76 -~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~ 133 (200)
..+|+++|.+|..+| +|++|+.+|++|++++|++. .|+++++++|+.
T Consensus 316 ~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLR-----------EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 799999999999999 99999999999999999997 788999999999
Q ss_pred hHHHHHHHHHHHh
Q 028992 134 PELHMELHKHGIN 146 (200)
Q Consensus 134 ~e~~~~l~~~~~~ 146 (200)
++++.+++..+..
T Consensus 385 ~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 385 KAARLQISMCQKK 397 (457)
T ss_dssp -CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=5.4e-12 Score=89.64 Aligned_cols=92 Identities=26% Similarity=0.431 Sum_probs=87.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+.+.+++|++.+++++..+|.++.++..+|.++...+++ ++|+..|+++++++|++..+++.+|.++.
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34567899999999999999999999999999999998888 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
..| ++++|+.+|+++++.+|++
T Consensus 115 ~~~-----------~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 115 KQG-----------DYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTT-----------CHHHHHHHHHHHHHHSTTC
T ss_pred HHc-----------cHHHHHHHHHHHHccCCCC
Confidence 988 9999999999999999974
No 110
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.40 E-value=6.6e-12 Score=112.57 Aligned_cols=117 Identities=13% Similarity=0.022 Sum_probs=80.9
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
.+.+++|++.++++++.+|+++.+++.+|.++...|++ ++|+..|+++++++|+++.++.++|.+|...|
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI----------LLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 34444444444444444444444444444444444444 88888888888888888888888888888877
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHh------CCCC-H---------------------HHHHHHHhCCCChHHHHHHHH
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDE------EPTN-E---------------------LYQKSLEVSTKAPELHMELHK 142 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l------~P~~-~---------------------~y~kAle~~~k~~e~~~~l~~ 142 (200)
++++|+++|+++++. +|++ . .|++++++.|+.+..+..++.
T Consensus 490 -----------~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 490 -----------DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888888888 6663 2 677788888888888888888
Q ss_pred HHHhcc
Q 028992 143 HGINQQ 148 (200)
Q Consensus 143 ~~~~~~ 148 (200)
.+..++
T Consensus 559 ~~~~~g 564 (597)
T 2xpi_A 559 VYLHKK 564 (597)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 877554
No 111
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=2.3e-12 Score=109.29 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
+.+++|++.++++++.+|+++.+++++|.++..+|++ ++|+..|++|++++|+++++++++|.++...|
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g- 248 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQHLG- 248 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 6899999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred ccCChHHhhcCHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 028992 92 LTADLSEAKGDFDK-ASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 92 l~~~~~~a~~~~d~-A~~~fqkAl~l~P~~~~y~kAl 127 (200)
++++ +..+++++++++|+++......
T Consensus 249 ----------~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 249 ----------KPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp ----------CCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 8866 6799999999999999555433
No 112
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5e-12 Score=92.77 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=90.1
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcC
Q 028992 26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGD 102 (200)
Q Consensus 26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~ 102 (200)
..+|.++..+..+|.++...+++ ++|+..|+++++++|++ ..+++++|.+|...| +
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----------~ 80 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDY----------GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-----------D 80 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-----------C
T ss_pred ccchHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-----------c
Confidence 45789999999999999999998 99999999999999998 899999999999998 9
Q ss_pred HHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 103 FDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 103 ~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
+++|+.+|+++++++|++. .|+++++++|+.+.++..+.+...
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999986 778888888888888887776644
No 113
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=6.8e-12 Score=87.96 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
.++.++.+|.++...+++ ++|+..|++++.++|+++.+++++|.++...| ++++|+.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNI----------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-----------DYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc-----------cHHHHHHHH
Confidence 467899999999999998 99999999999999999999999999999988 999999999
Q ss_pred HHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 111 QRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 111 qkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
+++++.+|++. .|+++++++|..+.++..++..
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999875 5566666666666666666543
No 114
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=2.1e-12 Score=117.32 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=88.3
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+.+.|++|++.++++++++|+++.+++++|.++..++++ ++|+..|++|++++|+++.+++++|.+|..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------GYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
+| ++++|+++|++|++++|++.
T Consensus 87 ~g-----------~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 87 LG-----------KFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HT-----------CHHHHHHHHHHHHHHSTTCT
T ss_pred cC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 88 99999999999999999875
No 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.7e-12 Score=113.28 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=111.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|++.++++++.+|+ +.++..+|.++...|++ ++|+..|+++++++|+++.++..+|.+|.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDS----------TEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCC----------TTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 34677899999999999999999 99999999999999999 99999999999999999999999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..| ++++|+.+|+++++.+|++. .|+++++..|..++++..++..+..
T Consensus 316 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 316 ILQ-----------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HTT-----------CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HhC-----------CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 988 99999999999999999875 7888889999999999999998886
Q ss_pred ccc
Q 028992 147 QQT 149 (200)
Q Consensus 147 ~~~ 149 (200)
++-
T Consensus 385 ~~~ 387 (514)
T 2gw1_A 385 KND 387 (514)
T ss_dssp TTC
T ss_pred CCC
Confidence 553
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.37 E-value=3e-12 Score=107.85 Aligned_cols=120 Identities=11% Similarity=0.020 Sum_probs=109.4
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+-+.+.+++|+..++++++.+|+++++++.+|.++...|++ ++|+..|++++.++|+....+..++..+.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~----------~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS----------EDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----------HHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----------HHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999 99999999999999987777777787788
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC--hHHHHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA--PELHMELHKHG 144 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~--~e~~~~l~~~~ 144 (200)
..+ ++++|+..|+++++.+|++. .|+++++.+|+. ++++.+++..+
T Consensus 197 ~~~-----------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 197 XQA-----------ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHH-----------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred hhc-----------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 877 89999999999999999997 788899999998 89999999988
Q ss_pred Hhcc
Q 028992 145 INQQ 148 (200)
Q Consensus 145 ~~~~ 148 (200)
..++
T Consensus 266 ~~~g 269 (287)
T 3qou_A 266 AALG 269 (287)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 7554
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=4.9e-12 Score=106.70 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-------cCCcccccccccHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-------SQFESVSDSKKIINEAISKFEEALV-IDPAKHYTLWSLGN 84 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-------~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~~~a~~~LG~ 84 (200)
.+++|+..+++++..+|+++++|+++|..+... |++. ...+.+++|+..|++|++ ++|++..+|.++|.
T Consensus 31 ~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN---NAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH---HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh---hcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 348999999999999999999999999998754 4420 112234899999999999 79999999999999
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHK 142 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~ 142 (200)
++..+| ++++|..+|+++++++|++. .|+++++..|....+|...+.
T Consensus 108 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 108 YEESRM-----------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred HHHhcC-----------CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999998 99999999999999999863 778888888888888876655
Q ss_pred HH
Q 028992 143 HG 144 (200)
Q Consensus 143 ~~ 144 (200)
..
T Consensus 177 ~~ 178 (308)
T 2ond_A 177 ME 178 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.37 E-value=7.1e-12 Score=85.43 Aligned_cols=83 Identities=30% Similarity=0.490 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
|.++..++.+|.++...+++ ++|+..|+++++++|+++.+++++|.++...| ++++|+.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~ 64 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDEAIE 64 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----------hHHHHHH
Confidence 35788999999999999998 99999999999999999999999999999988 9999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992 109 CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 109 ~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
+|+++++++|++ ++++.+++..+.
T Consensus 65 ~~~~a~~~~p~~-------------~~~~~~l~~~~~ 88 (91)
T 1na3_A 65 YYQKALELDPNN-------------AEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHCTTC-------------HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC-------------HHHHHHHHHHHH
Confidence 999999998866 455566665554
No 119
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=1.6e-11 Score=100.29 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=83.9
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------hcCCcccccccccHHHHHHHHHHHHHhCCCCH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLE--------LSQFESVSDSKKIINEAISKFEEALVIDPAKH 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~--------l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~ 76 (200)
+-+++.|++|++.++++++.+|++ +++++++|.++.. ++++ ++|+..|+++++++|+++
T Consensus 62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT----------RKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH----------HHHHHHHHHHHHHCTTCT
T ss_pred HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH----------HHHHHHHHHHHHHCcCch
Confidence 457789999999999999998854 7789999999999 6666 999999999999999997
Q ss_pred HHH-----------------HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 77 YTL-----------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 77 ~a~-----------------~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.+. +.+|.+|...| ++++|+.+|+++++..|++
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRE-----------LYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCCCC
Confidence 776 88999999999 9999999999999999985
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.34 E-value=7.9e-13 Score=102.74 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
||...+.++.+|.++...|++ ++|+..|+++++++|+++.+++++|.+|...| ++++|+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-----------~~~~A~ 60 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEH----------AQALNVIQTLSDELQSRGDVKLAKADCLLETK-----------QFELAQ 60 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCH----------HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-----------CHHHHH
Confidence 566777899999999999998 99999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 108 ECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 108 ~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
.+|++++..+| +. .|+++++++|+.++++++++..+..++.
T Consensus 61 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 61 ELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp HHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 99999999998 54 6677889999999999999999986654
No 121
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.33 E-value=6.7e-12 Score=100.21 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHhcCcccCChHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-------KHY-----TLWSLGNAHTSCGFLTADLSE 98 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-------~~~-----a~~~LG~a~~~~G~l~~~~~~ 98 (200)
.++.+.+.|.+++..|+| ++|+.+|++||+++|+ ++. +|.|+|.++..+|
T Consensus 10 ~a~~~~~~G~~l~~~g~~----------eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-------- 71 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEY----------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-------- 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--------
Confidence 367789999999999999 9999999999999999 655 9999999999999
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHH----HHHHHHHHhc
Q 028992 99 AKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELH----MELHKHGINQ 147 (200)
Q Consensus 99 a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~----~~l~~~~~~~ 147 (200)
+|++|+.+|.+||++ |.++++++|+.+.+| ++.|..+...
T Consensus 72 ---r~~eAl~~~~kAL~l------~n~~~e~~pd~~~A~~~~~~~rG~aL~~l 115 (159)
T 2hr2_A 72 ---SFDEALHSADKALHY------FNRRGELNQDEGKLWISAVYSRALALDGL 115 (159)
T ss_dssp ---CHHHHHHHHHHHHHH------HHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHh------hhccccCCCchHHHHHHHHHhHHHHHHHC
Confidence 999999999999998 556666666666666 6666666543
No 122
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.32 E-value=8.5e-12 Score=95.21 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCcc
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------------------DPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------------------dP~~~~a~~~LG~a~~~~G~l 92 (200)
.++.+...|..++..|++ ++|+..|++|+++ +|.+..+|.++|.+|..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-- 77 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDY----------KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-- 77 (162)
T ss_dssp HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 467889999999999998 9999999999999 8888899999999999998
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCCh-HHHHHHHHHHH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAP-ELHMELHKHGI 145 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~-e~~~~l~~~~~ 145 (200)
+|++|+.+|++|++++|++. .|+++++++|+.+ .+...|.....
T Consensus 78 ---------~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 78 ---------DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp ---------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999997 8889999999998 66766665543
No 123
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=8.5e-12 Score=108.88 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=85.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+++.+++|++.++++++.+|+++.++.++|.++...|++ ++|+..|+++++++|+++.+++++|.++...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF----------DDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 345566666666666666666666666666666665555 8888888888888888888888888888887
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------------HHHHHHHhCCCChHHHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------------~y~kAle~~~k~~e~~~~ 139 (200)
| ++++|+.+|+++++.+|++. .|++++++.|+.+..+..
T Consensus 386 ~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 386 N-----------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp T-----------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-----------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 7 88888888888888776651 455666777788888888
Q ss_pred HHHHHHhcc
Q 028992 140 LHKHGINQQ 148 (200)
Q Consensus 140 l~~~~~~~~ 148 (200)
++..+..++
T Consensus 455 la~~~~~~g 463 (514)
T 2gw1_A 455 LAQMKLQQE 463 (514)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 887776544
No 124
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.31 E-value=1.1e-11 Score=86.35 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=77.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
++|++++++..+|.++...+++ ++|+..|+++++++|++..+++++|.++...| ++++|
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A 59 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY----------TESIDLFEKAIQLDPEESKYWLMKGKALYNLE-----------RYEEA 59 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------CHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc-----------CHHHH
Confidence 4799999999999999998888 99999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 107 SECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
+.+|+++++.+|+ ...++.+.+++..+..+
T Consensus 60 ~~~~~~a~~~~~~-----------~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 60 VDCYNYVINVIED-----------EYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHHTSCC-----------TTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcc-----------cchHHHHHHHHHHHHHH
Confidence 9999999999887 01345556666655544
No 125
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=6.6e-12 Score=105.52 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=100.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------ 75 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------ 75 (200)
+..++.|++|++.+++++++.+. .+.++.++|.++..+|++ ++|+.+|++|+++.|+.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS----------VNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence 44577899999999999988532 267999999999999998 99999999999998865
Q ss_pred HHHHHHHHHHHHhc-CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHH
Q 028992 76 HYTLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSL 127 (200)
Q Consensus 76 ~~a~~~LG~a~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAl 127 (200)
..++.++|.+|... | ++++|+.+|++|+++.|++. .|++++
T Consensus 117 a~~~~~lg~~~~~~lg-----------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 185 (292)
T 1qqe_A 117 ANFKFELGEILENDLH-----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (292)
T ss_dssp HHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56889999999995 9 99999999999999988541 677888
Q ss_pred HhCCCChH-------HHHHHHHHHHhcc
Q 028992 128 EVSTKAPE-------LHMELHKHGINQQ 148 (200)
Q Consensus 128 e~~~k~~e-------~~~~l~~~~~~~~ 148 (200)
++.|+.+. .+.+++..+..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g 213 (292)
T 1qqe_A 186 KSSMGNRLSQWSLKDYFLKKGLCQLAAT 213 (292)
T ss_dssp HTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence 88877654 5677777776544
No 126
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.1e-11 Score=87.35 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
+++.+.++|.++...|++ ++|+..|+++++++|+++.+++++|.+|..+| ++++|+.+|
T Consensus 3 ~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLY----------REAVHCYDQLITAQPQNPVGYSNKAMALIKLG-----------EYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-----------CHHHHHHHH
Confidence 578899999999999998 99999999999999999999999999999999 999999999
Q ss_pred HHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 111 QRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 111 qkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
+++++++|++..... .+.++..++..+...+
T Consensus 62 ~~al~~~p~~~~~~~-------~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAI-------RSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHTSCSSTTSHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHH-------HHHHHHHHHHHHHHHH
Confidence 999999998721111 1456677777666544
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.29 E-value=9.2e-11 Score=87.52 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
.++.+..+|.++...+++ ++|+..|+++++++|+++.+++++|.++...| ++++|+.+|
T Consensus 12 ~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~ 70 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDY----------ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDA 70 (166)
T ss_dssp HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence 367889999999999998 99999999999999999999999999999988 999999999
Q ss_pred HHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 111 QRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 111 qkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
+++++++|++. .|+++++++|+.+..+..++..
T Consensus 71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999986 7777888888888877555543
No 128
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=4e-12 Score=106.85 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=80.6
Q ss_pred HHH-hchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---
Q 028992 8 FDR-LLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY--- 77 (200)
Q Consensus 8 ~~~-l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~--- 77 (200)
+.+ ++.+++|++.+++++++.|.+ +.++.++|.++..+|++ ++|+..|+++++++|++..
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY----------IEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcCCcccH
Confidence 345 489999999999999999875 67899999999999998 9999999999999998764
Q ss_pred ----HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 78 ----TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 78 ----a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
++.++|.+|..+| ++++|+.+|+++++++|++..
T Consensus 197 ~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAAT-----------DAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp GHHHHHHHHHHHHHHTT-----------CHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCCC
Confidence 6789999999999 999999999999999998763
No 129
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=2e-12 Score=91.20 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=76.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HYTLWS 81 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~a~~~ 81 (200)
+-+.+.|++|++.++++++++|+++.+++++|.++..+|++ ++|+..|+++++++|++ ..+++.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY----------TQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999 99999999999999999 999999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
+|.++..+| ++++|+..|++
T Consensus 84 ~~~~~~~~~-----------~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVG-----------SVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHH-----------CCCCCSSSSSS
T ss_pred HHHHHHHHH-----------hHhhhHhHHHH
Confidence 999999988 66666655544
No 130
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.25 E-value=3.9e-11 Score=86.77 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
+|+|++.+..+|.++...++. .+.++|...|++||++||+++.+++.+|++++..| +|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g-----------~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF-----------RFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC-----------CHHHHH
Confidence 799999999999999876552 12299999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCC
Q 028992 108 ECFQRAVDEEPTN 120 (200)
Q Consensus 108 ~~fqkAl~l~P~~ 120 (200)
.+|+++++.+|.+
T Consensus 64 ~~w~~~l~~~p~~ 76 (93)
T 3bee_A 64 DTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHTCCCTT
T ss_pred HHHHHHHhhCCCC
Confidence 9999999999984
No 131
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.25 E-value=9.3e-12 Score=87.12 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDAD-NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~-~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
+-+.+.|++|++.++++++.+|+++. +++++|.++..++++ ++|+..|+++++++|+++.++.+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW----------QKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 45667888888888888888888888 888888888888887 88888888888888888887644
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+ .+.+|+.+|++++..+|++
T Consensus 75 ---~-----------~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ---K-----------MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---H-----------HHHHHHHHHCCTTHHHHCC
T ss_pred ---H-----------HHHHHHHHHHHHhccCccc
Confidence 3 6777888888888887765
No 132
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=5.5e-11 Score=84.71 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
|..++.++.+|.++...+++ ++|+..|+++++++|+++.+++++|.+|...| ++++|+.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~ 59 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDF----------DTALKHYDKAKELDPTNMTYITNQAAVYFEKG-----------DYNKCRE 59 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-----------cHHHHHH
Confidence 34578899999999999998 99999999999999999999999999999988 9999999
Q ss_pred HHHHHHHhCCCC
Q 028992 109 CFQRAVDEEPTN 120 (200)
Q Consensus 109 ~fqkAl~l~P~~ 120 (200)
+|+++++.+|++
T Consensus 60 ~~~~~~~~~~~~ 71 (131)
T 1elr_A 60 LCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHhhcccc
Confidence 999999998865
No 133
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.23 E-value=9.7e-11 Score=84.67 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (200)
Q Consensus 33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~ 109 (200)
+.++.+|.++...|++ ++|+..|+++++.+|+++ .+++.+|.+|...| ++++|+.+
T Consensus 3 ~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKY----------DDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-----------NFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-----------cHHHHHHH
Confidence 4578999999999998 999999999999999999 89999999999999 99999999
Q ss_pred HHHHHHhCCCC
Q 028992 110 FQRAVDEEPTN 120 (200)
Q Consensus 110 fqkAl~l~P~~ 120 (200)
|+++++.+|++
T Consensus 62 ~~~~~~~~p~~ 72 (129)
T 2xev_A 62 FRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHCTTS
T ss_pred HHHHHHHCCCC
Confidence 99999999998
No 134
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=6.3e-11 Score=95.53 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=85.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCC--------cccccccccHHHHHHHHHHHHHhCCCCH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQF--------ESVSDSKKIINEAISKFEEALVIDPAKH 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~---~l~~lG~al~~l~~~--------~~~~~~~~~~~eAi~~le~AL~ldP~~~ 76 (200)
+.+++.|++|++.++++++.+|+++. +++++|.++..++.. .......+.+++|+..|+++++.+|+++
T Consensus 51 ~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 51 YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 45678999999999999999999875 899999999875421 0011123566999999999999999998
Q ss_pred HHH-----------------HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 77 YTL-----------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 77 ~a~-----------------~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
.+. +.+|.+|...| ++++|+.+|+++++..|+++.
