Query 028993
Match_columns 200
No_of_seqs 153 out of 264
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1taf_A TFIID TBP associated fa 100.0 2.2E-29 7.6E-34 181.5 9.1 68 34-101 1-68 (68)
2 1ku5_A HPHA, archaeal histon; 99.6 3E-16 1E-20 111.6 6.7 65 32-98 6-70 (70)
3 3b0c_T CENP-T, centromere prot 99.6 1.7E-15 6E-20 117.4 6.6 90 32-123 7-107 (111)
4 3b0b_B CENP-S, centromere prot 99.5 4.9E-15 1.7E-19 114.8 4.7 59 40-98 25-86 (107)
5 3v9r_A MHF1, uncharacterized p 99.5 1.9E-14 6.6E-19 108.4 5.9 61 37-98 19-79 (90)
6 4dra_A Centromere protein S; D 99.5 2.1E-14 7E-19 112.4 4.4 60 39-98 32-94 (113)
7 3vh5_A CENP-S; histone fold, c 99.3 1.5E-12 5.1E-17 105.1 6.8 60 38-98 27-86 (140)
8 2hue_C Histone H4; mini beta s 99.3 1.6E-12 5.4E-17 95.8 5.7 66 32-99 10-75 (84)
9 1id3_B Histone H4; nucleosome 99.3 3.7E-12 1.3E-16 97.4 7.4 66 32-99 28-93 (102)
10 1tzy_D Histone H4-VI; histone- 99.3 6.7E-12 2.3E-16 95.6 7.7 66 32-99 29-94 (103)
11 2yfw_B Histone H4, H4; cell cy 99.3 5.6E-12 1.9E-16 96.1 7.3 66 32-99 29-94 (103)
12 1taf_B TFIID TBP associated fa 99.2 3.3E-11 1.1E-15 87.0 8.2 64 32-97 6-69 (70)
13 1f1e_A Histone fold protein; a 99.0 6.1E-10 2.1E-14 90.9 7.8 67 32-100 82-148 (154)
14 2ly8_A Budding yeast chaperone 98.9 1.4E-09 4.9E-14 85.8 7.2 57 45-101 58-114 (121)
15 1b67_A Protein (histone HMFA); 98.9 1.9E-09 6.5E-14 75.6 6.9 64 33-98 3-66 (68)
16 2l5a_A Histone H3-like centrom 98.9 1.2E-09 4.2E-14 94.5 6.9 59 41-99 168-226 (235)
17 1f1e_A Histone fold protein; a 98.8 8.5E-09 2.9E-13 84.2 7.8 66 32-99 4-70 (154)
18 2hue_B Histone H3; mini beta s 98.8 2.8E-08 9.6E-13 72.9 8.3 65 37-101 10-75 (77)
19 3nqj_A Histone H3-like centrom 98.7 7.8E-08 2.7E-12 71.3 7.8 65 37-101 10-77 (82)
20 1n1j_A NF-YB; histone-like PAI 98.6 1.1E-07 3.6E-12 70.7 8.0 80 32-114 8-89 (93)
21 3b0c_W CENP-W, centromere prot 98.5 5.3E-07 1.8E-11 64.9 9.0 69 31-101 3-72 (76)
22 3r45_A Histone H3-like centrom 98.5 3.6E-07 1.2E-11 74.9 8.1 65 37-101 84-151 (156)
23 2yfv_A Histone H3-like centrom 98.5 3.6E-07 1.2E-11 69.9 7.6 62 37-98 34-99 (100)
24 1tzy_C Histone H3; histone-fol 98.5 4.8E-07 1.6E-11 72.6 8.0 65 37-101 69-134 (136)
25 3nqu_A Histone H3-like centrom 98.4 4E-07 1.4E-11 73.5 7.1 65 37-101 68-135 (140)
26 2nqb_C Histone H2A; nucleosome 98.3 1E-06 3.5E-11 69.3 7.4 62 37-98 26-88 (123)
27 2f8n_G Core histone macro-H2A. 98.3 1.1E-06 3.7E-11 68.9 6.7 62 37-98 25-87 (120)
28 1tzy_A Histone H2A-IV; histone 98.3 1.5E-06 5.1E-11 68.9 7.3 62 37-98 28-90 (129)
29 2f8n_K Histone H2A type 1; nuc 98.2 2.1E-06 7.2E-11 69.8 7.3 62 37-98 47-109 (149)
30 1id3_C Histone H2A.1; nucleoso 98.2 1.9E-06 6.4E-11 68.5 6.7 62 37-98 28-90 (131)
31 1f66_C Histone H2A.Z; nucleoso 98.2 3.7E-06 1.3E-10 66.6 7.0 62 37-98 30-93 (128)
32 1jfi_B DR1 protein, transcript 98.1 7E-06 2.4E-10 68.5 7.7 80 32-114 15-95 (179)
33 2byk_B Chrac-14; nucleosome sl 98.1 6.5E-06 2.2E-10 64.9 6.9 80 32-115 9-91 (128)
34 1n1j_B NF-YC; histone-like PAI 98.1 7.9E-06 2.7E-10 61.2 6.9 71 32-104 19-90 (97)
35 2jss_A Chimera of histone H2B. 98.0 1.2E-05 4.2E-10 66.9 7.8 63 36-98 107-171 (192)
36 1jfi_A Transcription regulator 97.9 1.4E-05 4.7E-10 60.2 4.5 68 37-104 14-82 (98)
37 2nqb_D Histone H2B; nucleosome 97.5 0.00026 8.7E-09 56.0 7.2 64 37-100 36-100 (123)
38 4g92_C HAPE; transcription fac 97.4 0.00032 1.1E-08 54.4 7.0 71 32-104 41-112 (119)
39 1tzy_B Histone H2B; histone-fo 97.4 0.00038 1.3E-08 55.2 7.2 64 37-100 39-103 (126)
40 1h3o_B Transcription initiatio 97.3 0.00091 3.1E-08 48.7 7.8 61 40-100 11-72 (76)
41 2jss_A Chimera of histone H2B. 97.1 0.0017 5.8E-08 54.0 8.0 64 37-100 6-70 (192)
42 2l5a_A Histone H3-like centrom 96.8 0.0018 6.2E-08 56.0 6.3 65 37-101 18-86 (235)
43 2byk_A Chrac-16; nucleosome sl 96.2 0.0064 2.2E-07 48.6 5.3 69 37-105 22-92 (140)
44 3uk6_A RUVB-like 2; hexameric 94.6 0.16 5.6E-06 42.8 9.0 61 38-99 266-330 (368)
45 3bos_A Putative DNA replicatio 93.2 0.32 1.1E-05 37.6 7.6 59 37-97 180-241 (242)
46 1g8p_A Magnesium-chelatase 38 92.2 0.77 2.6E-05 38.2 9.1 55 51-105 267-328 (350)
47 4dra_E Centromere protein X; D 91.5 1.2 4E-05 32.8 8.3 60 32-94 12-75 (84)
48 2c9o_A RUVB-like 1; hexameric 91.4 0.58 2E-05 41.9 7.9 67 34-101 365-439 (456)
49 2r44_A Uncharacterized protein 90.8 1.9 6.4E-05 36.1 10.1 69 51-119 226-325 (331)
50 2ly8_A Budding yeast chaperone 89.3 0.98 3.3E-05 35.3 6.5 62 37-98 8-79 (121)
51 3k1j_A LON protease, ATP-depen 89.0 1.7 5.7E-05 40.5 9.1 51 48-98 311-374 (604)
52 2v1u_A Cell division control p 88.8 1.8 6.2E-05 35.9 8.3 69 50-118 221-301 (387)
53 1in4_A RUVB, holliday junction 88.5 3.4 0.00012 35.1 10.1 86 33-120 178-272 (334)
54 2keb_A DNA polymerase subunit 88.0 2.6 9E-05 32.1 7.9 61 32-93 23-86 (101)
55 2chg_A Replication factor C sm 87.4 1.3 4.5E-05 33.2 6.1 57 38-97 168-224 (226)
56 2qby_A CDC6 homolog 1, cell di 85.1 5.6 0.00019 32.8 9.3 50 50-99 217-272 (386)
57 1jr3_D DNA polymerase III, del 82.6 1.6 5.5E-05 36.8 5.0 62 37-99 148-209 (343)
58 2qby_B CDC6 homolog 3, cell di 82.4 6.1 0.00021 33.0 8.5 63 36-100 198-271 (384)
59 1fnn_A CDC6P, cell division co 81.9 7.6 0.00026 32.3 8.9 68 51-118 214-299 (389)
60 1njg_A DNA polymerase III subu 81.7 3.1 0.00011 31.3 5.9 54 38-96 192-248 (250)
61 1sxj_D Activator 1 41 kDa subu 79.9 1.5 5.3E-05 36.3 3.9 59 38-97 199-261 (353)
62 1h3o_A Transcription initiatio 79.7 2.5 8.5E-05 30.5 4.4 43 40-82 12-54 (75)
63 3ksy_A SOS-1, SON of sevenless 79.3 7.9 0.00027 38.9 9.4 67 32-98 102-168 (1049)
64 1w5s_A Origin recognition comp 78.9 13 0.00045 31.2 9.5 68 51-118 236-319 (412)
65 3pfi_A Holliday junction ATP-d 78.6 11 0.00037 31.3 8.7 79 39-119 192-275 (338)
66 3b0b_C CENP-X, centromere prot 78.3 7.4 0.00025 28.2 6.7 61 32-94 8-71 (81)
67 3fes_A ATP-dependent CLP endop 77.5 3.9 0.00013 30.9 5.2 58 39-98 47-116 (145)
68 1hqc_A RUVB; extended AAA-ATPa 76.3 6.1 0.00021 32.3 6.5 82 38-121 175-261 (324)
69 3fh2_A Probable ATP-dependent 74.0 6.5 0.00022 29.6 5.7 58 39-98 46-116 (146)
70 1k6k_A ATP-dependent CLP prote 73.1 15 0.00051 27.0 7.4 57 40-98 40-114 (143)
71 2qz4_A Paraplegin; AAA+, SPG7, 72.5 2.7 9.4E-05 33.3 3.3 62 38-99 184-249 (262)
72 1bh9_B TAFII28; histone fold, 71.9 21 0.00072 26.1 7.8 59 40-98 22-81 (89)
73 2zc2_A DNAD-like replication p 69.6 11 0.00038 25.8 5.6 54 18-75 5-65 (78)
74 3h4m_A Proteasome-activating n 68.1 9.1 0.00031 30.8 5.6 37 64-100 223-259 (285)
75 3kw6_A 26S protease regulatory 67.7 5.5 0.00019 27.1 3.6 60 38-100 10-74 (78)
76 2y1q_A CLPC N-domain, negative 67.1 22 0.00074 26.3 7.2 58 39-98 45-114 (150)
77 4e2i_2 DNA polymerase alpha su 63.4 13 0.00043 27.0 5.0 54 36-90 4-60 (78)
78 3pvs_A Replication-associated 61.3 9.6 0.00033 34.4 5.0 62 38-99 172-244 (447)
79 1jr3_A DNA polymerase III subu 57.2 13 0.00044 30.8 4.8 54 38-96 185-241 (373)
80 1ixz_A ATP-dependent metallopr 56.7 12 0.00042 29.8 4.4 60 36-96 187-253 (254)
81 3nbx_X ATPase RAVA; AAA+ ATPas 56.2 11 0.00039 34.7 4.6 45 51-95 225-282 (500)
82 1wwi_A Hypothetical protein TT 55.9 9.8 0.00034 30.7 3.6 54 39-92 7-60 (148)
83 2z4s_A Chromosomal replication 54.8 16 0.00053 32.6 5.1 59 40-100 272-333 (440)
84 1r6b_X CLPA protein; AAA+, N-t 54.2 51 0.0017 31.0 8.8 53 47-100 369-434 (758)
85 3f9v_A Minichromosome maintena 54.1 12 0.00041 35.1 4.4 34 66-99 554-587 (595)
86 2chq_A Replication factor C sm 52.4 19 0.00066 28.9 4.9 56 38-96 168-223 (319)
87 2i5u_A DNAD domain protein; st 52.1 56 0.0019 22.7 6.8 44 42-85 6-58 (83)
88 1iy2_A ATP-dependent metallopr 52.0 20 0.00068 29.1 5.0 31 66-96 247-277 (278)
89 1lv7_A FTSH; alpha/beta domain 51.6 19 0.00064 28.7 4.7 36 64-99 217-252 (257)
90 3zri_A CLPB protein, CLPV; cha 50.7 69 0.0024 25.2 7.9 56 39-97 64-133 (171)
91 3vlf_B 26S protease regulatory 50.4 15 0.00052 25.7 3.5 59 38-99 8-71 (88)
92 1ofh_A ATP-dependent HSL prote 44.8 38 0.0013 27.1 5.5 52 47-98 229-298 (310)
93 1sxj_B Activator 1 37 kDa subu 44.5 49 0.0017 26.5 6.2 53 39-97 174-229 (323)
94 3cuq_B Vacuolar protein-sortin 42.3 1.4E+02 0.0049 24.5 9.0 15 36-50 45-59 (218)
95 1iqp_A RFCS; clamp loader, ext 41.7 33 0.0011 27.6 4.7 52 39-93 177-228 (327)
96 1r4v_A Hypothetical protein AQ 41.1 11 0.00039 31.0 1.8 59 34-92 26-84 (171)
97 3f8t_A Predicted ATPase involv 39.9 24 0.00084 33.3 4.1 48 51-98 414-482 (506)
98 3syl_A Protein CBBX; photosynt 39.8 83 0.0028 25.3 6.9 55 38-93 211-280 (309)