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERG-----------AWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHCcCCCc
Confidence 665 67888899988 999999999999999999864
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.21 E-value=2e-10 Score=82.36 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=83.8
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
..|.++..+..+|.++...+++ ++|+..|+++++++|++..+++++|.+|...| ++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-----------~~~~A 69 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDY----------PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-----------EFQLA 69 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT-----------CHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc-----------cHHHH
Confidence 3578899999999999999999 99999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 107 SECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
+.+|+++++.+|++. .|+++++++|..++++..++..+.
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999875 455555555555566655555554
No 136
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.8e-11 Score=96.72 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 028992 12 LLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------DPAKHYTLWSL 82 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------dP~~~~a~~~L 82 (200)
..|++|++.+++.+..+ |..+.++..+|.++...|++ ++|+..|++++++ +|....++.++
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY----------KEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45666666666665444 78899999999999999998 9999999999988 57778899999
Q ss_pred HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh--------CCCCH---------------------HHHHHHHh----
Q 028992 83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE--------EPTNE---------------------LYQKSLEV---- 129 (200)
Q Consensus 83 G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l--------~P~~~---------------------~y~kAle~---- 129 (200)
|.+|...| ++++|+.+|++++++ +|... .|++++++
T Consensus 92 ~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 92 AVLYGKRG-----------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999 999999999999998 34332 77788887
Q ss_pred ----CCCChHHHHHHHHHHHhcc
Q 028992 130 ----STKAPELHMELHKHGINQQ 148 (200)
Q Consensus 130 ----~~k~~e~~~~l~~~~~~~~ 148 (200)
.|....++.+++..+..++
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcC
Confidence 6666788889998876554
No 137
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.20 E-value=1.4e-10 Score=78.94 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=68.6
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
+.+++.|++|++.++++++.+|+++.+++++|.++...+++ ++|+..|+++++++|+++.++.++|.++.
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999998
Q ss_pred hcC
Q 028992 88 SCG 90 (200)
Q Consensus 88 ~~G 90 (200)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 754
No 138
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=4.3e-11 Score=95.64 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=80.9
Q ss_pred HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------
Q 028992 8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------- 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------- 71 (200)
+-.++.|++|++.++++++. +|..+.++.++|.++..+|++ ++|+..|++++++
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY----------KEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHHcCCC
Confidence 34677899999999999987 577888999999999999998 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+|....++.++|.+|...| ++++|+.+|++++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQG-----------KAEEVEYYYRRALEI 156 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 6888899999999999999 999999999999999
No 139
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.17 E-value=2.7e-10 Score=79.56 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
.++.|.++...+++ ++|+..|+++++++|+++. +++++|.+|..+| ++++|+.+|+++
T Consensus 3 ~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~a 61 (99)
T 2kc7_A 3 QLKTIKELINQGDI----------ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-----------DWQKALNNYQSA 61 (99)
T ss_dssp THHHHHHHHHHTCH----------HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHH
Confidence 35789999999888 9999999999999999999 9999999999988 999999999999
Q ss_pred HHhCCCCHH
Q 028992 114 VDEEPTNEL 122 (200)
Q Consensus 114 l~l~P~~~~ 122 (200)
++++|++..
T Consensus 62 l~~~p~~~~ 70 (99)
T 2kc7_A 62 IELNPDSPA 70 (99)
T ss_dssp HHHCTTSTH
T ss_pred HhcCCCcHH
Confidence 999999863
No 140
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=1.6e-10 Score=104.23 Aligned_cols=113 Identities=9% Similarity=0.071 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCcc
Q 028992 15 EHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGFL 92 (200)
Q Consensus 15 e~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-~a~~~LG~a~~~~G~l 92 (200)
++|++.++++++ .+|+++.+|..+|..+...|++ ++|+..|+++++++|+++ .+|.++|.++..+|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-- 370 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKY----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-- 370 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhc--
Confidence 389999999997 8999999999999999998888 999999999999999996 68999999999888
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
++++|..+|++|++..|.+. .|+++++..|+.++++.+++..+..++
T Consensus 371 ---------~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 371 ---------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp ---------HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred ---------CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999877642 677888999999999999998876544
No 141
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.17 E-value=7e-11 Score=94.22 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 54 SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 54 ~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..+++++|+.++++|++++|+++++|.++|.++..+|.+.+. .++++.+++|+.+|++||+++|++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g-~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI-SDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh-hhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 345679999999999999999999999999999998733222 2245567899999999999999875
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.16 E-value=6.6e-11 Score=99.47 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
|.+++.+..+|.++...|++ ++|+..|++|++++|+++.+++++|.+|..+| ++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKY----------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHH
Confidence 77899999999999999998 99999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhCCCCH
Q 028992 109 CFQRAVDEEPTNE 121 (200)
Q Consensus 109 ~fqkAl~l~P~~~ 121 (200)
+|++|++++|++.
T Consensus 60 ~~~~al~~~p~~~ 72 (281)
T 2c2l_A 60 DCRRALELDGQSV 72 (281)
T ss_dssp HHHHHTTSCTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 9999999999986
No 143
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=1.9e-10 Score=93.53 Aligned_cols=120 Identities=19% Similarity=0.223 Sum_probs=102.5
Q ss_pred HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------
Q 028992 8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------- 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------- 71 (200)
+-+.+.+++|++.+++++++ +|..+.++..+|.++...|++ ++|+..|++++++
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY----------KDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCC
Confidence 45677899999999999995 788899999999999999998 9999999999988
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC-----CCCH------------------------H
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE-----PTNE------------------------L 122 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~-----P~~~------------------------~ 122 (200)
+|....+++++|.+|...| ++++|+.+|++++++. +++. .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5777889999999999998 9999999999999984 3332 6
Q ss_pred HHHHHHh--------CCCChHHHHHHHHHHHhcc
Q 028992 123 YQKSLEV--------STKAPELHMELHKHGINQQ 148 (200)
Q Consensus 123 y~kAle~--------~~k~~e~~~~l~~~~~~~~ 148 (200)
|++++++ .+..+.++.+++..+..++
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 209 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7777777 5666778888888776554
No 144
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=2e-10 Score=91.13 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcC
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-P-AKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-P-~~~~a~~~LG~a~~~~G 90 (200)
....+++.|++.+..+|.+.++.+++|.+|....+ ..+++++|..|++.++.+ | ++.+++|+||.+|+..|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 45677888888899999999999999999998553 245589999999999999 8 67899999999999999
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA 126 (200)
+|++|.+|++++++.+|+|..-+..
T Consensus 86 -----------~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 86 -----------EYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999754433
No 145
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=1.9e-09 Score=87.98 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE----LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~----l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
.+.+.+++|++.++++++ |+++.+++++|.++.. .+++ ++|+..|++|++++ ++.++++||.
T Consensus 17 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~--~~~a~~~lg~ 82 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNL----------KKAASFYAKACDLN--YSNGCHLLGN 82 (273)
T ss_dssp HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCH----------HHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 345567777777777776 6677777777777776 5555 66666666666664 5666666666
Q ss_pred HHHh----cCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 85 AHTS----CGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 85 a~~~----~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+|.. .+ ++++|+.+|++|++.
T Consensus 83 ~~~~g~~~~~-----------~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 83 LYYSGQGVSQ-----------NTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHTSSSCC-----------CHHHHHHHHHHHHHT
T ss_pred HHhCCCCccc-----------CHHHHHHHHHHHHHc
Confidence 6665 55 555566655555554
No 146
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=97.58 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=82.1
Q ss_pred HHHhchHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------
Q 028992 8 FDRLLLSEHNRKTAEANYAKD--------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------- 71 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~--------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------- 71 (200)
+.+++.+++|++.+++++++. |....++.++|.++...+++ ++|+..|++++++
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY----------EEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHhCCC
Confidence 345778999999999999874 77788999999999999988 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
+|....+++++|.+|...| ++++|+.+|+++++..|.
T Consensus 191 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQG-----------KFKQAETLYKEILTRAHE 227 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHH
Confidence 8888899999999999988 999999999999987554
No 147
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.10 E-value=2.5e-09 Score=87.28 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=85.1
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE----LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~----l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
.+.+++|++.++++++.+ ++++++++|.++.. .+++ ++|+..|++|++++ ++.++++||.+|
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~--~~~a~~~lg~~~ 120 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT----------NKALQYYSKACDLK--YAEGCASLGGIY 120 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH----------HHHHHHHHHHHHcC--CccHHHHHHHHH
Confidence 677888999999888875 78889999998887 6665 88888888888874 788888888888
Q ss_pred Hh----cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHH
Q 028992 87 TS----CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 87 ~~----~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~ 139 (200)
.. .+ ++++|+.+|++|++.++... .|+++++. ..+..+.+
T Consensus 121 ~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 187 (273)
T 1ouv_A 121 HDGKVVTR-----------DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFN 187 (273)
T ss_dssp HHCSSSCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HcCCCccc-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 87 77 88888888888888764332 45555555 45777888
Q ss_pred HHHHHHh
Q 028992 140 LHKHGIN 146 (200)
Q Consensus 140 l~~~~~~ 146 (200)
++..+..
T Consensus 188 lg~~~~~ 194 (273)
T 1ouv_A 188 AGNMYHH 194 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877765
No 148
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.09 E-value=6.6e-10 Score=100.15 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------hcCCcccccccccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLE-------LSQFESVSDSKKIINEAISKFEEALV-IDPAKHYTLWSLGNAH 86 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~-------l~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~~~a~~~LG~a~ 86 (200)
+.++..+++++..+|+++++|+++|..+.. .|++..+ ....++|+..|++|++ ++|+++.+|..+|.++
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a---~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA---KLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH---HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh---hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 467789999999999999999999999986 5666000 0001299999999997 8999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
...| ++++|..+|+++++.+|++. .|++|++..|..+..+...+..
T Consensus 332 ~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 332 ESRM-----------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred HhcC-----------CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 9988 99999999999999999873 5667777777766666554433
No 149
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=1.5e-10 Score=99.52 Aligned_cols=120 Identities=10% Similarity=0.020 Sum_probs=100.1
Q ss_pred HHhchHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-------
Q 028992 9 DRLLLSEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------- 75 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------- 75 (200)
-+.+.|++|++.+++++.+ ++..+.+++++|.++..+|++ ++|+..+++|+++.++.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT----------YFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhCccchHHH
Confidence 4567899999999999987 334678999999999999998 99999999999995544
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHH
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLE 128 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle 128 (200)
..++.++|.+|..+| ++++|+.+|++|+++.|... .|+++++
T Consensus 184 ~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 184 LQCHSLFATNFLDLK-----------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 458999999999999 99999999999998855321 6778887
Q ss_pred -----hC-CCChHHHHHHHHHHHhccc
Q 028992 129 -----VS-TKAPELHMELHKHGINQQT 149 (200)
Q Consensus 129 -----~~-~k~~e~~~~l~~~~~~~~~ 149 (200)
.+ |..+.++.+++..+..++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 34 6677889999998876553
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.08 E-value=5.2e-10 Score=98.53 Aligned_cols=96 Identities=19% Similarity=0.364 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHhcCcccCC
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV----------------IDPAKHYTLWSLGNAHTSCGFLTAD 95 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~----------------ldP~~~~a~~~LG~a~~~~G~l~~~ 95 (200)
+..+..+|.+++..+++ ++|+.+|++|++ ++|.+..+|.++|.+|..+|
T Consensus 223 a~~~~~~g~~~~~~g~~----------~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g----- 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNW----------EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS----- 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 56688999999999998 999999999999 89999999999999999999
Q ss_pred hHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 96 LSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 96 ~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
++++|+.+|++|++++|++. .|+++++++|+.++++..++.....++
T Consensus 288 ------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 288 ------DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp ------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987 788999999999999999988776443
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=1.7e-09 Score=100.72 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
+-++|++.+++++..||++.++|+..+.++..+++..........+++++..++++++++|++..+|+..|.++..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~-- 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP-- 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS--
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--
Confidence 446889999999999999999999999999998872111111223599999999999999999999999999999977
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
..++++|++++.+++++||.|. .+.++++.+|....+|...+..+...
T Consensus 122 -------~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 122 -------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp -------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred -------cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 3356999999999999999996 34667788999999999999887653
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.07 E-value=9.4e-11 Score=85.19 Aligned_cols=71 Identities=17% Similarity=0.323 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------
Q 028992 57 IINEAISKFEEALVI---DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------ 121 (200)
Q Consensus 57 ~~~eAi~~le~AL~l---dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------ 121 (200)
.+++|+..|++|+++ +|+++.++++||.+|..+| ++++|+.+|+++++++|++.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-----------EYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 349999999999999 6999999999999999999 99999999999999999986
Q ss_pred ---------HHHHHHHhCCCChHHHH
Q 028992 122 ---------LYQKSLEVSTKAPELHM 138 (200)
Q Consensus 122 ---------~y~kAle~~~k~~e~~~ 138 (200)
.|+++++..|+.+++..
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 56666666666666543
No 153
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=1.5e-09 Score=94.24 Aligned_cols=117 Identities=10% Similarity=-0.018 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELS--QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH---- 86 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~--~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~---- 86 (200)
+-++|++.+++++.+||++.++|+..|.++..++ ++ ++++..++++|.++|++..+|...+.++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~----------~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNL----------YDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCH----------HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccH----------HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999887 55 9999999999999999999999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
...+ ..+++++++.++.++++.+|.|. .+.++++.+|+.-.++...+..
T Consensus 118 ~~l~--------~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 118 ELNN--------NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHTT--------TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred Hhcc--------ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5551 01388999999999999999886 4667777888888888877776
Q ss_pred HHhc
Q 028992 144 GINQ 147 (200)
Q Consensus 144 ~~~~ 147 (200)
+...
T Consensus 190 l~~l 193 (306)
T 3dra_A 190 LFSK 193 (306)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6544
No 154
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.05 E-value=5.5e-10 Score=95.41 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=81.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDA----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKHY 77 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~~ 77 (200)
+-+.+.|++|++.++++++++|+++ .++..+|.++..+|++ ++|+..|++++++ +|....
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY----------NKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHccCchHHHH
Confidence 4566799999999999999999998 5899999999999998 9999999999999 788889
Q ss_pred HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+++++|.+|...| ++++|+.+|++++++
T Consensus 128 ~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 128 SSGNLGNTLKVMG-----------RFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence 9999999999998 999999999999988
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=4.8e-09 Score=91.12 Aligned_cols=121 Identities=10% Similarity=-0.049 Sum_probs=103.5
Q ss_pred HHhc--hHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 9 DRLL--LSEHNRKTAEANYAKDPLDADNLTRWGEAL----LELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSL 82 (200)
Q Consensus 9 ~~l~--~fe~A~~~~e~a~~~~P~d~~~l~~lG~al----~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~L 82 (200)
..++ .++++++.++.++..||.+.++|+..+.++ ..++. .+.+++++..+++++++||++..+|...
T Consensus 78 ~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-------~~~~~~EL~~~~~~l~~~pkny~aW~~R 150 (306)
T 3dra_A 78 KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-------DFDPYREFDILEAMLSSDPKNHHVWSYR 150 (306)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-------CCCTHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3455 899999999999999999999999999999 55411 0223999999999999999999999999
Q ss_pred HHHHHhcCcccCChHHhhcCHH--HHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCC
Q 028992 83 GNAHTSCGFLTADLSEAKGDFD--KASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKA 133 (200)
Q Consensus 83 G~a~~~~G~l~~~~~~a~~~~d--~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~ 133 (200)
|.++..+| .++ +++++++++++.||.|. .+.++++.+|..
T Consensus 151 ~~vl~~l~-----------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 151 KWLVDTFD-----------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp HHHHHHTT-----------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHhc-----------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 99999988 777 99999999999999996 345667889999
Q ss_pred hHHHHHHHHHHHhc
Q 028992 134 PELHMELHKHGINQ 147 (200)
Q Consensus 134 ~e~~~~l~~~~~~~ 147 (200)
..++..++..+...
T Consensus 220 ~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 220 PSTWNYLLGIHERF 233 (306)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhc
Confidence 99998888776543
No 156
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=1.5e-09 Score=87.20 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=89.8
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.+.+.+++|++.++++.+. +++++++++|.++.. +. ....+++|+..|++|+ ++.++.++++||.+|..
T Consensus 29 ~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g------~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 29 VSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP------QQADYPQARQLAEKAV--EAGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST------TSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTC
T ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC------CCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHc
Confidence 3457889999999998764 689999999999876 41 1224499999999994 56899999999999876
Q ss_pred ----cCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CH-------------------------HHHHHHHhCCCChHHH
Q 028992 89 ----CGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE-------------------------LYQKSLEVSTKAPELH 137 (200)
Q Consensus 89 ----~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~-------------------------~y~kAle~~~k~~e~~ 137 (200)
.+ ++++|+.+|++|++.+|. +. .|++++++ +..+.++
T Consensus 98 g~g~~~-----------d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 98 RQAGAT-----------DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp GGGSSC-----------CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred CCCCcc-----------CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 44 999999999999999883 11 56666666 5677788
Q ss_pred HHHHHHHHhc
Q 028992 138 MELHKHGINQ 147 (200)
Q Consensus 138 ~~l~~~~~~~ 147 (200)
++|+..+...
T Consensus 166 ~~Lg~~y~~g 175 (212)
T 3rjv_A 166 YWAGMMFQQG 175 (212)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 8888877643
No 157
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=4.9e-09 Score=87.44 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=93.0
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HY 77 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~ 77 (200)
+.+.|++|++.++++++..|.... .++.+|.++...+++ ++|+..|++|+++.++. ..
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY----------EYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCH----------HHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHHhcCCchHHHHH
Confidence 556899999999999999887664 355677777776677 99999999999987665 67
Q ss_pred HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH---HhCCCCH-------------------------HHHHHHHh
Q 028992 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV---DEEPTNE-------------------------LYQKSLEV 129 (200)
Q Consensus 78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl---~l~P~~~-------------------------~y~kAle~ 129 (200)
++.++|.+|..+| ++++|+.+|++|+ +..|++. .|++++++
T Consensus 157 ~~~~lg~~y~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 157 IENAIANIYAENG-----------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8999999999999 9999999999999 6667643 56666665
Q ss_pred CCC------ChHHHHHHHHHHHhcc
Q 028992 130 STK------APELHMELHKHGINQQ 148 (200)
Q Consensus 130 ~~k------~~e~~~~l~~~~~~~~ 148 (200)
.++ ...+|.++|..+..++
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 432 2667777887776554
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.02 E-value=1.3e-10 Score=105.39 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=82.1
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA-- 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a-- 85 (200)
+.+++.|++|++.++++++++|+++.+++++|.++..+|++ ++|+..|++|++++|++..++.++|.+
T Consensus 50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhcCcccCChHHhhcCHHHHHHHHH-----------HHHHhCCCCH
Q 028992 86 HTSCGFLTADLSEAKGDFDKASECFQ-----------RAVDEEPTNE 121 (200)
Q Consensus 86 ~~~~G~l~~~~~~a~~~~d~A~~~fq-----------kAl~l~P~~~ 121 (200)
+..+| ++++|+++++ ++++++|++.
T Consensus 120 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 120 IVKQK-----------AFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHH-----------HHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHH-----------HHHHHhccccccchhHhhhhhhhcccccccc
Confidence 77766 9999999999 9999988864
No 159
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=4.7e-09 Score=97.79 Aligned_cols=115 Identities=9% Similarity=-0.105 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.++++++.++++++.+|.+..+|+..+.++..+++. .++++++.+++++++||++..+|...|.++...|
T Consensus 88 ~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~--------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~-- 157 (567)
T 1dce_A 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP--------NWARELELCARFLEADERNFHCWDYRRFVAAQAA-- 157 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc--------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC--
Confidence 399999999999999999999999999999988722 2399999999999999999999999999998866
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------------------HHHHHHHhCCCChHHH
Q 028992 93 TADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------------LYQKSLEVSTKAPELH 137 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------------------~y~kAle~~~k~~e~~ 137 (200)
..+++++++++++++.+|.|. .|.+|++++|+...+|
T Consensus 158 --------~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 158 --------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp --------CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred --------CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 268999999999999999986 2346778899999999
Q ss_pred HHHHHHHH
Q 028992 138 MELHKHGI 145 (200)
Q Consensus 138 ~~l~~~~~ 145 (200)
..++-.+.