99 1l8q_A Chromosomal replication 39.4 19 0.00063 29.9 2.9 94 38-133 173-284 (324)
100 3vfd_A Spastin; ATPase, microt 38.4 55 0.0019 28.0 5.9 59 39-98 290-364 (389)
101 4b4t_H 26S protease regulatory 34.4 53 0.0018 30.5 5.4 61 39-99 388-450 (467)
102 3aji_B S6C, proteasome (prosom 34.1 42 0.0014 22.7 3.6 33 66-98 38-70 (83)
103 1r6b_X CLPA protein; AAA+, N-t 33.8 1.2E+02 0.0041 28.4 7.8 57 40-98 40-114 (758)
104 3g80_A Protein B2; RNA-binding 33.4 87 0.003 23.4 5.4 64 8-83 18-95 (97)
105 3u61_B DNA polymerase accessor 33.0 14 0.00049 30.4 1.2 55 39-97 180-235 (324)
106 2az0_A B2 protein; protein-RNA 32.9 57 0.002 23.3 4.2 61 14-84 2-72 (73)
107 4b4t_I 26S protease regulatory 32.6 61 0.0021 29.9 5.4 58 38-98 360-422 (437)
108 2dzn_B 26S protease regulatory 32.4 46 0.0016 22.6 3.6 34 66-99 35-68 (82)
109 4b4t_J 26S protease regulatory 30.7 69 0.0024 29.0 5.4 58 39-99 327-389 (405)
110 1khy_A CLPB protein; alpha hel 30.6 59 0.002 23.7 4.2 31 67-97 86-116 (148)
111 3l39_A Putative PHOU-like phos 30.4 1.4E+02 0.0047 24.2 6.8 85 30-120 19-103 (227)
112 2i5u_A DNAD domain protein; st 29.2 1.4E+02 0.0048 20.5 5.9 56 19-75 4-70 (83)
113 4h62_V Mediator of RNA polymer 29.2 31 0.0011 20.6 1.9 19 47-65 4-22 (31)
114 4b4t_K 26S protease regulatory 29.1 1.2E+02 0.0039 27.6 6.6 59 39-100 352-415 (428)
115 1sxj_A Activator 1 95 kDa subu 28.6 41 0.0014 30.4 3.6 54 39-98 217-273 (516)
116 3b9p_A CG5977-PA, isoform A; A 27.2 58 0.002 26.2 3.9 59 39-98 197-271 (297)
117 3d8b_A Fidgetin-like protein 1 27.1 1.4E+02 0.0048 25.3 6.5 60 38-98 258-333 (357)
118 1sxj_C Activator 1 40 kDa subu 26.5 63 0.0021 26.9 4.1 58 38-96 176-236 (340)
119 4b4t_L 26S protease subunit RP 25.6 85 0.0029 28.6 5.1 58 39-99 360-422 (437)
120 3cuq_A Vacuolar-sorting protei 25.4 2.3E+02 0.0077 24.0 7.4 66 33-98 34-126 (234)
121 2krk_A 26S protease regulatory 24.7 74 0.0025 22.1 3.6 33 67-99 49-81 (86)
122 4b4t_M 26S protease regulatory 24.2 1.2E+02 0.0041 27.6 5.8 58 38-98 359-421 (434)
123 1u5t_A Appears to BE functiona 22.6 2.1E+02 0.0073 24.1 6.7 70 28-98 49-140 (233)
124 3rq9_A TSI2, type VI secretion 22.3 38 0.0013 24.7 1.6 25 89-114 48-72 (85)
125 2lbf_A 60S acidic ribosomal pr 22.2 1.5E+02 0.0053 20.4 4.8 29 62-98 6-34 (69)
126 2olt_A Hypothetical protein; s 21.9 62 0.0021 25.8 3.1 33 88-120 61-93 (227)
127 1qjt_A EH1, epidermal growth f 21.6 1.4E+02 0.0049 20.6 4.7 51 28-98 23-73 (99)
128 3v9r_B MHF2, uncharacterized p 21.5 2.5E+02 0.0084 20.7 6.2 58 38-95 5-72 (88)
129 3pxi_A Negative regulator of g 21.3 1.5E+02 0.0051 27.9 6.0 32 67-98 83-114 (758)
130 3stq_A TSI2, putative uncharac 21.2 47 0.0016 24.9 2.0 26 89-115 73-98 (102)
131 2r62_A Cell division protease 20.8 35 0.0012 27.1 1.3 34 65-98 219-252 (268)
132 1qvr_A CLPB protein; coiled co 20.7 2.8E+02 0.0097 26.6 7.9 71 39-115 45-130 (854)
133 3a1y_A 50S ribosomal protein P 20.1 1.1E+02 0.0037 20.4 3.5 30 34-64 16-45 (58)
No 1
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.96 E-value=2.2e-29 Score=181.47 Aligned_cols=68 Identities=50% Similarity=0.919 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 34 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 34 PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
|||+++|++||++|||++|||+|++||+||+|||+.+||+||..||+||||+||+++||||||++|++
T Consensus 1 Prda~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~~ 68 (68)
T 1taf_A 1 PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTLD 68 (68)
T ss_dssp CHHHHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC-
T ss_pred CchhHHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999874
No 2
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.64 E-value=3e-16 Score=111.63 Aligned_cols=65 Identities=28% Similarity=0.538 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.+|+. .|.+|+|++|+.+|+++++.+|.|++++|+.+|++||..||+||||+||+.+||++|+++
T Consensus 6 ~lp~a--~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIA--PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHH--HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChH--HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 46764 799999999999999999999999999999999999999999999999999999999863
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.58 E-value=1.7e-15 Score=117.39 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccCCC----
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQP---- 107 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~~p---- 107 (200)
.+|+- .|.+|++..|+.+++++++.+|.+++++|+..|+.||..||+||||+||+++||++|++..-...|..+
T Consensus 7 ~lP~a--~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l 84 (111)
T 3b0c_T 7 EIASS--LIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84 (111)
T ss_dssp ---CH--HHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHH
T ss_pred CCCHH--HHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHH
Confidence 46663 789999999999999999999999999999999999999999999999999999999988666778888
Q ss_pred ----CcHH---HHHHHHHhhcCC
Q 028993 108 ----PARE---VLLELAKNRNKI 123 (200)
Q Consensus 108 ----Ppre---~LlelA~e~N~~ 123 (200)
+|+| .|+..|...|++
T Consensus 85 ~~~~lp~E~~~~l~~~a~~~n~~ 107 (111)
T 3b0c_T 85 VERHLPLEYRKLLIPIAVSGNKV 107 (111)
T ss_dssp HHHHSCHHHHHHHCCC-------
T ss_pred HHHhCcHHHHHHhccccccCCcc
Confidence 8888 455666666654
No 4
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.53 E-value=4.9e-15 Score=114.80 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=54.3
Q ss_pred HHHHHHhCCC---cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 40 VKSLLKSMGV---EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 40 I~~ILks~Gv---~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
|.+|+++.|. .+|+++|+.+|+||+|+|+.+|+.||..||+||||+||+.+||+||++.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 6667777766 6899999999999999999999999999999999999999999999865
No 5
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.9e-14 Score=108.44 Aligned_cols=61 Identities=28% Similarity=0.527 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.+++...++++|+. |+|+++.+|.|++|+|+.+|++|+..||+||||+||+.+||+||++.
T Consensus 19 ~ki~~e~~~~~g~~-vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 19 EERLQQVLSSEDIK-YTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHSCSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhcCce-eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 35667777788875 99999999999999999999999999999999999999999999854
No 6
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.47 E-value=2.1e-14 Score=112.41 Aligned_cols=60 Identities=25% Similarity=0.460 Sum_probs=56.3
Q ss_pred HHHHHHHhCCCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVED---YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~---yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.|.+|+++.|.++ |+++++.+|.|++|+|+.+|++|+..||+||||+||+.+||+||++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 4788888888877 99999999999999999999999999999999999999999999864
No 7
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.34 E-value=1.5e-12 Score=105.15 Aligned_cols=60 Identities=22% Similarity=0.440 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+++.......|+. |+++++.+|.|++|+|+..|+.|+..||+||||+||+.+||+||++.
T Consensus 27 kIvee~~~~~~~~-vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 27 ALAQDVAEDKGVL-FSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4455555555644 99999999999999999999999999999999999999999999965
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.32 E-value=1.6e-12 Score=95.84 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.+|+.+ |.+|+++.|+.++++++...|.+.++.|..+|++||..|++||||+||+++||.+|++..
T Consensus 10 ~ip~~~--I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 10 GITKPA--IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp SSCHHH--HHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCHHH--HHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 478764 899999999999999999999999999999999999999999999999999999999864
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.31 E-value=3.7e-12 Score=97.38 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=62.8
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.+|.+ .|.+|+++.|+.++++++...|.+.++.|+.+|++||..|++||+|+||+++||.+|++..
T Consensus 28 ~ip~~--~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKP--AIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCHH--HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 57876 4999999999999999999999999999999999999999999999999999999999875
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.29 E-value=6.7e-12 Score=95.60 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.+|.. .|++|+++.|+.+++.++...|.+.++.|+.+|++||..||+||+|+||+.+||.+|++..
T Consensus 29 gip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 29 GITKP--AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GSCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cCCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 37765 5999999999999999999999999999999999999999999999999999999999874
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.29 E-value=5.6e-12 Score=96.13 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.+|.. .|++|+++.|+.+++.++...|.++++.|+.+|++||..||+||+|+||+.+||.+|++..
T Consensus 29 gip~~--~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 29 GITKP--AIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp -CCHH--HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCHH--HHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 47876 5999999999999999999999999999999999999999999999999999999999864
No 12
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.23 E-value=3.3e-11 Score=87.02 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=60.4
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 97 (200)
.+|. ..|.+|.++.|++++++++...|.+-++.++.+|+++|..|++|+||++++.+||.+|++
T Consensus 6 ~lp~--~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISA--ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCH--HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCH--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4665 569999999999999999999999999999999999999999999999999999999974
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.02 E-value=6.1e-10 Score=90.95 Aligned_cols=67 Identities=22% Similarity=0.380 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
.+|. -.|.+|+|..|+.+++.++...|.+++..|+..|+.+|..||+|+||+||+.+||.+|++..+
T Consensus 82 ~lP~--a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 82 LFGR--ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp CCCH--HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred cCCc--cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 4564 569999999999999999999999999999999999999999999999999999999998754
No 14
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.4e-09 Score=85.84 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=53.6
Q ss_pred HhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 45 KSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 45 ks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
...||.++|.++...+.+.+..|..+|+.||+.|++|||||||+++||.+|++.+-.
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 667999999999999999999999999999999999999999999999999987443
No 15
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.94 E-value=1.9e-09 Score=75.62 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=58.8
Q ss_pred CChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 33 LPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 33 ~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+|+ --|.+|+|+.|..+++.+++..|.+.++.|...|..||..+|.|+||+||+.+||.+|++.
T Consensus 3 lP~--a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPI--APIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCH--HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCc--cHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 454 3578899999999999999999999999999999999999999999999999999999853
No 16
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.2e-09 Score=94.51 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=56.8
Q ss_pred HHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 41 KSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 41 ~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.+|++..||.++|..+...|.+.+..|..+|+.||+.|++||||+||+++||.+|++..
T Consensus 168 ~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 168 EEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 38999999999999999999999999999999999999999999999999999999864
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.82 E-value=8.5e-09 Score=84.17 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 32 DLPRDAKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.+|. -.|.+|+|.. |+.+++.++...|.+.+..|+..|..+|..||+|+||+||+++||..|....
T Consensus 4 ~LP~--a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 4 ELPK--AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp CCCH--HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred cCCc--cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 3564 5699999999 9999999999999999999999999999999999999999999999999763
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.77 E-value=2.8e-08 Score=72.88 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=58.7
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
.|+|..|..+. |..+|+..++..|-|.++.|..++.+||...|.||||.||...||+||...|..
T Consensus 10 ~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 10 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 46777776655 778999999999999999999999999999999999999999999999988754
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.65 E-value=7.8e-08 Score=71.31 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCC---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 37 AKIVKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 37 a~~I~~ILks~G---v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
.|+|..|-.+.. ..+|+..++..|-|.++.|..++.+||...|.||||.||...||+||...|..
T Consensus 10 ~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 10 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp HHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence 467777775543 57999999999999999999999999999999999999999999999988754
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.63 E-value=1.1e-07 Score=70.67 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCChhHHHHHHHHHhCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccCCCCc
Q 028993 32 DLPRDAKIVKSLLKSMGV--EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPA 109 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv--~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~~pPp 109 (200)
.+|+ .-|.+|+|+.|. .+++.+++..|.+.++.|+..|..+|..+|.|+||+||..+||..|++ ++++...-+|-
T Consensus 8 ~LP~--a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~-~l~F~~~i~~~ 84 (93)
T 1n1j_A 8 YLPI--ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS-TLGFDSYVEPL 84 (93)
T ss_dssp CCCH--HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HTTCGGGHHHH
T ss_pred cCCh--hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH-HcCcHhhHHHH
Confidence 4665 457899999965 799999999999999999999999999999999999999999999997 57765444444
Q ss_pred HHHHH
Q 028993 110 REVLL 114 (200)
Q Consensus 110 re~Ll 114 (200)
+.+|-
T Consensus 85 ~~~l~ 89 (93)
T 1n1j_A 85 KLYLQ 89 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.52 E-value=5.3e-07 Score=64.86 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=60.9
Q ss_pred CCCChhHHHHHHHHH-hCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 31 EDLPRDAKIVKSLLK-SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 31 ~~~PrDa~~I~~ILk-s~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
..+|+ -.|.+|+| .++-..++.++...|.+++..|+..|..+|...|.|+||+||+.+||..|++..+.
T Consensus 3 ~~LP~--A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 3 RTVPR--GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp -CCCH--HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred Ccccc--cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 35676 45789999 54777899999999999999999999999999999999999999999999987553
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.49 E-value=3.6e-07 Score=74.94 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCC---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 37 AKIVKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 37 a~~I~~ILks~G---v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
.++|..|..+.. ..+|+..++..|-|.++.|..++++||..+|.||+|.||...||+||...|..
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 577777776654 57999999999999999999999999999999999999999999999988753
No 23
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.48 E-value=3.6e-07 Score=69.87 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCC----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSMG----VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~G----v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.++|..|..+.. ..+|+..++..|-|.++.|..++.+||...|-||||.||...||+||...
T Consensus 34 ~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 34 ARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 577778877653 57999999999999999999999999999999999999999999999864
No 24
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.46 E-value=4.8e-07 Score=72.62 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=58.0
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
.++|..|..+. |..+|+..++..|-|.++.|..++.+||..+|.||||.||...||+||...|..
T Consensus 69 ~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 46666665544 778999999999999999999999999999999999999999999999988754
No 25
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.44 E-value=4e-07 Score=73.50 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCC---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 37 AKIVKSLLKSMG---VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 37 a~~I~~ILks~G---v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
.++|..|-.+.. ..+|+..++..|-|.++.|..++++||..+|.||+|.||...||+||...|..
T Consensus 68 ~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 68 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 567777765542 57999999999999999999999999999999999999999999999988653
No 26
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.35 E-value=1e-06 Score=69.28 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=59.6
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+--|+++|++. ++++++..+...|...++-++.+||+.|..+|.|+++++|+.+||++||..
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 67799999997 999999999999999999999999999999999999999999999999986
No 27
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.31 E-value=1.1e-06 Score=68.91 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSMG-VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~G-v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+--|+++|++.+ +.+++..+...|...++-++.+||+.|..+|.|+|+++|+.+||++||..
T Consensus 25 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 25 VGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred hHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 567999999998 89999999999999999999999999999999999999999999999985
No 28
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.30 E-value=1.5e-06 Score=68.91 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+--|+++|++. ++.+++..+...|...++-++.+||+.|..+|.|+++++|+.+||++||..
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 28 VGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 66799999996 999999999999999999999999999999999999999999999999986
No 29
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.25 E-value=2.1e-06 Score=69.79 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+--|+++|++. ++++++..+...|...++.++.+||+.|..+|.|+++++|+.+||++||..
T Consensus 47 VgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 47 VGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 56799999997 999999999999999999999999999999999999999999999999986
No 30
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.24 E-value=1.9e-06 Score=68.51 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+--|+++|++. ++.+++..+...|...++-++.+||+.|..+|.|+++++|+.+||++||..
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 67899999996 999999999999999999999999999999999999999999999999986
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.18 E-value=3.7e-06 Score=66.59 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCC-C-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 37 AKIVKSLLKSMG-V-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~G-v-~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+--|+++|++.+ + .+++..+...|...++-++.+||+-|-.+|.|+++++|+.+||++||..
T Consensus 30 V~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 30 VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 677999999998 4 4999999999999999999999999999999999999999999999976
No 32
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.11 E-value=7e-06 Score=68.47 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred CCChhHHHHHHHHHhCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccCCCCcH
Q 028993 32 DLPRDAKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAR 110 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv-~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~~pPpr 110 (200)
.+|+ -.|.+|+|+.+- .+++.++...|.+.+..|+.-|...|...|.|+||+||+.+||..|+. ++++...-+|=+
T Consensus 15 ~LP~--A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv~~lk 91 (179)
T 1jfi_B 15 TIPR--AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYISEVK 91 (179)
T ss_dssp CCCH--HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGHHHHH
T ss_pred hcCH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHHHHHH
Confidence 6887 568999999974 789999999999999999999999999999999999999999999997 477654444444
Q ss_pred HHHH
Q 028993 111 EVLL 114 (200)
Q Consensus 111 e~Ll 114 (200)
.+|-
T Consensus 92 ~~L~ 95 (179)
T 1jfi_B 92 EVLQ 95 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 33
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.09 E-value=6.5e-06 Score=64.93 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCChhHHHHHHHHHhCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhcc-ccCCCC
Q 028993 32 DLPRDAKIVKSLLKSMG--VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNS-SFSQPP 108 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~G--v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~-~F~~pP 108 (200)
.+|. ..|.+|+|+.+ +..++.+++..|.+.+..|+..|...|..+|.|.+|+||+.+||..|+.. +++ .|.. |
T Consensus 9 ~LP~--A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~-l~f~~fl~-~ 84 (128)
T 2byk_B 9 NLPN--AVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE-LDFESFVP-S 84 (128)
T ss_dssp --CC--SHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-TTCTTTHH-H
T ss_pred cCCH--HHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH-cCcHHHHH-H
Confidence 4565 45789999754 78999999999999999999999999999999999999999999999976 554 4443 4
Q ss_pred cHHHHHH
Q 028993 109 AREVLLE 115 (200)
Q Consensus 109 pre~Lle 115 (200)
=+.+|-+
T Consensus 85 lk~~l~~ 91 (128)
T 2byk_B 85 LTQDLEV 91 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 34
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.09 E-value=7.9e-06 Score=61.24 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHhCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhcccc
Q 028993 32 DLPRDAKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF 104 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv-~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F 104 (200)
.+| +--|++|+|+.+- .+++.+++..|...++.++.++++.|...|.+.+|+||+.+||.+||+.--.+.|
T Consensus 19 ~lP--~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~F 90 (97)
T 1n1j_B 19 ELP--LARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDF 90 (97)
T ss_dssp -CC--HHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred cCC--HHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHH
Confidence 456 4568999999955 6899999999999999999999999999999999999999999999987544555
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.03 E-value=1.2e-05 Score=66.89 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhC-CC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 36 DAKIVKSLLKSM-GV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 36 Da~~I~~ILks~-Gv-~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
-+--|+++|++. ++ .+++..+...|...++-++.+||+.|..+|.|+|+++|+.+||++||..