T Consensus 230 ~y~~~ll~ 237 (567)
T 1dce_A 230 FYHRWLLG 237 (567)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 88776654
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.99 E-value=2e-10 Score=99.36 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
-+++.|++|++.++++++++|+++.+++++|.+|..++++ ++|+..|++|++++|++..++.+|+.+...
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~----------~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM----------DSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999998 999999999999999999999999998544
Q ss_pred -cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 89 -CGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 89 -~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
.+ +.+++...|++++..+|++..
T Consensus 311 ~~~-----------~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKA-----------LYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------------
T ss_pred HHH-----------HHHHHHHHHHHhhCCCCCCCC
Confidence 34 889999999999999998763
No 161
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=6e-10 Score=94.09 Aligned_cols=90 Identities=20% Similarity=0.183 Sum_probs=67.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------ 75 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------ 75 (200)
+.+++.|++|++.+++++++.+.. +.++.++|.++..+|++ ++|+.+|++|+++.+..
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM----------PEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG----------GGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence 455678899999999999887543 56889999999999888 77777777777774321
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..++.++|.+|.. | ++++|+.+|++|+++.|.
T Consensus 116 a~~~~~lg~~~~~-g-----------~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 116 AMALDRAGKLMEP-L-----------DLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp HHHHHHHHHHHTT-T-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-----------CHHHHHHHHHHHHHHHHh
Confidence 3566677777766 7 777777777777776654
No 162
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=8.8e-10 Score=94.65 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=77.3
Q ss_pred HHHhchHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----
Q 028992 8 FDRLLLSEHNRKTAEANYAKDP-------LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---- 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P-------~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---- 76 (200)
+-+++.+++|++.+++++++.+ ..+.++.++|.++..+|++ ++|+..|++|+++.|+..
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY----------EDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHHHcCChHH
Confidence 3467789999999999998844 3456899999999999999 999999999999976554
Q ss_pred --HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 77 --YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 77 --~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.++.++|.+|..+| ++++|+.+|++|+++
T Consensus 223 ~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQS-----------QYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence 48999999999999 999999999999994
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=8.9e-09 Score=90.63 Aligned_cols=125 Identities=12% Similarity=0.013 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~ 93 (200)
-++|++.++.++.+||.+.++|+..+.++..++......+....+++++.+++.+|.++|++..+|...+.++..+|
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~--- 122 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--- 122 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS---
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC---
Confidence 35789999999999999999999999999887652111122334699999999999999999999999999999987
Q ss_pred CChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 94 ADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
...+++++.++.++++.+|.|. .+.++++.+|....++.+.+..+...
T Consensus 123 ------~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 123 ------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp ------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 2248999999999999999997 56778889999999999999877643
No 164
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.98 E-value=1.5e-09 Score=88.12 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=83.4
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLD----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKH 76 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d----~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~ 76 (200)
-+-+.+.|++|+..++++++.+|++ +.++..+|.++...|++ ++|+..|++++++ .|...
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY----------AKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhcccccHHHH
Confidence 3457789999999999999999999 47888999999999998 9999999999988 66778
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.++..+|.+|...| ++++|+.+|++++++.|..
T Consensus 84 ~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 84 KASGNLGNTLKVLG-----------NFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHHh
Confidence 89999999999988 9999999999999886543
No 165
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.98 E-value=6.5e-10 Score=93.74 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=92.2
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------H
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------H 76 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~ 76 (200)
-+++.|++|++.+++++++.|...+ ++.++|.++..+|++ ++|+..|++++++.|+. .
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF----------ETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHhCcCchHHH
Confidence 4567888888888888887665544 888888888888888 99999999999998877 7
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHh
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEV 129 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~ 129 (200)
.++.++|.+|...| ++++|+.+|++++++.+... .|++++++
T Consensus 268 ~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78899999999988 99999999999998865431 66666666
Q ss_pred CCCC------hHHHHHHHHHHHhcc
Q 028992 130 STKA------PELHMELHKHGINQQ 148 (200)
Q Consensus 130 ~~k~------~e~~~~l~~~~~~~~ 148 (200)
.++. ..++..++..+...+
T Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 337 SREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchhHHHHHHHHHHHHhh
Confidence 3322 556677776665444
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.96 E-value=6.2e-10 Score=93.86 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------HHHH
Q 028992 14 SEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------TLWS 81 (200)
Q Consensus 14 fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------a~~~ 81 (200)
|++|++.+++++.+ .|..+.++.++|.++..+|++ ++|+..|++++++.|+..+ ++.+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF----------RDAVIAHEQRLLIAKEFGDKAAERRAYSN 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 89999999998876 556677899999999999998 9999999999999877665 8999
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCC-
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKA- 133 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~- 133 (200)
+|.+|...| ++++|+.+|++++++.|... .|++++++.++.
T Consensus 233 la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 233 LGNAYIFLG-----------EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-----------ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 999999998 99999999999999877651 666777765444
Q ss_pred -----hHHHHHHHHHHHhcc
Q 028992 134 -----PELHMELHKHGINQQ 148 (200)
Q Consensus 134 -----~e~~~~l~~~~~~~~ 148 (200)
+.++..++..+..++
T Consensus 302 ~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcC
Confidence 567778887776544
No 167
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=1.3e-09 Score=93.83 Aligned_cols=120 Identities=15% Similarity=0.064 Sum_probs=98.7
Q ss_pred HHhchHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-------C
Q 028992 9 DRLLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-------K 75 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-------~ 75 (200)
-+.+.|++|++.+++++.+. |..+.+++++|.++..+|++ ++|+..+++|+++.++ .
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT----------HVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHHHhCCCchhhH
Confidence 35678999999999999863 34677999999999999998 9999999999998554 2
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CH-------------------------HHHHHHH
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE-------------------------LYQKSLE 128 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~-------------------------~y~kAle 128 (200)
..++.++|.+|..+| ++++|+.+|++|+++.+. +. .|+++++
T Consensus 182 ~~~~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 182 IQSLFVIAGNYDDFK-----------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457889999999999 999999999999987432 11 7778887
Q ss_pred -----hCCCChHHHHHHHHHHHhccc
Q 028992 129 -----VSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 129 -----~~~k~~e~~~~l~~~~~~~~~ 149 (200)
.+|..+.++.+++..+..++-
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~ 276 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQ 276 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCC
Confidence 666778889999988876553
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=1.1e-08 Score=85.25 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=71.4
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNL------TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------ 77 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l------~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------ 77 (200)
+.+.|++|.+.++++++..+.+++.. ..+|.++...+++ ++|+..|++|+++.+...+
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY----------EYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCH----------HHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHHhcccccHHHHHH
Confidence 45689999999999999988887732 2466666665566 9999999999998666444
Q ss_pred HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++.++|.+|..+| ++++|+.+|++|++.
T Consensus 157 ~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 157 IENAIANIYAENG-----------YLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 7899999999999 999999999999963
No 169
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.94 E-value=3.5e-10 Score=96.64 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=102.0
Q ss_pred HHHhchHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCC
Q 028992 8 FDRLLLSEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAK 75 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~ 75 (200)
+.+++.+++|++.+++++++ +|..+.++.++|.++..+|++ ++|+..|++++++ +|..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF----------DEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHhhchHHH
Confidence 34678899999999999988 788899999999999999998 9999999999999 7778
Q ss_pred HHHHHHHHHHHHhcCc------ccCChHHhhcCHHHHHHHHHHHHHhCCCC---H------------------------H
Q 028992 76 HYTLWSLGNAHTSCGF------LTADLSEAKGDFDKASECFQRAVDEEPTN---E------------------------L 122 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~------l~~~~~~a~~~~d~A~~~fqkAl~l~P~~---~------------------------~ 122 (200)
..++.++|.+|...|. +..-..++...+++|+.+|++++++.+.. . .
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8899999999999881 00111222222999999999998874221 1 6
Q ss_pred HHHHHHhCCCChH------HHHHHHHHHHhcc
Q 028992 123 YQKSLEVSTKAPE------LHMELHKHGINQQ 148 (200)
Q Consensus 123 y~kAle~~~k~~e------~~~~l~~~~~~~~ 148 (200)
|++++++.++... .+.+++..+..++
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 7777777665444 7788888777554
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.92 E-value=1.3e-09 Score=79.49 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=86.5
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------H
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDA------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------H 76 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~ 76 (200)
-..+.+++|++.++++++..+... .++.++|.++..+|++ ++|+..|++++++.++. .
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF----------ETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456789999999999998866433 4889999999999998 99999999999987664 6
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQ 147 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~ 147 (200)
.++.++|.++...| ++++|+.+|++++++.+.... .+..+..+.+++..+..+
T Consensus 90 ~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQELKD-------RIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHccc-------hHhHHHHHHHHHHHHHHc
Confidence 78899999999998 999999999999987432210 011144556666655543
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.92 E-value=4.7e-08 Score=86.01 Aligned_cols=152 Identities=10% Similarity=-0.036 Sum_probs=111.0
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
...++++++.++.++..+|.+..+|+..+.++..+++. .+++++.++++++++||++..+|...+.++...|
T Consensus 87 ~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~--------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~ 158 (331)
T 3dss_A 87 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP--------NWARELELCARFLEADERNFHCWDYRRFVAAQAA 158 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 34588999999999999999999999999999987741 2389999999999999999999999999998887
Q ss_pred cccCChHHhhcC-HHHHHHHHHHHHHhCCCCH-----------------------------------HHHHHHHhCCCCh
Q 028992 91 FLTADLSEAKGD-FDKASECFQRAVDEEPTNE-----------------------------------LYQKSLEVSTKAP 134 (200)
Q Consensus 91 ~l~~~~~~a~~~-~d~A~~~fqkAl~l~P~~~-----------------------------------~y~kAle~~~k~~ 134 (200)
. ++++++++.++++.+|.|. .+.+++.++|++.
T Consensus 159 -----------~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 159 -----------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred -----------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 6 6899999999999999987 2234556788888
Q ss_pred HHHHHHHHHHHhccccCCCCCcch-------hhhhcccccchhhhhhhHHHHHHHHH
Q 028992 135 ELHMELHKHGINQQTLGGGSSASS-------AQSSKKKSSDLKYDIFGWAILAVGIV 184 (200)
Q Consensus 135 e~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~y~~~g~~~l~~~~~ 184 (200)
.++.-+.-.+....+. ...+.. ....-+...+.-.|. -|++++.++.
T Consensus 228 SaW~Y~r~ll~~~~~~--~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~ 281 (331)
T 3dss_A 228 SAWFYHRWLLGAGSGR--CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILL 281 (331)
T ss_dssp HHHHHHHHHHHSSSCG--GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc--cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHH
Confidence 8886555444422211 101100 111223344444554 6888887654
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=1.9e-09 Score=90.97 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH------HHH
Q 028992 12 LLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH------YTL 79 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~------~a~ 79 (200)
+.+++|++.+++++++.|.+ +.++.++|.++..+|++ ++|+..|++++++.|++. .++
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF----------DEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 67888888888888887754 67788888888888888 888888888888876543 467
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.++|.++..+| ++++|+.+|++++ ++|++.
T Consensus 199 ~~~g~~~~~~g-----------~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 199 IAQVLVQLHRA-----------DYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHTT-----------CHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHh-CCCCCC
Confidence 78888888877 8999999999988 888764
No 173
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.91 E-value=4.3e-09 Score=75.54 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++|+..|+++++++|+++.+++++|.+|...| ++++|+.+|+++++++|++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 53 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-----------QFDAALPHLRAALDFDPTYS 53 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCCCcH
Confidence 57899999999999999999999999999998 99999999999999999875
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.91 E-value=2e-08 Score=89.06 Aligned_cols=119 Identities=11% Similarity=-0.017 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c-CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLEL-S-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
++++++.++.++..+|.+..+|+..+.++..+ + ++ +++++.++++|++||++..+|...+.++..+|.
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~----------~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP----------VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC----------HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 44555555555555555555555555555444 3 33 566666666666666666666666666655551
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTKAPELHMELHKH 143 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------------~y~kAle~~~k~~e~~~~l~~~ 143 (200)
..+. ....+++++++++++++.+|.|. .+.++++++|++..++..+...
T Consensus 175 ~~~~---~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 175 LGRI---SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF 251 (349)
T ss_dssp TTCC---CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccc---chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1100 00113399999999999999986 4556678899999999887765
Q ss_pred HH
Q 028992 144 GI 145 (200)
Q Consensus 144 ~~ 145 (200)
+.
T Consensus 252 l~ 253 (349)
T 3q7a_A 252 LK 253 (349)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 175
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=2.1e-08 Score=83.52 Aligned_cols=89 Identities=9% Similarity=-0.028 Sum_probs=78.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH---HhCCCCH----
Q 028992 10 RLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL---VIDPAKH---- 76 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL---~ldP~~~---- 76 (200)
..+.+++|++.++++++..+.. ..+++++|.++..+|++ ++|+..|++|+ +..|++.
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL----------KKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhcCccccchH
Confidence 3458999999999999876654 67999999999999998 99999999999 5577754
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
.+++++|.+|..+| +|++|+.+|++|+++.++
T Consensus 197 ~~~~nlg~~y~~~~-----------~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 197 KVRYNHAKALYLDS-----------RYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHHHHh
Confidence 68999999999999 999999999999998654
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=1.6e-08 Score=77.74 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=70.0
Q ss_pred hchHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH------hCCCCHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV------IDPAKHYTLWSLG 83 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~------ldP~~~~a~~~LG 83 (200)
.+.|++|++.++.... +| ..+.++..+|.++...|++ ++|+..|+++++ ..|....+++++|
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRF----------DEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4678888885544433 55 7889999999999999988 999999999999 5666778899999
Q ss_pred HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.+|...| ++++|+.+|++++++
T Consensus 74 ~~~~~~g-----------~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 74 MVERMAG-----------NWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 9999988 999999999999988
No 177
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=4.3e-09 Score=87.74 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=76.8
Q ss_pred HHHhchHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-----
Q 028992 8 FDRLLLSEHNRKTAEANYA-------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK----- 75 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~-------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~----- 75 (200)
+.+++.|++|++.++++++ ..+..+.+++++|.++..++++ ++|+..+++|+++.++.
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y----------~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY----------EESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHcCcHHH
Confidence 4567789999999999994 2334556889999999999999 99999999999997665
Q ss_pred -HHHHHHHHHHHHhcCcccCChHHhhcC-HHHHHHHHHHHHHhC
Q 028992 76 -HYTLWSLGNAHTSCGFLTADLSEAKGD-FDKASECFQRAVDEE 117 (200)
Q Consensus 76 -~~a~~~LG~a~~~~G~l~~~~~~a~~~-~d~A~~~fqkAl~l~ 117 (200)
..+++++|.+|..+| + +++|+.+|++|+.+.
T Consensus 235 ~~~~~~~lg~~~~~~g-----------~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLE-----------YEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHH
Confidence 889999999999988 6 699999999999763
No 178
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.86 E-value=7.7e-09 Score=88.93 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDP------LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKH 76 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P------~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~ 76 (200)
+.+++.|++|++.+++++++.+ ..+.++.++|.++..+|++ ++|+..|++|++ .+|..+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD----------QMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhhCChhHH
Confidence 4567899999999999998643 2356889999999999998 999999999999 899999
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
.+++++|.+|..+| ++++|+.+|++++++.+.
T Consensus 262 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 262 KVLFGLSWTLCKAG-----------QTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999998554
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=2.4e-08 Score=88.50 Aligned_cols=119 Identities=12% Similarity=-0.015 Sum_probs=103.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
+..+.++|++.+++++.+||.+.++|+..+.++..++. + ++++..++++|.++|++..+|...+.++..
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l----------~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSL----------EDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33466899999999999999999999999999999874 5 999999999999999999999999999987
Q ss_pred c-CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------------HHHHHHHhCCCChHHHH
Q 028992 89 C-GFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------LYQKSLEVSTKAPELHM 138 (200)
Q Consensus 89 ~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------------~y~kAle~~~k~~e~~~ 138 (200)
+ + .+++++++++.++++.+|.|. .+.++++.+|....++.
T Consensus 136 l~~----------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 136 ISP----------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HCC----------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5 3 157899999999999999986 34566788888888888
Q ss_pred HHHHHHHhcc
Q 028992 139 ELHKHGINQQ 148 (200)
Q Consensus 139 ~l~~~~~~~~ 148 (200)
+.+..+....
T Consensus 206 ~R~~lL~~l~ 215 (349)
T 3q7a_A 206 WRWYLRVSRP 215 (349)
T ss_dssp HHHHHHTTST
T ss_pred HHHHHHHhcc
Confidence 8887776543
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=9.4e-09 Score=88.75 Aligned_cols=72 Identities=24% Similarity=0.206 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--P~-~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
+++++|.++..+|++ ++|+..|++++.-+ |. .+++++++|.++..+| +.++|..+|
T Consensus 173 a~~~LG~al~~LG~~----------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG-----------r~deA~~~l 231 (282)
T 4f3v_A 173 AGVAHGVAAANLALF----------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQG-----------NESAAVALL 231 (282)
T ss_dssp HHHHHHHHHHHTTCH----------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH----------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence 455555555555555 56666666555433 44 4455566666666655 666666666
Q ss_pred HHHHHhCCCCHHHHHHH
Q 028992 111 QRAVDEEPTNELYQKSL 127 (200)
Q Consensus 111 qkAl~l~P~~~~y~kAl 127 (200)
++++..+|+ +....+|
T Consensus 232 ~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHSCC-HHHHHHH
T ss_pred HHHHhcCCc-HHHHHHH
Confidence 666666655 5444444
No 181
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.84 E-value=2e-09 Score=87.34 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=92.3
Q ss_pred HHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcc----------cccccccHHHHHHHHHHHHHh-
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFES----------VSDSKKIINEAISKFEEALVI- 71 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~----------~~~~~~~~~eAi~~le~AL~l- 71 (200)
.+++.+++|++.+++++++.|.. +.++.++|.++..+|++.. ..+....+++|+..+++++.+
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888887765543 3377888888888777100 001111249999999999887
Q ss_pred -----CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------------
Q 028992 72 -----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------- 121 (200)
Q Consensus 72 -----dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------- 121 (200)
.|....++.++|.++...| ++++|+.+|++++++.|...
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4555678899999999988 99999999999998865431
Q ss_pred --HHHHHHHhCCCC------hHHHHHHHHHHHhcc
Q 028992 122 --LYQKSLEVSTKA------PELHMELHKHGINQQ 148 (200)
Q Consensus 122 --~y~kAle~~~k~------~e~~~~l~~~~~~~~ 148 (200)
.+++++++.++. +..+..++..+..++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 666777766555 667778888777554
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=9.6e-09 Score=79.05 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=88.0
Q ss_pred HHhchHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---CCC----C
Q 028992 9 DRLLLSEHNRKTAEANYA------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPA----K 75 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~----~ 75 (200)
-+++.|++|++.+++++. ..|..+.++.++|.++..+|++ ++|+..|++++++ .|+ .