T Consensus 107 Pv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 107 PVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 467899999997 66 6999999999999999999999999999999999999999999999975
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.85 E-value=1.4e-05 Score=60.18 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhcccc
Q 028993 37 AKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF 104 (200)
Q Consensus 37 a~~I~~ILks~Gv-~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F 104 (200)
+--|++|||+.+- .+++.+++..|...++-++.+|++.|...|.+.||++|+.+||.+||+.--.+.|
T Consensus 14 vaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 14 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp HHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred hHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 5668999999854 7999999999999999999999999999999999999999999999987444433
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.51 E-value=0.00026 Score=56.05 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 37 AKIVKSLLKSMGVE-DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 37 a~~I~~ILks~Gv~-~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
...|.++|+..+-+ ..+.++...|-.|++.....|+.+|..+|.|++|+||+..||+.|+..-+
T Consensus 36 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 36 AIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 56899999998765 79999999999999999999999999999999999999999999997744
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.45 E-value=0.00032 Score=54.41 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhcccc
Q 028993 32 DLPRDAKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF 104 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F 104 (200)
.+|- --|++|+|.. .+..++.+++..+...++.++..|+..|...|...+|++|+.+||..||+.--.+.|
T Consensus 41 ~lPv--aRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 41 QLPL--ARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp SSCH--HHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred CCCH--HHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 3564 5689999965 778999999999999999999999999999999999999999999999976443444
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.41 E-value=0.00038 Score=55.23 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 37 AKIVKSLLKSMGVE-DYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 37 a~~I~~ILks~Gv~-~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
...|.++|+..+-. ..+.++...|-.|++.....|+.+|..+|.|++|+||+..||+.|+..-+
T Consensus 39 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 39 SIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 45799999998866 79999999999999999999999999999999999999999999997744
No 40
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.33 E-value=0.00091 Score=48.74 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=52.9
Q ss_pred HHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 40 VKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 40 I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
+..+++.. |-...+|+|-..|+++|..|+.+|+..|..+|+|-|-.+|+.-||++.++..-
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~w 72 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQW 72 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhc
Confidence 34455544 55789999999999999999999999999999999999999999999987643
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.08 E-value=0.0017 Score=53.95 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 37 AKIVKSLLKSMGV-EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 37 a~~I~~ILks~Gv-~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
...|.++||..+- ...+.++...|-.|+.+....|..+|..++.|++|+||+..||+.|++.-+
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~l 70 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 70 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 4568899998865 579999999999999999999999999999999999999999999997643
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0018 Score=56.05 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCC----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 37 AKIVKSLLKSMG----VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 37 a~~I~~ILks~G----v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
.|+|..|..+.. --+|+..++..|-|-++.|...+.+|+...|-||+|-||-..||+||...|..
T Consensus 18 qRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 18 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 688999998874 35899999999999999999999999999999999999999999999876654
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.19 E-value=0.0064 Score=48.57 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=54.9
Q ss_pred HHHHHHHHHhC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHhhccccC
Q 028993 37 AKIVKSLLKSM-GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYS-EHAGKNTIDCDDVKLAVQSKVNSSFS 105 (200)
Q Consensus 37 a~~I~~ILks~-Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA-~HAgR~tI~~eDVrLAI~~r~~~~F~ 105 (200)
+--|++|+|.- .+..++..++..+-..++-++..|+..|...| ...+|+||+.+||..||...-.+.|-
T Consensus 22 laRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL 92 (140)
T 2byk_A 22 LSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFL 92 (140)
T ss_dssp -------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGG
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhH
Confidence 45578899887 55689999999999999999999999999999 88899999999999999874445553
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.64 E-value=0.16 Score=42.85 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHH----HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWY----RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.++...++..|+. ++++++..|.+++. |++..++..|..+|...|+..|+.+||+-|+...
T Consensus 266 ~il~~~~~~~~~~-~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 266 QILRIRCEEEDVE-MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHTTCC-BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 3445555566754 99999999999984 8999999999999999999999999999999763
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.20 E-value=0.32 Score=37.63 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 028993 37 AKIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 37 a~~I~~ILks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 97 (200)
.+++..+++..|+ .++++++..|.+.+. |.+..++..|..+|...|+ .|+.+||+-+++
T Consensus 180 ~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 180 LAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 4566677777786 589999999998876 6777888888888866664 699999998874
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.21 E-value=0.77 Score=38.17 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=48.4
Q ss_pred ccchHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccC
Q 028993 51 DYEPRVIHQFLELWY-------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFS 105 (200)
Q Consensus 51 ~yep~Vv~qLLEfay-------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~ 105 (200)
.++++++..|.+++. |....++.-|..+|...|+..|+.+||+.|+..-+.+.+.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 699999999999976 6788899999999999999999999999999887766554
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.49 E-value=1.2 Score=32.82 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHhCCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHH
Q 028993 32 DLPRDAKIVKSLLKSMGV----EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKL 94 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv----~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrL 94 (200)
.+| -.+|.+||+ +.. ++.+.+++..+.+++.-++.+....|...|+--|...|+.+|+.-
T Consensus 12 ~i~--~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 12 GFR--KELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp CCC--HHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCC--HHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 455 467999999 443 589999999999999999999999999988877888999999864
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.36 E-value=0.58 Score=41.89 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHH----hCCCcccchHHHHHHHHHH-H---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhc
Q 028993 34 PRDAKIVKSLLK----SMGVEDYEPRVIHQFLELW-Y---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVN 101 (200)
Q Consensus 34 PrDa~~I~~ILk----s~Gv~~yep~Vv~qLLEfa-y---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~ 101 (200)
|-+..-+..||+ ..|+. ++++++..+..++ . |++..++..|..+|...|+..|+.+||+.|+..-++
T Consensus 365 ~~~~~e~~~iL~~~~~~~~~~-~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 365 LYTPQEMKQIIKIRAQTEGIN-ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 335555555554 34654 8999999999998 4 899999999999999999999999999999877443
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.81 E-value=1.9 Score=36.07 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=51.5
Q ss_pred ccchHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccC--
Q 028993 51 DYEPRVIHQFLELW-----------------------YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFS-- 105 (200)
Q Consensus 51 ~yep~Vv~qLLEfa-----------------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~-- 105 (200)
.++++++..+.+++ -|-+..++.-|..+|...|+..|+.+||+.|+..-+.|...
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~~~~ 305 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRIILN 305 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTSEEC
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhccCC
Confidence 37888888888876 46667788999999999999999999999999876655443
Q ss_pred ------CCCcHHHHHHHHHh
Q 028993 106 ------QPPAREVLLELAKN 119 (200)
Q Consensus 106 ------~pPpre~LlelA~e 119 (200)
+-.+.+.+-++...
T Consensus 306 ~~~~~~~~~~~~i~~~i~~~ 325 (331)
T 2r44_A 306 YEAEAEGISTRQIIETILRK 325 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhc
Confidence 22345555555443
No 50
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.98 Score=35.30 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCC----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC---CCCH---HHHHHHHHH
Q 028993 37 AKIVKSLLKSMG----VEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKN---TIDC---DDVKLAVQS 98 (200)
Q Consensus 37 a~~I~~ILks~G----v~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~---tI~~---eDVrLAI~~ 98 (200)
.|+|..|..+.. --+|+..++..|-|-++.|...+++|+...|-||-|. .|+. +.++-+++.
T Consensus 8 ~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~ 79 (121)
T 2ly8_A 8 ARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKS 79 (121)
T ss_dssp HHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHH
Confidence 678888877653 3589999999999999999999999999999999654 4442 445544444
No 51
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.02 E-value=1.7 Score=40.52 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=45.2
Q ss_pred CCcccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 48 GVEDYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 48 Gv~~yep~Vv~qLLEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+...++++++..|++++. |....++..|..+|...|+..|+.+||+-|++.
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 345799999999999885 567789999999999999999999999999965
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.80 E-value=1.8 Score=35.92 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=52.8
Q ss_pred cccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhcc----ccCCCC--cHHHHHHHH
Q 028993 50 EDYEPRVIHQFLELWY------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNS----SFSQPP--AREVLLELA 117 (200)
Q Consensus 50 ~~yep~Vv~qLLEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~----~F~~pP--pre~LlelA 117 (200)
..++++++..+.+++. |++..++..|..+|...|+..|+.+||+-|+...... .+...+ .+.+|+.++
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHH
Confidence 4689999999999998 8888999999999988899999999999998764222 122333 345556666
Q ss_pred H
Q 028993 118 K 118 (200)
Q Consensus 118 ~ 118 (200)
.
T Consensus 301 ~ 301 (387)
T 2v1u_A 301 M 301 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.48 E-value=3.4 Score=35.13 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=59.5
Q ss_pred CChhHHHHHHHH----HhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccC
Q 028993 33 LPRDAKIVKSLL----KSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFS 105 (200)
Q Consensus 33 ~PrDa~~I~~IL----ks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~ 105 (200)
-|.+..-+..|| +..|+. ++++++..|.+.+. |.+..+|..+..||...|+..|+.++|+.|+.. +...-.
T Consensus 178 d~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~-~~~~~~ 255 (334)
T 1in4_A 178 DFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV-LNIDDE 255 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH-HTCCTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH-hCCCcC
Confidence 344554444444 455765 89999888887654 677888999999999889999999999999976 443323
Q ss_pred CCCc--HHHHHHHHHhh
Q 028993 106 QPPA--REVLLELAKNR 120 (200)
Q Consensus 106 ~pPp--re~LlelA~e~ 120 (200)
+-+. +..|..++...
T Consensus 256 ~l~~~~~~~l~~~~~~~ 272 (334)
T 1in4_A 256 GLDEFDRKILKTIIEIY 272 (334)
T ss_dssp CCCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 3333 34565566643
No 54
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=87.99 E-value=2.6 Score=32.12 Aligned_cols=61 Identities=15% Similarity=0.306 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHH---HHHHHHHHHHHHhhhCCCCCCHHHHH
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRY---VVDVLTDAQVYSEHAGKNTIDCDDVK 93 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrY---t~~VL~DA~~yA~HAgR~tI~~eDVr 93 (200)
.+.=.+.-|..-|..+||+ +++.|+..++|++.+| +.++..+=..|+-+.+...++.+-+.
T Consensus 23 ~~~Vsae~L~eEfdefGi~-~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~ 86 (101)
T 2keb_A 23 SMSASAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILN 86 (101)
T ss_dssp -CCCCHHHHHHHHHHHTCB-CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHH
T ss_pred hhhccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 4667799999999999987 8889999999999999 66777888889888887777776543
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.42 E-value=1.3 Score=33.21 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 97 (200)
.++..+++..|+. ++++++..|.+.+......++.-....+..+ +.|+.+||+.|+.
T Consensus 168 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 3445555566765 8999999888877644433333333333333 6899999999885
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.10 E-value=5.6 Score=32.82 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=42.7
Q ss_pred cccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 50 EDYEPRVIHQFLELWY------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 50 ~~yep~Vv~qLLEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
..++++++..+.+++. |++..++..|..+|...|+..|+.+||+.|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999999887 5677888888888888889999999999988753
No 57
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=82.56 E-value=1.6 Score=36.85 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 37 AKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 37 a~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.++|..+++..|+. ++++++..|++.+.-=...++.+...++-+++.+.|+.+||+-.+...
T Consensus 148 ~~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 148 PRWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 46888999999986 999999999998774444444444444444456689999998776543
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.37 E-value=6.1 Score=33.03 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhC---CC--cccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 36 DAKIVKSLLKSM---GV--EDYEPRVIHQFLELWY------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 36 Da~~I~~ILks~---Gv--~~yep~Vv~qLLEfay------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
+..-+..||+.. |. ..++++++..+.+++. |++.+++..|..+|. |...|+.+||+.|+....
T Consensus 198 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 198 DAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 444444555442 22 4688999999998887 567788889888887 778999999999987643
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.85 E-value=7.6 Score=32.29 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=53.1
Q ss_pred ccchHHHHHHHHHH------------HHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhcccc----C--CCCcHHH
Q 028993 51 DYEPRVIHQFLELW------------YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSF----S--QPPAREV 112 (200)
Q Consensus 51 ~yep~Vv~qLLEfa------------yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F----~--~pPpre~ 112 (200)
.++++++..+.+.+ -|++..++..|..+|...|+..|+.+||..|+..-....+ . ++..+.+
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~ 293 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLF 293 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHH
Confidence 68999999999999 4788999999999998889999999999999876433221 1 2245667
Q ss_pred HHHHHH
Q 028993 113 LLELAK 118 (200)
Q Consensus 113 LlelA~ 118 (200)
|..++.
T Consensus 294 L~~l~~ 299 (389)
T 1fnn_A 294 LLAIVR 299 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.66 E-value=3.1 Score=31.30 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 96 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 96 (200)
.++..+++..|+ .++++++..|.+.+. |++..++..|..+ +++.|+.+||+-|+
T Consensus 192 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 192 HQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 455666667775 488998888888875 4455555555433 33589999999875
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.94 E-value=1.5 Score=36.28 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHH---HHHHHHHHHHHHHhhhCCC-CCCHHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYR---YVVDVLTDAQVYSEHAGKN-TIDCDDVKLAVQ 97 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayr---Yt~~VL~DA~~yA~HAgR~-tI~~eDVrLAI~ 97 (200)
.++..+++..|+. ++++++..|.+++.. .+..+++.+..++...|+. .|+.+||+-++.
T Consensus 199 ~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 199 DRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 3444555556764 899999999998764 4444555555554433333 899999998764
No 62
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=79.69 E-value=2.5 Score=30.54 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028993 40 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 82 (200)
Q Consensus 40 I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HA 82 (200)
|..|.+..|+++.+++|+..+-=-++.....+++.-...|.|-
T Consensus 12 i~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 12 ILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578899999999999999999999999999999999999885
No 63
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=79.34 E-value=7.9 Score=38.90 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 32 DLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.+--=+--|+++|+..-+.+++..+...|.-.++-.+.+||+=|-.+|+..++..|+..+|.+|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 4445577799999655567999999999999999999999999999999999999999999999966
No 64
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.93 E-value=13 Score=31.20 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=50.3
Q ss_pred ccchHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh-----ccccCCCCc--HHHHH
Q 028993 51 DYEPRVIHQFLELWY---------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV-----NSSFSQPPA--REVLL 114 (200)
Q Consensus 51 ~yep~Vv~qLLEfay---------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~-----~~~F~~pPp--re~Ll 114 (200)
.++++++..+.+.+. +|+..++..|...|...++..|+.++|+.|+.... ...+..-|+ +.+|.
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 315 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILR 315 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHH
Confidence 588899999998888 68888998888888888889999999998885532 223333343 45566
Q ss_pred HHHH
Q 028993 115 ELAK 118 (200)
Q Consensus 115 elA~ 118 (200)
.+|.
T Consensus 316 aia~ 319 (412)
T 1w5s_A 316 LIAE 319 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 65
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.57 E-value=11 Score=31.31 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccCCCCc--HHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPA--REVL 113 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~~pPp--re~L 113 (200)
++...++..|+ .++++++..|...+. |.+..++..|..+|...+...|+.++++-++.. .......-.. +.++
T Consensus 192 il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~e~~~l 269 (338)
T 3pfi_A 192 ILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS-LGVNELGFDAMDLRYL 269 (338)
T ss_dssp HHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH-HTCCTTCCCHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH-hCCcccCCCHHHHHHH
Confidence 45556666675 489999999988653 677888888888999888999999999999876 3322222222 4577
Q ss_pred HHHHHh
Q 028993 114 LELAKN 119 (200)
Q Consensus 114 lelA~e 119 (200)
..++..
T Consensus 270 ~~l~~~ 275 (338)
T 3pfi_A 270 ELLTAA 275 (338)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 777764
No 66
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=78.30 E-value=7.4 Score=28.18 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHHHhC---CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHH
Q 028993 32 DLPRDAKIVKSLLKSM---GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKL 94 (200)
Q Consensus 32 ~~PrDa~~I~~ILks~---Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrL 94 (200)
.+|. .+|++||+.. --++.+.+++..+.+++.-++.+.+..|..-|+--|...|+.+|+.-
T Consensus 8 ~~~~--~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 8 GFRK--ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp CCCH--HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCH--HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 4555 4577777764 23689999999999999999999999998888777888999999964
No 67
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.47 E-value=3.9 Score=30.90 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
++.+||+++|+.. +.+...+.++.. .-+..||..|..+|...|...|+.+.|=+|+-.
T Consensus 47 ~~~~iL~~~gvd~--~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~ 116 (145)
T 3fes_A 47 IAAKVLSKVGFTE--AYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQ 116 (145)
T ss_dssp HHHHHHHHHTCCH--HHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCCH--HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHh
Confidence 5677889999752 333333443332 346789999999999999999999999999954
No 68
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.29 E-value=6.1 Score=32.34 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHH---HHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccCCCC--cHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELW---YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPP--AREV 112 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfa---yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~~pP--pre~ 112 (200)
.++..+++..|+ .++++++..|++++ -|.+..++..+..+|...+...|+.+|++.++.. .......-. .++.
T Consensus 175 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~e~~~ 252 (324)
T 1hqc_A 175 QGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA-LGLDELGLEKRDREI 252 (324)
T ss_dssp HHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH-HTCCTTCCCHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-hcccccCCCHHHHHH
Confidence 455556666675 48999999999885 4667777888877787778889999999988865 222222222 2456
Q ss_pred HHHHHHhhc
Q 028993 113 LLELAKNRN 121 (200)
Q Consensus 113 LlelA~e~N 121 (200)
+..++...+
T Consensus 253 i~~~~~~~~ 261 (324)
T 1hqc_A 253 LEVLILRFG 261 (324)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhc
Confidence 666666544
No 69
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=73.98 E-value=6.5 Score=29.59 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
++.+||+++|+.. +.+...+.++.. ..+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 46 ~~~~iL~~~gv~~--~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~ 116 (146)
T 3fh2_A 46 VAAKALESMGISL--DAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIR 116 (146)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCCH--HHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHh
Confidence 5677899999751 233333433332 356789999999999999999999999999954
No 70
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=73.05 E-value=15 Score=26.99 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHHhCCCcccchHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 40 VKSLLKSMGVEDYEPRVIHQFLELWYRY------------------VVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 40 I~~ILks~Gv~~yep~Vv~qLLEfayrY------------------t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+..||+++|+. -+.+...+-++..++ +..+|+.|..+|...|...|+.+.+-+|+-.
T Consensus 40 ~~~iL~~~g~~--~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 40 AREALEACSVD--LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHSCBCCSSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 77899999985 123333333333332 4568999999999999999999999999943
No 71
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.46 E-value=2.7 Score=33.27 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHH----HHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELW----YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfa----yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.++...++..|...-.......|.... -+....++..|..+|...|+..|+.+|++.|++..
T Consensus 184 ~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 184 EIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 356666777886543332344555433 35666788888888888888999999999999763
No 72
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=71.89 E-value=21 Score=26.08 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCHHHHHHHHHH
Q 028993 40 VKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG-KNTIDCDDVKLAVQS 98 (200)
Q Consensus 40 I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAg-R~tI~~eDVrLAI~~ 98 (200)
|.+|+...--+.+++.|+..|--++.-|+.+|.+.|+...+.-| ..-|...-|+.|...
T Consensus 22 vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 22 IKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 33333333235789999999999999999999999999998765 457899999999864
No 73
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=69.63 E-value=11 Score=25.80 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHHHhhhhcCCCCCCChhHHHHHHHHHhCCCcccchHHHHHHHHHH-------HHHHHHHHHHH
Q 028993 18 NLLQKAEEMAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELW-------YRYVVDVLTDA 75 (200)
Q Consensus 18 ~~~~~~~~m~~~~~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfa-------yrYt~~VL~DA 75 (200)
+++..+++.- |...-|.+.+.|...+...| |++++|..+++.| .+|+..||.+=
T Consensus 5 ~l~~~~e~~~-gr~ls~~e~~~i~~w~~~~~---~~~elI~~A~~~a~~~~~~s~~Yi~~Il~~W 65 (78)
T 2zc2_A 5 ALVEDFEREL-GRMLSPFELEDLQKTVSDDK---TDPDLVRSALREAVFNGKTNWNYIQAILRNW 65 (78)
T ss_dssp HHHHHHHHHH-TSCCCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444454432 32356889999999999877 8899999999998 47888887654
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=68.06 E-value=9.1 Score=30.84 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 64 WYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 64 ayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
.-+-...++..|..+|-..++..|+.+|++-|++.-.
T Consensus 223 ~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 223 VGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 3456778889999999888999999999999997643
No 75
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=67.69 E-value=5.5 Score=27.06 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCc-ccchHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 38 KIVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 38 ~~I~~ILks~Gv~-~yep~Vv~qLLE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
.++...|+.+.+. +++ ...|.+ |.-.=...+..+|..+|-..++..|+.+|+.-|++.-.
T Consensus 10 ~Il~~~l~~~~~~~~~d---l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHTTSEECTTCC---HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3455555555432 232 333333 33344677888999999888999999999999997643
No 76
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=67.11 E-value=22 Score=26.33 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
++..||+.+|+.. +.+...+-++.. .-+..+|..|..+|...|...|+.+.+-+|+-.