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW----------DAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCccHHHH
Confidence 456789999999999998 6677888999999999999998 9999999999999 443 3
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NELYQKSLEVSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~~y~kAle~~~k~~e~~~~l~~~~~~~~ 148 (200)
..+++++|.++..+| ++++|+.+|++++++.+. +... ...++.+++..+..++
T Consensus 107 ~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 107 SANAYEVATVALHFG-----------DLAGARQEYEKSLVYAQQADDQVA---------IACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhccchHH---------HHHHHHHHHHHHHHCc
Confidence 567899999999988 999999999999977332 1111 1334567777776544
No 183
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.80 E-value=2.1e-08 Score=87.23 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=73.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCC-cccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992 27 KDPLDADNLTRWGEALLELSQF-ESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDF 103 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~-~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~ 103 (200)
++|+|++.++..|.++.....- ..+........+|...+++|+++||+ +..+|..||..|... | +...|+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v----P--p~~gGd~ 220 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA----P--ESFGGGM 220 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS----C--TTTTCCH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC----C--CccCCCH
Confidence 3477899999999999885543 45667888899999999999999999 777999999999884 1 1112499
Q ss_pred HHHHHHHHHHHHhCCCC
Q 028992 104 DKASECFQRAVDEEPTN 120 (200)
Q Consensus 104 d~A~~~fqkAl~l~P~~ 120 (200)
++|.++|+||++++|+.
T Consensus 221 ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 221 EKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999999975
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.79 E-value=1.8e-08 Score=73.32 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=77.5
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC------C
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA------K 75 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~------~ 75 (200)
+-+++.+++|++.+++++...+.. +.++.++|.++..++++ ++|+..+++++++.+. .
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~ 128 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGE 128 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHccchHhH
Confidence 346778999999999999876553 67899999999999998 9999999999988433 2
Q ss_pred HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..++.++|.+|...| ++++|+.++++++++...
T Consensus 129 ~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 129 GRACWSLGNAYTALG-----------NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHH
Confidence 567889999999988 999999999999987543
No 185
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.2e-08 Score=88.06 Aligned_cols=111 Identities=12% Similarity=-0.010 Sum_probs=93.9
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-K-HYTLWSLGNAH 86 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-~-~~a~~~LG~a~ 86 (200)
-.++.|++|++.++.....+|++. .++.+|.++++.+++ ++|+..|++++...+. . .+++++||.++
T Consensus 113 ~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~----------~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 113 AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW----------TDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH----------HHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH----------HHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 356799999999999999999999 999999999999999 9999999998876422 2 46999999999
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHhC--CC-CH---------------------HHHHHHHhCCCChHHHHHHHH
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEE--PT-NE---------------------LYQKSLEVSTKAPELHMELHK 142 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~--P~-~~---------------------~y~kAle~~~k~~e~~~~l~~ 142 (200)
..+| ++++|+.+|++++.-. |. .. .|+++++.+|+ ++.+..|..
T Consensus 182 ~~LG-----------~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLA-----------LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTT-----------CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCC-----------CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999 9999999999999655 55 21 78888899988 776655543
No 186
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.75 E-value=1.1e-07 Score=68.84 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCcccCChHHhhcC
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-------PAKHYTLWSLGNAHTSCGFLTADLSEAKGD 102 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-------P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~ 102 (200)
-+++-.+.+|..++..++| ..|+.-|++|++.. +..++++.+||.+|..+| +
T Consensus 3 Lsa~dc~~lG~~~~~~~~y----------~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-----------~ 61 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADY----------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-----------D 61 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-----------C
T ss_pred CCHHHHHHHHHHHHHccch----------HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-----------C
Confidence 4567788999999999998 99999999999873 457899999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 103 FDKASECFQRAVDEEPTNELYQKS 126 (200)
Q Consensus 103 ~d~A~~~fqkAl~l~P~~~~y~kA 126 (200)
+++|+.++++|++++|++......
T Consensus 62 ~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 62 LDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHhh
Confidence 999999999999999999754433
No 187
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.72 E-value=2.5e-08 Score=86.75 Aligned_cols=94 Identities=12% Similarity=-0.020 Sum_probs=84.1
Q ss_pred hHHHHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh-----cCCcccccccccHHHHHHHHHHHHHhCCCC-HH
Q 028992 6 SDFDRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLEL-----SQFESVSDSKKIINEAISKFEEALVIDPAK-HY 77 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l-----~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-~~ 77 (200)
.++..+.....|+...++++++||+ +..+|+-+|..|... |+. +.|..+|++||+|+|+. .+
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~----------ekA~~~ferAL~LnP~~~id 240 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM----------EKAHTAFEHLTRYCSAHDPD 240 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH----------HHHHHHHHHHHHHCCTTCSH
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH----------HHHHHHHHHHHHhCCCCCch
Confidence 4556778889999999999999999 788999999999885 454 99999999999999986 99
Q ss_pred HHHHHHHHHHhc-CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 78 TLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 78 a~~~LG~a~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+++.+|..+... | ++++|..++++|+..+|..
T Consensus 241 ~~v~YA~~l~~~~g-----------d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 241 HHITYADALCIPLN-----------NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHTTTTTT-----------CHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCCCC
Confidence 999999999874 7 9999999999999988773
No 188
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.71 E-value=1.5e-07 Score=84.24 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-c---------------------------------ccccH
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-D---------------------------------SKKII 58 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-~---------------------------------~~~~~ 58 (200)
.+.+|+..++++++++|+++.++..++.++......+... . ..+.+
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 3689999999999999999999998888886432211000 0 12345
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
++|+..+++|+.+||+ ..+|..+|.++...| ++++|++.|++|++++|....
T Consensus 294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G-----------~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKG-----------MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCcCh
Confidence 6666666666666653 455555666666655 666666666666666665543
No 189
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.69 E-value=1e-07 Score=85.34 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS-CGF 91 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~-~G~ 91 (200)
.+++|++.++++.+.+|.++..++++|.+|... ....+.+++|+..|++|. |+++.++++||.+|.. .+
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g------~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~- 263 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA------TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE- 263 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG------GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-
Confidence 889999999999999999999999999998542 122345699999999998 9999999999999542 11
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
.+++++|+.+|++|++.+.... .|++|. +..++++++|+..+..
T Consensus 264 --------~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 264 --------LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp --------GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred --------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 4499999999999997652222 455555 7889999999988775
No 190
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.67 E-value=1e-07 Score=80.82 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=93.9
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------H
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------T 78 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~-----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------a 78 (200)
..+.+++|+..+++++...|.+.. ++..+|.++...|++ ++|+..|++++.+.|...+ +
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL----------TRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 356899999999999999886532 678899999999998 9999999999998776543 3
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC--------CCH---------------------HHHHHHHh
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP--------TNE---------------------LYQKSLEV 129 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P--------~~~---------------------~y~kAle~ 129 (200)
+.++|.++...| ++++|+.+|++++++.+ ... .+++++++
T Consensus 96 ~~~la~~~~~~G-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 96 LIQQSEILFAQG-----------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678999999999 99999999999998752 221 67778877
Q ss_pred CCCC-----hHHHHHHHHHHHhcc
Q 028992 130 STKA-----PELHMELHKHGINQQ 148 (200)
Q Consensus 130 ~~k~-----~e~~~~l~~~~~~~~ 148 (200)
.++. ...+.+++..+..++
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHHHHHcC
Confidence 7653 356777777776544
No 191
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.67 E-value=6.8e-08 Score=77.41 Aligned_cols=89 Identities=19% Similarity=0.070 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcC
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--AKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP--~~~~a~~~LG~a~~~~G 90 (200)
.+++|++.++++. +++++.+++++|.++.. +....+.+++|+..|++|++.+| +++.++++||.+|..-.
T Consensus 68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~------g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVN------RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTC------GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHc------CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC
Confidence 6899999999984 57899999999999865 11223455999999999999999 46999999999998811
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
...+++++|+.+|++|+++
T Consensus 140 -------g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 140 -------HGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp -------SSSCCHHHHHHHHHHHHHT
T ss_pred -------CCCCCHHHHHHHHHHHHHc
Confidence 0123999999999999999
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.64 E-value=1.7e-07 Score=86.10 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=82.4
Q ss_pred HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCC
Q 028992 8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPA 74 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~ 74 (200)
+.+.+.|++|+..+++++++ +|.-+.++.++|.+|..+|++ ++|+..++++|++ -|+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----------~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY----------EEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHSCTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHHHHcCCC
Confidence 34557899999999999964 344456789999999999998 9999999999987 566
Q ss_pred CHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 028992 75 KHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-----EPTNELYQKSL 127 (200)
Q Consensus 75 ~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-----~P~~~~y~kAl 127 (200)
+++ .+.+||.+|..+| ++++|+.+|++|+++ -|+++...+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAG-----------HIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 665 5679999999999 999999999999975 68888665554
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=4.4e-07 Score=68.57 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS----C 89 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~----~ 89 (200)
+++|++.++++.+. +++++++++|.+|..- ....+.+++|+..|++|.+. .+++++++||.+|.. .
T Consensus 41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G------~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENG------KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC------SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC------CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 44577777777765 6788888888887651 11223448888888888776 678888888888876 4
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
+ ++++|+.+|++|.+...
T Consensus 111 ~-----------d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 111 K-----------NEKQAVKTFEKACRLGS 128 (138)
T ss_dssp C-----------CHHHHHHHHHHHHHTTC
T ss_pred c-----------CHHHHHHHHHHHHHCCC
Confidence 4 88888888888887744
No 194
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.62 E-value=1.7e-07 Score=84.57 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=83.6
Q ss_pred hHHHHhchHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----C
Q 028992 6 SDFDRLLLSEHNRKTAEANYAK-----DPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----D 72 (200)
Q Consensus 6 ~~~~~l~~fe~A~~~~e~a~~~-----~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----d 72 (200)
+++.+.+.|++|++.+++++++ .|++ +.++.++|.+|..+|++ ++|+..++++|.+ -
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~----------~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL----------EEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhHHHHcC
Confidence 3456677899999999999964 3444 56789999999999998 9999999999977 4
Q ss_pred CCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 028992 73 PAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-----EPTNELYQKSL 127 (200)
Q Consensus 73 P~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-----~P~~~~y~kAl 127 (200)
|++|+ .+++||.+|..+| ++++|+.+|++|+++ -|+++.+...+
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQG-----------MFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 66665 5789999999999 999999999999986 57777666544
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.58 E-value=1.6e-07 Score=66.66 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGNA 85 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--~~a~~~LG~a 85 (200)
+-+++.|++|++.++++++++|+++.+++++|.++..+|++ ++|+..|+++++++|+. ..+.-.+..+
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT----------DDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 35678999999999999999999999999999999999998 99999999999998764 4444556666
Q ss_pred HHhcC
Q 028992 86 HTSCG 90 (200)
Q Consensus 86 ~~~~G 90 (200)
+...+
T Consensus 87 l~~~~ 91 (100)
T 3ma5_A 87 KLKAE 91 (100)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 65544
No 196
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.57 E-value=1.1e-07 Score=86.06 Aligned_cols=95 Identities=7% Similarity=0.007 Sum_probs=78.6
Q ss_pred hchHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCCCHH
Q 028992 11 LLLSEHNRKTAEANYAK-----DPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKHY 77 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~-----~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~~~~ 77 (200)
.+.|++|+..+++++++ .|+++ .++.++|.+|..+|++ ++|+..++++|++ -|++++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----------~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW----------EGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHHHHHHHcCCCChH
Confidence 34689999999999973 45554 5678999999999998 9999999999977 566665
Q ss_pred ---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 028992 78 ---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-----EPTNELYQKS 126 (200)
Q Consensus 78 ---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-----~P~~~~y~kA 126 (200)
.+.+||.+|..+| ++++|+.+|+||+++ -|+++.....
T Consensus 381 ~a~~l~nLa~~~~~qg-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 381 VASMWLKLGRLYMGLE-----------NKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 5789999999999 999999999999986 4777655543
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.54 E-value=8e-07 Score=67.10 Aligned_cols=96 Identities=9% Similarity=-0.051 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cC
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS-CG 90 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~-~G 90 (200)
..+++|++.++++.+.+..++. +|.++...... ++|+..|++|.+. .++.++++||.+|.. .|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~----------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINK----------QKLFQYLSKACEL--NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCH----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence 4688999999999998855554 88888765444 7799999999987 789999999999987 11
Q ss_pred cccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
..+++++|+.+|++|.+.. .++++.+|+..+..
T Consensus 73 --------~~~d~~~A~~~~~~Aa~~g---------------~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 73 --------VKKDLRKAAQYYSKACGLN---------------DQDGCLILGYKQYA 105 (138)
T ss_dssp --------SCCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHH
T ss_pred --------CCccHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHC
Confidence 1239999999999998762 46666777766653
No 198
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.52 E-value=4.4e-07 Score=69.73 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=81.7
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-P-AKHYTLWSLGNAHT 87 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-P-~~~~a~~~LG~a~~ 87 (200)
..-....+++.|.+....++...++.+++|.+|....+. ..+.++|..|+..++.+ | ..-+.+|.||..++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~-------~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-------DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-------HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 334566778888888888999999999999999975443 34577999999999988 6 67799999999999
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+| +|++|..|++..|+.+|+|.
T Consensus 86 klg-----------~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 86 RLK-----------EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred Hhh-----------hHHHHHHHHHHHHHhCCCCH
Confidence 999 99999999999999999996
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.52 E-value=1.9e-06 Score=76.64 Aligned_cols=109 Identities=11% Similarity=-0.028 Sum_probs=72.5
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE----LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~----l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~ 86 (200)
...+++|++.++++.+. +++++++.+|.++.. .+++ ++|+..|++|.+. .++.++++||.+|
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------~~A~~~~~~a~~~--~~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDY----------AQAVIWYKKAALK--GLPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 35677788888887765 678888888888876 3333 7777777777664 4777777777777
Q ss_pred Hh----cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHH
Q 028992 87 TS----CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHME 139 (200)
Q Consensus 87 ~~----~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~ 139 (200)
.. .+ ++++|+.+|++|++.+.... .|+++++. ..++.+.+
T Consensus 122 ~~g~g~~~-----------~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~ 188 (490)
T 2xm6_A 122 HEGNGVKV-----------DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQ 188 (490)
T ss_dssp HHTSSSCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HcCCCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 66 44 77777777777766532111 44455444 45667777
Q ss_pred HHHHHHh
Q 028992 140 LHKHGIN 146 (200)
Q Consensus 140 l~~~~~~ 146 (200)
|+..+..
T Consensus 189 Lg~~y~~ 195 (490)
T 2xm6_A 189 LGYMYSR 195 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766653
No 200
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.50 E-value=1.9e-06 Score=76.63 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~ 91 (200)
..+++|++.++++.+. .++++++++|.++..- ....+..++|+..|++|++. .++++++.||.+|....
T Consensus 237 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g------~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~- 305 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG------LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGA- 305 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT------TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCB-
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC------CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC-
Confidence 3556666666666554 4566677777766651 01123348888888888765 67888888888887750
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
....+++++|+.+|++|++.++... .|+++++. ..++++.+|+..+..
T Consensus 306 -----~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 306 -----EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQ 375 (490)
T ss_dssp -----TTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred -----CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 0011288999999999888755433 45555555 678888888888875
No 201
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.46 E-value=2.5e-06 Score=76.24 Aligned_cols=109 Identities=10% Similarity=0.057 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (200)
Q Consensus 15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~ 94 (200)
+++...++.+...+| ++++++|.++...|.. ...++|+..|++|.+.+|....++++||.+|....
T Consensus 162 ~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~-------~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~---- 227 (452)
T 3e4b_A 162 DDVERICKAALNTTD---ICYVELATVYQKKQQP-------EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT---- 227 (452)
T ss_dssp HHHHHHHHHHTTTCT---THHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG----
T ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCc-------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----
Confidence 344445555544444 4999999999987621 13399999999999999999999999999996530
Q ss_pred ChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 95 DLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
...+++++|+.+|++|. |++. .|+++.+ ...++++++|+..+.
T Consensus 228 ---~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 228 ---LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY 294 (452)
T ss_dssp ---GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence 12349999999999998 5553 4555554 458999999999887
No 202
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.44 E-value=4e-07 Score=77.17 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=77.4
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--------CC
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDA------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--------PA 74 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--------P~ 74 (200)
-..+.|++|++.+++++.+.|... .++.++|.++...|++ ++|+..|++++++. |.
T Consensus 64 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 64 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL----------QTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHhccccCcH
Confidence 356789999999999998766543 3478899999999998 99999999999985 44
Q ss_pred CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 75 ~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
...++.++|.++...| ++++|..++++++++.|.
T Consensus 134 ~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhhc
Confidence 5667889999999999 999999999999999886
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.30 E-value=4.9e-06 Score=59.92 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=58.7
Q ss_pred HHhchHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKD-------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~-------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
-+.+.|++|...++.|+... +..++++.++|.++.++|++ ++|+..+++|++++|++..++.|
T Consensus 16 ~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHhh
Confidence 34568999999999999863 45789999999999999998 99999999999999999999888
Q ss_pred HH
Q 028992 82 LG 83 (200)
Q Consensus 82 LG 83 (200)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.18 E-value=2.2e-05 Score=80.45 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
.++.+++|.+.+++ .+++.+|+++|.++...|++ ++||.+|++| ++++.|..+|.++...
T Consensus 1088 ~i~nldrAiE~Aer-----vn~p~vWsqLAKAql~~G~~----------kEAIdsYiKA-----dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAER-----CNEPAVWSQLAKAQLQKGMV----------KEAIDSYIKA-----DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCH----------HHHHHHHHhc-----CChHHHHHHHHHHHHc
Confidence 45556666666554 57899999999999999998 9999999886 9999999999999999
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
| +|++|+++|++|.+.+++.
T Consensus 1148 G-----------kyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1148 G-----------NWEELVKYLQMARKKARES 1167 (1630)
T ss_pred C-----------CHHHHHHHHHHHHhhcccc
Confidence 9 9999999999999998775
No 205
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.13 E-value=5.3e-05 Score=59.28 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP-AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP-~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
+.-.+++.++++.+|....+. ..+.++|..|+..++-+| ..-+.+|.|+..++++| +|++|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~-------~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-----------~Y~~A 96 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMA 96 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSH-------HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-----------CHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-----------hHHHH
Confidence 367899999999999985543 445899999999999999 46699999999999999 99999
Q ss_pred HHHHHHHHHhCCCCHH
Q 028992 107 SECFQRAVDEEPTNEL 122 (200)
Q Consensus 107 ~~~fqkAl~l~P~~~~ 122 (200)
..|.+..|+.+|+|..
T Consensus 97 r~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHhcCCCcHH
Confidence 9999999999999963
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.04 E-value=1.2e-05 Score=57.57 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
.++|+..+++++++||+++.+++.+|.+++..|+| ++||..++++++.+|.++.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y----------~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF----------QEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTCCCTTCC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCcc
Confidence 57999999999999999999999999999999999 9999999999999999543
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.02 E-value=3.9e-05 Score=66.86 Aligned_cols=93 Identities=13% Similarity=0.007 Sum_probs=79.0
Q ss_pred HHHhchHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKDP--LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWS 81 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P--~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~~a~~~ 81 (200)
+...+.+++|++.+.+.+..+| ++.+++...+.+++.+|+. +.|...+++..+.+|+ +..++..
T Consensus 110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~----------d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV----------STASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCccccccchHHHHH
Confidence 3557899999999999999997 8999999999999999998 9999999999999995 4566677
Q ss_pred HHHH--HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 82 LGNA--HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 82 LG~a--~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
|+.+ ....| .+++.+|..+|+++.+..|+
T Consensus 180 Laea~v~l~~g---------~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 180 LAESYIKFATN---------KETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHT---------CSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHhC---------CccHHHHHHHHHHHHHhCCC
Confidence 7666 44444 45899999999999888887
No 208
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.01 E-value=4.7e-05 Score=58.91 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
--.+++.++++.+|....+ ...+.++|..|++.++.+|. .-+.+|.|+..++++| +|++|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~-------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg-----------dY~~Ar 98 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTD-------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMAK 98 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-----------CHHHHH
T ss_pred CCChhhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh-----------hHHHHH
Confidence 3378999999999998544 34458999999999999994 5799999999999999 999999
Q ss_pred HHHHHHHHhCCCCH
Q 028992 108 ECFQRAVDEEPTNE 121 (200)
Q Consensus 108 ~~fqkAl~l~P~~~ 121 (200)
.|.++.++.+|+|.