T Consensus 45 ~~~~iL~~~g~~~--~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 45 IAAKALQALGLGS--EKIQKEVESLIGRAQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHHHHHCCC-----CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHHhccCCcccccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHh
Confidence 5677899999751 223333322221 346678999999999999999999999999954
No 77
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=63.36 E-value=13 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhCCCcccchHHHHHHHHHHHHH---HHHHHHHHHHHHhhhCCCCCCHH
Q 028993 36 DAKIVKSLLKSMGVEDYEPRVIHQFLELWYRY---VVDVLTDAQVYSEHAGKNTIDCD 90 (200)
Q Consensus 36 Da~~I~~ILks~Gv~~yep~Vv~qLLEfayrY---t~~VL~DA~~yA~HAgR~tI~~e 90 (200)
.++-+..=|..+||+ +++.|+..|+|++-.| +.++..+-..|+.-.|+..++.+
T Consensus 4 s~e~l~~el~~Fgi~-c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~ 60 (78)
T 4e2i_2 4 SAQQLAEELQIFGLD-CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE 60 (78)
T ss_dssp CHHHHHHHHHHTTCC-CCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTT
T ss_pred CHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHH
Confidence 366777889999987 8889999999999988 57788888888755577777654
No 78
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=61.32 E-value=9.6 Score=34.40 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHhC--C----CcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHh
Q 028993 38 KIVKSLLKSM--G----VEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHA--GKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 38 ~~I~~ILks~--G----v~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HA--gR~tI~~eDVrLAI~~r 99 (200)
.++..+++.. | --.++++++..|++++. |.+..+|+.|..++... |+..|+.+||+-+++.+
T Consensus 172 ~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 4555566551 1 13589999999999976 66777777777777544 66789999999998754
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=57.24 E-value=13 Score=30.84 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 96 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 96 (200)
.++..+++..|+. ++++++..|.+.+. |.+..+++.+..|+ ...|+.+||+-++
T Consensus 185 ~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 185 HQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 4555566777864 88999888888765 44555555554443 3569999887664
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.69 E-value=12 Score=29.76 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhC--CCcccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 028993 36 DAKIVKSLLKSM--GVEDYEPRV-IHQFLELWY----RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 96 (200)
Q Consensus 36 Da~~I~~ILks~--Gv~~yep~V-v~qLLEfay----rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 96 (200)
|......||+.+ +. ..++++ ...|.+.+. +-...++.+|..+|...|+..|+.+|++-|+
T Consensus 187 ~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 187 DVKGREQILRIHARGK-PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCC-CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 444444454432 22 233443 444444433 5567889999999988888999999998875
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.21 E-value=11 Score=34.73 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 028993 51 DYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLA 95 (200)
Q Consensus 51 ~yep~Vv~qLLEfay-------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLA 95 (200)
.++++++..+.++.. |....++.-|..+|...||..|+.+||++|
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 477888877777763 456668999999999999999999999944
No 82
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=55.94 E-value=9.8 Score=30.70 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDV 92 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDV 92 (200)
-+.++++..+--++.-.=...++||..+-..++|.-|..-|+..||..|..-|+
T Consensus 7 ~~e~lFR~aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 7 EFERLFRQAAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp HHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 356777777444577777889999999999999999999999999998877664
No 83
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=54.79 E-value=16 Score=32.65 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 40 VKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 40 I~~ILks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
+...++..|+. ++++++..|.+.+. |.+..+|..+..+|...|+ .|+.++++-|++...
T Consensus 272 L~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 272 ARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 33334445764 88899888887754 6677788888888887775 699999999886543
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.20 E-value=51 Score=30.97 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=41.1
Q ss_pred CCCcccchHHHHHHHHHHHHH---------HHHHHHHHHHHHhh----hCCCCCCHHHHHHHHHHhh
Q 028993 47 MGVEDYEPRVIHQFLELWYRY---------VVDVLTDAQVYSEH----AGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 47 ~Gv~~yep~Vv~qLLEfayrY---------t~~VL~DA~~yA~H----AgR~tI~~eDVrLAI~~r~ 100 (200)
.++ .++++++..+.+++++| +.+++.+|...+.. .++..|+.+||.-++....
T Consensus 369 ~~v-~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 369 HDV-RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HTC-CCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred cCC-CCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 344 48999999999999997 45677777766655 3567899999999987643
No 85
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=54.14 E-value=12 Score=35.07 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 66 RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 66 rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
|....++.-|..+|...|+..|+.+||+.|+...
T Consensus 554 R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 554 RQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp TTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 3456788888999999999999999999999763
No 86
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=52.43 E-value=19 Score=28.90 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 96 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 96 (200)
.++..+++..|+. ++++++..|.+.+......++.....++.. ...|+.+||+-++
T Consensus 168 ~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 168 KRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 4556666777875 899999999888765555444444443332 3468888876554
No 87
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=52.15 E-value=56 Score=22.68 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=26.9
Q ss_pred HHHHhCCCcccchHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhCCC
Q 028993 42 SLLKSMGVEDYEPRVIHQFLELWYRY---------VVDVLTDAQVYSEHAGKN 85 (200)
Q Consensus 42 ~ILks~Gv~~yep~Vv~qLLEfayrY---------t~~VL~DA~~yA~HAgR~ 85 (200)
.++...|+--.+|-....|.+++..| ..+++..|..+|-.+|+.
T Consensus 6 ~~~e~~g~g~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~ 58 (83)
T 2i5u_A 6 SIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANAR 58 (83)
T ss_dssp HHHHTTTSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCC
Confidence 34444444456666666666666665 667777777777655543
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.01 E-value=20 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 028993 66 RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAV 96 (200)
Q Consensus 66 rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI 96 (200)
+....++..|..+|...|+..|+.+|++-|+
T Consensus 247 ~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 247 ADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 4566788999999988888999999998875
No 89
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.57 E-value=19 Score=28.71 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 64 WYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 64 ayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.-|-...++..|..+|...|+..|+.+|++.|+...
T Consensus 217 ~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 217 SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 345667788999999999999999999999999763
No 90
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=50.73 E-value=69 Score=25.19 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHh-hhCCCCCCHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY-------------RYVVDVLTDAQVYSE-HAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay-------------rYt~~VL~DA~~yA~-HAgR~tI~~eDVrLAI~ 97 (200)
++..||+++||. .+.+.+-++++. .-+..||+.|..+|. -.|...|+.+.|=||+-
T Consensus 64 ~a~~iL~~~gvd---~~~l~~~l~~l~~~p~~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl 133 (171)
T 3zri_A 64 DVRLVLKQAGLE---VDQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAAL 133 (171)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHSCCCCCCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHH
Confidence 567899999975 222222222332 245789999999999 99999999999999984
No 91
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=50.44 E-value=15 Score=25.72 Aligned_cols=59 Identities=24% Similarity=0.200 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCc-ccchHHHHHHHHHHHHH----HHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 38 KIVKSLLKSMGVE-DYEPRVIHQFLELWYRY----VVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 38 ~~I~~ILks~Gv~-~yep~Vv~qLLEfayrY----t~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.++..+++.+... +++ ...|.+.++-| ...|..+|..+|-..++..|+.+|+.-|++.-
T Consensus 8 ~Il~~~~~~~~~~~dvd---l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 8 NIFRIHSKSMSVERGIR---WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHTTSCBCSCCC---HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCccC---HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 4555556665542 222 33444444434 56778888888888899999999999999763
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=44.81 E-value=38 Score=27.10 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=35.7
Q ss_pred CCCc-ccchHHHHHHHHHHH-----------HHHHHHHHHHHHHHh--hh---CCC-CCCHHHHHHHHHH
Q 028993 47 MGVE-DYEPRVIHQFLELWY-----------RYVVDVLTDAQVYSE--HA---GKN-TIDCDDVKLAVQS 98 (200)
Q Consensus 47 ~Gv~-~yep~Vv~qLLEfay-----------rYt~~VL~DA~~yA~--HA---gR~-tI~~eDVrLAI~~ 98 (200)
.|.. .++++++..|.++++ |.+..++..+...+. .+ |+. .|+.+||+-|++.
T Consensus 229 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 229 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp TTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 5653 699999999999985 445666666653221 22 222 4999999999865
No 93
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.47 E-value=49 Score=26.52 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHHH---HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWYR---YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfayr---Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 97 (200)
++..+++..|+. ++++++..|++.+.. .+..+++.+. ... ..|+.++|+-++.
T Consensus 174 ~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~---~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 174 RLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTV---AGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH---HHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH---hcC--CCcCHHHHHHHHC
Confidence 444455566765 889999999988764 4444444433 222 4699999887764
No 94
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=42.35 E-value=1.4e+02 Score=24.54 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhCCCc
Q 028993 36 DAKIVKSLLKSMGVE 50 (200)
Q Consensus 36 Da~~I~~ILks~Gv~ 50 (200)
+..-+..++.++||.
T Consensus 45 e~~~f~~m~~slGvd 59 (218)
T 3cuq_B 45 ETIRFKSYLLSMGIA 59 (218)
T ss_dssp CSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 345677788888886
No 95
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=41.69 E-value=33 Score=27.63 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVK 93 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVr 93 (200)
++..+++..|+. ++++++..|.+.+......++......+..+ ..|+.++|.
T Consensus 177 ~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~ 228 (327)
T 1iqp_A 177 RLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVF 228 (327)
T ss_dssp HHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHH
Confidence 355555667875 8999998888877544443333332222222 245555554
No 96
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=41.13 E-value=11 Score=30.98 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHH
Q 028993 34 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDV 92 (200)
Q Consensus 34 PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDV 92 (200)
+-..--+.++++..+--++.-.=...++||..+-..++|.-|..-|+..||..|..-|+
T Consensus 26 vmg~~kferlFR~aagLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 55566788899888545688888999999999999999999999999999998877664
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=39.94 E-value=24 Score=33.32 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 51 DYEPRVIHQFLELWY---------------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 51 ~yep~Vv~qLLEfay---------------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.+++.+...+.++.. |....++.=|..+|...||..|+.+||+.||..
T Consensus 414 ~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 414 ELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAEL 482 (506)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 577777776666532 223346777888999999999999999999976
No 98
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=39.79 E-value=83 Score=25.30 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh----CCCCCCHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELW-----------YRYVVDVLTDAQVYSEHA----GKNTIDCDDVK 93 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfa-----------yrYt~~VL~DA~~yA~HA----gR~tI~~eDVr 93 (200)
.++..+++..|+ .+++++...|.+++ -|.+..+++.|...+... +...|+.+|+.
T Consensus 211 ~il~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 211 EIAGHMLDDQNY-QMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 455666777785 59999999999984 477788888887543221 34566666655
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=39.39 E-value=19 Score=29.88 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHHHHHH---HHHHHHHHHh----hhCCCCC-CHHHHHHHHHHhhcccc-----
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVD---VLTDAQVYSE----HAGKNTI-DCDDVKLAVQSKVNSSF----- 104 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~---VL~DA~~yA~----HAgR~tI-~~eDVrLAI~~r~~~~F----- 104 (200)
.++...++..|+ .++++++..|.+.+ ..+.+ ++..+..+.. ..+...| +.++|+-+++...+...
T Consensus 173 ~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~~~~~~i~s 250 (324)
T 1l8q_A 173 KIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYAVKVEDILS 250 (324)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHSS
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhCCCHHHHhc
Confidence 344455556676 58899988888776 44443 3444443300 1334568 88999988875333110
Q ss_pred ---CCC--CcHHHHHHHHHhhcCCCCCCCCCCCC
Q 028993 105 ---SQP--PAREVLLELAKNRNKIPLPKSIAGRG 133 (200)
Q Consensus 105 ---~~p--Ppre~LlelA~e~N~~PLP~i~~~~G 133 (200)
..+ -+|...+-+|++.-...++.|-..+|
T Consensus 251 ~~~~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g 284 (324)
T 1l8q_A 251 DKRNKRTSEARKIAMYLCRKVCSASLIEIARAFK 284 (324)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHCCCHHHHHHHSS
T ss_pred CCCCCccchHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 001 35666777777766677777754443
No 100
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=38.38 E-value=55 Score=28.04 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------CCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA----------------GKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HA----------------gR~tI~~eDVrLAI~~ 98 (200)
++..+++..|.. +++.++..|.+.+..|+..-+.....+|-.. +...|+.+|+..|++.
T Consensus 290 il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 290 LLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 344455555643 7888888888887776664444444333211 3457999999999875
No 101
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.39 E-value=53 Score=30.50 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCc-ccchHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 39 IVKSLLKSMGVE-DYEPRVIHQFLE-LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 39 ~I~~ILks~Gv~-~yep~Vv~qLLE-fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
++...++.+.+. +++-+.+..+.+ |.-.-...|..+|..+|-..++..|+.+|+.-|++..