T Consensus 99 ~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 99 RYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHTTCTTCH
T ss_pred HHHHHHHhhCCCCH
Confidence 99999999999997
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.97 E-value=5.4e-05 Score=67.64 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=75.1
Q ss_pred HHHhhCCCCHHHH--HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc---------
Q 028992 23 ANYAKDPLDADNL--TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF--------- 91 (200)
Q Consensus 23 ~a~~~~P~d~~~l--~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~--------- 91 (200)
++...-|.+++++ +..|..++..+. ...+.+|+.+|++|+++||+.+.+|-.++.+|.....
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~-------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGD-------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 4445678877766 445555554322 2345999999999999999999999988888752110
Q ss_pred --------------ccCChH---Hh-------hcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHH
Q 028992 92 --------------LTADLS---EA-------KGDFDKASECFQRAVDEEPTNE--------------------LYQKSL 127 (200)
Q Consensus 92 --------------l~~~~~---~a-------~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAl 127 (200)
+.|..+ ++ +|++++|+.++++|++++|+.. .|++|+
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 001111 11 6799999999999999998753 788888
Q ss_pred HhCCCChH
Q 028992 128 EVSTKAPE 135 (200)
Q Consensus 128 e~~~k~~e 135 (200)
.++|..+.
T Consensus 338 rL~P~~~t 345 (372)
T 3ly7_A 338 NLRPGANT 345 (372)
T ss_dssp HHSCSHHH
T ss_pred hcCCCcCh
Confidence 88887764
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.2e-05 Score=67.26 Aligned_cols=88 Identities=5% Similarity=-0.052 Sum_probs=70.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDAD-----------------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~-----------------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld 72 (200)
+.+.|++|++.+..+++.+|...+ ++.++|.+|...|++ ++|++.+++++.+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~----------~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK----------DKLREFIPHSTEYM 85 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHH
Confidence 456899999999999999988653 589999999999998 99999999998886
Q ss_pred CCCHH------HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 73 PAKHY------TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 73 P~~~~------a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
+.... ++.++|.++...| ++++|+.++++++...+
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~ 126 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPD-----------SLDDQIFVCEKSIEFAK 126 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCS-----------CHHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHH
Confidence 66433 3456777777777 77778777777776543
No 211
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.91 E-value=5.6e-05 Score=65.90 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=68.9
Q ss_pred HHhchHHHHHHHHHHHHhhCCC----CHHHHHHHHHH--HHHhc--CCcccccccccHHHHHHHHHHHHHhCCC--CHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPL----DADNLTRWGEA--LLELS--QFESVSDSKKIINEAISKFEEALVIDPA--KHYT 78 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~----d~~~l~~lG~a--l~~l~--~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a 78 (200)
-++++++.|++.+++..+.+|+ +-.++++++.+ .+..| ++ ++|+..|+++....|+ ....
T Consensus 147 L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~----------q~A~~~f~El~~~~p~~~~~~l 216 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA----------TSNFYYYEELSQTFPTWKTQLG 216 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT----------THHHHHHHHHHTTSCSHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhCCCcccHHH
Confidence 4678999999999999999995 45667777776 44444 45 9999999999888887 4556
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
+++ ++..+| ++++|...+++.++..
T Consensus 217 Lln---~~~~~g-----------~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 217 LLN---LHLQQR-----------NIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHH---HHHHHT-----------CHHHHHHHHHHHHSHH
T ss_pred HHH---HHHHcC-----------CHHHHHHHHHHHHHhc
Confidence 666 788888 9999999999888774
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.79 E-value=9.3e-05 Score=75.88 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC--------------
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP-------------- 73 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP-------------- 73 (200)
++.++.|++|+..|.++ ..|.++|.+|..+|++ ++|++++++|...++
T Consensus 1205 le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~----------q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY----------QAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH----------HHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence 45667888888888874 5888888888888887 899999988844333
Q ss_pred -----------CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 74 -----------AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 74 -----------~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
.+++-+..++..|...| +|++|+.++++++.++|.+.
T Consensus 1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G-----------~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1267 RLAQMCGLHIVVHADELEELINYYQDRG-----------YFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccChhHh
Confidence 13334444555555555 99999999999999999886
No 213
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.77 E-value=6.8e-05 Score=68.49 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=82.8
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~ 89 (200)
+++.|++|.+.++++ +++.+|..++.++...|+| +.|..+... |.++| +-+..+.+.|.+.
T Consensus 160 ~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef----------~lA~~~~l~-L~~~a---d~l~~lv~~Yek~ 220 (449)
T 1b89_A 160 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF----------RLAQMCGLH-IVVHA---DELEELINYYQDR 220 (449)
T ss_dssp TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH----------HHHHHTTTT-TTTCH---HHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcH----------HHHHHHHHH-HHhCH---hhHHHHHHHHHHC
Confidence 455566666666665 3566666666666666655 555444443 22222 2233455666666
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCC-----CChHHHHHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVST-----KAPELHMELH 141 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~-----k~~e~~~~l~ 141 (200)
| +|++|+.++++++.+++.+. .|.+.+.+.+ ..+.+|.++.
T Consensus 221 G-----------~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 221 G-----------YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp T-----------CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred C-----------CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 6 99999999999999988885 3333334444 5677777777
Q ss_pred HHHHhccc----------cCCCCCcch--h-hhhcccccchhhhhhhHHH
Q 028992 142 KHGINQQT----------LGGGSSASS--A-QSSKKKSSDLKYDIFGWAI 178 (200)
Q Consensus 142 ~~~~~~~~----------~~~~~~~~~--~-~~~~~~~~~~~y~~~g~~~ 178 (200)
-.+...+. ..+++=.+. | ..-+..++|+-|-...+.+
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 66654432 122223333 2 3445688999888777765
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.75 E-value=6.4e-05 Score=59.26 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKD-P-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~-P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
.+++++..++..++.+ | ++.++++++|.++.+++++ ++|+.+++++|+++|++..+....-.+
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y----------~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6779999999999999 8 6799999999999999998 999999999999999999987654443
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=6.4e-05 Score=64.36 Aligned_cols=85 Identities=8% Similarity=0.013 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCHHHHH
Q 028992 13 LSEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKHYTLW 80 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~~a~~ 80 (200)
.++.|.+.++.++.. .+.-+.++.++|.++...|++ ++|+..+++++.. .|...+++.
T Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 179 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY----------KDSLALINDLLREFKKLDDKPSLVDVHL 179 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSSCSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh----------HHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 466677766666653 344578899999999999998 9999999999987 555678999
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
++|.+|..+| +|++|..++++++...+
T Consensus 180 ~~~~~~~~~~-----------~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 180 LESKVYHKLR-----------NLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-----------cHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999998753
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=0.00011 Score=67.35 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=71.9
Q ss_pred HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCC
Q 028992 8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPA 74 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~ 74 (200)
+..++.|++|+..+++++++ +|+-+..++++|.+|..+|++ ++|+..|++|++| -|+
T Consensus 361 y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~----------~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 361 LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI----------EVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999999864 344555789999999999998 9999999999986 788
Q ss_pred CHHHH---HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 75 KHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 75 ~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
+|++- -+|+.++..++ .|++|...|+++.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~-----------~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELR-----------MFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 87654 57888888877 89999999999854
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.51 E-value=0.00061 Score=64.89 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=87.5
Q ss_pred HhchHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAK-DPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~-~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~ 87 (200)
|.+..+.||+.+++|++. .+....++..++..-...++ . +.|...|+++++..|+++..+...+....
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~----------e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT----------KTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 566788999999999988 55567777766665544433 5 89999999999999999998878888777
Q ss_pred hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CH----------------------HHHHHHHhCCCChHHHHHHHH
Q 028992 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE----------------------LYQKSLEVSTKAPELHMELHK 142 (200)
Q Consensus 88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~----------------------~y~kAle~~~k~~e~~~~l~~ 142 (200)
..| +.+.|...|++|+...|+ .. .++++++..|+.+.+-.=..+
T Consensus 516 ~~~-----------~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~r 583 (679)
T 4e6h_A 516 YVN-----------EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNK 583 (679)
T ss_dssp HHT-----------CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred hCC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 777 999999999999998884 21 677888888887765544443
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.49 E-value=9.7e-05 Score=67.48 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------- 121 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------- 121 (200)
++|++++++| +++.+|-.++.++...| +|+.|..|... |..+|++.
T Consensus 165 q~AVea~~KA-----~~~~~Wk~v~~aCv~~~-----------ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 165 QAAVDGARKA-----NSTRTWKEVCFACVDGK-----------EFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHHHHHH-----TCHHHHHHHHHHHHHTT-----------CHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHc-----CCchhHHHHHHHHHHcC-----------cHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 6666666666 35566666666666665 66666555553 33444432
Q ss_pred -HHHHHHHhCCCChHHHHHHHHHHH
Q 028992 122 -LYQKSLEVSTKAPELHMELHKHGI 145 (200)
Q Consensus 122 -~y~kAle~~~k~~e~~~~l~~~~~ 145 (200)
.++++|.+.+..-..+.+|+..+.
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 666777777777777777776554
No 219
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.45 E-value=0.0012 Score=62.98 Aligned_cols=82 Identities=7% Similarity=-0.061 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI-SKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi-~~le~AL~ldP~~~~a~~~LG~a~~~~G~l 92 (200)
.+..+..|++++...|.+++.|+..+..+...++. ++|+ ..|++|+...|++...|..++......|
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~----------~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-- 392 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD----------STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-- 392 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC----------TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--
Confidence 34456789999999999999999999999888776 8897 9999999999999988888999999988
Q ss_pred cCChHHhhcCHHHHHHHHHHHHHh
Q 028992 93 TADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 93 ~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++++|...|++++..
T Consensus 393 ---------~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 393 ---------KIPEIETTILSCIDR 407 (679)
T ss_dssp ---------CHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHH
Confidence 999999999999975
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.00049 Score=62.09 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 55 KKIINEAISKFEEALVI-----DPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126 (200)
Q Consensus 55 ~~~~~eAi~~le~AL~l-----dP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA 126 (200)
.+.+++|+..|+++|++ .|++++ ++.+||.+|..+| +|++|+.++++++++ +++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-----------~~~eA~~~~~~aL~i------~~~~ 373 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-----------DWEGALKYGQKIIKP------YSKH 373 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH------HHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHH------HHHH
Confidence 35679999999999986 677765 5679999999999 999999999999975 2222
Q ss_pred HH-hCCCChHHHHHHHHHHHhcc
Q 028992 127 LE-VSTKAPELHMELHKHGINQQ 148 (200)
Q Consensus 127 le-~~~k~~e~~~~l~~~~~~~~ 148 (200)
+- -.|.-...+.||+..+..|+
T Consensus 374 lG~~Hp~~a~~l~nLa~~~~~qg 396 (433)
T 3qww_A 374 YPVYSLNVASMWLKLGRLYMGLE 396 (433)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHHHhcc
Confidence 21 11223344566666666555
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.76 E-value=0.03 Score=50.72 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH------- 86 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~------- 86 (200)
.+..+..|++++...|.+++.|+..+.-+...|+. ++|...|++|+.. |.+...+...+...
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~----------~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~ 263 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQK----------EKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG 263 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence 44567899999999999999999999998887776 9999999999999 99877665544431
Q ss_pred ---Hhc--Cc-----c--cCChH----------HhhcCHHHHHHHHHHHHHhCCCC-H----------------------
Q 028992 87 ---TSC--GF-----L--TADLS----------EAKGDFDKASECFQRAVDEEPTN-E---------------------- 121 (200)
Q Consensus 87 ---~~~--G~-----l--~~~~~----------~a~~~~d~A~~~fqkAl~l~P~~-~---------------------- 121 (200)
... +. + .+... .-.++.+.|...|++| . .|.. .
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence 000 00 0 00000 0134688899999999 3 3432 1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992 122 LYQKSLEVSTKAPELHMELHKHGIN 146 (200)
Q Consensus 122 ~y~kAle~~~k~~e~~~~l~~~~~~ 146 (200)
.|+++++..|+.|+++..+......
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5667777778888887776654443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.0028 Score=56.86 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 56 KIINEAISKFEEALVI-----DPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 56 ~~~~eAi~~le~AL~l-----dP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+.+++|++.++++|++ .|++++ ++.+||.+|..+| +|++|+.+++++++.
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-----------~~~eA~~~~~~~L~i 358 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-----------LLEEALFYGTRTMEP 358 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHh
Confidence 3459999999999976 566664 6788999999988 999999999999976
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.61 E-value=0.01 Score=47.40 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=64.1
Q ss_pred HhchHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---CCCC--
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDA---------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPAK-- 75 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~---------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~~-- 75 (200)
..+.|+.|+-.+..++....+++ +++..+|.+++..++| ..|...|++||.+ -|+.
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey----------rrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY----------RNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHCC-----
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHHHHHHhcCCC
Confidence 34578888888888665544444 4889999999999999 9999999998755 1222
Q ss_pred --------------------HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992 76 --------------------HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (200)
Q Consensus 76 --------------------~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk 112 (200)
.+..|.++.||..++ ++++|+...+.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~-----------~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK-----------QDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHC-----------CHHHHHHHHhc
Confidence 278899999999999 99999998664
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.16 E-value=0.011 Score=45.03 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 15 EHNRKTAEANYAKD-P-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 15 e~A~~~~e~a~~~~-P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
.+++..++..+..+ | ..-++++.+|..+.++++| ++|+.+++..|+++|++..|.-....
T Consensus 55 ~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y----------~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 55 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45777888888877 5 6789999999999999999 99999999999999999997654433
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.87 E-value=0.03 Score=43.09 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992 14 SEHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a 85 (200)
..+++..++..+..+| ..-++++.+|..+.++|++ ++|..+.+..|+++|++..|.-....+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY----------~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 3467888899999999 4689999999999999999 999999999999999999976544433
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.83 E-value=0.071 Score=48.25 Aligned_cols=82 Identities=13% Similarity=-0.009 Sum_probs=65.5
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
|.+..+.||+.++++ ...+....++..++..-...++ . +.|...|+.+++.-|+.++.++..+.....
T Consensus 298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~----------~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR----------ATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456789999999999 4333466777666665555553 5 999999999999999999988888777777
Q ss_pred cCcccCChHHhhcCHHHHHHHHHHH
Q 028992 89 CGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 89 ~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
+| +.+.|...|+++
T Consensus 367 ~~-----------~~~~aR~l~er~ 380 (493)
T 2uy1_A 367 IG-----------DEENARALFKRL 380 (493)
T ss_dssp HT-----------CHHHHHHHHHHS
T ss_pred cC-----------CHHHHHHHHHHH
Confidence 77 999999998887
No 227
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.69 E-value=0.044 Score=50.39 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
++..|...|++|+.++|++...|..||.+....| +.-+|+-+|-|++....-++
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-----------~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-----------DHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-----------ccHHHHHHHHHHHhcCCCCh
Confidence 3489999999999999999999999999999988 99999999999998776676
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.61 E-value=0.016 Score=46.20 Aligned_cols=63 Identities=8% Similarity=0.011 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCcccCChHHhhcCHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---------TLWSLGNAHTSCGFLTADLSEAKGDFD 104 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---------a~~~LG~a~~~~G~l~~~~~~a~~~~d 104 (200)
++..+...++..+.| +.|+.....++.+..++++ ++.++|.+++..| +|.
T Consensus 22 ~l~dqik~L~d~~LY----------~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~-----------eyr 80 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLH----------SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK-----------EYR 80 (167)
T ss_dssp CHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT-----------CHH
T ss_pred HHHHHHHHHHHhhhH----------HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc-----------HHH
Confidence 455666677776666 9999988887776544444 8899999999988 999
Q ss_pred HHHHHHHHHHHhC
Q 028992 105 KASECFQRAVDEE 117 (200)
Q Consensus 105 ~A~~~fqkAl~l~ 117 (200)
.|..+|++||.+.
T Consensus 81 rA~~~y~qALq~~ 93 (167)
T 3ffl_A 81 NAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.58 E-value=0.051 Score=42.30 Aligned_cols=59 Identities=8% Similarity=-0.033 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992 15 EHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG 83 (200)
Q Consensus 15 e~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG 83 (200)
.+++..++..+..+| ..-++++.++..+.+++++ ++|..+.+..|+++|++..+.-...
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y----------~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY----------SMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 467788888888888 5788999999999999999 9999999999999999999765443
No 230
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.39 E-value=0.062 Score=45.96 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSL 127 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAl 127 (200)
+.+++|++.++..++-+|.|.+..+.|-..++..| +++.|.+-++-+.+++|+.. .||.++
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-----------~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-----------DFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 34599999999999999999999999999999988 99999999999999999997 666665
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.18 E-value=0.23 Score=43.56 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH--
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA-- 113 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA-- 113 (200)
..++.+++..|++ .+|+..+++++..+|-+-.+|..|-.+|...| +..+|+..|+++
T Consensus 175 ~~~~~~~l~~g~~----------~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G-----------r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRA----------SAVIAELEALTFEHPYREPLWTQLITAYYLSD-----------RQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence 3455556666666 99999999999999999999999999999999 888888777775
Q ss_pred -----HHhCCCCH---HHHHHHHhCCCChH-----HHHHHHHHHH
Q 028992 114 -----VDEEPTNE---LYQKSLEVSTKAPE-----LHMELHKHGI 145 (200)
Q Consensus 114 -----l~l~P~~~---~y~kAle~~~k~~e-----~~~~l~~~~~ 145 (200)
+.++|.-+ .|+..+.-.|..+. ....+...+.
T Consensus 234 ~L~~eLG~~P~~~l~~l~~~il~~~~~~~~~~~~~~l~~i~~~L~ 278 (388)
T 2ff4_A 234 TLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLD 278 (388)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHcCCCCCCCCCCccccchhhhHhh
Confidence 34578776 67777766655544 3444444444
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.06 E-value=0.75 Score=36.25 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhhCCCCH--------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992 13 LSEHNRKTAEANYAKDPLDA--------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~--------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~ 84 (200)
..++-++.|++++..-|.+. -.|.+.+.- .++++. ++|...|+.|+.+.-+.+-+|...+.
T Consensus 34 ~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~----------d~aR~vy~~a~~~hKkFAKiwi~~Aq 102 (161)
T 4h7y_A 34 LLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEP----------DDARDYFQMARANCKKFAFVHISFAQ 102 (161)
T ss_dssp HHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCG----------GGCHHHHHHHHHHCTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCH----------HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34777889999998877642 244444432 344444 89999999999997777666666666
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
--.++| ++++|.+.+.+|+...|..
T Consensus 103 FEiRqg-----------nl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 103 FELSQG-----------NVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHHHTTCBC
T ss_pred HHHHcc-----------cHHHHHHHHHHHhccCCCc
Confidence 667788 9999999999999977754
No 233
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.05 E-value=0.64 Score=39.62 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=76.8
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA-H-- 86 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a-~-- 86 (200)
+-+.+.+|++..+..++.+|.|++....+-..|+-.|++ +.|...++-+.+++|+....-..+-.+ .
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w----------~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF----------ERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999999998 999999999999999977653332222 1
Q ss_pred -Hh----cCcccCCh----------------HHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 87 -TS----CGFLTADL----------------SEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 87 -~~----~G~l~~~~----------------~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
.. .|--+|.. ..+.|+.++|...-.+|++..|..
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11 12112222 245678888888888888887754
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.58 E-value=1 Score=43.38 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
++.++-|+.+-++|..+-|.....|+.|+.+|..+| +|+.|+-.+.-+
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-----------d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKE-----------EYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-----------cHHHHHHHHhcC
Confidence 556699999999999999999999999999999999 999999755443
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.47 E-value=0.65 Score=42.62 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=60.5
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHhcCcccCCh--
Q 028992 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA--------LVIDPAKHYTLWSLGNAHTSCGFLTADL-- 96 (200)
Q Consensus 27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A--------L~ldP~~~~a~~~LG~a~~~~G~l~~~~-- 96 (200)
...++...|.++|...+..+++ +.|+.+|.++ |.....+.+-+-.++......|.+..-.
T Consensus 676 ~~~~~~~~W~~la~~al~~~~~----------~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 676 TDESAEMKWRALGDASLQRFNF----------KLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA 745 (814)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhCcHhHHHHHHHHHHHcCCH----------HHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 4567899999999999999998 8999988875 2223555565555655555554100000
Q ss_pred HHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCC---hHHHHHHHHHHHh
Q 028992 97 SEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKA---PELHMELHKHGIN 146 (200)
Q Consensus 97 ~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~---~e~~~~l~~~~~~ 146 (200)
.--.|++++|+++|.+.-+. +..+.-|-...|.. +++...+..++..
T Consensus 746 ~~~~g~~~~a~~~~~~~~~~---~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~ 795 (814)
T 3mkq_A 746 YWIAGDIQGAKDLLIKSQRF---SEAAFLGSTYGLGDNEVNDIVTKWKENLIL 795 (814)
T ss_dssp HHHHTCHHHHHHHHHHTTCH---HHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHcCCh---HHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 00013666666665552221 23444444444333 4555555555543
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.42 E-value=1.5 Score=35.77 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH--Hh---------------CCCCHHHHH-HHHHHHHhcCc
Q 028992 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL--VI---------------DPAKHYTLW-SLGNAHTSCGF 91 (200)
Q Consensus 30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL--~l---------------dP~~~~a~~-~LG~a~~~~G~ 91 (200)
+..+..+--..|+..+.+ +..|+.+++..| ++ ||.+-+-++ .+|.+++..|
T Consensus 60 NT~Ts~YYk~LCy~klKd----------YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g- 128 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKD----------YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG- 128 (242)
T ss_dssp CBHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc-
Confidence 344444555555555444 499999999999 33 456766665 4888999999
Q ss_pred ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992 92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (200)
Q Consensus 92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl 127 (200)
+-++|+.+|.+....+|-....+--+
T Consensus 129 ----------~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 129 ----------YREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp ----------CHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ----------CHHHhhhHhhhhcCCccccchHHHHH
Confidence 99999999999999999888666333
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.48 E-value=0.7 Score=42.35 Aligned_cols=66 Identities=6% Similarity=-0.049 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~ 88 (200)
.++.|+..|.+|..++|++...++.+|.+....+++ -+|+..|-++|....-.+.+.-||...+-.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~----------l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc----------HHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 467999999999999999999999999999988887 899999999999888899999999988764
No 238
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=90.42 E-value=5.2 Score=36.05 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Q 028992 13 LSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNAHTSC 89 (200)
Q Consensus 13 ~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~a~~~~ 89 (200)
.+++|.+.+++-.... +-|..+++.+-.++...|+. ++|++.|++..+. .| +..+|..|=.+|...
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDP----------EMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCC-ccceehHHHHHHHHC
Confidence 3566666666654433 22666777777777777776 7777777766553 33 345566666667776
Q ss_pred CcccCChHHhhcCHHHHHHHHHHHHHh--CCCCHHH
Q 028992 90 GFLTADLSEAKGDFDKASECFQRAVDE--EPTNELY 123 (200)
Q Consensus 90 G~l~~~~~~a~~~~d~A~~~fqkAl~l--~P~~~~y 123 (200)
| ++++|.+.|++..+. .|+...|
T Consensus 154 g-----------~~~~A~~l~~~M~~~G~~Pd~~ty 178 (501)
T 4g26_A 154 G-----------DADKAYEVDAHMVESEVVPEEPEL 178 (501)
T ss_dssp T-----------CHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred C-----------CHHHHHHHHHHHHhcCCCCCHHHH
Confidence 6 777777777766643 4555533
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.38 E-value=7.6 Score=33.86 Aligned_cols=124 Identities=9% Similarity=-0.052 Sum_probs=84.4
Q ss_pred CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHH----------------H
Q 028992 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKF----------------E 66 (200)
Q Consensus 3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~l----------------e 66 (200)
|+.++.+|..+..+|++...+.=...-.|++.|..+|..|.+-+++ .+|..+| +
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~----------~~Ae~H~ilg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF----------EAAEKHLVLGTKESPEVLARMEYE 176 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH----------HHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHhcCCchHHHHHHHHHH
Confidence 6778889999999999998773233446999999999999997766 3333333 1
Q ss_pred HHHHhCCCCHHHHHHHHHH-HHhcCcccCChHHhhcCHHHHHHHHHHHHH----hCCC------------------CH--
Q 028992 67 EALVIDPAKHYTLWSLGNA-HTSCGFLTADLSEAKGDFDKASECFQRAVD----EEPT------------------NE-- 121 (200)
Q Consensus 67 ~AL~ldP~~~~a~~~LG~a-~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~----l~P~------------------~~-- 121 (200)
-..+-+|...+.+...+.. |...+ +...|..+|+.-++ .+|. .+
T Consensus 177 w~~~~~~~e~dlfiaRaVL~yL~l~-----------n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL 245 (336)
T 3lpz_A 177 WYKQDESHTAPLYCARAVLPYLLVA-----------NVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL 245 (336)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH
Confidence 1223356677777777775 45666 88888775544332 3342 33
Q ss_pred -----------------------HHHHHHHhCC-CChHHHHHHHHHHHhc
Q 028992 122 -----------------------LYQKSLEVST-KAPELHMELHKHGINQ 147 (200)
Q Consensus 122 -----------------------~y~kAle~~~-k~~e~~~~l~~~~~~~ 147 (200)
.|...|+.+| ...+.-..|+..+++-
T Consensus 246 NFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 246 NFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 5666666666 6677777777777754
No 240
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=90.36 E-value=3.7 Score=37.03 Aligned_cols=98 Identities=11% Similarity=-0.067 Sum_probs=77.9
Q ss_pred HHHhchHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 028992 8 FDRLLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGN 84 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~ 84 (200)
+-|.+.+++|.+.++.-.+.. .-|..+++.+=.+|.+.|+. ++|.+.|++-.+. .| +..+|..|-.
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~~~G~~P-d~~ty~~Li~ 183 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA----------DKAYEVDAHMVESEVVP-EEPELAALLK 183 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 456778999999998877653 33778888888899988887 9999999988765 34 4567888889
Q ss_pred HHHhcCcccCChHHhhcCHHHHHHHHHHHHH--hCCCCHHHHHHH
Q 028992 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVD--EEPTNELYQKSL 127 (200)
Q Consensus 85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~--l~P~~~~y~kAl 127 (200)
+|...| ++++|.+.|++.-+ ..|+...|..-.
T Consensus 184 ~~~~~g-----------~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 184 VSMDTK-----------NADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred HHhhCC-----------CHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 999988 99999999998765 468877665443
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.29 E-value=2.6 Score=33.51 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=34.9
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA 68 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A 68 (200)
++.++.|.+.++.. ++...|.++|.+-+..|++ +-|+.||+++
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~----------~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNA----------SLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCh----------HHHHHHHHHh
Confidence 45778887777654 7899999999999999998 7777777764
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.55 E-value=1.4 Score=34.74 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=52.4
Q ss_pred HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL 79 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~ 79 (200)
.++.+...++||..|+.++..+...+.+|...+.--++.|+. ..|...+.+|+.+.|+..+.+
T Consensus 69 ~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl----------~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 69 ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV----------KKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCcHHHH
Confidence 345566778899999999999999988887777766666666 999999999999999988765
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.53 E-value=1.9 Score=37.17 Aligned_cols=91 Identities=14% Similarity=-0.096 Sum_probs=64.2
Q ss_pred CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH---------------
Q 028992 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE--------------- 67 (200)
Q Consensus 3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~--------------- 67 (200)
|+.++.+|..+..+|++...+.=...-.|++.|..+|..|.+-+++ .+|..+|-.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~----------~~A~~H~i~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV----------YEAERYFMLGTHDSMIKYVDLLWD 174 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH----------HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHhCCCccHHHHHHHHHH
Confidence 5777888999999999988765333346999999999999997776 555554421
Q ss_pred -HHH---hCCCCHHHHHHHHHH-HHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 68 -ALV---IDPAKHYTLWSLGNA-HTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 68 -AL~---ldP~~~~a~~~LG~a-~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
.-+ -+|...+.+...+.. |...| +...|...|+.-.
T Consensus 175 w~~~~~~~~~~e~dlf~~RaVL~yL~l~-----------n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSRLVFNYLFIS-----------NISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHTT-----------BHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHH
Confidence 112 345556666666664 45666 8888888877654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.24 E-value=1.3 Score=42.70 Aligned_cols=48 Identities=4% Similarity=-0.058 Sum_probs=42.4
Q ss_pred hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH
Q 028992 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA 68 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A 68 (200)
.+.|+-|++.++++...-|.+-..|++|+.+|..+++| +.|+-.+.-+
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~----------e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY----------EKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH----------HHHHHHHhcC
Confidence 35789999999999999999999999999999999999 7777655543
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.66 E-value=3.6 Score=37.59 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA 113 (200)
++|.+..+ ..++...|-.||..+...| +++.|+.||+++
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~-----------~~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRF-----------NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcC-----------CHHHHHHHHHHc
Confidence 66665432 3467788889999999988 999999999997
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.74 E-value=3.8 Score=32.51 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
+.|.+..++. ++...|-.||.+-+.+| +++-|..||+++=+.
T Consensus 22 ~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~g-----------n~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 22 DAALDEAKKL-----NDSITWERLIQEALAQG-----------NASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHHH-----CCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHh-----CCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHhCCH
Confidence 8898887664 67788889999999999 999999999986444
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.63 E-value=4.7 Score=35.05 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=45.3
Q ss_pred HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH
Q 028992 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (200)
Q Consensus 9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ 70 (200)
.+++.+++++..+++.+..+|.+-..+..+-.+|...|+. .+|+..|+++-+
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~----------~~Al~~y~~~r~ 233 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQ----------SDALGAYRRVKT 233 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999888 888888776543
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.86 E-value=2.6 Score=37.25 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=57.2
Q ss_pred HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Q 028992 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPAKHYTLWSLGNAH 86 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~~~~a~~~LG~a~ 86 (200)
.+..+++.++.+++-......-..++..+|..+++.|++ ++|+++|.++... .-...+.++.+-.++
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~----------~~A~~~~~~~~~~~~~~~~kid~~l~~irl~ 178 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDK----------DNAEKTLGKSLSKAISTGAKIDVMLTIARLG 178 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCC----------TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 345566666666553333344455778899999998888 7888888877754 223446666666666
Q ss_pred HhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 87 TSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
...+ ++..+..+..||-..
T Consensus 179 l~~~-----------d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 179 FFYN-----------DQLYVKEKLEAVNSM 197 (429)
T ss_dssp HHHT-----------CHHHHHHHHHHHHHH
T ss_pred HHhc-----------cHHHHHHHHHHHHHh
Confidence 6666 788888777777544
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=74.76 E-value=30 Score=28.09 Aligned_cols=96 Identities=10% Similarity=0.071 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
-|..++-...++..|...|.+ ..++-.+ .+-+-..+.+.-..||..+. +|.+|+
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY----------~R~Lf~L-----~~lNT~Ts~YYk~LCy~klK-----------dYkkA~ 82 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEY----------TRALFHL-----HKLNTCTSKYYESLCYKKKK-----------DYKKAI 82 (242)
T ss_dssp C----CTHHHHHHHHHHTTCH----------HHHHHHH-----HTCCBHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred ccCChHHHhhhhhhhhhcchH----------hHHHHHH-----HhcchHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 355557778889999988887 6555433 34566777788888998877 999999
Q ss_pred HHHHHHH----HhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992 108 ECFQRAV----DEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT 149 (200)
Q Consensus 108 ~~fqkAl----~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~ 149 (200)
.+.++.+ +.||+-..=-.-.-++|.+-|.+.++---+..|-+
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g 128 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG 128 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc
Confidence 9999999 45677666555566788888888888766665554
No 250
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.38 E-value=6.8 Score=27.57 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 53 DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 53 ~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
....+++.|+..+.+|++.|-. | +..+|...|.+|+++|..++...|+..
T Consensus 7 ~~~~~l~~Ai~lv~~Ave~D~~---------------g----~y~eAl~~Y~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 7 GQDSDSTAAVAVLKRAVELDAE---------------S----RYQQALVCYQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHT---------------T----CHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred cchHHHHHHHHHHHHHHHHHHh---------------C----CHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3456789999999999777322 2 112222245556666666666666654
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.06 E-value=8.1 Score=35.71 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCcccCChHHhhcCHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------HYTLWSLGNAHTSCGFLTADLSEAKGDFD 104 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------~~a~~~LG~a~~~~G~l~~~~~~a~~~~d 104 (200)
+..++.+=..|+..+.+ +.|.....++. .|.. ...+|.+|.++..++ +|.
T Consensus 231 a~l~nllLRnYL~~~~y----------~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~-----------~Y~ 287 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEV----------DSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQL-----------DYS 287 (523)
T ss_dssp HHHHHHHHHHHHHSSCS----------TTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTT-----------CHH
T ss_pred HHHHHHHHHHHHccCcH----------HHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhc-----------cHH
Confidence 34555555666666666 78888888774 4433 345678999999988 999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 028992 105 KASECFQRAVDEEPTNE 121 (200)
Q Consensus 105 ~A~~~fqkAl~l~P~~~ 121 (200)
+|.+++..|++.-|.+.
T Consensus 288 eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 288 TANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHhCCcch
Confidence 99999999999888653
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.23 E-value=20 Score=35.59 Aligned_cols=75 Identities=12% Similarity=-0.063 Sum_probs=54.4
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-h--C--------------------CCCHHHHH
Q 028992 24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-I--D--------------------PAKHYTLW 80 (200)
Q Consensus 24 a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-l--d--------------------P~~~~a~~ 80 (200)
....-|.++-..+.+|.+++..|++ ++|..+|++|-. + + ...+..|.
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~----------~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~ 903 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEA----------VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYL 903 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHH
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHH
Confidence 3456688888889999999999998 999999988732 1 1 11223344
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
.+...+...+ .++-++++-+.|++..+.
T Consensus 904 hv~~LFe~~~-----------~~~~vi~fa~lAi~~~~~ 931 (1139)
T 4fhn_B 904 HLSKKLFEES-----------AYIDALEFSLLADASKET 931 (1139)
T ss_dssp HHHHHHHHTS-----------CCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhccC
Confidence 4555566666 899999999999987643
No 253
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=71.17 E-value=27 Score=28.84 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHH-hcCcccCChHHhhcCHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTL---WSLGNAHT-SCGFLTADLSEAKGDFDK 105 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~---~~LG~a~~-~~G~l~~~~~~a~~~~d~ 105 (200)
+-..|.-+..+..|..|.+-+...+.|...|++|+. +.|.||--+ .|...-|+ .++ +.++
T Consensus 126 ~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln-----------~~~~ 194 (236)
T 3iqu_A 126 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIAN-----------SPEE 194 (236)
T ss_dssp HHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSS-----------CHHH
T ss_pred HHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcC-----------CHHH
Confidence 345788888888888888777778899999998875 578887422 23333333 344 8899
Q ss_pred HHHHHHHHHHh
Q 028992 106 ASECFQRAVDE 116 (200)
Q Consensus 106 A~~~fqkAl~l 116 (200)
|...-++|++.
T Consensus 195 Ac~lAk~Afd~ 205 (236)
T 3iqu_A 195 AISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776643
No 254
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=71.08 E-value=6.3 Score=27.25 Aligned_cols=17 Identities=12% Similarity=-0.164 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHHHHHh
Q 028992 55 KKIINEAISKFEEALVI 71 (200)
Q Consensus 55 ~~~~~eAi~~le~AL~l 71 (200)
...++.|++...+|++.
T Consensus 13 ~~~~~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34568899988888766
No 255
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=70.79 E-value=7.9 Score=26.60 Aligned_cols=15 Identities=13% Similarity=-0.170 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHHHh
Q 028992 57 IINEAISKFEEALVI 71 (200)
Q Consensus 57 ~~~eAi~~le~AL~l 71 (200)
+++.|++...+|++.
T Consensus 7 ~~~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 7 LEDMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357888888888766
No 256
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=69.19 E-value=13 Score=33.80 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105 (200)
Q Consensus 31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~ 105 (200)
.|-++.+||.+--. .....- ..+++.|++|+.. +-.+..-|-++|..+...+ +|.+
T Consensus 261 YPmALgnLgDLEei-~pt~gr-------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~-----------~~~e 321 (489)
T 4gq4_A 261 YPMALGNLADLEEL-EPTPGR-------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNR-----------NVRE 321 (489)
T ss_dssp CHHHHHHHHHHHHH-SCCTTS-------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTT-----------CHHH
T ss_pred cchhhhcccCHhhc-CCCCCC-------CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhh-----------hHHH
Confidence 45666666665422 111011 2345555555553 4556667778899999988 9999
Q ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHhC
Q 028992 106 ASECFQRAVDEE-------PTNELYQKSLEVS 130 (200)
Q Consensus 106 A~~~fqkAl~l~-------P~~~~y~kAle~~ 130 (200)
|+.++-.|-+.= -+.+.|+.-+++.
T Consensus 322 Al~~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 322 ALQAWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 999999987652 2223777666664
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.16 E-value=23 Score=33.09 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCC
Q 028992 16 HNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTAD 95 (200)
Q Consensus 16 ~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~ 95 (200)
++...+.+..... .+.+.....+..-+..++. +.|...|++.-.-.++.+.+.|-+|.++..+|
T Consensus 270 ~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~----------~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g----- 333 (618)
T 1qsa_A 270 EQAKWRDDAIMRS-QSTSLIERRVRMALGTGDR----------RGLNTWLARLPMEAKEKDEWRYWQADLLLERG----- 333 (618)
T ss_dssp HHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCH----------HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHhccccC-CChHHHHHHHHHHHHCCCH----------HHHHHHHHHccccccccHhHHHHHHHHHHHcC-----
Confidence 3444444444333 3333333333334455666 88888887755544467888999999999988
Q ss_pred hHHhhcCHHHHHHHHHHHHH
Q 028992 96 LSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 96 ~~~a~~~~d~A~~~fqkAl~ 115 (200)
+.++|..+|+++..
T Consensus 334 ------~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 334 ------REAEAKEILHQLMQ 347 (618)
T ss_dssp ------CHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHhc
Confidence 99999999999986
No 258
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=65.14 E-value=44 Score=26.10 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 64 ~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
.+...+.-+|-+++.++.+|++|...| +..+|.+...+|.+.-
T Consensus 113 i~~~~l~n~~~~~~~l~kia~Ay~Klg-----------~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 113 IGREILKNNEVSASILVAIANALRRVG-----------DERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHC--CCSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHhh
Confidence 344445667778999999999999999 9999999999998753
No 259
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=64.33 E-value=11 Score=27.03 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~ 122 (200)
..+|..+...| +++.|+.+|-+|+..-|.=..