T Consensus 388 Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 388 IFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 444555566543 233222222221 3445667888999999988899999999999999753
No 102
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=34.14 E-value=42 Score=22.68 Aligned_cols=33 Identities=6% Similarity=0.135 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 66 RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 66 rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
.=...+..+|...|-..++..|+.+|+.-|++.
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYKT 70 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 344567778888887778889999999999965
No 103
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.81 E-value=1.2e+02 Score=28.41 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHHhCCCcccchHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 40 VKSLLKSMGVEDYEPRVIHQFLELWYR------------------YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 40 I~~ILks~Gv~~yep~Vv~qLLEfayr------------------Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+..||+.+|+. -+.+...|.+++.+ -+..||+.|..+|...|...|+.+.|-+|+-.
T Consensus 40 ~~~iL~~~gvd--~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 40 AREALEACSVD--LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhc
Confidence 66899999986 22344444444433 36679999999999999999999999999843
No 104
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=33.43 E-value=87 Score=23.41 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=43.8
Q ss_pred CCCCCCChhHHHHHHhhhhcCCCCCCChhHH----HHHHHHHhCCCcccchHHHHHHHHH----------HHHHHHHHHH
Q 028993 8 GNPASFPSTVNLLQKAEEMAEGDEDLPRDAK----IVKSLLKSMGVEDYEPRVIHQFLEL----------WYRYVVDVLT 73 (200)
Q Consensus 8 ~~~~~~p~~~~~~~~~~~m~~~~~~~PrDa~----~I~~ILks~Gv~~yep~Vv~qLLEf----------ayrYt~~VL~ 73 (200)
|.-+..+|+..++|. +|++.. .+...+-++-+++ |+|..-|--| +||-+..+|.
T Consensus 18 ~~m~~mqs~yeLIq~----------lP~~l~qv~q~~v~ai~sl~~qD--pnV~kDLdn~~acL~k~~~t~~rat~SLL~ 85 (97)
T 3g80_A 18 GHMTNMSCAYELIKS----------LPAKLEQLAQETQATIQTLMIAD--PNVNKDLRAFCEFLTVQHQRAYRATNSLLI 85 (97)
T ss_dssp ------CCHHHHHHT----------HHHHHHHHHHHHHHHHHTCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccchhHHHHHHH----------HHHHHHHHHHHHHHHHHhccccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555567888888887 788887 6666666666655 8888776655 5788888998
Q ss_pred HHHHHHhhhC
Q 028993 74 DAQVYSEHAG 83 (200)
Q Consensus 74 DA~~yA~HAg 83 (200)
.-++.|-.-|
T Consensus 86 KprVaA~L~G 95 (97)
T 3g80_A 86 KPRVAAALRG 95 (97)
T ss_dssp SHHHHHHHTT
T ss_pred hHHHHHHHhc
Confidence 8888776655
No 105
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=32.97 E-value=14 Score=30.40 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCcccch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEP-RVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep-~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 97 (200)
.+..+++..|+. +++ +++..|++.+...+.+++.....++ +...|+.++|+.++.
T Consensus 180 ~l~~~~~~~~~~-~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 180 RLTEICKHEGIA-IADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHTCC-BSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC--------
T ss_pred HHHHHHHHcCCC-CCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHHHHHhC
Confidence 345556677764 777 9999998888766666666555555 334588888876554
No 106
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=32.88 E-value=57 Score=23.31 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=44.8
Q ss_pred ChhHHHHHHhhhhcCCCCCCChhHHHHHHHHHhCCCcccchHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhC
Q 028993 14 PSTVNLLQKAEEMAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLEL----------WYRYVVDVLTDAQVYSEHAG 83 (200)
Q Consensus 14 p~~~~~~~~~~~m~~~~~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEf----------ayrYt~~VL~DA~~yA~HAg 83 (200)
+|+..++|. +|++..-+.....+|.-++..|+|..-|--| +||-+..+|..-.+.|-.-|
T Consensus 2 qs~yeLiq~----------lP~~l~q~~q~v~~~t~qda~pnV~kDLdn~~acL~k~~~t~~rat~sLL~KprvaA~L~G 71 (73)
T 2az0_A 2 PSKLALIQE----------LPDRIQTAVEAAMGMSYQDAPNNVRRDLDNLHACLNKAKLTVSRMVTSLLEKPSVVAYLEG 71 (73)
T ss_dssp CCHHHHHHT----------HHHHHHHHHHTGGGSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred ccHHHHHHH----------HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcC
Confidence 456666665 7888887777777887777888888776555 57888888888888776666
Q ss_pred C
Q 028993 84 K 84 (200)
Q Consensus 84 R 84 (200)
+
T Consensus 72 e 72 (73)
T 2az0_A 72 K 72 (73)
T ss_dssp -
T ss_pred C
Confidence 4
No 107
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.56 E-value=61 Score=29.89 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCc-ccchHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 38 KIVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 38 ~~I~~ILks~Gv~-~yep~Vv~qLLE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+++...++.+.+. +++ ...|.+ |.-.-...|..+|..+|-..++..|+.+|+..|++.
T Consensus 360 ~Il~~~l~~~~l~~dvd---l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 360 KILGIHTSKMNLSEDVN---LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHTTSCBCSCCC---HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3444555566543 233 333333 334566788889999998889999999999999864
No 108
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=32.37 E-value=46 Score=22.65 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 66 RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 66 rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
.=...+..+|...|-..++..|+.+|+.-|+...
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3445677788888888888999999999999753
No 109
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.67 E-value=69 Score=29.05 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCc-ccchHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 39 IVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 39 ~I~~ILks~Gv~-~yep~Vv~qLLE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
++...++.+++. +++ ...|.+ |.-.-...|..+|..+|-..++..|+.+|+..|+...
T Consensus 327 Il~~~~~~~~l~~dvd---l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 327 ILRIHSRKMNLTRGIN---LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHTTSBCCSSCC---HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCccCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 445555666543 333 233333 3334567888899888888899999999999999753
No 110
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=30.57 E-value=59 Score=23.74 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 028993 67 YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQ 97 (200)
Q Consensus 67 Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~ 97 (200)
-+..+|..|..+|...|...|+.+.+-+|+-
T Consensus 86 ~~~~vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 86 DLVRVLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 4567899999999999999999999999996
No 111
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=30.41 E-value=1.4e+02 Score=24.24 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCCCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccccCCCCc
Q 028993 30 DEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPA 109 (200)
Q Consensus 30 ~~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~F~~pPp 109 (200)
...+|++-.+...+.+.++ .--+....|.++...|- ..++..+++--..-.=.+|+|+-.|...+...|..|-.
T Consensus 19 ~~l~pke~~ff~ll~~~a~---~v~~~a~~L~~~l~~~~---~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~d 92 (227)
T 3l39_A 19 SKFTPKEPKFFPLLKQLSD---VLSASSVLLVESMEHDL---PTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFD 92 (227)
T ss_dssp CCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHTTCCS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSC
T ss_pred HhhcCCCchHHHHHHHHHH---HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 3467888777776666554 23344444444443110 01111111111000113588999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028993 110 REVLLELAKNR 120 (200)
Q Consensus 110 re~LlelA~e~ 120 (200)
|+.++.|+...
T Consensus 93 ReDI~~L~~~l 103 (227)
T 3l39_A 93 REDIHDLASCM 103 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 112
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=29.22 E-value=1.4e+02 Score=20.55 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHhhhhcCCCCCCChhHHHHHHHHHhC---CCc-ccchHHHHHHHHHH-------HHHHHHHHHHH
Q 028993 19 LLQKAEEMAEGDEDLPRDAKIVKSLLKSM---GVE-DYEPRVIHQFLELW-------YRYVVDVLTDA 75 (200)
Q Consensus 19 ~~~~~~~m~~~~~~~PrDa~~I~~ILks~---Gv~-~yep~Vv~qLLEfa-------yrYt~~VL~DA 75 (200)
+...++..+=| ..-|.+...|...+... |+. .|++++|...++.| .+|+..||..=
T Consensus 4 ~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~~~Yi~~IL~~W 70 (83)
T 2i5u_A 4 IRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARNYNYINAILKDW 70 (83)
T ss_dssp HHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34444544334 45688888888888776 332 67899998888888 47888888764
No 113
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=29.18 E-value=31 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=11.1
Q ss_pred CCCcccchHHHHHHHHHHH
Q 028993 47 MGVEDYEPRVIHQFLELWY 65 (200)
Q Consensus 47 ~Gv~~yep~Vv~qLLEfay 65 (200)
.|+++|+++-+..||+-+-
T Consensus 4 sgvtrfdekqieelldnci 22 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCI 22 (31)
T ss_dssp ------CHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHH
Confidence 5899999999999998664
No 114
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.05 E-value=1.2e+02 Score=27.56 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCc-ccchHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhh
Q 028993 39 IVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKV 100 (200)
Q Consensus 39 ~I~~ILks~Gv~-~yep~Vv~qLLE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~ 100 (200)
++..+++.+++. +++ ...|.+ |.-.-...+..+|..+|-..++..|+.+|+.-|+...+
T Consensus 352 Il~~~~~~~~l~~~~d---l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 352 IFGTIASKMSLAPEAD---LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHHHHSSCBCTTCC---HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCcccC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 455566666643 232 333443 33345677888888888888999999999999997644
No 115
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.58 E-value=41 Score=30.35 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY---RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay---rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
++..++...|+. ++++++..|.+.+. |.+..+|+.+ + .+++.|+.+||+-++..
T Consensus 217 ~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~---~--~~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 217 RLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTI---S--TTTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHH---H--HHSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHH---H--hcCCCCchHHHHHHHHh
Confidence 344555556765 89999998888874 4444444333 2 25678999999888763
No 116
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=27.18 E-value=58 Score=26.23 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHHHHHH----HHHHHHHHHHhhh------------CCCCCCHHHHHHHHHH
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWYRYVV----DVLTDAQVYSEHA------------GKNTIDCDDVKLAVQS 98 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~----~VL~DA~~yA~HA------------gR~tI~~eDVrLAI~~ 98 (200)
++..+++..|. .+++.++..|.+.+..|+. .++.+|...|-.. ....|+.+|+..|++.
T Consensus 197 il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 197 LLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 34455555554 3677888888877776655 3344443333221 1357999999988854
No 117
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=27.07 E-value=1.4e+02 Score=25.29 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHHHHHH----HHHHHHHHHhh------------hCCCCCCHHHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVD----VLTDAQVYSEH------------AGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~----VL~DA~~yA~H------------AgR~tI~~eDVrLAI~~ 98 (200)
.++..+++..|+. +++..+..|.+.+..|... ++..|...+-. .....|+.+|+..|++.
T Consensus 258 ~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 258 QIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp HHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence 3445555556643 6677777777765544433 33333222211 23457999999999975
No 118
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.49 E-value=63 Score=26.93 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHH
Q 028993 38 KIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG---KNTIDCDDVKLAV 96 (200)
Q Consensus 38 ~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAg---R~tI~~eDVrLAI 96 (200)
+++..+++..|+. +++++...+.+++..-...++......+..++ +..|+.++|+.++
T Consensus 176 ~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 176 RRIANVLVHEKLK-LSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp HHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 4455566666764 88888888888776444444333333333333 3468888886543
No 119
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.62 E-value=85 Score=28.57 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCc-ccchHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 39 IVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 39 ~I~~ILks~Gv~-~yep~Vv~qLLE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
++...++.+... +++ ...|.+ |.-.-...|..+|..+|-..++..|+.+|+.-|++..