T Consensus 24 V~lGE~L~~~g-----------~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQG-----------DYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHT-----------CHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCC-----------CHHHHHHHHHHHHHHcCCHHH
Confidence 35889888988 999999999999999887653
No 260
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=62.77 E-value=27 Score=31.24 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC-------CHHHHHHHH
Q 028992 61 AISKFEEALVI-----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-------NELYQKSLE 128 (200)
Q Consensus 61 Ai~~le~AL~l-----dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~-------~~~y~kAle 128 (200)
++..|.+|+.. +-.+..-|.++|..|+..+ ++.+|+.++-.|-+.=-. .+.|+.-++
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~-----------~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 344 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKK-----------KYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHE 344 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcc-----------hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 55666666654 4556677889999999988 999999999998765322 248888888
Q ss_pred hCCCChHHHHHHHHH
Q 028992 129 VSTKAPELHMELHKH 143 (200)
Q Consensus 129 ~~~k~~e~~~~l~~~ 143 (200)
+. -++-+++-+-
T Consensus 345 IA---neliP~~~k~ 356 (472)
T 3re2_A 345 IA---NDLIPNILKD 356 (472)
T ss_dssp HH---HTHHHHHHHH
T ss_pred HH---HHHhhHHHHh
Confidence 76 3444555553
No 261
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.26 E-value=15 Score=24.91 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..+|..+...| ++++|+.+|-+|+..-|.=.
T Consensus 21 V~~GE~L~~~g-----------~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQG-----------DYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTT-----------CHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCC-----------CHHHHHHHHHHHHHHcCCHH
Confidence 35899999988 99999999999999988765
No 262
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=62.01 E-value=26 Score=28.82 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHH-hcCcccCChHHhhcCHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTL---WSLGNAHT-SCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~---~~LG~a~~-~~G~l~~~~~~a~~~~d~A 106 (200)
-..|.-+..+..|..|.+-+...+.|...|++|+. +-|.+|--+ .|...-|+ .++ +.++|
T Consensus 124 KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~-----------~~~~A 192 (234)
T 2br9_A 124 KMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILN-----------SPDRA 192 (234)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSC-----------CHHHH
T ss_pred HHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcC-----------CHHHH
Confidence 35677788888887777777778899999999885 578887421 22233232 245 89999
Q ss_pred HHHHHHHHHh
Q 028992 107 SECFQRAVDE 116 (200)
Q Consensus 107 ~~~fqkAl~l 116 (200)
...-++|++.
T Consensus 193 ~~lAk~afd~ 202 (234)
T 2br9_A 193 CRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 263
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=62.01 E-value=16 Score=24.89 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=12.2
Q ss_pred ccHHHHHHHHHHHHHh
Q 028992 56 KIINEAISKFEEALVI 71 (200)
Q Consensus 56 ~~~~eAi~~le~AL~l 71 (200)
.+++.|+....+|++.
T Consensus 8 ~~l~~A~~l~~~Av~~ 23 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDL 23 (85)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578899888888744
No 264
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=61.36 E-value=45 Score=27.71 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~A 106 (200)
+-..|.-+..+..|..|.+.+...+.|...|++|+. +.|.+|--+ .|...-|+. ..++.++|
T Consensus 124 ~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYE----------Iln~~~~A 193 (248)
T 3uzd_A 124 LKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYE----------IQNAPEQA 193 (248)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----------TSCCHHHH
T ss_pred HHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHH----------HcCCHHHH
Confidence 345788888888888887777778899999998875 578887422 223333222 23388998
Q ss_pred HHHHHHHHHh
Q 028992 107 SECFQRAVDE 116 (200)
Q Consensus 107 ~~~fqkAl~l 116 (200)
...-++|++.
T Consensus 194 c~lAk~Afd~ 203 (248)
T 3uzd_A 194 CHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777653
No 265
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=61.16 E-value=25 Score=29.50 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALV----IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~----ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq 111 (200)
-..|.-+..+..|..|.+-+...+.|...|++|+. +-|.+|- .||.++...=| ..+..++.++|...-+
T Consensus 150 KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPi---rLGLaLNfSVF----yYEiln~~~~Ac~lAk 222 (260)
T 2npm_A 150 KMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPI---RLGLALNFSVF----HYEILNEPRAAIDMAK 222 (260)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHH---HHHHHHHHHHH----HHHTSCCHHHHHHHHH
T ss_pred HHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHH----HHHHcCCHHHHHHHHH
Confidence 34677888888888787777788999999999996 5677774 23443321000 0122339999998888
Q ss_pred HHHHh
Q 028992 112 RAVDE 116 (200)
Q Consensus 112 kAl~l 116 (200)
+|++.
T Consensus 223 ~Afd~ 227 (260)
T 2npm_A 223 EAFEM 227 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 266
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.94 E-value=11 Score=27.02 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL 69 (200)
+..+.+.+..++..|+| ++||++.++|.
T Consensus 15 AH~~~RrAe~ll~~gky----------deAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKY----------EEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCH----------HHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCH----------HHHHHHHHHHH
Confidence 56678899999999998 88888777654
No 267
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=60.84 E-value=41 Score=26.11 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--H----HHHHH-HHHHHHhcCcccCChHHhhcCHHHHH
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--H----YTLWS-LGNAHTSCGFLTADLSEAKGDFDKAS 107 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--~----~a~~~-LG~a~~~~G~l~~~~~~a~~~~d~A~ 107 (200)
-+.-|..++..|+| =+|-+.||.+-+-.|.. . ..+.. ++.+++... ++|..-|.
T Consensus 35 ~~~~~i~lFn~g~y----------feaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~---------rgN~~GA~ 95 (161)
T 2ijq_A 35 AVVHGVRLYNSGEF----------HESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFD---------FEDDDGMR 95 (161)
T ss_dssp HHHHHHHHHHTTCH----------HHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHH---------HCCHHHHH
T ss_pred HHHHHHHHHhCCCc----------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH---------hCCHHHHH
Confidence 45677888888888 99999999999887665 2 23334 444444332 44999999
Q ss_pred HHHHHHHH
Q 028992 108 ECFQRAVD 115 (200)
Q Consensus 108 ~~fqkAl~ 115 (200)
..+++|+.
T Consensus 96 ~ll~~Al~ 103 (161)
T 2ijq_A 96 SLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 268
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=60.73 E-value=30 Score=29.00 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHH-hcCcccCChHHhhcCHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTL---WSLGNAHT-SCGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~---~~LG~a~~-~~G~l~~~~~~a~~~~d~A 106 (200)
-..|.-+..+..|..+.+-+...+.|...|++|+. +-|.+|--+ .|...-|+ .++ +.++|
T Consensus 129 KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln-----------~~~~A 197 (260)
T 1o9d_A 129 KMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILN-----------SPDRA 197 (260)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSC-----------CHHHH
T ss_pred HHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHcc-----------CHHHH
Confidence 34677888888888887777778899999999885 578887421 22333333 245 89999
Q ss_pred HHHHHHHHHh
Q 028992 107 SECFQRAVDE 116 (200)
Q Consensus 107 ~~~fqkAl~l 116 (200)
...-++|++.
T Consensus 198 c~lAk~Afd~ 207 (260)
T 1o9d_A 198 CNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 269
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=59.55 E-value=28 Score=29.21 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f 110 (200)
-..|.-+..+..|..|.+-+...+.|...|++|+. +.|.+|-- ||.++...=| ..+..++.++|...-
T Consensus 150 KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPir---LGLaLNfSVF----yYEIln~p~~Ac~LA 222 (261)
T 3ubw_A 150 KMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIR---LGLALNFSVF----YYEILNSPDRACRLA 222 (261)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHH----HHHTSCCHHHHHHHH
T ss_pred HhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH---HHHHHHHHHH----HHHHcCCHHHHHHHH
Confidence 35788888888888887777778899999998875 57888742 3333321000 112233899988887
Q ss_pred HHHHHh
Q 028992 111 QRAVDE 116 (200)
Q Consensus 111 qkAl~l 116 (200)
++|++.
T Consensus 223 k~AFd~ 228 (261)
T 3ubw_A 223 KAAFDD 228 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.70 E-value=14 Score=27.10 Aligned_cols=15 Identities=20% Similarity=0.065 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHHh
Q 028992 57 IINEAISKFEEALVI 71 (200)
Q Consensus 57 ~~~eAi~~le~AL~l 71 (200)
+++.|+..+.+|++.
T Consensus 14 ~l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 14 NLQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999744
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.38 E-value=28 Score=30.50 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=63.8
Q ss_pred HHHhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--CCCHH----H
Q 028992 8 FDRLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHY----T 78 (200)
Q Consensus 8 ~~~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--P~~~~----a 78 (200)
+.+.+.++.|.+.+.++...... -.+.+..+-.+.+..+++ ..+...+++|..+- ..+++ .
T Consensus 141 ~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~----------~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 141 YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQ----------LYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 45677888899999988875433 456666777777777777 88888888876552 22222 2
Q ss_pred HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
..+-|.++...+ +|.+|..+|-.++.--.
T Consensus 211 k~~~gl~~l~~r-----------~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVR-----------NFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTS-----------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhC-----------hHHHHHHHHHHHhccCC
Confidence 345677777777 99999999999876543
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.28 E-value=11 Score=27.08 Aligned_cols=41 Identities=15% Similarity=0.453 Sum_probs=26.9
Q ss_pred HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHH
Q 028992 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMEL 140 (200)
Q Consensus 82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l 140 (200)
.+..+...| .||+||+|.++|... ...|+.+. +.++++..|
T Consensus 21 rAe~ll~~g-----------kydeAIech~kAa~y------L~eAmklt-qs~qa~~SL 61 (97)
T 2crb_A 21 RADRLLAAG-----------KYEEAISCHRKATTY------LSEAMKLT-ESEQAHLSL 61 (97)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHH------HHHHHTTC-CCHHHHHHH
T ss_pred HHHHHHhcC-----------CHHHHHHHHHHHHHH------HHHHHHhh-ccHHHHHHH
Confidence 455566666 999999999998753 44455554 445554443
No 273
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=56.46 E-value=20 Score=30.83 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc----------CCccc----ccccccHHHHHHHHHHHHHhCCC---
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS----------QFESV----SDSKKIINEAISKFEEALVIDPA--- 74 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~----------~~~~~----~~~~~~~~eAi~~le~AL~ldP~--- 74 (200)
.||+.|++.++--++..|++.......+.+++..- .-... .-.++|+++|+.+|+..-+-.|.
T Consensus 99 eFFDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~e~~t 178 (346)
T 3qtm_A 99 SYIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEYFD 178 (346)
T ss_dssp HHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHHHHHHHHHHHSTTSCCCT
T ss_pred HHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHhhChhhcc
Confidence 38999999999999999999999999998887621 11011 12457999999999944333222
Q ss_pred -----CHHHHHHHHHHHHhcC
Q 028992 75 -----KHYTLWSLGNAHTSCG 90 (200)
Q Consensus 75 -----~~~a~~~LG~a~~~~G 90 (200)
...-++.|...+.+.|
T Consensus 179 ~~tld~~rpl~~lS~yl~~~~ 199 (346)
T 3qtm_A 179 ALTPDSLRPLYILSSYLFQFG 199 (346)
T ss_dssp TCCTTTTTTHHHHHHHHHHTG
T ss_pred ccccchhhHHHHHHHHHHHhc
Confidence 2234455666655544
No 274
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=54.67 E-value=1.3e+02 Score=30.27 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=71.6
Q ss_pred HHHHhchHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHH
Q 028992 7 DFDRLLLSEHNRKTAEANYA----KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLW 80 (200)
Q Consensus 7 ~~~~l~~fe~A~~~~e~a~~----~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~ 80 (200)
-+=|.+..++|.+.++.--+ --.-|...++.+=..|++.|++ ++|.+.|++-.+. .| |.-+|.
T Consensus 136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~----------~eA~~Lf~eM~~~G~~P-DvvTYn 204 (1134)
T 3spa_A 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF----------KELVYVLFMVKDAGLTP-DLLSYA 204 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCCC-cHHHHH
Confidence 45577889999999865332 2244788899999999999888 9999999987754 56 456667
Q ss_pred HHHHHHHhcCcccCChHHhhcC-HHHHHHHHHHHHHh--CCCCHHHH
Q 028992 81 SLGNAHTSCGFLTADLSEAKGD-FDKASECFQRAVDE--EPTNELYQ 124 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~-~d~A~~~fqkAl~l--~P~~~~y~ 124 (200)
.|=+++...| + .++|.++|++..+. .||.-.|.
T Consensus 205 tLI~glcK~G-----------~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 205 AALQCMGRQD-----------QDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHT-----------CCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHhCC-----------CcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 7777788877 7 57888999988865 46665444
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=54.02 E-value=20 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~ 121 (200)
..+|.+|..++..+ +|.+|.++|..|++.-|...
T Consensus 15 ~Y~YYlGr~~~~~~-----------~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDS-----------DFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHh-----------CHHHHHHHHHHHHHHCCHhH
Confidence 45688999999988 99999999999999987653
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.79 E-value=88 Score=27.45 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHhh--CCCCH----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC---CCCH----HH
Q 028992 12 LLSEHNRKTAEANYAK--DPLDA----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID---PAKH----YT 78 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~--~P~d~----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld---P~~~----~a 78 (200)
+.|.+|.+.+.+.... ..+|. +++..-..++..++++ ..+...|.+|..+. +.+| ..
T Consensus 113 ~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~----------~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 113 ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL----------PKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 4667777776666642 12222 2333444455555555 78888888776553 2333 34
Q ss_pred HHHHHHHHH-hcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992 79 LWSLGNAHT-SCGFLTADLSEAKGDFDKASECFQRAVD 115 (200)
Q Consensus 79 ~~~LG~a~~-~~G~l~~~~~~a~~~~d~A~~~fqkAl~ 115 (200)
..+-|..+. ..+ +|.+|..+|-.+++
T Consensus 183 ~~~~Gi~~l~~~r-----------dyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGILHAADER-----------DFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHTTS-----------CHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhcc-----------CHHHHHHHHHHHHh
Confidence 467888888 777 99999999999973
No 277
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.57 E-value=25 Score=24.27 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 028992 59 NEAISKFEEALVI 71 (200)
Q Consensus 59 ~eAi~~le~AL~l 71 (200)
..|+....+|++.
T Consensus 14 ~~A~~lv~~Ave~ 26 (86)
T 4a5x_A 14 TAAATVLKRAVEL 26 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666655
No 278
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=53.45 E-value=26 Score=30.48 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-----Cc-----c-c---ccccccHHHHHHHHHHHHHhCCC---
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-----FE-----S-V---SDSKKIINEAISKFEEALVIDPA--- 74 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-----~~-----~-~---~~~~~~~~eAi~~le~AL~ldP~--- 74 (200)
.||+.|++.++--++..|++.......+.+++..-+ .. . . .-..+|+++|+.+|+..-+-.|.
T Consensus 146 efFDaALERielGLe~~p~s~~L~la~sKIllqrI~~v~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~e~~t 225 (393)
T 3msv_A 146 SYIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEYFD 225 (393)
T ss_dssp HHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHHHHHHHSTTSCCCT
T ss_pred HHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHhhChhhcc
Confidence 389999999999999999999999999988876211 00 0 0 12457999999999944333232
Q ss_pred -----CHHHHHHHHHHHHhcC
Q 028992 75 -----KHYTLWSLGNAHTSCG 90 (200)
Q Consensus 75 -----~~~a~~~LG~a~~~~G 90 (200)
...-++.|...+.+.|
T Consensus 226 ~~tld~~rpl~~lS~yl~~~~ 246 (393)
T 3msv_A 226 ALTPDSLRPLYILSSYLFQFG 246 (393)
T ss_dssp TCCTGGGTTHHHHHHHHHHTG
T ss_pred ccccchhhHHHHHHHHHHHhc
Confidence 1223455555555544
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.13 E-value=49 Score=32.25 Aligned_cols=37 Identities=11% Similarity=-0.098 Sum_probs=31.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH
Q 028992 23 ANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (200)
Q Consensus 23 ~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL 69 (200)
.....-|.++-.-+.+|.+++..|++ ++|..+|++|-
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~~ge~----------~~A~~~F~kAA 867 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLKSKEA----------VKAVRCFKTTS 867 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHHTTCH----------HHHHHHHHTCC
T ss_pred HHHhhcCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHh
Confidence 34566788888889999999999999 99999998765
No 280
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=51.09 E-value=23 Score=30.44 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHH---HHhc---CCccccc--ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----------
Q 028992 30 LDADNLTRWGEAL---LELS---QFESVSD--SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF---------- 91 (200)
Q Consensus 30 ~d~~~l~~lG~al---~~l~---~~~~~~~--~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~---------- 91 (200)
.....+...|.+| .++. .|+...+ ...-++.|++-.+--++..|++....+-++.++...-+
T Consensus 65 Lpd~FhAIYAlALl~lSELa~~a~Fk~ede~~V~eFFDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~~~~s~eE 144 (346)
T 3qtm_A 65 LPKDFHAAYSSALLAVSELFEIAQKRLKETNTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEE 144 (346)
T ss_dssp SCHHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHhHHHhhHHhhccCchhhhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhccccc
Confidence 4667788888888 6666 6665544 33457899999999999999999988888888765322
Q ss_pred -c--cCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 92 -L--TADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 92 -l--~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+ .|-..-|+...++|.+||++.-+..|..
T Consensus 145 ~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~e~ 176 (346)
T 3qtm_A 145 SLANIPVTQLVNPYIEKAIQYLRPLAQDSTEY 176 (346)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHhhChhh
Confidence 2 2556677888999999999544444443
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.82 E-value=29 Score=34.37 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=32.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 67 ~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
+.+..-|.++-.-|.+|.++...| ++++|..||++|-
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~g-----------e~~~A~~~F~kaa 869 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSK-----------EAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHTCC
T ss_pred HHhhhccCCcHHHHHHHHHHHhcC-----------CHHHHHHHHHHHh
Confidence 345667888888899999999999 9999999999984
No 282
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=50.33 E-value=25 Score=29.68 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----h--CCCCHHHH---HHHHHHHHhcCcccCChHHhhcCHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----I--DPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDK 105 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----l--dP~~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~ 105 (200)
-..|..+..+..|..+.+-+...+.|...|++|++ + .|.+|--+ .|...-|+ +..++.++
T Consensus 146 KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyY----------EIln~p~~ 215 (268)
T 3efz_A 146 KLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKY----------DLLGNPEG 215 (268)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHH----------TTTCCHHH
T ss_pred hccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH----------HHcCCHHH
Confidence 34588888899998888777778889999998875 3 57777421 22333333 22339999
Q ss_pred HHHHHHHHHHh
Q 028992 106 ASECFQRAVDE 116 (200)
Q Consensus 106 A~~~fqkAl~l 116 (200)
|...-++|++.
T Consensus 216 Ac~lAk~AFde 226 (268)
T 3efz_A 216 AMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999876
No 283
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=47.90 E-value=30 Score=32.34 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G 90 (200)
+.+..|.+.++.++..||++.++...++.+|..+|
T Consensus 463 g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 463 GEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 33499999999999999999999999999999988
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.37 E-value=18 Score=35.38 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992 66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (200)
Q Consensus 66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl 114 (200)
.+.+..=|.++-.-|.+|.+|...| ++++|..||+||-
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~~g-----------e~~~A~~~F~kAA 867 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLKSK-----------EAVKAVRCFKTTS 867 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHTT-----------CHHHHHHHHHTCC
T ss_pred HHHHhhcCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHh
Confidence 4456777888888899999999999 9999999999986
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.48 E-value=45 Score=29.37 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI----DPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l----dP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~ 109 (200)
+++|..|+..|+| .+|...+.+.++- |.. ..+++..-..+|+.++ |+.++..+
T Consensus 103 ~kL~~l~~~~~~y----------~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~-----------n~~k~k~~ 161 (394)
T 3txn_A 103 ARLIALYFDTALY----------TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS-----------NLPKARAA 161 (394)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred HHHHHHHHHhhhH----------HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc-----------cHHHHHHH
Confidence 4889999998888 9998888777653 322 2255566677788888 99999999
Q ss_pred HHHHHHhC
Q 028992 110 FQRAVDEE 117 (200)
Q Consensus 110 fqkAl~l~ 117 (200)
+.+|....
T Consensus 162 l~~a~~~~ 169 (394)
T 3txn_A 162 LTSARTTA 169 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99987553
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=46.39 E-value=37 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a 78 (200)
..+|..|+..|.+ +.|+.+|-+|+.+-|+=.+.
T Consensus 24 V~lGE~L~~~g~~----------e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDY----------EKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCH----------HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCH----------HHHHHHHHHHHHHcCCHHHH
Confidence 4577777777766 88888888888877765553
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.98 E-value=95 Score=27.85 Aligned_cols=92 Identities=8% Similarity=-0.009 Sum_probs=55.6
Q ss_pred hchHHHHHHHHHHHHhhCCCCHH----------------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH-----H
Q 028992 11 LLLSEHNRKTAEANYAKDPLDAD----------------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEA-----L 69 (200)
Q Consensus 11 l~~fe~A~~~~e~a~~~~P~d~~----------------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A-----L 69 (200)
-.+.|++-....+++..--+|-. ..+++-.+|+++++.+.+ +.-+..++.. +
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lc-------kni~k~i~~~~~~p~~ 211 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLC-------SNIFKNFQPKSMLAHF 211 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTH-------HHHHHTHHHHCCCSCG
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHH-------HHHHHHhccCCCCcCh
Confidence 34778888888888876333221 112233455666666322 2222222221 2
Q ss_pred HhCCCC--HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-CCCC
Q 028992 70 VIDPAK--HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-EPTN 120 (200)
Q Consensus 70 ~ldP~~--~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-~P~~ 120 (200)
..-|.. ...+|.+|..+...+ +|.+|.+++..|++. -|.+
T Consensus 212 ~~~p~~q~v~Y~YYlGr~~~~~~-----------~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 212 NEYQLDQQIEYRYLLGRYYLLNS-----------QVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred hhCCccceEeeeHHHHHHHHHHc-----------cHHHHHHHHHHHHHhcCCcc
Confidence 223332 346688999999988 999999999999998 6654
No 288
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=41.75 E-value=57 Score=21.98 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~ 81 (200)
..+|..|+..|.+ ++|+.+|-+|+++-|+=.+.+-.
T Consensus 21 V~~GE~L~~~g~~----------~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 21 IQLGEELLAQGDY----------EKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHCCCH----------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4678888887776 89999999999998887765433
No 289
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=41.17 E-value=35 Score=29.67 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHH---HHhc---CCccccc--ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----------
Q 028992 30 LDADNLTRWGEAL---LELS---QFESVSD--SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF---------- 91 (200)
Q Consensus 30 ~d~~~l~~lG~al---~~l~---~~~~~~~--~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~---------- 91 (200)
.....|...+.+| .++. .|+...+ ...-++.|++-.+--++..|++....+.++.++...-+
T Consensus 112 Lp~~FhAIYAlALl~lSELa~~a~Fk~ede~~V~efFDaALERielGLe~~p~s~~L~la~sKIllqrI~~v~~~~s~eE 191 (393)
T 3msv_A 112 LPKDFHAAYSSALLAVSELFEIAQKRLKETNTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEE 191 (393)
T ss_dssp SCHHHHHHHHHHHHHHHHTHHHHGGGSCSSCCHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHhccCchhhhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhccccc
Confidence 4667788888888 6666 6655544 33457899999999999999999988888888765322
Q ss_pred -c--cCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992 92 -L--TADLSEAKGDFDKASECFQRAVDEEPTN 120 (200)
Q Consensus 92 -l--~~~~~~a~~~~d~A~~~fqkAl~l~P~~ 120 (200)
+ .|-..-|+....+|.+||+..-+..|..
T Consensus 192 ~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~e~ 223 (393)
T 3msv_A 192 SLANIPVTQLVNPYIEKAIQYLRPLAQDSTEY 223 (393)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHhhChhh
Confidence 2 2556677888999999999544444443
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.02 E-value=1.8e+02 Score=25.37 Aligned_cols=86 Identities=7% Similarity=-0.062 Sum_probs=53.8
Q ss_pred HhchHHHHHHHHHHHHh----hCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH---hCCCCH----
Q 028992 10 RLLLSEHNRKTAEANYA----KDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---IDPAKH---- 76 (200)
Q Consensus 10 ~l~~fe~A~~~~e~a~~----~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~---ldP~~~---- 76 (200)
..+.+.+|.+....... .++. -.+.+......++..+++ ..|...+.++.. -++..+
T Consensus 149 ~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~----------~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 149 EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY----------SQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34556666666555432 1111 134555555666666666 888888887642 244444
Q ss_pred HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
..+.+.|..+...+ +|.+|..+|..+++-
T Consensus 219 ~~~~~~~~~~~~e~-----------~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKR-----------EYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhc
Confidence 34567888888766 999999999999864
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.54 E-value=30 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
.+|.=|...| +||.|+.||+.+++.
T Consensus 17 k~ARe~Al~G-----------nYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLG-----------NYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHT-----------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----------ChHHHHHHHHHHHHH
Confidence 4566677777 999999999999875
No 292
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=35.52 E-value=1.8e+02 Score=23.71 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHh-cCcccCChHHhhcCHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKH---YTLWSLGNAHTS-CGFLTADLSEAKGDFDKA 106 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~~~---~a~~~LG~a~~~-~G~l~~~~~~a~~~~d~A 106 (200)
-..|.-+..+..|..|. .+.|...|++|+.+ .|.+| ....|...-|+. ++ +.++|
T Consensus 124 KMKGDYyRYlAE~~~g~-----~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln-----------~p~~A 187 (227)
T 2o8p_A 124 KVKSDISRYKLEFGLCS-----LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYG-----------EKKQV 187 (227)
T ss_dssp HHHHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSS-----------CHHHH
T ss_pred HHhhhHHHHHHHHcccc-----HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHcc-----------CHHHH
Confidence 45566777777775554 68899999988864 45554 444455555443 45 99999
Q ss_pred HHHHHHHHHh
Q 028992 107 SECFQRAVDE 116 (200)
Q Consensus 107 ~~~fqkAl~l 116 (200)
...-++|++.
T Consensus 188 c~lAk~Afd~ 197 (227)
T 2o8p_A 188 FNMLNSLGKI 197 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999774
No 293
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.09 E-value=30 Score=25.61 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHhC
Q 028992 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-----NELYQKSLEVS 130 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~-----~~~y~kAle~~ 130 (200)
+++|..+..+||.+|-. | ...+|.+.|.+.+.+++++|.+..+ .+.+.+|-.|-
T Consensus 19 h~~AF~~Is~AL~~DE~---------------g----~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq 77 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL---------------G----QKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQ 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHH---------------T----CHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhc---------------C----CHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 48888888999988762 3 2233344666677777777777664 34666666554
No 294
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=34.27 E-value=2.2e+02 Score=28.77 Aligned_cols=73 Identities=14% Similarity=-0.038 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (200)
Q Consensus 34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~ 108 (200)
.++.+=..|++.|+. ++|.+.|++--+ +.| +.-+|..|-..|...| ++++|.+
T Consensus 129 TynaLIdglcK~G~l----------eeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G-----------~~~eA~~ 186 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQL----------PLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQG-----------AFKELVY 186 (1134)
T ss_dssp HHHHHHHHHHHHTCH----------HHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHT-----------CHHHHHH
T ss_pred HHHHHHHHHHhCCCH----------HHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCC-----------CHHHHHH
Confidence 355666677776666 999999976432 345 4567888889999988 9999999
Q ss_pred HHHHHHH--hCCCCHHHHHHHH
Q 028992 109 CFQRAVD--EEPTNELYQKSLE 128 (200)
Q Consensus 109 ~fqkAl~--l~P~~~~y~kAle 128 (200)
.|++-.+ +.||--.|--.+.
T Consensus 187 Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 187 VLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 9999876 4688887776664
No 295
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=34.09 E-value=1.3e+02 Score=27.47 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Q 028992 61 AISKFEEALVI-----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE-------PTNELYQKSLE 128 (200)
Q Consensus 61 Ai~~le~AL~l-----dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~-------P~~~~y~kAle 128 (200)
++..|.+|+.. +-.+..-|.++|..|+..+ ++.+|+.++-.|-+.= -+.+.|+.-+|
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~-----------~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 366 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNR-----------NVREALQAWADTATVIQDYNYCREDEEIYKEFFE 366 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcc-----------hHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 45555555543 4456677788999999988 9999999999987652 22348999888
Q ss_pred hCCCChHHHHHHHHH
Q 028992 129 VSTKAPELHMELHKH 143 (200)
Q Consensus 129 ~~~k~~e~~~~l~~~ 143 (200)
+. -++..++.+.
T Consensus 367 IA---neliP~~~k~ 378 (550)
T 3u84_A 367 VA---NDVIPNLLKE 378 (550)
T ss_dssp HH---HTHHHHHHHH
T ss_pred HH---HHhhhHHHHH
Confidence 86 3444555543
No 296
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=33.00 E-value=20 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.9
Q ss_pred cccccHHHHHHHHHHHHHhCCCCH
Q 028992 53 DSKKIINEAISKFEEALVIDPAKH 76 (200)
Q Consensus 53 ~~~~~~~eAi~~le~AL~ldP~~~ 76 (200)
|...-++-||.|++.|..++|++.
T Consensus 25 D~~ESleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 25 DAQESLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred hHHHHHHHHHHHHHHHcCCCcccc
Confidence 444557999999999999999874
No 297
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=32.75 E-value=7.4 Score=22.11 Aligned_cols=26 Identities=23% Similarity=0.694 Sum_probs=11.1
Q ss_pred hhhhHHHHHHH-HHHHHHHhhcCCCCC
Q 028992 172 DIFGWAILAVG-IVAWVGMANSRIPPP 197 (200)
Q Consensus 172 ~~~g~~~l~~~-~~~~~~~~~~~~~~~ 197 (200)
+|.-|.-++=. .++|+=+|...+|||
T Consensus 4 ~v~~w~~far~a~igw~P~a~~~~p~~ 30 (30)
T 1s6c_B 4 GVAAWLPFARAAAIGWMPVASGPMPAP 30 (30)
T ss_dssp HHHTTHHHHHHHHHTTCC---------
T ss_pred hhhhhcccchhhcccccccccCCCCCC
Confidence 35666666654 667777777666654
No 298
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.25 E-value=84 Score=21.84 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH--HhcCcccCChHHhhcCHHHHHHH
Q 028992 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSLGNAH--TSCGFLTADLSEAKGDFDKASEC 109 (200)
Q Consensus 36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~----a~~~LG~a~--~~~G~l~~~~~~a~~~~d~A~~~ 109 (200)
+.-|..++..|+| =+|-+.+|.+-+-.|.... .+..++.++ ...| |. |...
T Consensus 5 ~~~~~~lfn~g~~----------~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~g-----------n~--a~~l 61 (94)
T 2cwy_A 5 WEEVLGLWRAGRY----------YEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLG-----------RP--GLRN 61 (94)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT-----------CC--CHHH
T ss_pred HHHHHHHHhCCCh----------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcC-----------cH--HHHH
Confidence 3457778887887 9999999999998865322 223333333 3344 66 7777
Q ss_pred HHHHHH
Q 028992 110 FQRAVD 115 (200)
Q Consensus 110 fqkAl~ 115 (200)
+++++.
T Consensus 62 l~~a~~ 67 (94)
T 2cwy_A 62 LRKAEA 67 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 299
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=29.94 E-value=35 Score=20.05 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHhC
Q 028992 102 DFDKASECFQRAVDEE 117 (200)
Q Consensus 102 ~~d~A~~~fqkAl~l~ 117 (200)
-||+|+..|+.|++.+
T Consensus 17 ayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 17 AYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5899999999998764
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.45 E-value=64 Score=24.72 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 59 NEAISKFEEAL--VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 59 ~eAi~~le~AL--~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
.++...|+... .|--+.+.-|-..+..+...| ++.+|...|++.++.+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-----------~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG-----------ELQHASAVLQRGIQNQA 132 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCC
Confidence 45677776655 455666666677888888888 99999999999998753
No 301
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.16 E-value=1.3e+02 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 58 INEAISKFEEALVIDPA--------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~--------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++.-++-|++|+.+=|. ..-|+-.++.+|+..| ++++|+.+.++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~-----------~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHD-----------DNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHhC
Confidence 56777778888876553 4567888999999988 999999999999964
No 302
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.61 E-value=1.1e+02 Score=23.75 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=29.4
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 25 YAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 25 ~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+.-+|-+++.+..+|.||.++|.- .+|-+.+.+|-+-
T Consensus 118 l~n~~~~~~~l~kia~Ay~Klg~~----------r~a~eLl~~AC~k 154 (172)
T 1wy6_A 118 LKNNEVSASILVAIANALRRVGDE----------RDATTLLIEACKK 154 (172)
T ss_dssp C--CCSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT
T ss_pred hccCCCChHHHHHHHHHHHHhcch----------hhHHHHHHHHHHh
Confidence 345677899999999999999987 8888888887553
No 303
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=28.13 E-value=66 Score=24.64 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (200)
Q Consensus 56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~ 119 (200)
..+..|+..++.+...||.-....-.|..++.... +....+..|...++.||.
T Consensus 70 ~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~-----------d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 70 GLIGEAVRALNAGAKYDETVMQLQNELRAALESVQ-----------AIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHcCCCCHH
Confidence 44567777777777788876666667777776644 544455555555556664
No 304
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.27 E-value=1.7e+02 Score=25.87 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 58 INEAISKFEEALVIDPA-----------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~-----------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
++.-++-|++|+..=|. +.-|+-.|+.+|+..| ++++|+.+.++++...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~-----------~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYAR-----------QWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhcC
Confidence 56677778888776543 3457788999999988 9999999999999753
No 305
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=26.29 E-value=34 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.7
Q ss_pred ccccccHHHHHHHHHHHHHhCCCCHH
Q 028992 52 SDSKKIINEAISKFEEALVIDPAKHY 77 (200)
Q Consensus 52 ~~~~~~~~eAi~~le~AL~ldP~~~~ 77 (200)
.|...-++-|+.|++.|..++|++..
T Consensus 29 ~D~~ESLeVAiqCI~~aF~v~~~d~~ 54 (74)
T 2lxb_A 29 EDGADSLNVAMDCISEAFGFEREAVS 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhH
Confidence 34455679999999999999999965
No 306
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.26 E-value=1.4e+02 Score=23.42 Aligned_cols=37 Identities=14% Similarity=-0.060 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (200)
Q Consensus 32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a 78 (200)
..-++.+|..++..+++ .+|.+.|.+|++.-|.....
T Consensus 14 v~Y~YYlGr~~~~~~~y----------~~A~~~L~~A~~~~~~~~~~ 50 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDF----------KQAEEYLSFAFEHCHRSSQK 50 (203)
T ss_dssp HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHHCCHhHHH
Confidence 45678899999988888 99999999999998876543
No 307
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=25.12 E-value=1.3e+02 Score=21.18 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 028992 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS 46 (200)
Q Consensus 12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~ 46 (200)
..+..+++.+..+++.+|+||-.+..+-..+.+.+
T Consensus 30 ~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseyn 64 (92)
T 2g0u_A 30 KDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYN 64 (92)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 45677888888899999999998877766665543
No 308
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.94 E-value=69 Score=23.27 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHH
Q 028992 102 DFDKASECFQRAVD 115 (200)
Q Consensus 102 ~~d~A~~~fqkAl~ 115 (200)
+|++|+.+|+.|++
T Consensus 33 ~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 33 NYEEALQLYQHAVQ 46 (117)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 309
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.34 E-value=1.9e+02 Score=25.25 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992 58 INEAISKFEEALVIDPA--------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~--------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l 116 (200)
++.-++-|++|+.+=|. ..-|+-.++.+|+..| ++++|+.+.++++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~-----------~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKG-----------EYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhc
Confidence 56677778888876553 4567888999999988 999999999999974
No 310
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=23.88 E-value=1.8e+02 Score=21.71 Aligned_cols=54 Identities=9% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (200)
Q Consensus 3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a 78 (200)
+..+-.+|+...|++. +.+||.|+++.-....++ +.-+..++...+.+|+++..
T Consensus 68 L~~~~~~Kl~WLe~vl------~aid~~dp~i~~~~p~Il----------------~~l~~~L~~~~~~~p~~~~~ 121 (139)
T 2vxg_A 68 MTNHNELKQRYLNEAL------LAINMADPITREHAPKVL----------------TELYRNCQQFIKNSPKNSQF 121 (139)
T ss_dssp CTTCCHHHHHHHHHHH------HHCCTTSHHHHHHHHHHH----------------HHHHHHHHHHHHHCTTSTTH
T ss_pred hccCcHHHHHHHHHHH------HHcCCCCchHHHHHHHHH----------------HHHHHHHHHHHhcCCCChHH
Confidence 3333346666666664 678999999888877777 34444555557888887654
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.39 E-value=1.1e+02 Score=23.67 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 59 NEAISKFEEAL--VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 59 ~eAi~~le~AL--~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
.++...|+... .|--..+.-|...+..+-..| +|.+|...|++.++.+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~-----------~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARE-----------NFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcC
Confidence 34556666554 556666777777888888888 9999999999999876
No 312
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=23.23 E-value=1.4e+02 Score=23.84 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992 59 NEAISKFEEAL--VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (200)
Q Consensus 59 ~eAi~~le~AL--~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~ 117 (200)
.++...|+... .|--..+.-|-..+..+...| +|.+|...|++.++.+
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-----------~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ-----------FFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcC
Confidence 57888777665 556666677777888888888 9999999999999875
No 313
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=23.12 E-value=1.6e+02 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992 58 INEAISKFEEALVIDPA--------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (200)
Q Consensus 58 ~~eAi~~le~AL~ldP~--------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P 118 (200)
++.-++-|++|+.+=|. ..-|+-.++.+|+..| ++++|+.+.++++....
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~-----------~~~~A~~~a~~vi~~~~ 233 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMG-----------EYQKAYDAATDVIKNNG 233 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhCCC
Confidence 56677778888876553 4567888999999988 99999999999997643
No 314
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=23.00 E-value=1.5e+02 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (200)
Q Consensus 35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l 71 (200)
+.+|+..-+.-.+. .-|+..+++||++
T Consensus 23 ~aK~AiSAL~feDv----------~tA~~~L~~AL~l 49 (53)
T 2rkl_A 23 LAKYAISALNYEDL----------PTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHTTTCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccH----------HHHHHHHHHHHHH
Confidence 55677666553333 8888888888864
No 315
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=28.02 E-value=18 Score=19.71 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHH
Q 028992 175 GWAILAVGIVAWVG 188 (200)
Q Consensus 175 g~~~l~~~~~~~~~ 188 (200)
||+++++.+-+-+|
T Consensus 3 g~l~iavvlGa~~G 16 (26)
T 2ls4_A 3 GYLCIAVAAGAGTG 16 (26)
Confidence 79999887766655
No 316
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=20.23 E-value=2.2e+02 Score=19.70 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 028992 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELS 46 (200)
Q Consensus 14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~ 46 (200)
.-+++..+..+++.+|.||..+..+=-.+.+.+
T Consensus 26 ~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eys 58 (85)
T 2ca5_A 26 LQGELTLALDKLAKNPSNPQLLAEYQSKLSEYT 58 (85)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456677788889999999998877666555543
Done!