T Consensus 360 Il~~~~~~~~~~~d~d---l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 360 IFKIHTAKVKKTGEFD---FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHTSCBCSCCC---HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcccC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 455555666543 333 233333 3335667788899999988899999999999999753
No 120
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=25.38 E-value=2.3e+02 Score=23.99 Aligned_cols=66 Identities=14% Similarity=0.338 Sum_probs=39.0
Q ss_pred CChhHH---HHHHHHHhCCCcccchH--HHHH---HHHHHHHHHHHHHHHHHHHHhhhC-----------------C--C
Q 028993 33 LPRDAK---IVKSLLKSMGVEDYEPR--VIHQ---FLELWYRYVVDVLTDAQVYSEHAG-----------------K--N 85 (200)
Q Consensus 33 ~PrDa~---~I~~ILks~Gv~~yep~--Vv~q---LLEfayrYt~~VL~DA~~yA~HAg-----------------R--~ 85 (200)
+-+|.. -..+++.++||.-..-. +-.+ +-+|=|..+..|++=-...-.+.| . .
T Consensus 34 I~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~ 113 (234)
T 3cuq_A 34 IRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQ 113 (234)
T ss_dssp HHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccC
Confidence 444544 35677888888743322 1111 247777777766654443333332 2 5
Q ss_pred CCCHHHHHHHHHH
Q 028993 86 TIDCDDVKLAVQS 98 (200)
Q Consensus 86 tI~~eDVrLAI~~ 98 (200)
.|+.|||.-||+.
T Consensus 114 ~IS~dDi~rAik~ 126 (234)
T 3cuq_A 114 DVSQDDLIRAIKK 126 (234)
T ss_dssp SCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 7999999999976
No 121
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=24.67 E-value=74 Score=22.15 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q 028993 67 YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSK 99 (200)
Q Consensus 67 Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r 99 (200)
=...|..+|...|-..++..|+.+|+..|++..
T Consensus 49 DL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 49 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345678888888877788899999999999753
No 122
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.18 E-value=1.2e+02 Score=27.56 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCc-ccchHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 38 KIVKSLLKSMGVE-DYEPRVIHQFLE----LWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 38 ~~I~~ILks~Gv~-~yep~Vv~qLLE----fayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
+++...++.+... +++ ...|.+ |.-.-...|..+|..+|-..|+..|+.+|+.-|++.
T Consensus 359 ~Il~~~~~~~~~~~dvd---l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 359 QILQIHSRKMTTDDDIN---WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHHHSCBCSCCC---HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHhcCCCCCCcCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3455556666542 333 233333 334566788889988988889999999999999965
No 123
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=22.61 E-value=2.1e+02 Score=24.10 Aligned_cols=70 Identities=11% Similarity=0.317 Sum_probs=48.6
Q ss_pred CCCCCCChhHHH---HHHHHHhCCCcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--------------C
Q 028993 28 EGDEDLPRDAKI---VKSLLKSMGVEDYE-----PRVIHQFLELWYRYVVDVLTDAQVYSEHAGK--------------N 85 (200)
Q Consensus 28 ~~~~~~PrDa~~---I~~ILks~Gv~~ye-----p~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR--------------~ 85 (200)
...+.+-+|..+ ..+++.++||.-.. -++.. +-||=|..+..|++=-...-.+.|. .
T Consensus 49 kHk~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg-~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~ 127 (233)
T 1u5t_A 49 KHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFT-VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKL 127 (233)
T ss_dssp HCTTTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTT-HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTT
T ss_pred HhHhhcccCHHHHHHHHHHHHHcCCCCCccCCccccccC-cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhc
Confidence 444678888764 77889999988333 22222 4788888888888766665555542 3
Q ss_pred CCCHHHHHHHHHH
Q 028993 86 TIDCDDVKLAVQS 98 (200)
Q Consensus 86 tI~~eDVrLAI~~ 98 (200)
.|+.|||.-||+.
T Consensus 128 ~IS~dDi~rAik~ 140 (233)
T 1u5t_A 128 NVGLDDLEKSIDM 140 (233)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7888888888876
No 124
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=22.32 E-value=38 Score=24.71 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhccccCCCCcHHHHH
Q 028993 89 CDDVKLAVQSKVNSSFSQPPAREVLL 114 (200)
Q Consensus 89 ~eDVrLAI~~r~~~~F~~pPpre~Ll 114 (200)
+||+++|.+. ....|+.-||.+.|+
T Consensus 48 AdDLk~AY~~-a~~~Ys~LPpY~~Li 72 (85)
T 3rq9_A 48 ADDLKNAYEQ-ALGQYSGLPPYDRLI 72 (85)
T ss_dssp HHHHHHHHHH-HHHHCSSCCCHHHHT
T ss_pred hHHHHHHHHH-HHHhhcCCCCHHHHh
Confidence 6999999987 446788999999887
No 125
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=22.20 E-value=1.5e+02 Score=20.35 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 62 ELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 62 EfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
|+++-|+.=+|.|+ | ..|+++||+--+++
T Consensus 6 ela~~YAAllL~~~-------g-~~~ta~~I~~il~A 34 (69)
T 2lbf_A 6 ELACIYSALILHDD-------E-VTVTEDKINALIKA 34 (69)
T ss_dssp HHHHHHHHHHHHHH-------T-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------C-CCCCHHHHHHHHHH
Confidence 77888887777765 6 58999999988877
No 126
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.88 E-value=62 Score=25.80 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhhccccCCCCcHHHHHHHHHhh
Q 028993 88 DCDDVKLAVQSKVNSSFSQPPAREVLLELAKNR 120 (200)
Q Consensus 88 ~~eDVrLAI~~r~~~~F~~pPpre~LlelA~e~ 120 (200)
.+|.++-.|...+...|..|-+|+.++.++...
T Consensus 61 ~aD~l~~~I~~~L~~~~~~P~dredi~~L~~~l 93 (227)
T 2olt_A 61 QGDSLKREIRLTLPSGLFMPVERTDLLELLTQQ 93 (227)
T ss_dssp HHHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 358899999999999999999999999887653
No 127
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.64 E-value=1.4e+02 Score=20.61 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCCCCChhHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 28 EGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 28 ~~~~~~PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
++.+.+..+ -+..+|+.+|+. ... +.+....++..|...|+-++.-.++..
T Consensus 23 d~dG~Is~~--el~~~l~~~~l~---~~~---------------l~~i~~~~D~d~dG~i~~~EF~~~~~~ 73 (99)
T 1qjt_A 23 GNTGRVLAL--DAAAFLKKSGLP---DLI---------------LGKIWDLADTDGKGVLSKQEFFVALRL 73 (99)
T ss_dssp TTSSCCCSH--HHHHHHHTSSSC---HHH---------------HHHHHHHHCCSSSSSCCSHHHHHHHHH
T ss_pred CCCCcCCHH--HHHHHHHHcCCC---HHH---------------HHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence 344445443 356677777753 222 223333456667778999887777654
No 128
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=21.54 E-value=2.5e+02 Score=20.68 Aligned_cols=58 Identities=5% Similarity=0.051 Sum_probs=38.4
Q ss_pred HHHHHHHHhC---CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-------CCCCCHHHHHHH
Q 028993 38 KIVKSLLKSM---GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG-------KNTIDCDDVKLA 95 (200)
Q Consensus 38 ~~I~~ILks~---Gv~~yep~Vv~qLLEfayrYt~~VL~DA~~yA~HAg-------R~tI~~eDVrLA 95 (200)
.+|.+||... --++.+.+++..+-+++.-|+.+.+-.|..-.+-.+ ...++.+|+.--
T Consensus 5 ~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEki 72 (88)
T 3v9r_B 5 EALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERI 72 (88)
T ss_dssp HHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHH
Confidence 3577888733 125899999999999988888888877754333222 247888887643
No 129
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.32 E-value=1.5e+02 Score=27.92 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 67 YVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 67 Yt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
-+..||..|...|...|...|+.+.|-||+-.
T Consensus 83 ~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~ 114 (758)
T 3pxi_A 83 RAKKVIELSMDEARKLGHSYVGTEHILLGLIR 114 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHh
Confidence 46789999999999999999999999999854
No 130
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=21.23 E-value=47 Score=24.85 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhccccCCCCcHHHHHH
Q 028993 89 CDDVKLAVQSKVNSSFSQPPAREVLLE 115 (200)
Q Consensus 89 ~eDVrLAI~~r~~~~F~~pPpre~Lle 115 (200)
+||+++|.+. ....|+.-||.+.|++
T Consensus 73 AdDLk~AY~~-a~~~Ys~LPpY~~Li~ 98 (102)
T 3stq_A 73 ADDLKNAYEQ-ALGQYSGLPPYDRLIE 98 (102)
T ss_dssp HHHHHHHHHH-HHHHCBSCCCHHHHHC
T ss_pred hHHHHHHHHH-HHHhhcCCCCHHHHhh
Confidence 6899999987 4467889999999873
No 131
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=20.79 E-value=35 Score=27.14 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 028993 65 YRYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQS 98 (200)
Q Consensus 65 yrYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~ 98 (200)
-+-...++..|..+|...|+..|+.+|++.|++.
T Consensus 219 g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 219 GADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 3567788889999988888899999999988754
No 132
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.71 E-value=2.8e+02 Score=26.59 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCcccchHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHhhccc
Q 028993 39 IVKSLLKSMGVEDYEPRVIHQFLELWY---------------RYVVDVLTDAQVYSEHAGKNTIDCDDVKLAVQSKVNSS 103 (200)
Q Consensus 39 ~I~~ILks~Gv~~yep~Vv~qLLEfay---------------rYt~~VL~DA~~yA~HAgR~tI~~eDVrLAI~~r~~~~ 103 (200)
++..||+.+|+. -+.+...|..++. .-+..+|+.|..+|...|...|+.+.|-+|+-..-+.
T Consensus 45 ~~~~iL~~~gvd--~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~- 121 (854)
T 1qvr_A 45 LAWRLLEKAGAD--PKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG- 121 (854)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-
Confidence 567788888875 1223333333322 2366789999999999999999999999999653322
Q ss_pred cCCCCcHHHHHH
Q 028993 104 FSQPPAREVLLE 115 (200)
Q Consensus 104 F~~pPpre~Lle 115 (200)
. .+++.+..
T Consensus 122 ~---~~~~~~~~ 130 (854)
T 1qvr_A 122 L---PGLEALKG 130 (854)
T ss_dssp S---CCHHHHHH
T ss_pred c---CCHHHHHH
Confidence 1 44555543
No 133
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=20.05 E-value=1.1e+02 Score=20.39 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHhCCCcccchHHHHHHHHHH
Q 028993 34 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELW 64 (200)
Q Consensus 34 PrDa~~I~~ILks~Gv~~yep~Vv~qLLEfa 64 (200)
...+.=|..||++.|++ +++.-+..|+..+
T Consensus 16 ~~t~~~I~~il~aaGve-ve~~~~~~~~~~L 45 (58)
T 3a1y_A 16 EINEENLKAVLQAAGVE-PEEARIKALVAAL 45 (58)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Confidence 44577789999999995 8887777766544
Done!